>AArabidopsis thaliana gi|2266990 vacuolar type ATPase subunit A
MPAFYGGKLTTFEDDEKESEYGYVRKVSGPVVVADGMAGAAMYELVRVGHDNLIGEIIRLEGDSATIQVY
EETAGLTVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIARISGDVYIPRGVSVPALDKDCLWEFQP
NKFVEGDTITGGDLYATVFENTLMNHLVALPPDAMGKITYIAPAGQYSLKDTVIELEFQGIKKSYTMLQS
WPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDAVVYVGCG
ERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMM
ADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERNGSVTIVGAVSPPGGDF
SDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEKFDPDFINIRTKAREVLQRED
DLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVER
AAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEDTLVEKFKKLYDDLNAGFRALEDETR

>AMus musculus coded_by="U13837:19..1872" ACCESSION   1184659 
 mdfsklpkir dedkestfgy vhgvsgpvvt acdmagaamy elvrvghsel vgeiirlegd
 matiqvyeet sgvsvgdpvl rtgkprsvel gpgimgaifd giqrplsdis sqtqsiyipr
 gvnvsalsrd ikwefipskn lrvgshitgg diygivnens likhkimlpp rnrgsvtyia
 ppgnydasnv vlelefegvk ekfsmvqvwp vrqvrpvtek lpanhplltg qrvldalfpc
 vqggttaipg afgcgktvis qslskysnsd viiyvgcger gnemsevlrd fpeltmevdg
 kaesimkrta lvantsnmpv aareasiytg itlseyfrdm gyhvsmmads tsrwaealre
 isgrlaempa dsgypaylga rlasfyerag rvkclgnper egsvsivgav sppggdfsdp
 vtsatlgivq vfwgldkkla qrkhfpsvnw lisyskymra ldeyydkhft efvplrtkak
 eilqeegdla eivqlvgkas laetdkitle vaklikddfl qqngytpydr fcpfyktvgm
 lsnmisfydm arravettaq sdnkitwsii rehmgeilyk lssmkfkdpv kdgeakikad
 yaqlledmqn afrsled*


>ANeurospora crassa gi|168926|gp|J03955|NEUVMA1A_1  [Neurospora crassa]
MAPQQNGAEVDGIHTGKIYSVSGPVVVAEDMIGVAMYELVKVGH
DQLVGEVIRINGDQATIQVYEETAGVMVGDPVLRTGKPLSVELGPGLLNNIYDGIQRP
LEKIAEASNSIYIPRGIATPALDRKKKWEFTPTMKVGDHIAGGDVWGTVYENSFISVH
KILLPPRARGTITRIAEKGEYTVEEKILEVEFDGKKTEYPMMQTWPVRVPRPAAEKHS
ANQPFLVGQRVLDALFPSVQGGTVAIPGAFGCGKTVISQSVSKFSNSDVIVYVGCGER
GNEMAEVLKDFPELSIEVDGRKEPIMKRTTLIANTSNMPVAAREASIYTGITVAEYFR
DQGMNVAMMADSSSRWAEALREISGRLGEMPADQGFPAYLGAKLASFYERAGKVQALG
SPPREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINTSVSY
SKYLTILDKWYEREYPDFPRLRDRIRQLLSDSEELDQVVQLVGKSALSDPDKITLDMA
TLIKEDFLQQNGYSDYDQFCPIWKTEWMMKLMMGFHDEAQKAIAQGQNWNKVREATQD
LQAQLKSLKFEVPSEGQEKICKKYEAIQQQMLDKFASVIDE*



