BLASTP 2.2.1 [Apr-13-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|145722|gb|AAA23671.1| D-alanine:D-alanine ligase A (364 letters) Database: /flower/db/nr 841,211 sequences; 265,026,636 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value ref|NP_286119.1| (NC_002655) Z0477 gene product [Escherichia col... 728 0.0 ref|NP_454975.1| (NC_003198) D-alanine:D-alanine ligase A [Salmo... 663 0.0 ref|NP_103309.1| (NC_002678) D-alanine-D-alanine ligase A [Mesor... 296 3e-79 ref|NP_372607.1| (NC_002758) D-alanine-D-alanine ligase [Staphyl... 293 2e-78 ref|NP_485023.1| (NC_003272) D-alanyl-D-alanine ligase [Nostoc s... 289 2e-77 ref|NP_388337.1| (NC_000964) D-alanyl-D-alanine ligase A [Bacill... 289 3e-77 ref|NP_539644.1| (NC_003317) D-ALANINE--D-ALANINE LIGASE A [Bruc... 286 2e-76 ref|NP_294085.1| (NC_001263) D-alanine--D-alanine ligase [Deinoc... 276 3e-73 ref|NP_464381.1| (NC_003210) D-alanine--D-alanine ligase [Lister... 275 6e-73 ref|NP_470190.1| (NC_003212) D-alanine--D-alanine ligase [Lister... 274 9e-73 sp|Q9ZGN0|DDL_MYCSM D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 273 2e-72 ref|NP_349497.1| (NC_003030) D-alanine-D-alanine ligase [Clostri... 268 5e-71 sp|Q47827|DDL_ENTHR D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 267 1e-70 ref|NP_302152.1| (NC_002677) D-alanine-D-alanine ligase A [Mycob... 266 2e-70 ref|NP_337574.1| (NC_002755) D-alanine--D-alanine ligase [Mycoba... 266 3e-70 gb|AAB17902.2| (U39790) D-alanine:D-alanine ligase [Enterococcus... 265 7e-70 ref|NP_217497.1| (NC_000962) ddlA [Mycobacterium tuberculosis H3... 265 7e-70 gb|AAF71281.1|AF253562_5 (AF253562) ligase [Enterococcus faecalis] 262 4e-69 gb|AAG49141.1|AF215736_1 (AF215736) D-alanine:D-alanine ligase [... 262 5e-69 ref|NP_440997.1| (NC_000911) D-alanine:D-alanine ligase-related ... 258 5e-68 emb|CAB64487.1| (AJ243059) D-ala,D-ala ligase [Streptococcus pne... 256 3e-67 gb|AAC43218.1| (U00457) D-alanine:D-alanine ligase-related prote... 254 1e-66 sp|Q47758|DDL_ENTFA D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 253 2e-66 sp|Q9ZBR9|DDL_STRCO D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 253 3e-66 ref|NP_359108.1| (NC_003098) D-alanine-D-alanine ligase [Strepto... 252 5e-66 emb|CAB64471.1| (AJ243055) D-ala,D-ala ligase [Streptococcus pne... 251 8e-66 emb|CAB64475.1| (AJ243056) D-ala,D-ala ligase [Streptococcus pne... 250 1e-65 ref|NP_346110.1| (NC_003028) D-alanine--D-alanine ligase [Strept... 250 2e-65 emb|CAB64483.1| (AJ243058) D-ala,D-ala ligase [Streptococcus pne... 249 3e-65 emb|CAB64463.1| (AJ243053) D-ala,D-ala ligase [Streptococcus pne... 249 3e-65 sp|O54631|DDL_STRPN D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 249 4e-65 emb|CAB63849.1| (AJ243051) D-ala,D-ala ligase [Streptococcus pne... 249 4e-65 emb|CAB64459.1| (AJ243052) D-ala,D-ala ligase [Streptococcus pne... 248 6e-65 gb|AAD41882.1|AF153050_3 (AF153050) D-alanine:D-lactate ligase [... 247 1e-64 gb|AAD42184.1|AF130997_5 (AF130997) D-alanine:D-lactate ligase [... 244 8e-64 gb|AAG37026.1|AF277571_3 (AF277571) D-alanine:D-lactate ligase [... 242 3e-63 pir||T35363 D-alanine--D-alanine ligase (EC 6.3.2.4) A SC66T3.06... 239 3e-62 gb|AAD51060.1|AF175293_5 (AF175293) D-alanine:D-lactate ligase [... 239 3e-62 ref|NP_269512.1| (NC_002737) putative D-ala,D-ala ligase [Strept... 239 3e-62 ref|NP_266497.1| (NC_002662) D-alanine-D-alanine ligase (EC 6.3.... 237 1e-61 pdb|1EHI|A Chain A, D-Alanine:d-Lactate Ligase (Lmddl2) Of Vanco... 236 2e-61 gb|AAB18338.1| (U75444) D-Ala-D-Ala ligase2 [Leuconostoc mesente... 236 2e-61 ref|NP_219107.1| (NC_000919) D-alanine--D-alanine ligase (ddlA) ... 236 2e-61 sp|Q48745|DDL_LEUME D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 235 6e-61 sp|Q06893|VANB_ENTFC VANCOMYCIN B-TYPE RESISTANCE PROTEIN VANB (... 234 1e-60 emb|CAB61227.1| (Y15704) vana protein [Bacillus circulans] 232 4e-60 gb|AAF36803.1|AF155139_2 (AF155139) putative D-alanyl-D-alanine ... 231 7e-60 emb|CAB05883.1| (Z83305) D-alanine:D-alanine ligase-related prot... 231 9e-60 pdb|1E4E|B Chain B, D-Alanyl-D-Lacate Ligase 231 9e-60 gb|AAD19835.1| (AF060799) D-alanyl-D-alanine ligase [Amycolatops... 231 1e-59 pdb|1E4E|A Chain A, D-Alanyl-D-Lacate Ligase 231 1e-59 sp|P25051|VANA_ENTFC VANCOMYCIN/TEICOPLANIN A-TYPE RESISTANCE PR... 231 1e-59 gb|AAF72363.1|AF192329_24 (AF192329) VanB [Enterococcus faecalis] 231 1e-59 gb|AAC23582.1| (U82965) D-alanine:D-alanine ligase-related prote... 229 3e-59 gb|AAG34684.1|AF310954_1 (AF310954) ligase VanB2 [Enterococcus f... 229 5e-59 gb|AAG34685.1|AF310955_1 (AF310955) ligase VanB2 [Enterococcus f... 228 5e-59 gb|AAG34683.1|AF310953_1 (AF310953) ligase VanB2 [Enterococcus f... 228 6e-59 sp|Q47823|DDL_ENTGA D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 215 6e-55 gb|AAA60990.1| (L29638) ligase [Enterococcus casseliflavus] 214 9e-55 gb|AAL27442.1|AF430807_7 (AF430807) VanE [Enterococcus faecalis] 213 3e-54 sp|P29753|VANC_ENTGA VANCOMYCIN C-TYPE RESISTANCE PROTEIN VANC (... 211 7e-54 pir||T51694 D-alanine--D-alanine ligase (EC 6.3.2.4) [imported] ... 201 6e-51 emb|CAB95026.1| (AJ237851) D-alanine-D-alanine ligase [Prochloro... 199 4e-50 ref|NP_212334.1| (NC_001318) D-alanine--D-alanine ligase (ddlA) ... 195 6e-49 ref|NP_245081.1| (NC_002663) DdlB [Pasteurella multocida] >gi|13... 179 3e-44 emb|CAC84690.1| (AJ306727) D-Ala:D-Lac ligase [Enterococcus faec... 177 1e-43 ref|NP_439298.1| (NC_000907) D-alanine--D-alanine ligase (ddlB) ... 177 2e-43 emb|CAC84688.1| (AJ306726) D-Ala:D-Lac ligase [Enterococcus faec... 176 4e-43 ref|NP_414634.1| (NC_000913) D-alanine-D-alanine ligase B, affec... 175 7e-43 ref|NP_285788.1| (NC_002655) D-alanine-D-alanine ligase B, affec... 174 2e-42 pdb|1IOW| Complex Of Y216f D-Ala:d-Ala Ligase With Adp And A P... 173 2e-42 ref|NP_252890.1| (NC_002516) D-alanine-D-alanine ligase A [Pseud... 173 2e-42 ref|NP_220281.1| (NC_000117) UDP-N-acetylmuramate-alanine ligase... 171 1e-41 ref|NP_454742.1| (NC_003198) D-alanine:D-alanine ligase B [Salmo... 169 3e-41 ref|NP_459135.1| (NC_003197) D-alanine-D-alanine ligase B, affec... 169 6e-41 ref|NP_520963.1| (NC_003295) PROBABLE D-ALANINE--D-ALANINE LIGAS... 160 1e-38 gb|AAB62175.1| (U94527) vancomycin resistance protein B [Enteroc... 160 2e-38 ref|NP_232962.1| (NC_002506) D-alanine--D-alanine ligase [Vibrio... 159 3e-38 gb|AAK28428.1|AF251259_1 (AF251259) D-alanine-D-X ligase VanD4 [... 157 1e-37 gb|AAB62174.1| (U94526) vancomycin resistance protein B [Enteroc... 157 2e-37 ref|NP_404198.1| (NC_003143) D-alanine--D-alanine ligase B [Yers... 157 2e-37 gb|AAB62176.1| (U94528) vancomycin resistance protein B [Enteroc... 157 2e-37 ref|NP_296522.1| (NC_002620) UDP-N-acetylmuramate--alanine ligas... 157 2e-37 gb|AAC16915.1| (U91914) D-alanine:D-alanine ligase [Streptococcu... 157 2e-37 sp|Q9PLG1|MUDD_CHLMU MURC/DDL BIFUNCTIONAL ENZYME [INCLUDES: UDP... 157 2e-37 gb|AAB41851.1| (U69162) D-Alanine:D-Alanine ligase [Streptococcu... 156 2e-37 gb|AAA60989.1| (L29641) D-alanine-D-alanine ligase-related enzym... 156 2e-37 gb|AAA87681.1| (U08911) putative D-alanine:D-alanine ligase [Lac... 156 3e-37 gb|AAB41853.1| (U69164) D-Alanine:D-Alanine ligase [Streptococcu... 156 3e-37 gb|AAB41855.1| (U69166) D-Alanine:D-Alanine ligase [Streptococcu... 156 3e-37 sp|P95803|DDL_STRMU PUTATIVE D-ALANINE--D-ALANINE LIGASE (D-ALAN... 156 3e-37 ref|NP_386277.1| (NC_003047) PROBABLE D-ALANINE--D-ALANINE LIGAS... 155 5e-37 gb|AAA60988.1| (L29640) D-alanine-D-alanine ligase-related enzym... 155 6e-37 gb|AAF37349.1|AF170810_1 (AF170810) D-alanine:D-alanine ligase [... 154 9e-37 gb|AAB17901.1| (U39777) D-alanine:D-alanine ligase [Enterococcus... 154 1e-36 gb|AAB17900.1| (U39775) D-alanine:D-alanine ligase [Enterococcus... 154 1e-36 gb|AAF37343.1|AF170804_1 (AF170804) D-alanine:D-alanine ligase [... 154 1e-36 gb|AAA87682.1| (U08912) putative D-alanine:D-alanine ligase [Lac... 154 1e-36 gb|AAA24785.1| (L15304) vanB2 ORF [Enterococcus faecalis] 154 1e-36 gb|AAB49636.1| (U72704) vancomycin resistance protein [Enterococ... 154 2e-36 gb|AAB41852.1| (U69163) D-Alanine:D-Alanine ligase [Streptococcu... 153 2e-36 gb|AAB62519.1| (U91912) D-alanine:D-alanine ligase [Streptococcu... 153 2e-36 ref|NP_242487.1| (NC_002570) D-alanyl-D-alanine ligase A [Bacill... 152 4e-36 gb|AAB41856.1| (U69167) D-Alanine:D-Alanine ligase [Streptococcu... 151 7e-36 ref|NP_225100.1| (NC_000922) Muramate-Ala Ligase & D-Ala-D-Ala L... 151 1e-35 gb|AAF37347.1|AF170808_1 (AF170808) D-alanine:D-alanine ligase [... 151 1e-35 gb|AAF37344.1|AF170805_1 (AF170805) D-alanine:D-alanine ligase [... 151 1e-35 gb|AAF37348.1| (AF170809) D-alanine:D-alanine ligase [Enterococc... 150 1e-35 gb|AAB17899.1| (U39778) D-alanine:D-alanine ligase [Enterococcus... 150 2e-35 emb|CAA55651.1| (X79049) vanA2 [Oerskovia turbata] 150 2e-35 gb|AAF37342.1|AF170803_1 (AF170803) D-alanine:D-alanine ligase [... 149 3e-35 ref|NP_253100.1| (NC_002516) D-alanine--D-alanine ligase [Pseudo... 148 6e-35 gb|AAB62520.1| (U91913) D-alanine:D-alanine ligase [Streptococcu... 148 1e-34 pir||S36974 hypothetical protein 8 (atpB 5' region) - Synechococ... 147 2e-34 gb|AAA87683.1| (U08913) putative D-alanine:D-alanine ligase [Lac... 147 2e-34 sp|O51927|DDL_BUCAP D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 147 2e-34 ref|NP_103112.1| (NC_002678) D-alanyl-D-alanine ligase [Mesorhiz... 147 2e-34 gb|AAB17897.1| (U39774) D-alanine:D-alanine ligase [Enterococcus... 144 2e-33 ref|NP_355054.1| (NC_003062) AGR_C_3788p [Agrobacterium tumefaci... 142 4e-33 ref|NP_532764.1| (NC_003304) D-alanine:D-alanine ligase [Agrobac... 142 5e-33 ref|NP_359970.1| (NC_003103) D-alanine--D-alanine ligase [EC:6.3... 140 2e-32 ref|NP_539499.1| (NC_003317) D-ALANINE--D-ALANINE LIGASE [Brucel... 140 2e-32 gb|AAK97387.1|AF363615_1 (AF363615) D-alanine:D-alanine ligase 2... 138 1e-31 ref|NP_220634.1| (NC_000963) D-ALANINE--D-ALANINE LIGASE (ddlB) ... 137 1e-31 gb|AAB17898.1| (U39776) D-alanine:D-alanine ligase [Enterococcus... 136 3e-31 ref|NP_298089.1| (NC_002488) D-alanine--D-alanine ligase B [Xyle... 134 1e-30 ref|NP_273472.1| (NC_003112) D-alanine--D-alanine ligase [Neisse... 134 2e-30 ref|NP_284760.1| (NC_003116) D-alanine--D-alanine ligase B [Neis... 134 2e-30 ref|NP_213366.1| (NC_000918) D-alanine:D-alanine ligase [Aquifex... 131 1e-29 gb|AAB41857.1| (U69168) D-Alanine:D-Alanine ligase [Streptococcu... 130 2e-29 ref|NP_228072.1| (NC_000853) D-alanine--D-alanine ligase [Thermo... 130 2e-29 pir||PN0478 vancomycin resistance-conferring protein - Enterococ... 130 2e-29 gb|AAA87680.1| (U08910) putative D-alanine:D-alanine ligase [Wei... 129 4e-29 gb|AAD45667.1|AF136925_1 (AF136925) D-alanine-D-serine ligase [E... 129 5e-29 gb|AAD53933.1|AF179611_17 (AF179611) D-alanine:D-alanine ligase ... 127 2e-28 gb|AAA60991.1| (L29639) ligase [Enterococcus flavescens] 126 3e-28 emb|CAB64494.1| (AJ387981) D-alanine--D-alanine ligase [Streptoc... 125 9e-28 emb|CAA13259.1| (AJ232256) D-alanine D-alanine ligase [Streptoco... 124 1e-27 emb|CAA13267.1| (AJ232264) D-alanine D-alanine ligase [Streptoco... 124 2e-27 emb|CAA13262.1| (AJ232259) D-alanine D-alanine ligase [Streptoco... 124 2e-27 gb|AAC83823.1| (AF098802) putative D-alanine:D-alanine ligase [P... 124 2e-27 emb|CAB60643.1| (AJ252530) D-ala,D-ala ligase [Streptococcus pne... 124 2e-27 emb|CAB16966.1| (Z99841) D-alanine:D-alanine ligase [Streptococc... 123 2e-27 emb|CAB64493.1| (AJ387980) D-alanine--D-alanine ligase [Streptoc... 123 2e-27 emb|CAB64495.1| (AJ387982) D-alanine--D-alanine ligase [Streptoc... 123 2e-27 emb|CAB60644.1| (AJ252531) D-ala,D-ala ligase [Streptococcus pne... 123 3e-27 emb|CAA13269.1| (AJ232266) D-alanine D-alanine ligase [Streptoco... 123 3e-27 emb|CAA13253.1| (AJ232250) D-alanine D-alanine ligase [Streptoco... 123 3e-27 emb|CAA13246.1| (AJ232243) D-alanine D-alanine ligase [Streptoco... 123 3e-27 emb|CAB60640.1| (AJ252527) D-ala,D-ala ligase [Streptococcus pne... 123 3e-27 emb|CAB64496.1| (AJ387983) D-alanine--D-alanine ligase [Streptoc... 123 3e-27 emb|CAB60642.1| (AJ252529) D-ala,D-ala ligase [Streptococcus pne... 123 3e-27 emb|CAB16971.1| (Z99846) D-alanine:D-alanine ligase [Streptococc... 123 3e-27 emb|CAA13256.1| (AJ232253) D-alanine D-alanine ligase [Streptoco... 123 3e-27 emb|CAA13261.1| (AJ232258) D-alanine D-alanine ligase [Streptoco... 123 3e-27 emb|CAB60645.1| (AJ252532) D-ala,D-ala ligase [Streptococcus pne... 123 3e-27 emb|CAA13276.1| (AJ232273) D-alanine D-alanine ligase [Streptoco... 123 4e-27 emb|CAB16962.1| (Z99837) D-alanine:D-alanine ligase [Streptococc... 122 4e-27 emb|CAA13579.1| (AJ233886) D-alanine D-alanine ligase [Streptoco... 122 4e-27 emb|CAA13581.1| (AJ233888) D-alanine D-alanine ligase [Streptoco... 122 4e-27 emb|CAA13247.1| (AJ232244) D-alanine D-alanine ligase [Streptoco... 122 4e-27 emb|CAA13255.1| (AJ232252) D-alanine D-alanine ligase [Streptoco... 122 4e-27 emb|CAB64497.1| (AJ387984) D-alanine--D-alanine ligase [Streptoc... 122 5e-27 emb|CAB16982.1| (Z99857) D-alanine:D-alanine ligase [Streptococc... 122 5e-27 emb|CAA13252.1| (AJ232249) D-alanine D-alanine ligase [Streptoco... 122 5e-27 emb|CAA13245.1| (AJ232242) D-alanine D-alanine ligase [Streptoco... 122 5e-27 emb|CAA94438.1| (Z70527) D-alanine:D-alanine ligase-related prot... 122 5e-27 emb|CAB60641.1| (AJ252528) D-ala,D-ala ligase [Streptococcus pne... 122 5e-27 emb|CAB16964.1| (Z99839) D-alanine:D-alanine ligase [Streptococc... 122 5e-27 emb|CAA13580.1| (AJ233887) D-alanine D-alanine ligase [Streptoco... 122 6e-27 emb|CAB16963.1| (Z99838) D-alanine:D-alanine ligase [Streptococc... 121 8e-27 emb|CAB16965.1| (Z99840) D-alanine:D-alanine ligase [Streptococc... 120 1e-26 ref|NP_421346.1| (NC_002696) D-alanine--D-alanine ligase B [Caul... 119 6e-26 gb|AAF37346.1|AF170807_1 (AF170807) D-alanine:D-alanine ligase [... 107 1e-22 ref|NP_223393.1| (NC_000921) D-ALANINE--D-ALANINE LIGASE [Helico... 107 2e-22 ref|NP_281959.1| (NC_002163) putative D-alanine--D-alanine ligas... 107 3e-22 ref|NP_207532.1| (NC_000915) D-alanine:D-alanine ligase A (ddlA)... 103 3e-21 ref|NP_444059.1| (NC_000914) Y4sG [Rhizobium sp. NGR234] >gi|249... 100 2e-20 gb|AAD20832.1| (AF125320) D-alanine:D-alanine ligase B homolog [... 98 1e-19 ref|NP_187496.1| (NC_003074) unknown protein [Arabidopsis thalia... 97 3e-19 gb|AAB49635.1| (U72705) vancomycin resistance protein [Enterococ... 82 7e-15 gb|AAF37345.1|AF170806_1 (AF170806) D-alanine:D-alanine ligase [... 81 2e-14 gb|AAB49637.1| (U72706) vancomycin resistance protein [Enterococ... 80 4e-14 dbj|BAB64428.1| (AB070704) vancomycin resistance protein C-2 [En... 77 2e-13 dbj|BAB64425.1| (AB070701) vancomycin resistance protein C-2 [En... 77 3e-13 dbj|BAB64423.1| (AB070699) vancomycin resistance protein C-2 [En... 76 5e-13 dbj|BAB64420.1| (AB070696) vancomycin resistance protein C-2 [En... 76 5e-13 dbj|BAB64426.1| (AB070702) vancomycin resistance protein C-2 [En... 76 6e-13 sp|P35660|DDL_ANACE D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 75 1e-12 dbj|BAB64422.1| (AB070698) vancomycin resistance protein C-2 [En... 74 3e-12 gb|AAB62172.1| (U94524) vancomycin resistance protein C2 [Entero... 