>APlasmodium falciparum gi|160736|gp|L08200|PFAVAPA_1 
MTKVAVEKEEPGVVYKVAGSLVIAENMSGTRMYELAKVGWNKLV
GEIIRLEGNYAYIQVYEDTSGLSVGDPVIKTGNALSVELGPGILDNIYDGIQRPLERI
ANVCGDVYIYKGIDMTSLDHDKQWQFYADKKLKLNDIVTGGDIFGFVDENKLFKEHKI
MAPPNAKGRLTYIAPDGSYTLKDKIFELEYQGKKYTYGLSHLWPVRDPRPVLEKVTGD
TLLLTGQRVLDSLFPTVQGGTCAIPGAFGCGKTCVSQALSKYSNSEVIIYVGCGERGN
EMAEILSDFPELTTKVDNEDVGIMQRTCLVANTSNMPVAAREASIYTGITLCEYFRDM
GYNATMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGKVKCIGSP
SRIGSITIVGAVSPPGGDFSDPVTTATMSIVQAFWGLDKKLAQRKHFPSVNWSTSFSK
YVRQLEQYFDNFDQDFLSLRQKISDILQQESDLNDIVQLVGKDSLSEDQKVVMEVAKI
IREDFLQQNAFSDYDYMCPLQKTVGMMRIICHFYAQCLRTLQEYDSRERKIGWGSIYN
TLRPTINKITHMKFENPKNSDEYFKKYFKALEEEITVGLRNLMEK*


>ATrypanosoma congolense gi|397636|gp|Z25814|TCVACATPA_1
MTSDKNPYKTEQRMGAVKAVSGPVVIAENMGGSAMYELVQVGSF
RLVGEIIRLEGDTATIQVYEETGGLTVGDPVYCTGKPLSLELGPGIMSEIFDGIQRPL
DTIYRMVENVFIPRGVQVKSLNDQKQWDFKPCLKVGDLVSGGDIIGSVVENSLMYNHS
IMIPPNVRGRVTSIVPSGNYTLQDDIIELEYNGTVKSLKLMHRWPVRTPRPVASKESG
NHPLLTGQRVLDALFPSVQGGTCAIPGAFGCGKTVISQALSKFSNSDAVIYVGCGERG
NEMAEVLMDFPTLTTVIDGREESIMKRTCLVANTSNMPVAAREASIYTGITLAEYYRD
MGKHIAMMADSTSRWAEALREISGRLAEMPADGGYPAYLSARLASFYERAGRVTCIGG
PKREGSVTIVGAVSPPGGDFSDPVTSATLGIVQVFWGLEKRLAQRKHFPSVNWLISYS
KYLNALEPFFNTLDPDYMRLRSVAAEILQREEELQEIVQLVGKDSLSESDKIILETAK
VIREEFLQQNAFTPYDKYCPPYKTCWMLRNIVAFYEESQRVVAESAGELKITWNYIRE
MIPHIYTGLTEMKFRDPQEGEEANVEFYRKQNEEIVSAFASLLQ*


>Asulfolobus acidocaldarius gi|152927|gp|J03218|SSOATPMA_1 
MVSEGRVVRVNGPLVIADGMREAQMFEVVYVSDLKLVGEITRIE
GDRAFIQVYESTDGVKPGDKVYRSGAPLSVELGPGLIGKIYDGLQRPLDSIAKVSNSP
FVARGVSIPALDRQTKWHFVPKVKSGDKVGPGDIIGVVQETDLIEHRILIPPNVHGTL
KELAREGDYTVEDVVAVVDMNGDEIPVKMYQKWPVRIPRPYKEKLEPVEPLLTGIRVL
DTVFPIAKGGTAAIPGPFGSGKTVTLQSLAKWSAAKVVIYVGCGERGNEMTDELRSFP
KLKDPWTGKPLLLRTILVANTSNMPVAARESSIYVGVTMAEYFRDQGYDVLLVADSTS
RWAEALRDLGGRMEEMPAEEGFPSYLPSRLAEYYERAGRVIALGNPERYGSVTIASAV
SPPGGDFTEPVTSNTLRFVRVFWPLDVSLAQARHYPAINWIQGFSAYVDLVAQWWHKN
VDPNWKEMRDTMMKVLIREDELRQIVRLVGPEELAEKDKLVLEAAKLIKDAFLKENAY
DDIDAFSSPQKQVRIMRLIYIFYNQSQDLISKGVPLKKILDKVGPIEPEIIRIKYTIK
NDELNKIDEIENKLKATFDSLLKEVS*


>AMethanosarcina barkeri gi|149820|gp|J04836|MESATPAB_1 
MEVKGEIYRVSGPVVTAIGLQAKMYDLVKVGNEGLMGEVIQILG
PKTIIQVYEETAGIKPGEPCVSTGSSLSVELGPGLLSSIYDGVQRPLHVLLEKMGSFI
QRGVSADGLDHKKLWDFKPIVKKGDSVKGGDVIGVVQETVNIEHKIMVPPDISGTISD
IKSGNFTVVDTICTLTDGTELQMMQRWPVRRPRPVKAKLTPTRPLVTGMRILDGLFPV
AKGGTAAIPGPFGSGKTVTQQSLAKWSDTEIVVYIGCGERGNEMADVLSEFPELEDPQ
TGRPLMERTVLIANTSNMPVAAREASVYTGITIAEYYRDMGLDVSLMADSTSRWAEAM
REISSRLEEMPGEEGYPAYLSARLAEFYERAGVAESLCGETGSITVIGAVSPPGGDFS
EPVTQNTLRIVKVFWALDAKLSQRRHFPAINWLNSYSLYKDSLNDWFADNVAPDYVPL
RERAMEMLQTESELQEIVQLVGSDALPDDQQLLLEITRMLREIFLQQNAFHPVDAYSP
FDQQYKILKAIMKWGDAAMDALKSGVPVTEIIKLESKNVLAKVKYEEKFDESMNAVLA
QMDKEFASLRGR*

>betE.coli beta sp|P00824
MATGKIVQVIGAVVDVEFPQDAVPRVYDALEVQNGNERLVLEVQQQLGGGIVRTIAMGSSDGLRRGLDVKDLEHPIEVPVGKATLGRIMNVLGEPVDMKGEIGEEERWAIHRAAPSYEELSNSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMTDSNVIDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDTARGVQSILQRYQELKDIIAILGMDELSEEDKLVVARARKIQRFLSQPFFVAEVFTGSPGKYVSLKDTIRGFKGIMEGEYDHLPEQAFYMVGSIEEAVEKAKKL*

>betAquifex  
     MAEVIKGRIV QVIGPVVDVE FEGVKELPRI KDGLKTIRRA IDDRGNWFEE VLFMEVAQHI  
     GEHRVRANAM GPTDGLVRGQ EVEYLGGPIK IPVGKEVLGR IFNVAGQPID EQGPVEAKEY  
     WPMFRNPPEL VEQSTKVEIL ETGIKVIDLL QPIIKGGKVG LFGGAGVGKT VLMQELIHNI  
     ARFHEGYSVV VGVGERTREG NDLWLEMKES GVLPYTVMVY GQMNEPPGVR FRVAHTGLTM  
     AEYFRDVEGQ DVLIFIDNIF RFVQAGSEVS TLLGRLPSAV GYQPTLNTDV GEVQERITST  
     KKGSITAIQA VYVPADDITD PAPWSIFAHL DATTVLTRRL AELGIYPAID PLESTSKYLA  
     PEYVGEEHYE VAMEVKRILQ RYKELQEIIA ILGMEELSEE DKAIVNRARR IQKFLSQPFH  
     VAEQFTGMPG KYVKLEDTIR SFKEVLTGKY DHLPENAFYM VGTIEDAIEK AKQMGAKV*

>BArabidopsis
MSLSVNMGTNDLDIEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGSTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTVDLLEDHGEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVMQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRDSTS*