73 4e-12 gb|AAB62171.1| (U94523) vancomycin resistance protein C2 [Entero... 72 7e-12 gb|AAB62173.1| (U94525) vancomycin resistance protein C2 [Entero... 72 8e-12 gb|AAB62170.1| (U94522) vancomycin resistance protein C2 [Entero... 71 2e-11 gb|AAB62169.1| (U94521) vancomycin resistance protein C2 [Entero... 70 3e-11 ref|NP_187495.1| (NC_003074) hypothetical protein [Arabidopsis t... 64 2e-09 pir||S62738 D-alanylalanine ligase homolog - Thermotoga maritima... 63 5e-09 emb|CAC35265.1| (AJ290363) D-alanin-D-alanin ligase [Campylobact... 62 6e-09 emb|CAC35260.1| (AJ290358) D-alanin-D-alanin ligase [Campylobact... 62 6e-09 emb|CAC35258.1| (AJ290356) D-alanin-D-alanin ligase [Campylobact... 62 7e-09 emb|CAC35262.1| (AJ290360) D-alanin-D-alanin ligase [Campylobact... 62 8e-09 emb|CAC35254.1| (AJ290352) D-alanin-D-alanin ligase [Campylobact... 62 8e-09 emb|CAC35255.1| (AJ290353) D-alanin-D-alanin ligase [Campylobact... 62 9e-09 emb|CAC35259.1| (AJ290357) D-alanin-D-alanin ligase [Campylobact... 61 1e-08 emb|CAC35261.1| (AJ290359) D-alanin-D-alanin ligase [Campylobact... 61 2e-08 emb|CAC35263.1| (AJ290361) D-alanin-D-alanin ligase [Campylobact... 60 2e-08 emb|CAC35256.1| (AJ290354) D-alanin-D-alanin ligase [Campylobact... 60 3e-08 emb|CAB64513.1| (AJ387995) D-alanine--D-alanine ligase [Streptoc... 52 7e-06 emb|CAB64527.1| (AJ388002) D-alanine--D-alanine ligase [Streptoc... 52 7e-06 emb|CAB64535.1| (AJ388006) D-alanine--D-alanine ligase [Streptoc... 52 7e-06 emb|CAB64501.1| (AJ387989) D-alanine--D-alanine ligase [Streptoc... 50 2e-05 emb|CAB64517.1| (AJ387997) D-alanine--D-alanine ligase [Streptoc... 50 2e-05 emb|CAB64539.1| (AJ388008) D-alanine--D-alanine ligase [Streptoc... 50 4e-05 ref|NP_348167.1| (NC_003030) Uncharacterized ATP-grasp enzyme [C... 50 5e-05 emb|CAB64515.1| (AJ387996) D-alanine--D-alanine ligase [Streptoc... 49 7e-05 emb|CAB64531.1| (AJ388004) D-alanine--D-alanine ligase [Streptoc... 49 7e-05 emb|CAB64521.1| (AJ387999) D-alanine--D-alanine ligase [Streptoc... 49 9e-05 ref|NP_245985.1| (NC_002663) unknown [Pasteurella multocida] >gi... 48 2e-04 emb|CAC11141.1| (AJ250581) NikS protein [Streptomyces tendae] 47 4e-04 gb|AAB09711.1| (U70673) phosphoribosylaminoimidazole carboxylase... 46 5e-04 sp|Q92233|PUR6_CRYNE PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE (A... 46 5e-04 gb|AAC98316.1| (AF112302) phosphoribosylaminoimidazole carboxyla... 46 5e-04 gb|AAK31311.1|AF324792_1 (AF324792) phosphoribosylaminoimidazole... 45 0.001 ref|NP_171808.1| (NC_003070) putative 3-methylcrotonyl-CoA carbo... 45 0.001 ref|NP_047031.1| (NC_001905) PCACA; L549.5 [Leishmania major] >g... 45 0.002 sp|P20054|PYR1_DICDI PROTEIN PYR1-3 [INCLUDES: GLUTAMINE-DEPENDE... 43 0.005 pir||S23738 pyr1-3 protein - slime mold (Dictyostelium discoideu... 43 0.006 gb|AAA37062.1| (J05503) carbamoyl-phosphate synthetase (E.C.6.3.... 42 0.010 sp|P08955|PYR1_MESAU CAD PROTEIN [INCLUDES: GLUTAMINE-DEPENDENT ... 42 0.010 ref|NP_004332.1| (NM_004341) carbamoyl-phosphate synthetase 2, a... 42 0.014 ref|NP_455402.1| (NC_003198) ribosomal protein S6 modification p... 41 0.020 gb|AAG39981.1|AF302776_1 (AF302776) phosphoribosyl aminoimidazol... 40 0.025 ref|NP_106624.1| (NC_002678) hypothetical protein [Mesorhizobium... 40 0.031 ref|NP_248492.1| (NC_000909) phosphoribosylglycinamide formyltra... 40 0.032 gb|AAF32338.1|AF218939_6 (AF218939) acetyl-CoA carboxylase [Baci... 40 0.040 ref|NP_485342.1| (NC_003272) phosphoribosylglycinamide formyltra... 40 0.040 emb|CAB56843.1| (X99978) carbamoyl-phosphate synthase large subu... 40 0.044 gb|AAK53061.1| (AF322179) nikkomycin biosynthesis protein SanS [... 40 0.047 gb|AAA67356.1| (U12536) 3-methylcrotonyl-CoA carboxylase precurs... 40 0.051 sp|P46537|CARB_BACCL CARBAMOYL-PHOSPHATE SYNTHASE, PYRIMIDINE-SP... 39 0.053 gb|AAL48287.1|AF452495_1 (AF452495) aminoimidazole ribonucleotid... 39 0.054 gb|AAD25800.1|AC006550_8 (AC006550) Identical to gb|U12536 3-met... 39 0.054 sp|Q91437|PYR1_SQUAC CAD PROTEIN [INCLUDES: GLUTAMINE-DEPENDENT ... 39 0.067 pir||T44813 biotin carboxylase (EC 6.3.4.14) yngH [imported] - B... 39 0.072 ref|NP_228257.1| (NC_000853) phosphoribosylaminoimidazole carbox... 39 0.085 ref|NP_376481.1| (NC_003106) 513aa long hypothetical biotin carb... 39 0.090 ref|NP_441123.1| (NC_000911) glycinamide ribonucleotide transfor... 39 0.11 ref|NP_465299.1| (NC_003210) phosphoribosylaminoimidazole carbox... 39 0.11 ref|NP_486782.1| (NC_003272) phosphoribosyl aminoimidazole carbo... 38 0.13 ref|NP_277017.1| (NC_000916) biotin carboxylase [Methanothermoba... 38 0.14 ref|NP_376039.1| (NC_003106) 285aa long conserved hypothetical p... 38 0.16 ref|NP_471220.1| (NC_003212) phosphoribosylaminoimidazole carbox... 38 0.19 ref|NP_214438.1| (NC_000918) carbamoyl-phosphate synthase large ... 37 0.20 emb|CAB67718.1| (AJ271405) putative carbamoyl-phosphate-syntheta... 37 0.28 pir||T44419 carbamoyl-phosphate synthase (glutamine-hydrolyzing)... 37 0.28 ref|NP_441646.1| (NC_000911) glycinamide ribonucleotide syntheta... 37 0.30 pir||T06360 methylcrotonoyl-CoA carboxylase (EC 6.4.1.4) biotin ... 37 0.32 ref|NP_268449.1| (NC_002737) phosphoribosylaminoimidazole carbox... 37 0.32 sp|P50504|PUR6_DEBOC PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE (A... 37 0.34 gb|AAA68280.1| (M27174) carbamyl phosphate synthetase [Saccharom... 37 0.34 ref|NP_012405.1| (NC_001142) First and second steps of pyrimidin... 37 0.34 gb|AAA53140.1| (U08469) 3-methylcrotonyl-CoA carboxylase, biotin... 37 0.35 emb|CAA60825.1| (X87371) carbamyl phosphate synthetase [Saccharo... 37 0.35 ref|NP_465360.1| (NC_003210) highly similar to carbamoyl-phospha... 37 0.42 ref|NP_539717.1| (NC_003317) PROPIONYL-COA CARBOXYLASE ALPHA CHA... 36 0.49 ref|NP_248224.1| (NC_000909) biotin carboxylase (accC) [Methanoc... 36 0.53 gb|AAC78719.1| (U43091) carbamoylphosphate synthetase heavy subu... 36 0.54 sp|P77886|CARB_LACPL CARBAMOYL-PHOSPHATE SYNTHASE, PYRIMIDINE-SP... 36 0.68 gb|AAF97933.1|AF279247_1 (AF279247) cyanophycin synthetase [Cyan... 36 0.69 ref|NP_540842.1| (NC_003317) acetyl-CoA carboxylase alpha chain ... 36 0.73 ref|NP_267519.1| (NC_002662) carbamoylphosphate synthetase [Lact... 36 0.74 ref|NP_464882.1| (NC_003210) acetyl-CoA carboxylase subunit (bio... 35 0.77 ref|NP_244521.1| (NC_002570) BH3654~unknown conserved protein [B... 35 0.78 ref|NP_470730.1| (NC_003212) acetyl-CoA carboxylase subunit (bio... 35 0.78 ref|NP_243402.1| (NC_002570) carbamoyl-phosphate synthetase (cat... 35 0.99 ref|NP_471283.1| (NC_003212) highly similar to carbamoyl-phospha... 35 1.1 emb|CAB87214.1| (AL163641) acetyl/propionyl CoA carboxylase alph... 35 1.2 gb|AAB92588.1| (AF038548) pyruvate carboxylase [Corynebacterium ... 35 1.3 ref|NP_245990.1| (NC_002663) Pur [Pasteurella multocida] >gi|127... 35 1.4 ref|NP_243653.1| (NC_002570) acetyl-CoA carboxylase biotin carbo... 35 1.4 ref|NP_444046.1| (NC_000914) Y4rH [Rhizobium sp. NGR234] >gi|249... 35 1.5 pir||T39898 carbamoyl-phosphate synthase (glutamine-hydrolyzing)... 35 1.5 emb|CAA04376.1| (AJ000883) purK [Lactococcus lactis] 34 1.8 ref|NP_472240.1| (NC_003212) similar to gamma-glutamylcysteine s... 34 1.8 ref|NP_267667.1| (NC_002662) phosphoribosylaminoimidazole carbox... 34 1.8 ref|NP_534077.1| (NC_003305) propionyl-coenzyme A carboxylase, a... 34 1.9 sp|Q09794|PYR1_SCHPO URA1 PROTEIN [INCLUDES: GLUTAMINE-DEPENDENT... 34 1.9 pir||S65074 pyrimidine synthesis protein URA1 - fission yeast (... 34 1.9 ref|NP_286618.1| (NC_002655) ribosomal protein S6 modification p... 34 1.9 ref|NP_357031.1| (NC_003063) AGR_L_580GMp [Agrobacterium tumefac... 34 2.0 ref|NP_389706.1| (NC_000964) similar to biotin carboxylase [Baci... 34 2.0 ref|NP_437243.1| (NC_003078) putative methylcrotonoyl-CoA carbox... 34 2.1 ref|NP_219627.1| (NC_000117) Biotin Carboxylase [Chlamydia trach... 34 2.1 ref|NP_385425.1| (NC_003047) PROBABLE BIOTIN CARBOXYLASE PROTEIN... 34 2.3 pir||T30518 carbamoyl-phosphate synthase (ammonia) (EC 6.3.4.16)... 34 2.5 ref|NP_388525.1| (NC_000964) phosphoribosylaminoimidazole carbox... 34 2.5 dbj|BAB16297.1| (AB039884) acetyl-CoA carboxylase biotin carboxy... 34 2.5 ref|NP_107983.1| (NC_002678) 3-methylcrotonyl-CoA carboxylase bi... 33 3.1 gb|AAD43968.1|AF119250_1 (AF119250) carbamoyl-phosphate syntheta... 33 3.3 dbj|BAA20124.1| (D88151) D-alanine:D-alanine ligase [Clostridium... 33 3.6 dbj|BAB01486.1| (AB034950) phosphoribosyl-5-aminoimidazole carbo... 33 3.6 gb|AAF48639.2| (AE003503) CG18572 gene product [Drosophila melan... 33 4.7 ref|NP_466292.1| (NC_003210) similar to gamma-glutamylcysteine s... 33 4.7 ref|NP_437004.1| (NC_003078) HYPOTHETICAL PROTEIN [Sinorhizobium... 33 5.4 gb|AAF80469.1|AF163150_1 (AF163150) acetyl-CoA carboxylase [Glyc... 33 5.5 pir||T06279 acetyl-CoA carboxylase (EC 6.4.1.2), biotin carboxyl... 33 5.6 ref|NP_396450.1| (NC_003064) AGR_pAT_764p [Agrobacterium tumefac... 33 6.1 emb|CAC07987.1| (AJ288949) cyanphycin synthetase [Synechococcus ... 33 6.2 sp|Q92210|PUR6_CANAL PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE (A... 32 7.0 gb|AAC49742.1| (U75582) phosphoribosylaminoimidazole carboxylase... 32 7.0 ref|NP_241490.1| (NC_002570) phosphoribosylaminoimidazole carbox... 32 7.3 gb|AAG10491.1|AF279106_53 (AF279106) predicted acetyl-CoA carbox... 32 7.5 ref|NP_518386.1| (NC_003295) PROBABLE ACYL-COA CARBOXYLASE ALPHA... 32 8.3 ref|NP_012643.1| (NC_001142) carbamyl phosphate synthetase; Cpa2... 32 8.4 pir||T02431 acetyl-CoA carboxylase (EC 6.4.1.2), biotin carboxyl... 32 9.0 pir||T07093 acetyl-CoA carboxylase (EC 6.4.1.2) biotin carboxyla... 32 9.0 ref|NP_241998.1| (NC_002570) biotin carboxylase [Bacillus halodu... 32 9.6 >ref|NP_286119.1| (NC_002655) Z0477 gene product [Escherichia coli O157:H7 EDL933] ref|NP_308458.1| (NC_002695) D-alanine-D-alanine ligase A [Escherichia coli O157:H7] ref|NP_414915.1| (NC_000913) D-alanine-D-alanine ligase A [Escherichia coli K12] sp|P23844|DDLA_ECOLI D-ALANINE--D-ALANINE LIGASE A (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||CEECDA D-alanine--D-alanine ligase (EC 6.3.2.4) A - Escherichia coli gb|AAA23671.1| (M58467) D-alanine:D-alanine ligase A [Escherichia coli] gb|AAB18104.1| (U73857) D-alanine--D-alanine ligase A [Escherichia coli] gb|AAC73484.1| (AE000144) D-alanine-D-alanine ligase A [Escherichia coli K12] gb|AAG54727.1|AE005217_5 (AE005217) Z0477 gene product [Escherichia coli O157:H7 EDL933] dbj|BAB33854.1| (AP002551) D-alanine-D-alanine ligase A [Escherichia coli O157:H7] Length = 364 Score = 728 bits (1878), Expect = 0.0 Identities = 364/364 (100%), Positives = 364/364 (100%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN Sbjct: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML Sbjct: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL Sbjct: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ Sbjct: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR Sbjct: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL Sbjct: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 Query: 361 KTTM 364 KTTM Sbjct: 361 KTTM 364 >ref|NP_454975.1| (NC_003198) D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica serovar Typhi] ref|NP_459375.1| (NC_003197) D-alanine-D-alanine ligase A [Salmonella typhimurium LT2] sp|P15051|DDLA_SALTY D-alanine--D-alanine ligase A (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) pir||CEEBDT D-alanine--D-alanine ligase (EC 6.3.2.4) A - Salmonella typhimurium gb|AAA27056.1| (M20793) D-alanine:D-alanine ligase (EC 6.3.2.4) [Salmonella typhimurium] gb|AAL19334.1| (AE008713) D-alanine-D-alanine ligase A [Salmonella typhimurium LT2] emb|CAD08835.1| (AL627266) D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica serovar Typhi] Length = 364 Score = 663 bits (1710), Expect = 0.0 Identities = 327/364 (89%), Positives = 344/364 (93%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDK+RFDVVLLGIDK GQWHV+DA NYL N Sbjct: 1 MAKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQN 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 ADDPAHIALRPSA SLAQVPGKH+HQLI+AQNGQPLPTVDVIFPIVHGTLGEDGSLQGML Sbjct: 61 ADDPAHIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 RVANLPFVGSDVL+SAACMDKDV KRLLRDAGLNIAPFITLTR NRH SFAEVES+LGL Sbjct: 121 RVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGL 180 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 PLFVKPANQGSSVGVSKV +E QY AV LAFEFDHKV+VEQGIKGREIECAVLGNDNPQ Sbjct: 181 PLFVKPANQGSSVGVSKVANEAQYQQAVALAFEFDHKVVVEQGIKGREIECAVLGNDNPQ 240 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 ASTCGEIVL S+FYAYDTKYID++GA+VVVPA I E+NDKIRAIA+QAYQTLGCAGMAR Sbjct: 241 ASTCGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMAR 300 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 VDVFLT +NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLI+RLIELALERH A+NAL Sbjct: 301 VDVFLTADNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELALERHTANNAL 360 Query: 361 KTTM 364 KTTM Sbjct: 361 KTTM 364 >ref|NP_103309.1| (NC_002678) D-alanine-D-alanine ligase A [Mesorhizobium loti] dbj|BAB49095.1| (AP002998) D-alanine-D-alanine ligase A [Mesorhizobium loti] Length = 357 Score = 296 bits (757), Expect = 3e-79 Identities = 160/359 (44%), Positives = 228/359 (62%), Gaps = 9/359 (2%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 EK RV I++GG+SAEH+VS SA N++ AID++R++VV + I + G+W + +S Sbjct: 3 EKTRVAILYGGRSAEHDVSRLSAANVLKAIDRTRYEVVPIAISRDGRWRLQPSSE---AG 59 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 D A + +A +PG + +NG+ VDV+FP++HG GEDGS+QG Sbjct: 60 ADGAGAQVPEDGVEVALLPGGKGRLVALTKNGEQPDPVDVVFPVLHGPFGEDGSVQGYAE 119 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 VA++ +VG +LASAA MDKDV KRLLR+AGL +A +T+ + + SF E+ LGLP Sbjct: 120 VADVAYVGCGILASAAAMDKDVAKRLLREAGLAVARSVTVLKGDVG--SFQEIAGALGLP 177 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL--GNDNP 239 F KPA QGSS GVSKV + + AV+ A +D K ++E+ + GREIEC+VL + + Sbjct: 178 FFAKPARQGSSFGVSKVHDRDGFEQAVETALRYDSKALIEEFVDGREIECSVLERADGSL 237 Query: 240 QASTCGEIVLTSD--FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 S GEI+ FY Y+ KY D +GA V VPA + ++ + +A +A++ LGC Sbjct: 238 TVSPPGEIIPADKHGFYTYEAKYFDAEGAVVKVPADVPADVVARTSEMAARAFRALGCEA 297 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 MARVD FL + +++NE+NTLPGFT+ISMY K A+G+GY+ +I LIE AL RH A Sbjct: 298 MARVDFFLRADGSLLVNEVNTLPGFTDISMYAKALAAAGIGYSKVIDVLIEHALARHRA 356 >ref|NP_372607.1| (NC_002758) D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus Mu50] ref|NP_375191.1| (NC_002745) D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus N315] dbj|BAB43170.1| (AP003136) D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus N315] dbj|BAB58245.1| (AP003364) D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus Mu50] Length = 356 Score = 293 bits (750), Expect = 2e-78 Identities = 153/358 (42%), Positives = 227/358 (62%), Gaps = 17/358 (4%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K + IVFGGKSAEHEVS+ +A+N+++AIDK ++ V ++ I G W + + Sbjct: 1 MTKENICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIK 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + D H+ A ++Q+ L ++ +GQP D +FP++HG GEDG++QG+ Sbjct: 61 STDELHLE-NGEALEISQL-------LKESSSGQPY---DAVFPLLHGPNGEDGTIQGLF 109 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN----RHNISFAEVES 176 V ++P+VG+ VL++A+ MDK V K+L GL P+I+ R+ HNI V Sbjct: 110 EVLDVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNI-LKLVND 168 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN 236 KL P+FVKPAN GSSVG+SK +E + + AF+FD K+++EQG+ REIE AVLGN Sbjct: 169 KLNYPVFVKPANLGSSVGISKCNNEAELKEGIKEAFQFDRKLVIEQGVNAREIEVAVLGN 228 Query: 237 DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 D P+A+ GE+V FY Y +KY D ++ +PA + ++ +R +A++A++ C+ Sbjct: 229 DYPEATWPGEVVKDVAFYDYKSKYKDGK-VQLQIPADLDEDVQLTLRNMALEAFKATDCS 287 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 G+ R D F+T +N++ INE N +PGFT SMYPKLW+ GL Y +LIT+LIELA ERH Sbjct: 288 GLVRADFFVTEDNQIYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELAKERH 345 >ref|NP_485023.1| (NC_003272) D-alanyl-D-alanine ligase [Nostoc sp. PCC 7120] dbj|BAB72937.1| (AP003584) D-alanyl-D-alanine ligase [Nostoc sp. PCC 7120] Length = 364 Score = 289 bits (740), Expect = 2e-77 Identities = 162/364 (44%), Positives = 229/364 (62%), Gaps = 17/364 (4%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAI----DKSRFDVVLLGIDKQGQWHVSDASNYLL 59 +RVG++FGG+S EHEVS+ SA+ I A+ + S+++++ I K G+W +A +L Sbjct: 1 MRVGLLFGGRSGEHEVSISSARAIASALSAGENASKYEILPFYIHKDGRWLAGEAPQQVL 60 Query: 60 NADDPAHIALRPSATSLAQ--VPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ 117 + P L S +S A+ + + L Q+ + VDV FPI+HG GEDG++Q Sbjct: 61 KSGAP---LLESSNSSPAENNLVNSQQQTLERWQSPSQVAEVDVWFPILHGPNGEDGTIQ 117 Query: 118 GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN--RHNISFA--- 172 G+L + PFVGS VL SA MDK K AGL + +TRA + F Sbjct: 118 GLLTLMQTPFVGSGVLGSALGMDKIAMKMAFEQAGLPQVKYKAVTRAQIWSNPCVFPKLC 177 Query: 173 -EVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 E+E+ LG P FVKPAN GSSVG+SKV S ++ A+D A +D ++I+E G+ RE+EC Sbjct: 178 DEIEASLGYPCFVKPANLGSSVGISKVRSRQELEDALDNAANYDRRIIIEAGVAAREVEC 237 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 AVLGND PQAST GEI SDFY Y+TKY A +++PA I +I+ +I+ +A+QA+ Sbjct: 238 AVLGNDQPQASTVGEITFNSDFYDYETKYT-AGKADLLIPAIIPDDISRQIQNMALQAFA 296 Query: 292 TLGCAGMARVDVF-LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + AG+ARVD F + EV+INEINTLPGFT SMYP+LW SG+ + +L+ +L++LA Sbjct: 297 AVDAAGLARVDFFYVEATGEVLINEINTLPGFTATSMYPQLWAHSGIPFPELVDKLVQLA 356 Query: 351 LERH 354 +ERH Sbjct: 357 IERH 360 >ref|NP_388337.1| (NC_000964) D-alanyl-D-alanine ligase A [Bacillus subtilis] sp|P96612|DDL_BACSU D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||D69613 D-alanine--D-alanine ligase (EC 6.3.2.4) A ddlA - Bacillus subtilis dbj|BAA19293.1| (AB001488) PROBABLE D-ALANINE--D-ALANINE LIGASE A [Bacillus subtilis] emb|CAB12263.1| (Z99106) D-alanyl-D-alanine ligase A [Bacillus subtilis] Length = 354 Score = 289 bits (740), Expect = 3e-77 Identities = 159/365 (43%), Positives = 225/365 (61%), Gaps = 22/365 (6%) Query: 9 VFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQW-----HVSDASNYLLNADD 63 ++GGKSAEH VSLQ+A ++ A++ +FD+ + I ++G+W SN + + Sbjct: 1 MYGGKSAEHNVSLQTALAVIKALNTEKFDIHPIYITEKGEWVRGARLTEPVSNVKMLQFE 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 A P+A + P Q QN +DV+FP++HG GEDG++QGML + Sbjct: 61 QGGSAFSPAALNQEMFP-----QEASQQN----EAIDVVFPLLHGPNGEDGTIQGMLELL 111 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITL-----TRANRHNISFAEVESKL 178 N+P+VG+ VLAS+A MDK V K L GL A + TR+ + S EVE +L Sbjct: 112 NIPYVGNGVLASSAGMDKVVMKHLFAQVGLAQAKYAAFLKKDWTRSPKE--SCEEVEQEL 169 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 G P FVKPAN GSSVG+SK + E+ A +LAF++D KV+VE+GI GREIE VLGND+ Sbjct: 170 GYPCFVKPANLGSSVGISKCRNREELQKAFELAFQYDRKVVVEEGINGREIEIGVLGNDD 229 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 P+ S GEI +DFY Y KY D D +++PA + E I +A++A++ + +G+ Sbjct: 230 PKCSVVGEIAPKTDFYDYKAKYEDGD-TDLMIPAIVTDEEYATISDMAIKAFKAIDGSGL 288 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 R D FLT + EV+INE+NT+PGFT SM+P LW+ +G+ Y DLI +L+ELA ERHA Sbjct: 289 VRADFFLTADGEVLINEVNTMPGFTPFSMFPLLWKEAGVEYADLIEQLVELAKERHAEKQ 348 Query: 359 ALKTT 363 +K T Sbjct: 349 LIKHT 353 >ref|NP_539644.1| (NC_003317) D-ALANINE--D-ALANINE LIGASE A [Brucella melitensis] gb|AAL51908.1| (AE009514) D-ALANINE--D-ALANINE LIGASE A [Brucella melitensis] Length = 366 Score = 286 bits (732), Expect = 2e-76 Identities = 151/357 (42%), Positives = 229/357 (63%), Gaps = 16/357 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K+R+ ++FGG+SAEH+VS+ SA N+++A+D ++++ V + + + GQW +S N L + Sbjct: 18 KMRIVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGAL--E 75 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPT--VDVIFPIVHGTLGEDGSLQGML 120 P+ S L VPG ++ G P +D+IFP++HG GEDG++QG+ Sbjct: 76 KPS------SGAELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLA 129 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 +VA +P G + SA +DKD+ KRL+ +AGL+ A +T+TR +F+ +E LGL Sbjct: 130 QVARVPLAGCGIPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVP--AFSALEQALGL 187 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+F+KPA QGSSVGV KV +E Y A+ F +D K++ E+ I+ RE+EC VL ++ Sbjct: 188 PIFIKPARQGSSVGVHKVVTEADYQAAMSDGFIYDDKLLAEEFIQAREVECGVLEDEGGA 247 Query: 241 --ASTCGEIVLTSD--FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 S GEIV FY+YD KYID DG ++ VPA + ++ ++IRAIA +A++ LGC Sbjct: 248 LFVSRAGEIVPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCD 307 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 MARVD F+T + +V+NEINT+PGFT++SMY K+ SG+ Y ++I RL+ L R Sbjct: 308 SMARVDFFVTADRRIVLNEINTIPGFTDMSMYFKVMAVSGVSYPEIINRLVAHGLAR 364 >ref|NP_294085.1| (NC_001263) D-alanine--D-alanine ligase [Deinococcus radiodurans] pir||D75529 D-alanine--D-alanine ligase - Deinococcus radiodurans (strain R1) gb|AAF09941.1|AE001896_6 (AE001896) D-alanine--D-alanine ligase [Deinococcus radiodurans] Length = 339 Score = 276 bits (705), Expect = 3e-73 Identities = 158/362 (43%), Positives = 228/362 (62%), Gaps = 38/362 (10%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K R+ ++ GG+S EHEVSL+SA++++ A+ + +FDV + I KQG+W Sbjct: 2 KRRILLLAGGQSGEHEVSLRSARSVLAALPRDQFDVTPVVISKQGRW------------- 48 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPL-------PTVDVIFPIVHGTLGEDGS 115 L P+ T A G + +Q G + D +FP++HG +GEDG+ Sbjct: 49 ------LPPTETQKALETG------VSSQGGDLMLHRAAAAEGYDAVFPLLHGPMGEDGT 96 Query: 116 LQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGL-NIAPFITLTRANRHNISFAEV 174 +QG+L +A +PFVGS VL SA MDK +TK++L AG+ +A + + R + Sbjct: 97 IQGLLTLAGIPFVGSGVLGSAVSMDKVMTKQVLDSAGIPQVAWRLAVRREWQQTPDAVRA 156 Query: 175 E-SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGI--KGREIEC 231 ++LG PLFVKPAN GSSVG+SKV S E+ A+ LAF D +VI+E K RE+E Sbjct: 157 RAAELGYPLFVKPANLGSSVGISKVGSPEELDAALTLAFGLDRRVILEAMTPHKPREVEV 216 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 +LGND P AS GE+ +DFY Y+TKY E A++ +PA I PE++++IR A++A++ Sbjct: 217 GILGNDVPVASPVGELSFDADFYDYETKYT-EGRAEMHIPARIPPEVSERIRTEALRAFR 275 Query: 292 TLGCAGMARVDVFLTPEN-EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 L CAG+ARVD F E E+ +NE+NT+PGFT SMYPKL++A+GL Y++L+TRL+ELA Sbjct: 276 ALDCAGLARVDFFYVEETGELFLNEVNTMPGFTTTSMYPKLFEAAGLSYSELVTRLVELA 335 Query: 351 LE 352 LE Sbjct: 336 LE 337 >ref|NP_464381.1| (NC_003210) D-alanine--D-alanine ligase [Listeria monocytogenes EGD-e] emb|CAC98933.1| (AL591977) D-alanine--D-alanine ligase [Listeria monocytogenes] Length = 370 Score = 275 bits (702), Expect = 6e-73 Identities = 154/369 (41%), Positives = 232/369 (62%), Gaps = 15/369 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQW----HVSDASNYL 58 K ++ +++GGKSAEHEVSLQ+A ++++A+D +F+ + I +G+W +S +++ Sbjct: 2 KTKLILLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFV 61 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118 A ++ + T + G+ + +GQ V+FP++HG GEDG++QG Sbjct: 62 EQLRFSATDTIKLATTESEKSEGEAISPAVLEADGQE----TVVFPLLHGPNGEDGTVQG 117 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFIT---LTRANRHNISFAEVE 175 + V N+P+VG+ VLAS+A MDK V K++ DAG+ P + + N AE+E Sbjct: 118 LFEVLNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVAEME 177 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 L P+FVKPAN GSSVG+SK T++++ A+ AF +D +V+VEQG+ REIE VLG Sbjct: 178 EVLTYPVFVKPANLGSSVGISKATNKKELVDAMTEAFLYDRRVVVEQGVVAREIEMGVLG 237 Query: 236 NDNPQASTCGEIV---LTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 ND P S GEI+ + FY Y KY D + A +++P + PEI ++++ A+QA+ Sbjct: 238 NDTPVCSVPGEILPEGAVATFYDYKAKYQDNNTA-LIIPTEVDPEILEQMKEYAIQAFLG 296 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 L +G+ R D FLT +N++ +NE+NT+PGFT SMYP LWQ +GL Y LI RL++LA E Sbjct: 297 LDASGLVRADFFLTEDNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLAKE 356 Query: 353 RHAADNALK 361 RHAA NALK Sbjct: 357 RHAAKNALK 365 >ref|NP_470190.1| (NC_003212) D-alanine--D-alanine ligase [Listeria innocua] emb|CAC96080.1| (AL596166) D-alanine--D-alanine ligase [Listeria innocua] Length = 370 Score = 274 bits (701), Expect = 9e-73 Identities = 158/369 (42%), Positives = 228/369 (60%), Gaps = 15/369 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K ++ +++GGKSAEHEVSLQ+A ++++A+D +F+ + I +G+W LL+ Sbjct: 2 KTKLILLYGGKSAEHEVSLQTAFSVINALDLEKFEAEPIYITNEGEW----VQGPLLSGK 57 Query: 63 DPAHIALRPSATSLAQVPG----KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118 LR SAT ++ K E + I + V+FP++HG GEDG++QG Sbjct: 58 LDFVEQLRFSATDRVKLATAESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQG 117 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFIT---LTRANRHNISFAEVE 175 + V N+P+VG+ VLAS+A MDK V K++ DAG+ P + + N E+E Sbjct: 118 LFEVLNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVTEME 177 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 L P+FVKPAN GSSVG+SK T++ + A+ AF +D +V+VEQG+ REIE VLG Sbjct: 178 EVLTYPVFVKPANLGSSVGISKATNKTELIEAMTEAFLYDRRVVVEQGVVAREIEMGVLG 237 Query: 236 NDNPQASTCGEIV---LTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 ND P S GEI+ + FY Y KY D + A +++P + PEI ++++ AVQA+ Sbjct: 238 NDTPVCSVPGEILPEGAVAKFYDYKAKYQDNNTA-LIIPTEVEPEILEQMKEYAVQAFLG 296 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 L +G+ R D FLT +N++ +NE+NT+PGFT SMYP LWQ +GL Y LI RL++LA E Sbjct: 297 LDASGLVRADFFLTEDNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLAKE 356 Query: 353 RHAADNALK 361 RHAA NALK Sbjct: 357 RHAAKNALK 365 >sp|Q9ZGN0|DDL_MYCSM D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAC99396.1| (AF077728) D-alanine:D-alanine ligase [Mycobacterium smegmatis] Length = 373 Score = 273 bits (698), Expect = 2e-72 Identities = 161/364 (44%), Positives = 228/364 (62%), Gaps = 18/364 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 + RV +V+GG+S+EH +S SA +I+ +D RF+VV +GI G W ++D L Sbjct: 10 RTRVAVVYGGRSSEHAISCVSAGSILRNLDPERFEVVAIGITPDGSWVLTDGRPETLAIT 69 Query: 63 D---PAHIALRPSATSLAQVPGKHEHQLIDAQN--GQPLPTVDVIFPIVHGTLGEDGSLQ 117 D PA + +L P + QL+ N G+ L VDV+FP++HG GEDG++Q Sbjct: 70 DGKLPAVTEASGTELALPAAPNR-SGQLLALGNGPGEILAAVDVVFPVLHGPYGEDGTIQ 128 Query: 118 GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK 177 G+L +A +P+VGS VLASAA MDK+ TK+LL GL I + L R + + E + Sbjct: 129 GLLELAGVPYVGSGVLASAAGMDKEYTKKLLAAEGLPIGDQVVL-RPGVETLDLEQRE-R 186 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL--G 235 LGLP+FVKPA GSS+GVS+VT+ ++ AV LA D KVIVE + GRE+EC VL Sbjct: 187 LGLPVFVKPARGGSSIGVSRVTAWDELPAAVALARRHDPKVIVEAAVIGRELECGVLEFP 246 Query: 236 NDNPQASTCGEIVLT------SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 + +AST GEI + FY + TKY+ ED A++ VPA + ++ D+IR +AV+A Sbjct: 247 DGRLEASTVGEIRVAGVRGREDGFYDFATKYL-EDAAELDVPAKVDDDVADEIRQLAVRA 305 Query: 290 YQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 + +GC G+ARVD FLT + VINEINT+PGFT ISMYP++W A G+ Y L+ +++ Sbjct: 306 FTAIGCQGLARVDFFLTDDGP-VINEINTMPGFTTISMYPRMWAAGGIDYPTLLAAMVDT 364 Query: 350 ALER 353 A+ R Sbjct: 365 AIAR 368 >ref|NP_349497.1| (NC_003030) D-alanine-D-alanine ligase [Clostridium acetobutylicum] gb|AAK80837.1|AE007787_3 (AE007787) D-alanine-D-alanine ligase [Clostridium acetobutylicum] Length = 343 Score = 268 bits (685), Expect = 5e-71 Identities = 145/363 (39%), Positives = 228/363 (61%), Gaps = 30/363 (8%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K +V I+FGG+S EHEVS SA +++ ID S++D+ +GI K+G+W Y +AD Sbjct: 2 KKKVAILFGGQSTEHEVSRVSAASVLRNIDTSKYDLFPIGITKKGEWF-----EYTGSAD 56 Query: 63 DPAHIALRPSATSLAQVPGKHEH-QLIDAQNGQPL---PTVDVIFPIVHGTLGEDGSLQG 118 + G+ E + + NGQ + VDV+FP++HG GEDG++QG Sbjct: 57 KIEN--------------GEWEKDEFYKSPNGQAILFNKEVDVVFPVMHGLYGEDGTIQG 102 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS----FAEV 174 + ++ +P VG VL+S+ CMDK TK +L + A ++ + A+ + S E+ Sbjct: 103 LCKLVGVPCVGPSVLSSSVCMDKVYTKYVLEHFNIKQADYV-VVHAHEYKTSKEEIIKEI 161 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL 234 E+KLG +F+KP+N GSSVG++K + ++ ++ A ++D K++VE+ + REIE AVL Sbjct: 162 ENKLGYAVFIKPSNSGSSVGITKAHNRKELEAGLEEAMKYDRKILVEEALNAREIEVAVL 221 Query: 235 GNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 GN+ P+A+ GEIV +FY Y+ KY + +K+++PA ++ E +KI+ IA++ Y+ L Sbjct: 222 GNEEPKAAIPGEIVPAKEFYDYEAKY-ENAASKLLIPANLSNENLEKIKNIAIEVYKALD 280 Query: 295 CAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 C+GM+RVD + + E+ +NE+NT+PGFT+ISMYPKLW A+G Y+ LI LIELA R Sbjct: 281 CSGMSRVDFLVDKDTTEMYLNEVNTIPGFTSISMYPKLWAAAGKDYSKLIDELIELAASR 340 Query: 354 HAA 356 + A Sbjct: 341 NNA 343 >sp|Q47827|DDL_ENTHR D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAB17904.1| (U39788) D-alanine:D-alanine ligase [Enterococcus hirae] Length = 358 Score = 267 bits (682), Expect = 1e-70 Identities = 144/354 (40%), Positives = 219/354 (61%), Gaps = 12/354 (3%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ +++GG+SAEH+VS+ SA ++++AI + + V L+ I K+GQW + + Sbjct: 1 MKITLLYGGRSAEHDVSVLSAFSVLNAIYYTYYQVQLIFISKEGQWVKGPLLTEKPTSKE 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 H+ PS G+ +I+ G+ ++FP++HG GEDG++QG L Sbjct: 61 DLHLTWDPSGKVTDGFTGR----VINP--GEIKEEGTIVFPVLHGPNGEDGTIQGFLETL 114 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT----RANRHNISFAEVESKLG 179 NLP+VG+ VL SA MDK +TK +L+ AG+ P++ + + N I F + E L Sbjct: 115 NLPYVGAGVLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKI-FDQCEGSLL 173 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+FVKPAN GSSVG+SK + E+ A+ LA+++D + IVEQGI+ REIE AVLGN++ Sbjct: 174 YPMFVKPANMGSSVGISKAENREELQNALALAYQYDSRAIVEQGIEAREIEVAVLGNEDV 233 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 + + GE+V FY YD KYI+ + ++ +PA + E+ K + A AY LG +G++ Sbjct: 234 RTTLPGEVVKDVAFYDYDAKYIN-NKIEMQIPAEVPEEVYQKAQEYAKIAYTMLGGSGLS 292 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 R D FLT +NE+ +NE+NT+PGFT SMYP LW+ GL Y DLI LI+L + R Sbjct: 293 RCDFFLTNKNELFLNELNTMPGFTQFSMYPLLWENMGLKYGDLIEELIQLGINR 346 >ref|NP_302152.1| (NC_002677) D-alanine-D-alanine ligase A [Mycobacterium leprae] emb|CAC30631.1| (AL583923) D-alanine-D-alanine ligase A [Mycobacterium leprae] Length = 384 Score = 266 bits (680), Expect = 2e-70 Identities = 157/368 (42%), Positives = 226/368 (60%), Gaps = 22/368 (5%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLL--- 59 ++RV +VFGG+S EH VS SA +I+ +D+ RFDVV +GI +G W ++D + L Sbjct: 17 RVRVAVVFGGRSNEHAVSCLSAGSILRNLDRQRFDVVAVGITPEGTWMLTDPNPDALAIA 76 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQN------GQPLPTVDVIFPIVHGTLGED 113 N PA +L P + QL+ + G+ L +VDV+FP++HG GED Sbjct: 77 NRQLPAVSCESGIELTLPADP-RRSGQLVSLSHGAGLGAGEVLTSVDVVFPVLHGPYGED 135 Query: 114 GSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAE 173 G++QG+L +A +P+VG+ VLASAA MDK+ TK+L GL ++ + T+ R R + E Sbjct: 136 GTIQGLLELARVPYVGAGVLASAAGMDKEFTKKLFAAEGLPLSAY-TVLRPLRPTLHRQE 194 Query: 174 VESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAV 233 E +L LP+FVKPA GSS+G+S+V+S Q A+ A D KVIVE + GRE+EC V Sbjct: 195 CE-RLSLPVFVKPARGGSSIGISRVSSWGQLPSAIAYARRHDPKVIVEAAVNGRELECGV 253 Query: 234 LG--NDNPQASTCGEIVLT------SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAI 285 L + AS GEI + FY + TKY+D D A++ VPA + ++ D++R + Sbjct: 254 LEMPDGTVAASAVGEIRVAGVSGSEDSFYDFTTKYLD-DAAELDVPAKVDDDVADEVRQL 312 Query: 286 AVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITR 345 A+QA++ + C G+ARVD FLT + VINEINT+PGFT SMYPKLW S + Y L+ Sbjct: 313 AIQAFRAIDCQGLARVDFFLTDDGP-VINEINTMPGFTMTSMYPKLWAVSSVDYPTLLAT 371 Query: 346 LIELALER 353 +++ AL R Sbjct: 372 MVDTALAR 379 >ref|NP_337574.1| (NC_002755) D-alanine--D-alanine ligase [Mycobacterium tuberculosis CDC1551] gb|AAK47388.1| (AE007126) D-alanine--D-alanine ligase [Mycobacterium tuberculosis CDC1551] Length = 373 Score = 266 bits (679), Expect = 3e-70 Identities = 159/363 (43%), Positives = 228/363 (62%), Gaps = 16/363 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 ++RV +VFGG+S EH +S SA +I+ +D RFDV+ +GI G W ++DA+ L Sbjct: 10 RVRVAVVFGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTIT 69 Query: 63 DPAHIALRPSATSLAQVPG--KHEHQLID--AQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118 + ++ + + +P + QL+ G+ L +VDV+FP++HG GEDG++QG Sbjct: 70 NRELPQVKSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQG 129 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 +L +A +P+VG+ VLASA MDK+ TK+LL GL + + L R R + E E +L Sbjct: 130 LLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVL-RPPRSTLHRQECE-RL 187 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG--N 236 GLP+FVKPA GSS+GVS+V+S +Q AV A D KVIVE I GRE+EC VL + Sbjct: 188 GLPVFVKPARGGSSIGVSRVSSWDQLPAAVARARRHDPKVIVEAAISGRELECGVLEMPD 247 Query: 237 DNPQASTCGEIVLT------SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 +AST GEI + FY + TKY+D D A++ VPA + ++ + IR +A++A+ Sbjct: 248 GTLEASTLGEIRVAGVRGREDSFYDFATKYLD-DAAELDVPAKVDDQVAEAIRQLAIRAF 306 Query: 291 QTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + C G+ARVD FLT + VINEINT+PGFT ISMYP++W ASG+ Y L+ +IE A Sbjct: 307 AAIDCRGLARVDFFLTDDGP-VINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIETA 365 Query: 351 LER 353 L R Sbjct: 366 LAR 368 >gb|AAB17902.2| (U39790) D-alanine:D-alanine ligase [Enterococcus faecium] Length = 358 Score = 265 bits (676), Expect = 7e-70 Identities = 141/354 (39%), Positives = 221/354 (61%), Gaps = 10/354 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ +++GG+SAEHEVS+ SA ++++AI + + V L+ I K+GQW + D Sbjct: 1 MKITLLYGGRSAEHEVSILSAFSVLNAIYYNYYQVQLVFITKEGQWVKGPLLTEKPASKD 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 H++ PS + GK +I+ G+ ++FP++HG GEDG++QG L Sbjct: 61 VLHLSWDPSGQTEEGFTGK----VINP--GEIKEEGAIVFPVLHGPNGEDGTIQGFLETL 114 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN-RHNIS--FAEVESKLGL 180 N+P+VG+ VL SA MDK +TK +L+ AG+ P++ + + + N F + E L Sbjct: 115 NMPYVGAGVLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLY 174 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+FVKPAN GSSVG++K + E+ A+ A+++D + IVEQGI+ REIE AVLGN++ + Sbjct: 175 PMFVKPANMGSSVGITKAENREELQNALATAYQYDSRAIVEQGIEAREIEVAVLGNEDVR 234 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 + GE+V FY Y+ KYI+ + ++ +PA + E+ K + A AY LG +G++R Sbjct: 235 TTLPGEVVKDVAFYDYEAKYIN-NKIEMQIPAEVPEEVYQKAQEYAKLAYTMLGGSGLSR 293 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 D FLT +NE+ +NE+N++PGFT SMYP LW+ GL Y DLI LI+L + R+ Sbjct: 294 CDFFLTNKNELFLNELNSMPGFTEFSMYPLLWENMGLKYGDLIEELIQLGMNRY 347 >ref|NP_217497.1| (NC_000962) ddlA [Mycobacterium tuberculosis H37Rv] sp|P95114|DDL_MYCTU D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||B70673 probable ddlA - Mycobacterium tuberculosis (strain H37RV) emb|CAB05431.1| (Z83018) ddlA [Mycobacterium tuberculosis H37Rv] Length = 373 Score = 265 bits (676), Expect = 7e-70 Identities = 158/363 (43%), Positives = 227/363 (62%), Gaps = 16/363 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 ++RV +VFGG+S EH +S SA +I+ +D RFDV+ +GI G W ++DA+ L Sbjct: 10 RVRVAVVFGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTIT 69 Query: 63 DPAHIALRPSATSLAQVPG--KHEHQLID--AQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118 + ++ + + +P + QL+ G+ L +VDV+FP++HG GEDG++QG Sbjct: 70 NRELPQVKSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQG 129 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 +L +A +P+VG+ VLASA MDK+ TK+LL GL + + L R R + E E +L Sbjct: 130 LLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVL-RPPRSTLHRQECE-RL 187 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG--N 236 GLP+FVKPA GSS+GVS+V+S +Q AV A D KVIVE I GRE+EC VL + Sbjct: 188 GLPVFVKPARGGSSIGVSRVSSWDQLPAAVARARRHDPKVIVEAAISGRELECGVLEMPD 247 Query: 237 DNPQASTCGEIVLT------SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 +AST GEI + FY + TKY+D D A++ VPA + ++ + IR +A++A+ Sbjct: 248 GTLEASTLGEIRVAGVRGREDSFYDFATKYLD-DAAELDVPAKVDDQVAEAIRQLAIRAF 306 Query: 291 QTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + C G+ARVD FLT + VINEINT+PGFT ISMYP++W ASG+ Y L+ +IE Sbjct: 307 AAIDCRGLARVDFFLTDDGP-VINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIETT 365 Query: 351 LER 353 L R Sbjct: 366 LAR 368 >gb|AAF71281.1|AF253562_5 (AF253562) ligase [Enterococcus faecalis] Length = 349 Score = 262 bits (670), Expect = 4e-69 Identities = 137/361 (37%), Positives = 216/361 (58%), Gaps = 21/361 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQW-HVSDASNYLL 59 M+ ++ ++FGG S E+EVSLQSA + + I+ ++FD++ +GI + G+W H + +L Sbjct: 1 MQNKKIAVIFGGNSTEYEVSLQSASAVFENINTNKFDIIPIGITRSGEWYHYTGEKEKIL 60 Query: 60 NA---DD-----PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLG 111 N +D P ++ S ++ A + + VD++FP++HG G Sbjct: 61 NNTWFEDSKNLCPVVVSQNRSVKGFLEI----------ASDKYRIIKVDLVFPVLHGKNG 110 Query: 112 EDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISF 171 E+G+LQG+ +A +P VG D L+SA CMDKD +L+ AG+++ +T R N + Sbjct: 111 ENGTLQGIFELAGIPVVGCDTLSSALCMDKDRAHKLVSLAGISVPKSVTFKRFNEE-AAM 169 Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 E+E+ L PLF+KP GSS G++KV +++ A++LAFE D +VIVE+ I G E+ C Sbjct: 170 KEIEANLTYPLFIKPVRAGSSFGITKVIEKQELDAAIELAFEHDTEVIVEETINGFEVGC 229 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 AVLG D EI L+S F+ Y KY + +K+ +PA I E +I+ AV Y+ Sbjct: 230 AVLGIDELIVGRVDEIELSSGFFDYTEKYTLKS-SKIYMPARIDAEAEKRIQEAAVTIYK 288 Query: 292 TLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 LGC+G +RVD+F TP E+V NE+NT+PGFT+ S YP + + GL ++ ++ +LI L + Sbjct: 289 ALGCSGFSRVDMFYTPSGEIVFNEVNTIPGFTSHSRYPNMMKGIGLSFSQMLDKLIGLYV 348 Query: 352 E 352 E Sbjct: 349 E 349 >gb|AAG49141.1|AF215736_1 (AF215736) D-alanine:D-alanine ligase [Enterococcus faecium] Length = 358 Score = 262 bits (669), Expect = 5e-69 Identities = 140/354 (39%), Positives = 220/354 (61%), Gaps = 10/354 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ +++GG+SA HEVS+ SA ++++AI + + V L+ I K+GQW + D Sbjct: 1 MKITLLYGGRSAGHEVSILSAFSVLNAIYYNYYQVQLVFITKEGQWVKGPLLTEKPASKD 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 H++ PS + GK +I+ G+ ++FP++HG GEDG++QG L Sbjct: 61 VLHLSWDPSGQTEEGFTGK----VINP--GEIKEEGAIVFPVLHGPNGEDGTIQGFLETL 114 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN-RHNIS--FAEVESKLGL 180 N+P+VG+ VL SA MDK +TK +L+ AG+ P++ + + + N F + E L Sbjct: 115 NMPYVGAGVLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLY 174 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+FVKPAN GSSVG++K + E+ A+ A+++D + IVEQGI+ REIE AVLGN++ + Sbjct: 175 PMFVKPANMGSSVGITKAENREELQNALATAYQYDSRAIVEQGIEAREIEVAVLGNEDVR 234 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 + GE+V FY Y+ KYI+ + ++ +PA + E+ K + A AY LG +G++R Sbjct: 235 TTLPGEVVKDVAFYDYEAKYIN-NKIEMQIPAEVPEEVYQKAQEYAKLAYTMLGGSGLSR 293 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 D FLT +NE+ +NE+N++PGFT SMYP LW+ GL Y DLI LI+L + R+ Sbjct: 294 CDFFLTNKNELFLNELNSMPGFTEFSMYPLLWENMGLKYGDLIEELIQLGMNRY 347 >ref|NP_440997.1| (NC_000911) D-alanine:D-alanine ligase-related protein [Synechocystis sp. PCC 6803] sp|P73632|DDL_SYNY3 D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||S77119 D-alanine--D-alanine ligase (EC 6.3.2.4) A - Synechocystis sp. (strain PCC 6803) dbj|BAA17677.1| (D90908) D-alanine:D-alanine ligase-related protein [Synechocystis sp. PCC 6803] Length = 354 Score = 258 bits (660), Expect = 5e-68 Identities = 147/368 (39%), Positives = 220/368 (58%), Gaps = 37/368 (10%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAI----DKSRFDVVLLGIDKQGQWHVSDASNYLL 59 +RVG++FGG S EHEVS++SA+ I A+ +++++ V I K G W D S +L Sbjct: 1 MRVGLLFGGCSGEHEVSIKSAQAIAKALASDDNQTKYQVSPFYIQKNGVWLGPDVSQQVL 60 Query: 60 N-----ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDG 114 + D P +A Q P + ++V FPI+HG GEDG Sbjct: 61 DQGVPWGDQPV------TAGQRWQFPPEAAR-------------MEVWFPILHGPNGEDG 101 Query: 115 SLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN--RHNISFA 172 ++QG+ + +P+VGS VL S MDK K + AGL ++ + R + F Sbjct: 102 TVQGLFSLMQVPYVGSGVLGSCVGMDKLAMKMVFERAGLPQVNYMGVERGEIWSNPCVFP 161 Query: 173 ----EVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-R 227 ++E+++G P FVKPAN GSSVG++KV + + A+D A +D ++IVE G+ R Sbjct: 162 ALCEKIEAQVGYPCFVKPANLGSSVGIAKVRNRSELEAALDNAASYDRRIIVEAGLTDIR 221 Query: 228 EIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAV 287 E+ECAVLGN+NPQAS GEI SDFY Y+TKY D +++ +PA + + ++I+ +A+ Sbjct: 222 EVECAVLGNENPQASVVGEITYDSDFYDYETKYTD-GRSQMHIPANLPKAVVNQIQTMAI 280 Query: 288 QAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 QA++ + AG+ R+D F P ++VINEINTLPGFT SMYP+LW+ASG+ + L+ RL Sbjct: 281 QAFKAVDAAGLGRLDFFYQPTTGQIVINEINTLPGFTAFSMYPELWRASGVEFPSLVDRL 340 Query: 347 IELALERH 354 ++LAL+ H Sbjct: 341 LQLALDYH 348 >emb|CAB64487.1| (AJ243059) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 256 bits (653), Expect = 3e-67 Identities = 134/356 (37%), Positives = 213/356 (59%), Gaps = 30/356 (8%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A++ +RF V I + G + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVNYNRFTVKTFFISQSGDF------------- 48 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQ---NGQPLPTV-----DVIFPIVHGTLGEDG 114 +Q PG+ + + +A + Q +P+ V+FP++HG +GEDG Sbjct: 49 --------IKTQEFSQTPGQEDRLMTNATIDWDKQVVPSAIYEEGAVVFPVLHGPMGEDG 100 Query: 115 SLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 S+QG L V +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEV Sbjct: 101 SVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEV 160 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL 234 E KL P+F KP+N GSSVG+SK ++E+ A+ LAF++D +V+VEQG+ REIE +L Sbjct: 161 EEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVGLL 220 Query: 235 GNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 GN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ +G Sbjct: 221 GNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETAFRAIG 279 Query: 295 CAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 G++R D F T + E+ +NE+NT+PGFT SMYP LW G+ Y+DLI L++LA Sbjct: 280 GLGLSRCDFFYTDKGEIFLNELNTMPGFTQWSMYPLLWDNMGISYSDLIEHLVDLA 335 >gb|AAC43218.1| (U00457) D-alanine:D-alanine ligase-related protein [Enterococcus faecalis] prf||2007289B D-Ala D-Ala ligase [Enterococcus faecalis] Length = 348 Score = 254 bits (648), Expect = 1e-66 Identities = 140/353 (39%), Positives = 216/353 (60%), Gaps = 10/353 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 L++ +++GG+S EH+VS+ SA ++++AI + V L+ I K GQW + + Sbjct: 1 LKIILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKE 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 H+ + + GK + ++FP++HG GEDG++QG + Sbjct: 61 VLHLTWAQTPEETGEFSGKR------ISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETI 114 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN-RHNIS--FAEVESKLGL 180 N+P+VG+ VLAS MDK +TK LL+ G+ PF+ + R++ + N F + E L Sbjct: 115 NMPYVGAGVLASVNAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIY 174 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+FVKPAN GSSVG+SKV + E+ A++ AF +D + IVEQGI+ REIE A+LGN++ + Sbjct: 175 PVFVKPANMGSSVGISKVENREELQEALEEAFRYDARAIVEQGIEAREIEVAILGNEDVR 234 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 + GE+V FY YD KYI+ + ++ +PA + E+ + + A +AY L +G++R Sbjct: 235 TTLPGEVVKDVAFYDYDAKYIN-NTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSR 293 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 D FLT +NE+ +NE+NT+PGFT+ SMYP LW+ GL Y+DLI LI+LAL R Sbjct: 294 CDFFLTSKNELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLALNR 346 >sp|Q47758|DDL_ENTFA D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) Length = 348 Score = 253 bits (646), Expect = 2e-66 Identities = 139/353 (39%), Positives = 216/353 (60%), Gaps = 10/353 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ +++GG+S EH+VS+ SA ++++AI + V L+ I K GQW + + Sbjct: 1 MKIILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKE 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 H+ + + GK + ++FP++HG GEDG++QG + Sbjct: 61 VLHLTWAQTPEETGEFSGKR------ISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETI 114 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN-RHNIS--FAEVESKLGL 180 N+P+VG+ VLAS MDK +TK LL+ G+ PF+ + R++ + N F + E L Sbjct: 115 NMPYVGAGVLASVNAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIY 174 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+FVKPAN GSSVG+SKV + E+ A++ AF +D + IVEQGI+ REIE A+LGN++ + Sbjct: 175 PVFVKPANMGSSVGISKVENREELQEALEEAFRYDARAIVEQGIEAREIEVAILGNEDVR 234 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 + GE+V FY YD KYI+ + ++ +PA + E+ + + A +AY L +G++R Sbjct: 235 TTLPGEVVKDVAFYDYDAKYIN-NTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSR 293 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 D FLT +NE+ +NE+NT+PGFT+ SMYP LW+ GL Y+DLI LI+LAL R Sbjct: 294 CDFFLTSKNELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLALNR 346 >sp|Q9ZBR9|DDL_STRCO D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||T35644 D-alanine-D-alanine ligase - Streptomyces coelicolor emb|CAA22403.1| (AL034447) D-alanine-D-alanine ligase [Streptomyces coelicolor A3(2)] Length = 389 Score = 253 bits (645), Expect = 3e-66 Identities = 149/380 (39%), Positives = 224/380 (58%), Gaps = 44/380 (11%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K RV +VFGG+S+EH +S+ +A ++ AID++R+DV+ +GI + G+W L AD Sbjct: 20 KPRVAVVFGGRSSEHGISVVTAGAVLAAIDRTRYDVLPIGITRDGRW--------ALTAD 71 Query: 63 DPAHIAL----RPSATSLAQV----------PGKHEHQLIDAQNG---QPLPTVDVIFPI 105 +P +A+ P LA+ P E ++ ++ G + L VDV+FP+ Sbjct: 72 EPERMAITERRTPDVEELAESTEGGVLLPVDPANRE--VVYSEPGSVPKALGEVDVVFPV 129 Query: 106 VHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITL---- 161 +HG GEDG+LQG+L ++ +P+VG+ VLASA DK+ K + GL + P+ + Sbjct: 130 LHGPYGEDGTLQGLLELSGVPYVGAGVLASAVGQDKEYMKAVFTSYGLKVGPYAVIRPRE 189 Query: 162 -----TRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH 216 + A + + FA + G PLFVKPA GSS+G++KV A++ A D Sbjct: 190 WEQDRSGARKKIVDFA---GEHGWPLFVKPARAGSSIGITKVDDLAGLDEAIEEARRHDP 246 Query: 217 KVIVEQGIKGREIECAVLG-NDNPQASTCGEIVLTSD--FYAYDTKYIDEDGAKVVVPAA 273 K++VE ++GREIEC VL D P+AS EI S+ +Y ++ KYID +VPA Sbjct: 247 KILVEAALRGREIECGVLEFEDGPRASVPAEIPPPSEHAYYDFEAKYIDSTPG--IVPAP 304 Query: 274 IAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQ 333 + E +++ +AV A+ C G+ R D FLT ++E VINEINT+PGFT ISMYP++WQ Sbjct: 305 LTAEETAEVQRLAVAAFDAASCEGLVRADFFLTEDDEFVINEINTMPGFTPISMYPQMWQ 364 Query: 334 ASGLGYTDLITRLIELALER 353 ASG+ Y +L+ RL++ AL R Sbjct: 365 ASGVSYPELVDRLVQAALRR 384 >ref|NP_359108.1| (NC_003098) D-alanine-D-alanine ligase [Streptococcus pneumoniae R6] gb|AAL00319.1| (AE008520) D-alanine-D-alanine ligase [Streptococcus pneumoniae R6] Length = 347 Score = 252 bits (643), Expect = 5e-66 Identities = 133/358 (37%), Positives = 210/358 (58%), Gaps = 30/358 (8%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A+D RF V I + G + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDF------------- 48 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQ---NGQPLPTV-----DVIFPIVHGTLGEDG 114 + PG+ + + + + + P+ V+FP++HG +GEDG Sbjct: 49 --------IKTQEFSHAPGQEDRLMTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDG 100 Query: 115 SLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 S+QG L V +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEV Sbjct: 101 SVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEV 160 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL 234 E KL P+F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +L Sbjct: 161 EEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLL 220 Query: 235 GNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 GN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ +G Sbjct: 221 GNYDVKSTLPGEVVKDVAFYDYDAKYID-NKVTMDIPAKISDDVVAVMRQNAETAFRAIG 279 Query: 295 CAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 G++R D F T + E+ +NE+NT+PGFT SMYP LW+ G+ Y +LI RL++LA E Sbjct: 280 GLGLSRCDFFYTDKGEIFLNELNTMPGFTQWSMYPLLWENMGISYPELIERLVDLAKE 337 >emb|CAB64471.1| (AJ243055) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 251 bits (641), Expect = 8e-66 Identities = 133/358 (37%), Positives = 211/358 (58%), Gaps = 30/358 (8%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A++ RF V I + G + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDF------------- 48 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQ---NGQPLPTV-----DVIFPIVHGTLGEDG 114 +Q PG+ + + +A + + P+ V+FP++HG +GEDG Sbjct: 49 --------IKTQEFSQTPGQEDRLMTNATIDWDKKVAPSAIYEEEAVVFPVLHGPMGEDG 100 Query: 115 SLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 S+QG L V +P+VG ++L+S+ MDK TKR+L G+ P++ + + AEV Sbjct: 101 SVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLESTGIAQVPYVAIVEGDDVTAKIAEV 160 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL 234 E KL P+F KP+N GSSVG+SK ++E+ A+ LAF++D +V+VEQG+ REIE +L Sbjct: 161 EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVGLL 220 Query: 235 GNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 GN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ +G Sbjct: 221 GNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETAFRAIG 279 Query: 295 CAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 G++R D F T + E+ +NE+NT+PGFT SMYP LW G+ Y +LI RL++LA E Sbjct: 280 GLGLSRCDFFYTDKGEIFLNELNTMPGFTQWSMYPLLWDNMGISYPELIERLVDLAKE 337 >emb|CAB64475.1| (AJ243056) D-ala,D-ala ligase [Streptococcus pneumoniae] emb|CAB64479.1| (AJ243057) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 250 bits (639), Expect = 1e-65 Identities = 133/358 (37%), Positives = 209/358 (58%), Gaps = 30/358 (8%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A+D RF V I + G + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDF------------- 48 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQ---NGQPLPTV-----DVIFPIVHGTLGEDG 114 + PG+ + + + + + P+ V+FP++HG +GEDG Sbjct: 49 --------IKTQEFSHAPGQEDRLMTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDG 100 Query: 115 SLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 S+QG L V +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEV Sbjct: 101 SVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEV 160 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL 234 E KL P+F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +L Sbjct: 161 EEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLL 220 Query: 235 GNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 GN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ +G Sbjct: 221 GNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETAFRAIG 279 Query: 295 CAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 G++R D F T + E+ +NE+NT+PGFT SMYP LW G+ Y +LI RL++LA E Sbjct: 280 GLGLSRCDFFYTDKGEIFLNELNTMPGFTQWSMYPLLWDNMGISYPELIERLVDLAKE 337 >ref|NP_346110.1| (NC_003028) D-alanine--D-alanine ligase [Streptococcus pneumoniae TIGR4] gb|AAK75750.1| (AE007460) D-alanine--D-alanine ligase [Streptococcus pneumoniae TIGR4] Length = 347 Score = 250 bits (638), Expect = 2e-65 Identities = 133/358 (37%), Positives = 208/358 (57%), Gaps = 30/358 (8%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A+D RF V I + G + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDF------------- 48 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQ---NGQPLPTV-----DVIFPIVHGTLGEDG 114 + PG+ + + + + + P+ V+FP++HG +GEDG Sbjct: 49 --------IKTQEFSHAPGQEDRLMTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDG 100 Query: 115 SLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 S+QG L V +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEV Sbjct: 101 SVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEV 160 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL 234 E KL P+F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +L Sbjct: 161 EEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLL 220 Query: 235 GNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 GN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ +G Sbjct: 221 GNYDVKSTLPGEVVKDVAFYDYDAKYIDNN-ITMDIPAKISDDVVAVMRQNAETAFRAIG 279 Query: 295 CAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 G++R D F T + E+ +NE+NT+PGFT SMYP LW G+ Y LI RL++LA E Sbjct: 280 GLGLSRCDFFYTDKGEIFLNELNTMPGFTQWSMYPLLWDNMGISYPKLIERLVDLAKE 337 >emb|CAB64483.1| (AJ243058) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 249 bits (636), Expect = 3e-65 Identities = 133/358 (37%), Positives = 211/358 (58%), Gaps = 30/358 (8%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A++ RF V I + G + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDF------------- 48 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQ---NGQPLPTV-----DVIFPIVHGTLGEDG 114 +Q PG+ + + +A + Q P+ V+FP++HG +GEDG Sbjct: 49 --------IKTQEFSQTPGQEDRLMTNATIDWDKQVAPSAIYEEGAVVFPVLHGPMGEDG 100 Query: 115 SLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 S+QG L V +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEV Sbjct: 101 SVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDLTAKIAEV 160 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL 234 E KL P+F KP+N GSSVG+SK ++E+ A+ LAF++D +V+VEQG+ REIE +L Sbjct: 161 EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVGLL 220 Query: 235 GNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 GN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ +G Sbjct: 221 GNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVPIMRQNAKTAFRAIG 279 Query: 295 CAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 G++R + F T + E+ +N++NT+PGFT SMYP LW + Y DLI RL++LA E Sbjct: 280 GLGLSRCNFFYTDKGEISLNKLNTMPGFTQWSMYPLLWDNMRISYPDLIERLVDLAKE 337 >emb|CAB64463.1| (AJ243053) D-ala,D-ala ligase [Streptococcus pneumoniae] emb|CAB64467.1| (AJ243054) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 249 bits (636), Expect = 3e-65 Identities = 132/358 (36%), Positives = 209/358 (57%), Gaps = 30/358 (8%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A++ RF V I + G Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGD-------------- 47 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQ---NGQPLPTV-----DVIFPIVHGTLGEDG 114 + PG+ + + + + + P+ V+FP++HG +GEDG Sbjct: 48 -------SIKTQEFSHAPGQEDRLMTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDG 100 Query: 115 SLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 S+QG L V +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEV Sbjct: 101 SVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEV 160 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL 234 E KL P+F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +L Sbjct: 161 EEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLL 220 Query: 235 GNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 GN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ +G Sbjct: 221 GNYDVKSTLPGEVVKDVAFYDYDAKYID-NKVTMDIPAKISDDVVAVMRQNAETAFRAIG 279 Query: 295 CAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 G++R D F T + E+ +NE+NT+PGFT SMYP LW+ G+ Y +LI RL++LA E Sbjct: 280 GLGLSRCDFFYTDKGEIFLNELNTMPGFTQWSMYPLLWENMGISYPELIERLVDLAKE 337 >sp|O54631|DDL_STRPN D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAC95435.1| (AF068901) D-Ala-D-Ala ligase [Streptococcus pneumoniae] Length = 347 Score = 249 bits (635), Expect = 4e-65 Identities = 132/358 (36%), Positives = 209/358 (57%), Gaps = 30/358 (8%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A++ RF V I + G + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDF------------- 48 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQ---NGQPLPTV-----DVIFPIVHGTLGEDG 114 + PG+ + + + + + P+ V+FP++HG +GEDG Sbjct: 49 --------IKTQEFSHAPGQEDRLMTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDG 100 Query: 115 SLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 S+QG L V +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEV Sbjct: 101 SVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEV 160 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL 234 E KL P+F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +L Sbjct: 161 EEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLL 220 Query: 235 GNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 GN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ +G Sbjct: 221 GNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETAFRAIG 279 Query: 295 CAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 G++R D F T + E+ +NE+NT+PGFT SMYP LW G+ Y +LI RL++LA E Sbjct: 280 GLGLSRCDFFYTDKGEIFLNELNTMPGFTQWSMYPLLWDNMGISYPELIERLVDLAKE 337 >emb|CAB63849.1| (AJ243051) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 249 bits (635), Expect = 4e-65 Identities = 131/358 (36%), Positives = 209/358 (57%), Gaps = 30/358 (8%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A+D RF V I + G + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDF------------- 48 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQ---NGQPLPTV-----DVIFPIVHGTLGEDG 114 + PG+ + + + + + P+ V+FP++HG +GEDG Sbjct: 49 --------IKTQEFSHAPGQEDRLMTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDG 100 Query: 115 SLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 S+QG L V +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEV Sbjct: 101 SVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEV 160 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL 234 E KL P+F KP+N G SVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +L Sbjct: 161 EEKLAYPVFTKPSNMGCSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLL 220 Query: 235 GNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 GN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ +G Sbjct: 221 GNYDVKSTLPGEVVKDVAFYDYDAKYID-NKVTMDIPAKISDDVVAVMRQNAETAFRAIG 279 Query: 295 CAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 G++R + F T + E+ +NE+NT+PGFT SMYP LW+ G+ Y +LI RL++LA E Sbjct: 280 GLGLSRCNFFYTDKGEIFLNELNTMPGFTQWSMYPLLWENMGISYPELIERLVDLAKE 337 >emb|CAB64459.1| (AJ243052) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 248 bits (633), Expect = 6e-65 Identities = 132/358 (36%), Positives = 208/358 (57%), Gaps = 30/358 (8%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A++ RF V I + G Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGD-------------- 47 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQ---NGQPLPTV-----DVIFPIVHGTLGEDG 114 + PG+ + + + + + P+ V+FP++HG +GEDG Sbjct: 48 -------SIKTQEFSHAPGQEDRLMTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDG 100 Query: 115 SLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 S+QG L V +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEV Sbjct: 101 SVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEV 160 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL 234 E KL P+F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +L Sbjct: 161 EEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLL 220 Query: 235 GNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 GN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ +G Sbjct: 221 GNYDVKSTLPGEVVKDVAFYDYDAKYID-NKVTMDIPAKISDDVVAVMRQNAETAFRAIG 279 Query: 295 CAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 G++R D F T + E+ +NE+NT+PGFT SMYP LW G+ Y +LI RL++LA E Sbjct: 280 GLGLSRCDFFYTDKGEIFLNELNTMPGFTQWSMYPLLWDNMGISYPELIERLVDLAKE 337 >gb|AAD41882.1|AF153050_3 (AF153050) D-alanine:D-lactate ligase [Enterococcus faecium] Length = 343 Score = 247 bits (631), Expect = 1e-64 Identities = 132/360 (36%), Positives = 210/360 (57%), Gaps = 24/360 (6%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDAS--NYL 58 M K++V ++FGG S EH VS++SA I ID ++ +GI K G W + + + Sbjct: 1 MFKIKVAVLFGGCSEEHNVSIKSAMEIAANIDTKKYQPYYIGITKSGVWKMCEKPCLGWE 60 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQ-LIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ 117 A DP + P + H LI G + VDV+FP++HG GEDGS+Q Sbjct: 61 QYAGDPVVFS-----------PDRSTHGLLIQKDTGYEIQPVDVVFPMIHGKFGEDGSIQ 109 Query: 118 GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK 177 G+L ++ +P+VG D+ +S CMDK + ++++AG+ + F L +R E E Sbjct: 110 GLLELSGIPYVGCDIQSSVICMDKALAYTVVKNAGIAVPGFRILQEGDR-----LETED- 163 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 L P+FVKPA GSS GV+KV E+ A+ A ++D K+++E+ + G E+ CA+LGN+ Sbjct: 164 LVYPVFVKPARSGSSFGVNKVCKAEELQAAIREARKYDSKILIEEAVTGSEVGCAILGNE 223 Query: 238 NP-QASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTL 293 N A +I L F+ + E G++ + VPAA+ E+ ++IR A++ Y+ L Sbjct: 224 NDLMAGEVDQIELRHGFFKIHQEAQPEKGSENAVIRVPAALPDEVRERIRKTAMKIYRIL 283 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 GC G+AR+D+FL + +V+NE+NT+PGFT+ S YP++ A+G ++++ RLIE +L R Sbjct: 284 GCRGLARIDLFLREDGCIVLNEVNTMPGFTSYSRYPRMMTAAGFTLSEILDRLIEFSLRR 343 >gb|AAD42184.1|AF130997_5 (AF130997) D-alanine:D-lactate ligase [Enterococcus faecium] Length = 343 Score = 244 bits (624), Expect = 8e-64 Identities = 130/360 (36%), Positives = 211/360 (58%), Gaps = 24/360 (6%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDAS--NYL 58 M +++V ++FGG S EH VS++SA I ID ++ +GI K G W + + + Sbjct: 1 MFRIKVAVLFGGCSEEHNVSIKSAMEIAANIDTKKYQPYYIGITKSGVWKMCEKPCLEWE 60 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQ-LIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ 117 A DP + P + H LI G + VDV+FP++HG GEDGS+Q Sbjct: 61 QYAGDPVVFS-----------PDRSTHGLLIQKDKGYEIQPVDVVFPMIHGKFGEDGSIQ 109 Query: 118 GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK 177 G+L ++ +P+VG D+ +S CMDK + ++++AG+ + F L +R E E Sbjct: 110 GLLELSGIPYVGCDIQSSVICMDKALAYTVVKNAGITVPGFRILQEGDR-----LETEDF 164 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 + P+FVKPA GSS GV+KV E+ A++ A ++D K+++E+ + G E+ CA+LGN Sbjct: 165 V-YPVFVKPARSGSSFGVNKVCKAEELQAAIEEARKYDSKILIEEAVTGSEVGCAILGNG 223 Query: 238 NP-QASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTL 293 N A +I L F+ + E G++ + VPAA+ E+ ++I+ A++ Y+ L Sbjct: 224 NDLMAGEVDQIELRHGFFKIHQEAQPEKGSENAVIRVPAALPDEVREQIQETAMKIYRIL 283 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 GC G+AR+D+FL + +V+NE+NT+PGFT+ S YP++ A+G ++++ RLIEL+L R Sbjct: 284 GCRGLARIDLFLREDGCIVLNEVNTMPGFTSYSRYPRMMTAAGFTLSEILDRLIELSLRR 343 >gb|AAG37026.1|AF277571_3 (AF277571) D-alanine:D-lactate ligase [Enterococcus faecium] Length = 343 Score = 242 bits (618), Expect = 3e-63 Identities = 131/361 (36%), Positives = 214/361 (58%), Gaps = 26/361 (7%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M KL++ ++FGG S EH+VS++SA + I+K ++ +GI K G W + D Sbjct: 1 MYKLKIAVLFGGCSEEHDVSVKSAMEVAANINKEKYQPFYIGITKSGAWKLCDKP----- 55 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNG----QPLPTVDVIFPIVHGTLGEDGSL 116 D + A P+ S P + H L+ ++G QP VDV+ P++HG GEDG++ Sbjct: 56 CRDWENYAGYPAVIS----PDRRIHGLLIQKDGGYESQP---VDVVLPMIHGKFGEDGTI 108 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 QG+L ++ +P+VG D+ +S CMDK + ++++AG+ + F L + + E E+ Sbjct: 109 QGLLELSGIPYVGCDIQSSVICMDKSLAYMVVKNAGIEVPGFRVLQKGDS-----LEAET 163 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN 236 L P+FVKPA GSS GV+KV E+ AV A ++D K++VE+ + G E+ CA+LGN Sbjct: 164 -LSYPVFVKPARSGSSFGVNKVCRAEELQAAVTEAGKYDSKILVEEAVSGSEVGCAILGN 222 Query: 237 DNPQAS-TCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQT 292 N + +I L F+ + E G++ + VPAA+ E+ ++I+ A + Y+ Sbjct: 223 GNDLITGEVDQIELKHGFFKIHQEAQPEKGSENAVIRVPAALPDEVREQIQETAKKIYRV 282 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 LGC G+AR+D+FL + +V+NE+NT+PGFT+ S YP++ A+G ++++ RLI L+L Sbjct: 283 LGCRGLARIDLFLREDGSIVLNEVNTMPGFTSYSRYPRMMTAAGFTLSEILDRLIGLSLR 342 Query: 353 R 353 R Sbjct: 343 R 343 >pir||T35363 D-alanine--D-alanine ligase (EC 6.3.2.4) A SC66T3.06 [similarity] - Streptomyces coelicolor emb|CAB45462.1| (AL079348) putative D-alanine:D-lactate ligase [Streptomyces coelicolor A3(2)] Length = 346 Score = 239 bits (611), Expect = 3e-62 Identities = 139/356 (39%), Positives = 203/356 (56%), Gaps = 20/356 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +L+VGIVFGG S EH VS++SA+ + +D ++ +GI K G W + D Sbjct: 1 MARLKVGIVFGGSSEEHAVSVKSAQEVARNLDTEKYQPFFVGITKDGAWRLCDGP----- 55 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPT-VDVIFPIVHGTLGEDGSLQGM 119 D + RP S P + H L+ + GQ +DV+ P++HGTLGEDG+ QG+ Sbjct: 56 GQDWENGDCRPVVLS----PDRSVHGLLVLEQGQYRSVRLDVVLPVLHGTLGEDGATQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L ++ +P+VG DV +SA CMDK + + R AG+ F T+T + +L Sbjct: 112 LELSGIPYVGCDVQSSALCMDKSLAYVVARSAGIATPDFWTVTGDETID------PGRLT 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GVSKV E A AV+ A +D KV++E + G E+ CA+LGND + Sbjct: 166 YPVFVKPARSGSSFGVSKVCRPEDLATAVESARRYDTKVLIEAAVVGSEVGCAILGNDPD 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 I L+ F+ + E+G++ VVPA I E ++ A Y+ LGC Sbjct: 226 LIVGEVDRIALSHGFFRIHQEEQPENGSENSTPVVPADIPTEKRSLVQETAKAVYRALGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 G++RVD+FL + EVV+NE+NTLPG T+ S YP++ A+GL +++I R + LAL Sbjct: 286 RGLSRVDMFLKEDGEVVLNEVNTLPGMTSYSRYPRMMAAAGLPLSEVIDRTLSLAL 341 >gb|AAD51060.1|AF175293_5 (AF175293) D-alanine:D-lactate ligase [Enterococcus faecium] Length = 343 Score = 239 bits (611), Expect = 3e-62 Identities = 130/360 (36%), Positives = 209/360 (57%), Gaps = 24/360 (6%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDAS--NYL 58 M +++V ++FGG S EH VS++SA I ID ++ +GI K G W + + + Sbjct: 1 MFRIKVAVLFGGCSEEHNVSIKSAMEIAANIDTKKYQPYYIGITKSGVWKMCEKPCLEWE 60 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQ-LIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ 117 A DP + P + H LI G + VDV P++HG GEDGS+Q Sbjct: 61 QYAGDPVVFS-----------PDRSTHGLLIQKDTGYEIQPVDVGLPMIHGKFGEDGSIQ 109 Query: 118 GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK 177 G+L ++ +P+VG D+ +S CMDK + ++++AG+ + F L +R E E Sbjct: 110 GLLELSGIPYVGCDIQSSVTCMDKALAYTVVKNAGIAVPGFRILQEGDR-----LETEDF 164 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 + P+FVKPA GSS GV+KV E+ A++ A ++D K+++E+ + G E+ CA+LGN Sbjct: 165 V-YPVFVKPARSGSSFGVNKVCKAEELQAAIEDARKYDSKILIEEAVTGSEVGCAILGNG 223 Query: 238 NP-QASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTL 293 N A +I L F+ + E G++ + VPAA+ E+ ++I+ A++ Y+ L Sbjct: 224 NDLMAGEVDQIELRHGFFKIHQEAQPEKGSENAVIRVPAALPDEVIERIQKTAMKIYRIL 283 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 GC G+AR+D+FL + +V+NE+NT+PGFT+ S YP++ A+G T+++ RLIEL+L R Sbjct: 284 GCRGLARIDLFLREDGCIVLNEVNTMPGFTSYSRYPRMMTAAGFTLTEILDRLIELSLRR 343 >ref|NP_269512.1| (NC_002737) putative D-ala,D-ala ligase [Streptococcus pyogenes] [Streptococcus pyogenes M1 GAS] gb|AAK34233.1| (AE006579) putative D-ala,D-ala ligase [Streptococcus pyogenes M1 GAS] Length = 348 Score = 239 bits (610), Expect = 3e-62 Identities = 128/360 (35%), Positives = 204/360 (56%), Gaps = 30/360 (8%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K + +++GG+SAE EVS+ SA++++ A++ +F V I + GQ+ Sbjct: 1 MSKQTLVLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQMGQF----------- 49 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLID-----AQNGQPLPTVD---VIFPIVHGTLGE 112 ++ P + E + + Q +P + V+FP++HG +GE Sbjct: 50 ----------IKTQQFSEKPSESERLMTNETIELTQKIKPSDIYEEGAVVFPVLHGPMGE 99 Query: 113 DGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFA 172 DGS+QG L V +P++G++V++S+ MDK TKR+L G+ + Sbjct: 100 DGSIQGFLEVLRMPYIGTNVMSSSIAMDKITTKRVLESIGIPQVAYTVYIDGQDLEACLV 159 Query: 173 EVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECA 232 E ++L P+FVKPAN GSSVG+SK ++ + A+ LA +D +V++EQG+ REIE Sbjct: 160 ETLARLTFPIFVKPANMGSSVGISKAQTKVELRKAIQLALTYDSRVLIEQGVVAREIEVG 219 Query: 233 VLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 +LGND +++ GE++ DFY Y KY+D + + +PA + I ++R+ A A++ Sbjct: 220 LLGNDKVKSTLPGEVIKDVDFYDYQAKYVD-NKITMAIPADVDQSIVTEMRSYAEVAFKA 278 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 LG G++R D FLT + +V +NE+NT+PGFT SMYP LW+ GL Y DLI L+ LA E Sbjct: 279 LGGCGLSRCDFFLTQDGQVYLNELNTMPGFTQWSMYPLLWENMGLAYPDLIEELVTLAQE 338 >ref|NP_266497.1| (NC_002662) D-alanine-D-alanine ligase (EC 6.3.2.4) [Lactococcus lactis subsp. lactis] sp|Q9CIL5|DDL_LACLA D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAK04439.1|AE006271_2 (AE006271) D-alanine-D-alanine ligase (EC 6.3.2.4) [Lactococcus lactis subsp. lactis] Length = 349 Score = 237 bits (605), Expect = 1e-61 Identities = 132/362 (36%), Positives = 212/362 (58%), Gaps = 33/362 (9%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K + +++GG+SAE EVS+ SA++++ A++ SRF V I K G++ + Sbjct: 1 MSKETLILLYGGRSAEREVSVLSAESVMRAVNYSRFVVKTYFITKGGEFIKTQEF----- 55 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVD---------VIFPIVHGTLG 111 D PA E +L+ + P + V+FP++HG +G Sbjct: 56 TDKPA-----------------EEEKLLTNDLAESYPKISPAAIYEKAAVVFPVLHGPMG 98 Query: 112 EDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISF 171 EDGS+QG L + L +VG ++L++++ MDK + K + G+ P++ Sbjct: 99 EDGSIQGFLEILRLAYVGPNILSASSTMDKLLAKHVFEAVGVPQVPYVAAFADENQGEIA 158 Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 EV KL P+FVKPAN GSSVG+SKV A+ A+++D++V++EQG+ REIEC Sbjct: 159 QEVVEKLEFPVFVKPANMGSSVGISKVDDLADLQPALSEAYKYDNRVVIEQGVDAREIEC 218 Query: 232 AVLGNDNPQASTC-GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 AVLGN++ ++T GE+V +FY Y++KYID + ++ +PA + ++ K++ A++AY Sbjct: 219 AVLGNNSDVSATLPGEVVKDVEFYDYNSKYID-NKIQMDIPAKVPADLAQKMQEYAIKAY 277 Query: 291 QTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + + G++R D F+T + V +NEIN +PGFT SMYP LW+ GL Y+DLI +L++LA Sbjct: 278 KAVNGTGLSRCDFFVTKDGNVYLNEINAIPGFTQWSMYPLLWENMGLSYSDLIEKLVDLA 337 Query: 351 LE 352 E Sbjct: 338 KE 339 >pdb|1EHI|A Chain A, D-Alanine:d-Lactate Ligase (Lmddl2) Of Vancomycin-Resistant Leuconostoc Mesenteroides pdb|1EHI|B Chain B, D-Alanine:d-Lactate Ligase (Lmddl2) Of Vancomycin-Resistant Leuconostoc Mesenteroides Length = 377 Score = 236 bits (603), Expect = 2e-61 Identities = 129/367 (35%), Positives = 215/367 (58%), Gaps = 13/367 (3%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKS-RFDVVLLGIDKQGQWHVSDASNYLL 59 M K RV ++FGG S+EH+VS +SA+N +AI+ + ++++++ I + G + +++S +L Sbjct: 1 MTKKRVALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKIL 60 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 +D I T A P H L A + D+ FP+VHG LGEDG+LQG+ Sbjct: 61 ALEDEQPIVDAFMKTVDASDPLARIHALKSAGD------FDIFFPVVHGNLGEDGTLQGL 114 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ + P+VG+ + A DK +TK LL G+ +I + + +N S+ ++ ++LG Sbjct: 115 FKLLDKPYVGAPLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELG 174 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGNDN 238 +FVK ANQGSSVG+S+VT+ E+Y A+ +F++D+KV++E+ + G RE+E V+GND Sbjct: 175 NIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVNGARELEVGVIGNDQ 234 Query: 239 PQASTCGEIVLTSD-----FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 P S G + + +Y Y+ K++D +PA ++PE+ +++ +A+ AY+ L Sbjct: 235 PLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQLSPEVTKEVKQMALDAYKVL 294 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G AR+D L N + E NTLPGFTN+S++ +LW S + L+ LI+ E Sbjct: 295 NLRGEARMDFLLDENNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLIDYGFED 354 Query: 354 HAADNAL 360 A + L Sbjct: 355 FAQNKKL 361 >gb|AAB18338.1| (U75444) D-Ala-D-Ala ligase2 [Leuconostoc mesenteroides] Length = 377 Score = 236 bits (603), Expect = 2e-61 Identities = 129/367 (35%), Positives = 215/367 (58%), Gaps = 13/367 (3%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKS-RFDVVLLGIDKQGQWHVSDASNYLL 59 M K RV ++FGG S+EH+VS +SA+N +AI+ + ++++++ I + G + +++S +L Sbjct: 1 MTKKRVALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKIL 60 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 +D I T A P H L A + D+ FP+VHG LGEDG+LQG+ Sbjct: 61 ALEDEQPIVDAFMKTVDASDPLARIHALKSAGD------FDIFFPVVHGNLGEDGTLQGL 114 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ + P+VG+ + A DK +TK LL G+ +I + + +N S+ ++ ++LG Sbjct: 115 FKLLDKPYVGAPLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELG 174 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGNDN 238 +FVK ANQGSSVG+S+VT+ E+Y A+ +F++D+KV++E+ + G RE+E V+GND Sbjct: 175 NIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVNGARELEVGVIGNDQ 234 Query: 239 PQASTCGEIVLTSD-----FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 P S G + + +Y Y+ K++D +PA ++PE+ +++ +A+ AY+ L Sbjct: 235 PLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFEIPAQLSPEVTKEVKQMALDAYKVL 294 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G AR+D L N + E NTLPGFTN+S++ +LW S + L+ LI+ E Sbjct: 295 NLRGEARMDFLLDENNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLIDYGFED 354 Query: 354 HAADNAL 360 A + L Sbjct: 355 FAQNKKL 361 >ref|NP_219107.1| (NC_000919) D-alanine--D-alanine ligase (ddlA) [Treponema pallidum] sp|O83676|DDL_TREPA D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||A71296 D-alanine--D-alanine ligase (EC 6.3.2.4) A ddlA - syphilis spirochete gb|AAC26568.1| (AE001241) D-alanine--D-alanine ligase (ddlA) [Treponema pallidum] Length = 396 Score = 236 bits (603), Expect = 2e-61 Identities = 133/357 (37%), Positives = 210/357 (58%), Gaps = 25/357 (7%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDAS-------- 55 + V +++GG+SAEH+VS++SA+ + + + V+L+GI ++G W+ A Sbjct: 2 VHVTLLYGGRSAEHDVSVRSARFVARTL-CLQHTVMLIGITRRGVWYAQPACALEQLCTG 60 Query: 56 --NYLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGED 113 + D+ + L P + G P T DV+FP++HG+ GED Sbjct: 61 TVALSIQEDEKRRVCLVPGGGTAGAF----------VIAGMPCVT-DVVFPVLHGSYGED 109 Query: 114 GSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR-ANRHNIS-- 170 G++QG+L + +P+VG V ASA MDK K L + AGL + PF+ + A R ++ Sbjct: 110 GTVQGLLEMLQVPYVGCGVCASALAMDKVKAKMLWQAAGLPVLPFVFFRKDAWRMHMQEF 169 Query: 171 FAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIE 230 A++E++LG PLFVKPA GSSVG S V + A++ AF++D V+VE+ ++ REIE Sbjct: 170 VAQLETRLGYPLFVKPAQAGSSVGASAVQTRAPLIPAIEAAFQWDEVVLVERYVRAREIE 229 Query: 231 CAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 CA+ GN GE++ FY Y+ KY D A+V+V A + ++I +A++AY Sbjct: 230 CALSGNGPYTVHGAGEVIAQGAFYDYEEKYADASVARVLVTAPLETAQYEQITTLALRAY 289 Query: 291 QTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 + LG G+ARVD FL EV +NE+NT+PGFT+IS++P++ QA+G+ DL+ +L+ Sbjct: 290 EALGLTGLARVDFFLLETGEVYVNEVNTMPGFTSISLFPQICQAAGVAPQDLMAQLL 346 >sp|Q48745|DDL_LEUME D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAA87679.1| (U08909) putative D-alanine:D-alanine ligase [Leuconostoc mesenteroides] Length = 377 Score = 235 bits (599), Expect = 6e-61 Identities = 128/367 (34%), Positives = 214/367 (57%), Gaps = 13/367 (3%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKS-RFDVVLLGIDKQGQWHVSDASNYLL 59 M K RV ++FGG S+EH+VS +SA+N +AI+ + ++++++ I + G + +++S +L Sbjct: 1 MTKKRVALIFGGNSSEHDVSKRSAQNFYNAIEATDKYEIIVFAIAQNGFFLDTESSKKIL 60 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 +D I T P H L A + D+ FP+VHG LGEDG+LQG+ Sbjct: 61 ALEDEQPIVDAFMKTVDTSDPLARIHALKSAGD------FDIFFPVVHGNLGEDGTLQGL 114 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ + P+VG+ + A DK +TK LL G+ +I + + +N S+ ++ ++LG Sbjct: 115 FKLLDKPYVGAPLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELG 174 