>BMus musculus gi|12643430|sp|P50517|VAB2_MOUSE Vacuolar ATP synthase subunit B, brain isoform (V-ATPase B2 subunit) (Vacuolar proton pump B isoform 2) (Endomembrane proton pump 58 kDa subunit)
MALRAMRGIVNGAAPELPVPTGGPMAGAREQALAVSRNYLSQPRLTYKTVSGVNGPLVILDHVKFPRYAE
IVHLTLPDGTKRSGQVLEVSGSKAVVQVFEGTSGIDAKKTSCEFTGDILRTPVSEDMLGRVFNGSGKPID
RGPVVLAEDFLDIMGQPINPQCRIYPEEMIQTGISAIDGMNSIARGQKIPIFSAAGLPHNEIAAQICRQA
GLVKKSKDVVDYSEENFAIVFAAMGVNMETARFFKSDFEENGSMDNVCLFLNLANDPTIERIITPRLALT
TAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRNGSITQ
IPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHADVSN
QLYACYAIGKDVQAMKAVVGEEALTSDDLLYLEFLQKFEKNFITQGPYENRTVYETLDIGWQLLRIFPKE
MLKRIPQSTLSEFYPRDSAKH

>BNeurospora
MADPRVPSSYNVTPRIRYNTVGGVNGPLVILDNVKFPRYNEIVTLTLPDGTQRSGQVLEARGNRAVVQVFEGTSGIDVKKTKVEFTGESLKLGVSEDMLGRIFDGSGRAIDKGPKVLAEEYLDINGSPINPYAREYPQEMISTGISAIDTMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVQRQGITNKGVHDGHEENFSIVFGAMGVNLETARFFTRDFEENGSLGRTTLFLNLANDPTIERIITPRLALTTAEYYAYQLEKHVLVILTDLSSYCDALREVSAAREEVPGRRGFPGYMYTDLSTIYERAGRVAGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIFVDRGLHNRGIYPPINVLPSLSRLMKSAIGEGMTRKDHGDVSNQLYAKYAIGRDAAAMKAVVGEEALSNEDKLSLEFLDKFERSFIAQGPYESRTIFESLDLAWSLLRIYRKDMLNRIPKKIIDEFYSRSAADRKGKGKDKPTTKDTRDTAAPEEENLIDA*

>BbMethanosarcina
VNMVKEYKTITQIAGPLVFVEKTEPVGYKEIVTINLPDGTTRRGEVLDSSSDIVVIQIFEGTTGLDKECGVVFTGETLKLPASIDLLGRILSGSGEPLDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQAAVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEIPGRRGYPGYMYTDLATLYERAGIVKGAKGSVTQIPILSMPGDDITHPIPDLSGYITEGQIVVSRELHRKGIYPPINVLPSLSRLMNSGIGAGKTREDHKAVSDQMYAGYAEGRDLRGLVAIVGKEALSERDVKFLEFADLFEQQFVTQGRNENRTIADTLDIGWKILAHLPENQLGRIDNKYIQKYHPAHRKGQ*

>BSulfolobus
MSLLNVREYSNISMIKGPLIAVQGVSDAAYNELVEIEMPDGSKRRGLVVDSQMGVTFVQVFEGTTGISPTGSKVRFLGRGLEVKISEEMLGRIFNPLGEPLDNGPPVIGGEKRNINGDPINPATREYPEEFIQTGISAIDGLNSLLRGSKITDLSGSGLPANTLAAQIAKQATVRGEESNFAVVFAAIGVRYDEALFFRKFFEETGAINRVAMFVTLANDPPSLKILTPKTALTLAEYLAFEKDMHVLAILIDMTNYCEALRELSASREEVPGRGGYPGYMYTDLATIYERAGKVIGKKGSITQMPILTMPNDDMTHPIPDLTGYITEGQIVLDRSLFNKGIYPPINVLMSLSRLMKDGIGEGKTRDDHKDLSNQLFAAYARAQDIRGLAAIIGEDSLSEVDRKYLLFAEAFERRFVAQGVNENRSIETTVDIGWEVLSILPESELSLIRSEYIKKYHPNYRGKK*