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGNDN 238 +FVK ANQGSSVG+S+VT+ E+Y A+ +F++D+KV++E+ + G RE+E V+GND Sbjct: 175 NIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVNGARELEVGVIGNDQ 234 Query: 239 PQASTCGEIVLTSD-----FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 P S G + + +Y Y+ K++D +PA ++PE+ +++ +A+ AY+ L Sbjct: 235 PLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFEIPAQLSPEVTKEVKQMALDAYKVL 294 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G AR+D L N + E NTLPGFTN+S++ +LW S + L+ LI+ E Sbjct: 295 NLRGEARMDFLLDENNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLIDYGFED 354 Query: 354 HAADNAL 360 A + L Sbjct: 355 FAQNKKL 361 >sp|Q06893|VANB_ENTFC VANCOMYCIN B-TYPE RESISTANCE PROTEIN VANB (VANB LIGASE) (D-ALANINE--D-LACTATE LIGASE) gb|AAC43217.1| (U00456) D-alanine:D-alanine ligase-related protein induced by vancomycin [Enterococcus faecalis] gb|AAB05627.1| (U35369) D-Ala:D-Lac ligase [Enterococcus faecalis] prf||2007289A D-Ala lactate ligase [Enterococcus faecalis] Length = 342 Score = 234 bits (596), Expect = 1e-60 Identities = 133/359 (37%), Positives = 206/359 (57%), Gaps = 23/359 (6%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K++V I+FGG S EH+VS++SA I I+ +FD +GI K G W + Sbjct: 1 MNKIKVAIIFGGCSEEHDVSVKSAIEIAANINTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADD-PAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQG 118 AD PA + P + H L+ + + +DV FP++HG GEDG++QG Sbjct: 61 ADSLPAIFS-----------PDRKTHGLLVMKEREYETRRIDVAFPVLHGKCGEDGAIQG 109 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 + ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 110 LFELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIEKGDKPE------ARTL 163 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN-D 237 P+FVKPA GSS GV+KV S E+ A++ A ++D K+++EQ I G E+ CAV+GN D Sbjct: 164 TYPVFVKPARSGSSFGVTKVNSTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNED 223 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDG---AKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 + +I L+ + + E G A ++VPA I E ++++ A + Y+ LG Sbjct: 224 DLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMIIVPADIPVEERNRVQETAKKVYRVLG 283 Query: 295 CAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 C G+ARVD+FL + +V+NE+NTLPGFT+ S YP++ A+G+ LI LI LA+ER Sbjct: 284 CRGLARVDLFLQEDGGIVLNEVNTLPGFTSYSRYPRMAAAAGITLPALIDSLITLAIER 342 >emb|CAB61227.1| (Y15704) vana protein [Bacillus circulans] Length = 343 Score = 232 bits (591), Expect = 4e-60 Identities = 132/359 (36%), Positives = 203/359 (55%), Gaps = 24/359 (6%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I IDK +++ + +GI K G W + + Sbjct: 1 MNRIKVAILFGGCSEEHDVSVKSAIEIAANIDKEKYETLYIGITKSGVWKMCEKPCVEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGM 119 D+ L P K H L+ +N + + VDV F ++HG GEDGS+QG+ Sbjct: 61 NDNCCSAVLSPD---------KKMHGLLVKKNHEYEIDHVDVAFSVLHGKSGEDGSIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +PFVG D+ +SA CMDK +T + +AG+ F + ++ + Sbjct: 112 FELSGIPFVGCDIQSSAICMDKSLTYIVAENAGIATPEFWVFNKDDK------PMADTFT 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+FVKPA GSS GV KV ++ A++LA ++D K+++EQ + G E+ CAVLGN + Sbjct: 166 YPVFVKPARSGSSFGVKKVNGADELDAAIELAGQYDSKILIEQAVLGCEVGCAVLGNSS- 224 Query: 240 QASTCGE---IVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTL 293 A GE I L + + E G++ + VPA ++ E +I+ A + Y L Sbjct: 225 -AFVVGEVDQIRLQHGIFRIHQEAEPEKGSENAVITVPADLSAEERGRIQETAKKIYNAL 283 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 GC G+ARVD+FL +V+NE+NTLPGFT+ S YP++ A G+ + +LI RLI LAL+ Sbjct: 284 GCRGLARVDMFLQDNGRIVLNEVNTLPGFTSYSRYPRMMAAVGIAFPELIDRLIVLALK 342 >gb|AAF36803.1|AF155139_2 (AF155139) putative D-alanyl-D-alanine ligase VanE [Paenibacillus popilliae] Length = 343 Score = 231 bits (589), Expect = 7e-60 Identities = 127/357 (35%), Positives = 205/357 (56%), Gaps = 20/357 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +L++ I+FGG S EH+VS++SAK I + ID +++ + +GI + G W + Sbjct: 1 MNRLKIAILFGGCSEEHDVSVKSAKEIANNIDTEKYEPIYIGITRSGVWKM--------- 51 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQN-GQPLPTVDVIFPIVHGTLGEDGSLQGM 119 + P + S P K H L+ +N G + +D +F ++HG GEDG++QG+ Sbjct: 52 CEKPCMDWDNENCRSAVLSPDKKMHGLLVMRNKGYQIQRIDAVFSVLHGKSGEDGAIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++++P+VG DV +SA CMDK +T + ++AG F+ L + + + L Sbjct: 112 FELSSIPYVGCDVQSSAVCMDKSLTYIVAQNAGFGTPEFLILNHGDIPD------SNTLT 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+FVKPA GSS GV+KV +E++ A++ A ++D KV++EQ + G E+ CAVLGN Sbjct: 166 YPVFVKPARSGSSFGVNKVNNEDELDAAIETARQYDSKVLIEQAVPGLEVGCAVLGNGTD 225 Query: 240 Q-ASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L+ + + E G++ V+VPA ++ E KI+ A Y+ LGC Sbjct: 226 LIVGEVDQISLSHGIFRIHQEDQPEKGSENAVVLVPANLSAEKRIKIQETAKAIYKALGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 G++RVD+FL +++NE+NTLPGFT S YP++ A+G+ + LI I LAL+ Sbjct: 286 KGLSRVDMFLQENGRIILNEVNTLPGFTAYSRYPRMMAAAGMTLSGLIDHCITLALK 342 >emb|CAB05883.1| (Z83305) D-alanine:D-alanine ligase-related protein [Enterococcus faecium] gb|AAB39760.1| (U81452) D-alanine:D-alanine ligase-related protein [Enterococcus faecium] gb|AAG34691.1|AF310956_6 (AF310956) D-alanine:D-lactate ligase [Enterococcus faecium] Length = 342 Score = 231 bits (589), Expect = 9e-60 Identities = 131/359 (36%), Positives = 205/359 (56%), Gaps = 23/359 (6%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I ID +FD +GI K G W + Sbjct: 1 MNRIKVAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADD-PAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQG 118 AD PA ++ P + H L+ + + +DV FP++HG GEDG++QG Sbjct: 61 ADSLPAILS-----------PDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQG 109 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 + ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 110 LFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPE------AGAL 163 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN-D 237 P+FVKPA GSS G++KV E+ A++ A ++D K+++EQ I G E+ CAV+GN D Sbjct: 164 TYPVFVKPARSGSSFGLTKVNGTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNED 223 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDG---AKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 + +I L+ + + E G A + VPA I E ++++ A + Y+ LG Sbjct: 224 DLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLG 283 Query: 295 CAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 C G+ARVD+FL + +V+NE+NTLPGFT+ S YP++ A+G+ LI LI LAL+R Sbjct: 284 CRGLARVDLFLQEDGGIVLNEVNTLPGFTSYSRYPRMMAAAGITLPALIDSLITLALKR 342 >pdb|1E4E|B Chain B, D-Alanyl-D-Lacate Ligase Length = 343 Score = 231 bits (589), Expect = 9e-60 Identities = 133/359 (37%), Positives = 205/359 (57%), Gaps = 24/359 (6%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I I+K +++ + +GI K G W + Sbjct: 1 MNRIKVAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKM--------- 51 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGM 119 + P + S P K H L+ +N + + VDV F +HG GEDGS+QG+ Sbjct: 52 CEKPCAEWENENCYSAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +PFVG D+ +SA CMDK +T + ++AG+ F + + +R V + Sbjct: 112 FELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDR------PVAATFT 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+FVKPA GSS GV KV S ++ A++ A ++D K+++EQ + G E+ CAVLGN Sbjct: 166 YPVFVKPARSGSSFGVKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNS-- 223 Query: 240 QASTCGE---IVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTL 293 A GE I L + + E G++ + VPA ++ E +I+ + Y+TL Sbjct: 224 AALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETVKKIYKTL 283 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 GC G+ARVD+FL +V+NE+NTLPGFT+ S YP++ A+G+ +LI RLI LAL+ Sbjct: 284 GCRGLARVDMFLQDRGRIVLNEVNTLPGFTSYSRYPRMMAAAGISLPELIDRLIVLALK 342 >gb|AAD19835.1| (AF060799) D-alanyl-D-alanine ligase [Amycolatopsis orientalis] Length = 348 Score = 231 bits (588), Expect = 1e-59 Identities = 128/356 (35%), Positives = 210/356 (58%), Gaps = 20/356 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +L++GI+FGG S EH +S++SA+ + +D +++ +GI + G W + D Sbjct: 1 MGRLKIGILFGGLSEEHPISIKSAREVQKHLDLEKYEPYYIGITQSGSWMLCDGP----- 55 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGM 119 A+D + +RP+ S P + H L+ G+ +DV+ P++HG GEDG++QG+ Sbjct: 56 AEDWENGDVRPAVLS----PDRGVHGLLVLDEGKYETIALDVVLPVLHGKFGEDGAMQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L ++ +P+VG D+ +S C+DK +T ++R AG+ F +T N + L Sbjct: 112 LEISGIPYVGCDLPSSVMCIDKSLTYSVVRGAGIATPTFHIVTPDNDVD------PDALN 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN-DN 238 P+FVKPA GSS GVSKV+S+E+ A+ A ++D K+++E+ + G EI C++LG+ ++ Sbjct: 166 YPVFVKPARSGSSFGVSKVSSKEELPAALAEARQYDAKILIEEAVIGSEIGCSILGDGED 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 A + LT F+ + E G++ +VPA I D ++ A Y+ LGC Sbjct: 226 LFAGEVDRVALTHGFFKIHQEKSPETGSENSSFIVPADIPDASRDLVQETAKVIYRALGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 +G+ARVD+FL + VV+NE+NTLPG T+ S YP++ A+GL D+I RL++L L Sbjct: 286 SGLARVDLFLKEDGSVVLNEVNTLPGLTSYSRYPRMMNAAGLSLGDVIDRLVKLTL 341 >pdb|1E4E|A Chain A, D-Alanyl-D-Lacate Ligase Length = 343 Score = 231 bits (588), Expect = 1e-59 Identities = 133/359 (37%), Positives = 205/359 (57%), Gaps = 24/359 (6%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I I+K +++ + +GI K G W + Sbjct: 1 MNRIKVAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKM--------- 51 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGM 119 + P + S P K H L+ +N + + VDV F +HG GEDGS+QG+ Sbjct: 52 CEKPCAEWENENCYSAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +PFVG D+ +SA CMDK +T + ++AG+ F + + +R V + Sbjct: 112 FELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDR------PVAATFT 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+FVKPA GSS GV KV S ++ A++ A ++D K+++EQ + G E+ CAVLGN Sbjct: 166 YPVFVKPARSGSSFGVKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNS-- 223 Query: 240 QASTCGE---IVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTL 293 A GE I L + + E G++ + VPA ++ E +I+ + Y+TL Sbjct: 224 AALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETVKKIYKTL 283 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 GC G+ARVD+FL +V+NE+NTLPGFT+ S YP++ A+G+ +LI RLI LAL+ Sbjct: 284 GCRGLARVDMFLQDNGRIVLNEVNTLPGFTSYSRYPRMMAAAGISLPELIDRLIVLALK 342 >sp|P25051|VANA_ENTFC VANCOMYCIN/TEICOPLANIN A-TYPE RESISTANCE PROTEIN VANA (VANA LIGASE) (D-ALANINE--D-LACTATE LIGASE) pir||CESOVM vancomycin resistance protein vanA - Enterococcus faecium plasmid pIP816 emb|CAA40215.1| (X56895) VANA ligase [Enterococcus faecium] gb|AAA65956.1| (M97297) vanA [Transposon Tn1546] Length = 343 Score = 231 bits (588), Expect = 1e-59 Identities = 133/359 (37%), Positives = 205/359 (57%), Gaps = 24/359 (6%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I I+K +++ + +GI K G W + + Sbjct: 1 MNRIKVAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGM 119 D+ L P K H L+ +N + + VDV F +HG GEDGS+QG+ Sbjct: 61 NDNCYSAVLSPD---------KKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +PFVG D+ +SA CMDK +T + ++AG+ F + + +R V + Sbjct: 112 FELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDR------PVAATFT 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+FVKPA GSS GV KV S ++ A++ A ++D K+++EQ + G E+ CAVLGN Sbjct: 166 YPVFVKPARSGSSFGVKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNS-- 223 Query: 240 QASTCGE---IVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTL 293 A GE I L + + E G++ + VPA ++ E +I+ A + Y+ L Sbjct: 224 AALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETAKKIYKAL 283 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 GC G+ARVD+FL +V+NE+NTLPGFT+ S YP++ A+G+ +LI RLI LAL+ Sbjct: 284 GCRGLARVDMFLQDNGRIVLNEVNTLPGFTSYSRYPRMMAAAGIALPELIDRLIVLALK 342 >gb|AAF72363.1|AF192329_24 (AF192329) VanB [Enterococcus faecalis] Length = 342 Score = 231 bits (588), Expect = 1e-59 Identities = 131/359 (36%), Positives = 205/359 (56%), Gaps = 23/359 (6%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I I+ +FD +GI K G W + Sbjct: 1 MNRIKVAIIFGGCSEEHDVSVKSAIEIAANINTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADD-PAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQG 118 AD PA ++ P + H L+ + + +DV FP++HG GEDG++QG Sbjct: 61 ADSLPAILS-----------PDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQG 109 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 + ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 110 LFELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPE------AGAL 163 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN-D 237 P+FVKPA GSS GV+KV E+ A++ A ++D K+++EQ I G E+ CAV+GN D Sbjct: 164 TYPVFVKPARSGSSFGVTKVNGTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNED 223 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDG---AKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 + +I L+ + + E G A + VPA I E ++++ A + Y+ LG Sbjct: 224 DLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLG 283 Query: 295 CAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 C G+ARVD+FL + +V+NE+NTLPGFT+ S YP++ A+G+ LI LI LAL+R Sbjct: 284 CRGLARVDLFLQEDGGIVLNEVNTLPGFTSYSRYPRMVAAAGITLPALIDSLITLALKR 342 >gb|AAC23582.1| (U82965) D-alanine:D-alanine ligase-related protein [Streptomyces toyocaensis] Length = 340 Score = 229 bits (584), Expect = 3e-59 Identities = 128/347 (36%), Positives = 203/347 (57%), Gaps = 18/347 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +L++GIVFGG+S EH VS++SA+ + +D +++ +GI K G W + D + Sbjct: 1 MARLKIGIVFGGRSEEHPVSIKSAREVARNLDLEKYEPFYIGITKSGAWKLCDGPDAEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 D + L P + V G L+ Q G +DV+ P++HG LGEDG++QG+L Sbjct: 61 DGDCRPVVLSPD----SDVHG----LLVLEQGGCSTIRLDVVLPVLHGKLGEDGAMQGLL 112 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 ++ +P+VG D+ +SA CMDK + ++R+AG+ F T+ A + A + Sbjct: 113 ELSGIPYVGCDIQSSAVCMDKSLAYAVVRNAGIATPNFWTV--AADETVDAA----RFTY 166 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN-DNP 239 P+FVKPA GSS GV+KV+ EE+ + AV+ A ++D KV++E+ + G EI CA+LG + Sbjct: 167 PVFVKPARSGSSFGVTKVSREEEMSSAVETARQYDSKVLIEEAVPGSEIGCAILGTGTDL 226 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 I L+ F+ + E G++ +VPA I +++ A Y+ LGC Sbjct: 227 VVGEVDRIALSHGFFRIHQEDSPETGSENSIAIVPADIPEASRLRVQEEAKAVYRVLGCR 286 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLI 343 G+ARVD+FL + EVV+NE+NTLPG T+ S YP++ A+GL +++I Sbjct: 287 GIARVDMFLKEDGEVVLNEVNTLPGLTSYSRYPRMMAAAGLPMSEVI 333 >gb|AAG34684.1|AF310954_1 (AF310954) ligase VanB2 [Enterococcus faecium] Length = 342 Score = 229 bits (583), Expect = 5e-59 Identities = 130/359 (36%), Positives = 204/359 (56%), Gaps = 23/359 (6%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V +FGG S EH+VS++SA I ID +FD +GI K G W + Sbjct: 1 MNRIKVATIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADD-PAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQG 118 AD PA ++ P + H L+ + + +DV FP++HG GEDG++QG Sbjct: 61 ADSLPAILS-----------PDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQG 109 