>alpE.coli ha
MQLNSTEISELIKQRIAQFNVVSEAHNEGTIVSVSDGVIRIHGLADCMQGEMISLPGNRYAIALNLERDSVGAVVMGPYADLAEGMKVKCTGRILEVPVGRGLLGRVVNTLGAPIDGKGPLDHDGFSAVEAIAPGVIERQSVDQPVQTGYKAVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQRDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLARMPVALMGEYFRDRGEDALIIYDDLSKQAVAYRQISLLLRRPPGREAFPGDVFYLHSRLLERAARVNAEYVEAFTKGEVKGKTGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLETNLFNAGIRPAVNPGISVSRVGGAAQTKIMKKLSGGIRTALAQYRELAAFSQFASDLDDATRKQLDHGQKVTELLKQKQYAPMSVAQQSLVLFAAERGYLADVELSKIGSFEAALLAYVDRDHAPLMQEINQTGGYNDEIEGKLKGILDSFKATQSW*

>alpAquifex gi|15606090|ref|NP_213467.1| ATP synthase F1 alpha subunit 
MATLTYEEALEILRQQIKDFEPEAKMEEVGVVYYVGDGVARAYGLENVMAMEIVEFQGGQQGIAFNLEED
NVGIIILGSETGIEEGHIVKRTGRILDAPVGEGLVGRVIDPLGNPLDGKGPIQFEYRSPVEKIAPGVVKR
KPVHEPLQTGIKAIDAMIPIGRGQRELIIGDRATGKTTVAIDTILAQKNSDVYCIYVAVGQKRAAIARLI
ELLEREGAMEYTTVVVASASDPASLQYLAPFVGCTIGEYFRDNGKHALIIYDDLSKHAEAYRQLSLLMRR
PPGREAYPGDVFYLHSRLLERAAKLNDDLGAGSLTALPIIETKAGDVAAYIPTNVISITDGQIYLEADLF
NKGIRPAINVGLSVSRVGGAAQIKAMKQVAGTLRLELAQFRELEAFVQFASELDKATQQQINRGLRLVEL
LKQEPYNPIPVEKQIVLIYAGTHGYLDDIPVESVRKFEKELYAYLDNERPDILKEISEKKKLDEELEKKI
KEALDAFKQKFVP

>flEcoli
MTTRLTRWLTTLDNFEAKMAQLPAVRRYGRLTRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVV
GFNGQRLFLMPLEEVEGVLPGARVYAKNISAEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETG
ALITPPFNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIG
ERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMA
QREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFYTVLTEGDDQQDPIADSARAILDGH
IVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYARVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDK
AIALWPQLEGYLQQGIFERADWEASLQGLERIFPTVS

>flAquifex gi|3913671|sp|O67531|FLII_AQUAE Flagellum-specific ATP synthase
MKGIRRNLQKSYLKRCSEMYLRGLKVSGEIVSAKGIYLEAILPFANIGNEVEIQSNSRRIRGEVIGFSGD
KVLVMPYEPVFGLRKGDKVLLKNELVSTKTGNGVVGKVVDPFGNPLDGGFIGFVEEKGLELPQINPLYRE
RIREVFDTGVRSVNALFTLGKGQKIGIFAGAGVGKSTLLGMITRHSKADVVVLALIGERGREVKEFLEEV
LGEEGLKKSVVVVSTADQSPILKVKGAISAVVHAHHFASQGKDVLLLMDSITRLALAQREIGLAAGEPPT
LKGFTPSVFQLLTRIAESCGAFKKGSITGIFTVLVEGDDISLDPIADSLMGVLDGHIILSRKRAVRGLFP
AVDPVRSLSRLMPKLVSEEHFMKANFFKEVLSKFEDVEELVRIGLYKGGSNPLVDKVINNLEKVESFFKQ
KPEEKVNFEESLKALDEIYSLLK