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 + ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 110 LFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPE------AGAL 163 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN-D 237 P+FVKPA GSS G++KV E+ A++ A ++D K+++EQ I G E+ CAV+GN D Sbjct: 164 TYPVFVKPARAGSSFGLTKVNGTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNED 223 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDG---AKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 + +I L+ + + E G A + VPA I E ++++ A + Y+ LG Sbjct: 224 DLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLG 283 Query: 295 CAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 C G+ARVD+FL + +V+NE+NTLPGFT+ S YP++ A+G+ LI LI LAL+R Sbjct: 284 CRGLARVDLFLQEDGGIVLNEVNTLPGFTSYSRYPRMMAAAGITLPALIDSLITLALKR 342 >gb|AAG34685.1|AF310955_1 (AF310955) ligase VanB2 [Enterococcus faecalis] gb|AAG34693.1|AF310957_1 (AF310957) ligase VanB2 [Enterococcus faecium] Length = 342 Score = 228 bits (582), Expect = 5e-59 Identities = 130/359 (36%), Positives = 204/359 (56%), Gaps = 23/359 (6%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V +FGG S EH+VS++SA I ID +FD +GI K G W + Sbjct: 1 MNRIKVATIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADD-PAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQG 118 AD PA ++ P + H L+ + + +DV FP++HG GEDG++QG Sbjct: 61 ADSLPAILS-----------PDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQG 109 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 + ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 110 LFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPE------AGAL 163 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN-D 237 P+FVKPA GSS GV+KV E+ A++ A ++D K+++EQ I G E+ CAV+GN D Sbjct: 164 TYPVFVKPARSGSSFGVTKVNGPEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNED 223 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDG---AKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 + +I L+ + + E G A + VPA I E ++++ A + Y+ LG Sbjct: 224 DLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLG 283 Query: 295 CAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 C G+ARVD+FL + +V+NE+NT+PGFT+ S YP++ A+G+ LI LI LAL+R Sbjct: 284 CRGLARVDLFLQEDGGIVLNEVNTMPGFTSYSRYPRMVAAAGITLPALIDSLITLALKR 342 >gb|AAG34683.1|AF310953_1 (AF310953) ligase VanB2 [Enterococcus faecium] Length = 342 Score = 228 bits (582), Expect = 6e-59 Identities = 129/359 (35%), Positives = 204/359 (55%), Gaps = 23/359 (6%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V +FGG S EH+VS++SA I ID +FD +GI K G W + Sbjct: 1 MNRIKVATIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADD-PAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQG 118 AD PA ++ P + H L+ + + +DV FP++HG GEDG++QG Sbjct: 61 ADSLPAILS-----------PDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQG 109 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 + ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 110 LFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPE------AGAL 163 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN-D 237 P+FVKPA GSS G++KV E+ A++ A ++D K+++EQ I G E+ CAV+GN D Sbjct: 164 TYPVFVKPARSGSSFGLTKVNGTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNED 223 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDG---AKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 + +I L+ + + E G A + VPA I E ++++ A + Y+ LG Sbjct: 224 DLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLG 283 Query: 295 CAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 C G+ARVD+FL + +V+NE+NTLPGFT+ S YP++ A+G+ +I LI LAL+R Sbjct: 284 CRGLARVDLFLQEDGGIVLNEVNTLPGFTSYSRYPRMMAAAGITLPAMIDSLITLALKR 342 >sp|Q47823|DDL_ENTGA D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAB17903.1| (U39789) D-alanine:D-alanine ligase [Enterococcus gallinarum] Length = 316 Score = 215 bits (547), Expect = 6e-55 Identities = 122/327 (37%), Positives = 193/327 (58%), Gaps = 31/327 (9%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQW------HVSDASNY 57 +++ +++GG+SAEH+VSL SA ++V+A+ + + V L+ I + GQW + S Sbjct: 1 MKIILLYGGRSAEHDVSLLSAFSVVNAVYYNYYQVQLVMITRDGQWLKGSLLTEAPTSKE 60 Query: 58 LLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ 117 +LN D A +Q Q G+ ++FP++HG GEDG++Q Sbjct: 61 VLNLTDSA-------------------YQGTPIQPGEIKEEDAIVFPLLHGPNGEDGTIQ 101 Query: 118 GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT----RANRHNISFAE 173 G L +P+VG+ VL SA MDK +TK +L+ AG+ P++ + + N + F + Sbjct: 102 GFLETIGMPYVGAGVLTSACGMDKIMTKYILQAAGIPQVPYVPVLKNYWKENPKKV-FEQ 160 Query: 174 VESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAV 233 E L P+F+KPAN GSSVG++K + E+ A+ A+ +D + IVEQGI+ REIE AV Sbjct: 161 CEGSLLYPMFIKPANMGSSVGITKAENREELQNALQEAYRYDTRAIVEQGIEAREIEVAV 220 Query: 234 LGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 LGN++ + + GEIV FY Y++KY+D + ++ +PA I E K + A +AY L Sbjct: 221 LGNEDVRTTMPGEIVKDVAFYDYNSKYLD-NKIEMQIPAQIPEETQAKAQEFAKKAYTML 279 Query: 294 GCAGMARVDVFLTPENEVVINEINTLP 320 G +G++R D FLT +NE+ +NE+NT+P Sbjct: 280 GGSGLSRCDFFLTNKNELFLNELNTIP 306 >gb|AAA60990.1| (L29638) ligase [Enterococcus casseliflavus] Length = 350 Score = 214 bits (546), Expect = 9e-55 Identities = 133/357 (37%), Positives = 198/357 (55%), Gaps = 21/357 (5%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKS--RFDVVLLGIDKQGQWHVSDASNYLLNAD 62 ++ I+FGG S E+ VSL SA + ++A+ S +D+ L+GI DA ++ L Sbjct: 3 KIAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGI-------APDAMDWYLYTG 55 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNG------QPLPTVDVIFPIVHGTLGEDGSL 116 + +I T L K + Q + NG Q DV+FPI+HG GEDGS+ Sbjct: 56 ELENIR---QDTWLLDTKHKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSI 112 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT-RANRHNISFAEVE 175 QG+ + LP+VG V SA CM+K + + G+ AP I LT +AN+ A ++ Sbjct: 113 QGLFELMKLPYVGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQ 172 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 + G P+F KP GSS G++KVT E+ A A+ AF + V++++ I G EI C +LG Sbjct: 173 TH-GFPVFFKPNEAGSSKGITKVTCVEEIASALKEAFTYCSAVLLQKNIAGVEIGCGILG 231 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 ND+ C I L F+ ++ KY AK+ VPA + I K++ A Y++LG Sbjct: 232 NDSLTVGACDAISLVDGFFDFEEKY-QLISAKITVPAPLPETIETKVKEQAQLLYRSLGL 290 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 G+AR+D F+T E+ +NEINT+PGFT+ S YP + A GL Y +L+ +L+ LA E Sbjct: 291 KGLARIDFFVTERGELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLLVLAKE 347 >gb|AAL27442.1|AF430807_7 (AF430807) VanE [Enterococcus faecalis] Length = 352 Score = 213 bits (542), Expect = 3e-54 Identities = 113/351 (32%), Positives = 205/351 (58%), Gaps = 12/351 (3%) Query: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 V I+FGG S+E+EVSL+SA I+ ++ ++V+ +GI ++G W++ + + + D Sbjct: 4 VAIIFGGVSSEYEVSLKSAVAIIKNMESIDYNVMKIGITEEGHWYLFEGTTDKIKKD--- 60 Query: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 L S + K L +N + + D++FP++HG GE+G++QG+ + ++ Sbjct: 61 RWFLDESCEEIVVDFAKKSFVL---KNSKKIIKPDILFPVLHGGYGENGAMQGVFELLDI 117 Query: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN--RHNISFAEVESKLGLPLF 183 P+VG + A+A M+K + + G+ P + + + + +FA++ G PL+ Sbjct: 118 PYVGCGIGAAAISMNKIMLHQFAEAIGVKSTPSMIIEKGQDLQKVDAFAKIH---GFPLY 174 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 +KP GSS G+SKV + A+D A ++D ++++++ +KG EI C +LGN+ Sbjct: 175 IKPNEAGSSKGISKVERKSDLYKAIDEASKYDSRILIQKEVKGVEIGCGILGNEQLVVGE 234 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 C +I L F+ Y+ KY + A++++PA ++ + + I+ A + Y+ LGC G+AR+D Sbjct: 235 CDQISLVDGFFDYEEKY-NLVTAEILLPAKLSIDKKEDIQMKAKKLYRLLGCKGLARIDF 293 Query: 304 FLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 FLT + E+++NEINT+PGFT S +P + G+ Y ++I L+ LA+E H Sbjct: 294 FLTDDGEILLNEINTMPGFTEHSRFPMMMNEIGMDYKEIIENLLVLAVENH 344 >sp|P29753|VANC_ENTGA VANCOMYCIN C-TYPE RESISTANCE PROTEIN VANC (VANC LIGASE) pir||JN0249 vancomycin resistance protein vanC - Enterococcus gallinarum gb|AAA24786.1| (AF162694) D-alanine-D-alanine ligase-related protein [Enterococcus gallinarum] Length = 343 Score = 211 bits (538), Expect = 7e-54 Identities = 121/352 (34%), Positives = 187/352 (52%), Gaps = 18/352 (5%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 ++ ++FGG S E+ VSL SA +++ AID +++V+ +GI W+ + L N + Sbjct: 3 KIAVLFGGNSPEYSVSLTSAASVIQAIDPLKYEVMTIGIAPTMDWYWYQGN--LANVRND 60 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQN----GQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + K+ HQL + G+ DV+FP++HG GEDG +QG+L Sbjct: 61 TWLE-----------DHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLL 109 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + NLP+VG V ASA CM+K + +L G+ AP + L+R + G Sbjct: 110 ELMNLPYVGCHVAASALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGF 169 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+F+KP GSS G++KVT + A+ AF + V++++ I G EI C +LGN+ Sbjct: 170 PIFIKPNEAGSSKGITKVTDKTALQSALTTAFAYGSTVLIQKAIAGIEIGCGILGNEQLT 229 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 C I L F+ ++ KY A + VPA + + +I+ A Y+ LG G+AR Sbjct: 230 IGACDAISLVDGFFDFEEKY-QLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLAR 288 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 +D F+T + + +NEINT+PGFT S YP + GL Y L+ +LI LA E Sbjct: 289 IDFFVTNQGAIYLNEINTMPGFTGHSRYPAMMAEVGLSYEILVEQLIALAEE 340 >pir||T51694 D-alanine--D-alanine ligase (EC 6.3.2.4) [imported] - Prochlorococcus sp. (fragment) emb|CAB56200.1| (AJ011025) D-alanine-D-alanine ligase [Prochlorococcus sp.] Length = 310 Score = 201 bits (512), Expect = 6e-51 Identities = 111/315 (35%), Positives = 185/315 (58%), Gaps = 19/315 (6%) Query: 43 IDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVI 102 ++K G W +D S LL + QV K E I+ N +D+ Sbjct: 5 VNKHGVWLDNDQSLVLLKEKR------KNETIDKNQVFPKRE---INFLNTIEFQGIDIW 55 Query: 103 FPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT 162 FP++HG GEDG++ G+L+ P VG +L SA MDK + K++ + ++ + Sbjct: 56 FPLLHGVNGEDGAIHGLLKFTQKPIVGGGILGSALGMDKILMKKIFSHLEIPQVNYLDIQ 115 Query: 163 RAN------RHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH 216 + ++N+S E+ KL LP+FVKPAN GSS+G+SK + + A+ A+E D Sbjct: 116 NQDLSDDKVKNNLS-VEIIEKLKLPVFVKPANSGSSLGISKAKTRSEIIKALQKAWEIDS 174 Query: 217 KVIVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAP 276 ++++E+G+ RE+EC ++GN AS GE+ ++D+Y YD+KY ++ ++++PA I Sbjct: 175 RIVIEEGLDVRELECGIIGNLKLTASEIGEVSYSTDWYDYDSKYSMDN--QIIIPADIDS 232 Query: 277 EINDKIRAIAVQAYQTLGCAGMARVDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQAS 335 +I+++I+ IA+++ + L G ARVD FL N++ +NEINT+PGFT+ SM+P LW AS Sbjct: 233 QISEQIKDIAIRSCRALNIYGFARVDFFLEKISNKIFLNEINTIPGFTSKSMFPMLWNAS 292 Query: 336 GLGYTDLITRLIELA 350 GL L+ +L++++ Sbjct: 293 GLNIDQLVAKLVDIS 307 >emb|CAB95026.1| (AJ237851) D-alanine-D-alanine ligase [Prochlorococcus marinus] Length = 247 Score = 199 bits (505), Expect = 4e-50 Identities = 104/246 (42%), Positives = 154/246 (62%), Gaps = 7/246 (2%) Query: 111 GEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPF-----ITLTRAN 165 GEDGS+QG ++ P+VGS VL SA MDK K AGL + I L Sbjct: 3 GEDGSIQGFFQLTGKPYVGSGVLGSALGMDKIAMKAAFSAAGLPQVNYCEIHSIDLLDKK 62 Query: 166 RHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIK 225 R + ++E++LG P F+KPAN GSSVG+SK +++ +DLA + D +++VE+ IK Sbjct: 63 RLSYLIQKIETQLGYPCFIKPANLGSSVGISKAYDKKELLNGLDLAAQLDSRIVVEKNIK 122 Query: 226 GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAI 285 RE+ECAV+G + S GE+ +SD+Y YD+KY ++ K ++PA I +I+ +++++ Sbjct: 123 ARELECAVIGKKQIKTSCVGEVRYSSDWYDYDSKY-SKNSTKTLIPAPIPEKISKEVQSL 181 Query: 286 AVQAYQTLGCAGMARVDVFLTPENEVV-INEINTLPGFTNISMYPKLWQASGLGYTDLIT 344 ++ A + + G+ARVD F E + + INEINT+PGFT SMYP LW ASG+ + L+ Sbjct: 182 SILACKAISAEGIARVDFFYDEEKDSLWINEINTMPGFTEQSMYPMLWDASGIDISQLVA 241 Query: 345 RLIELA 350 RLIE A Sbjct: 242 RLIESA 247 >ref|NP_212334.1| (NC_001318) D-alanine--D-alanine ligase (ddlA) [Borrelia burgdorferi] sp|O51218|DDL_BORBU D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||H70124 D-alanine--D-alanine ligase (ddlA) homolog - Lyme disease spirochete gb|AAC66589.1| (AE001130) D-alanine--D-alanine ligase (ddlA) [Borrelia burgdorferi] Length = 356 Score = 195 bits (495), Expect = 6e-49 Identities = 123/357 (34%), Positives = 205/357 (56%), Gaps = 23/357 (6%) Query: 8 IVFGGKSAEHEVSLQSAKNIVDA-IDKSRFDVVLLGIDK-QGQWHVSDASNYLLNADDPA 65 ++FGG S EHE+S +SA +I A +D +++++ + IDK G W++ D+ + + P Sbjct: 2 LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVS---DPPKPI 58 Query: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 + + P + L PG N + L +DV+FP+VHG GEDG++QG+L+V ++ Sbjct: 59 NTDVLPIVSLL---PG-----FGIFSNNKNL-EIDVVFPVVHGRTGEDGAIQGVLKVMDI 109 Query: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK----LGLP 181 P VG+ ++ SA +K K LL+ + + PFI R + + + E++ LG P Sbjct: 110 PCVGAGIIGSAISSNKYFCKLLLKSFDIPLVPFIGF-RQHDYFLDKEEIKRNVKEVLGYP 168 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 + VKPA GSS+G++ SE Q + A ++D +++E+ I+ REIEC+++GN+ + Sbjct: 169 VIVKPAVLGSSIGINVAYSENQIESFIKEALKYDLTIVIEKFIEAREIECSIIGNEKMKI 228 Query: 242 STCGEIVLTS-DFYAYDTKYIDEDGAKVV--VPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 + GE+V+ FY YD KY G ++ +PA + I+ A Y+ L GM Sbjct: 229 FSPGEVVVQDFIFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLTYKNLELRGM 288 Query: 299 ARVDVFLTPEN-EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 ARVD F+ ++ + +NEINT+PGFT+ISM+ K+ GL + DL+ LI+ A + + Sbjct: 289 ARVDFFVEKKSGTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYAFQSY 345 >ref|NP_245081.1| (NC_002663) DdlB [Pasteurella multocida] sp|P57819|DDL_PASMU D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAK02228.1| (AE006049) DdlB [Pasteurella multocida] Length = 309 Score = 179 bits (455), Expect = 3e-44 Identities = 113/352 (32%), Positives = 179/352 (50%), Gaps = 47/352 (13%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 +++ ++ ++ GG SAE EVSL S + +++A+ + FD H D + Sbjct: 5 LKQEKIAVLLGGTSAEREVSLDSGQAVLNALLSAGFDA-----------HPIDPKTF--- 50 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 P AT Q D +F I+HG GEDG++QG+L Sbjct: 51 ----------PVATLKEQ-------------------GFDRVFNILHGRGGEDGTMQGLL 81 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 +P+ G V+ SA MDK TK L + GL +A +T+AN ++ + V KLGL Sbjct: 82 EQIGIPYTGCGVMTSALTMDKMRTKMLWKAFGLPVAEMEIVTKANVGELNPSAVVEKLGL 141 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+ VKP+ +GSSVG++KV E AVD A ++D V++E+ + G E VL N + Sbjct: 142 PVMVKPSLEGSSVGLTKVKRVEDLKSAVDFALKYDDTVLIEEWLSGAEFTVPVLDN---E 198 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 IV +FY Y+ KYI D + P+ ++ E D+++ + QAY +GC G +R Sbjct: 199 VLPSIRIVPEGEFYDYEAKYI-SDNTQYFCPSGLSAEREDELKQLVKQAYDVVGCRGWSR 257 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 +DV L + + E+NT PG T+ S++PK G + L+ +++EL+ E Sbjct: 258 IDVMLDGNDAFRLVEVNTNPGMTSHSLFPKSAATVGYSFEQLVVKILELSAE 309 >emb|CAC84690.1| (AJ306727) D-Ala:D-Lac ligase [Enterococcus faecium] Length = 289 Score = 177 bits (450), Expect = 1e-43 Identities = 105/306 (34%), Positives = 166/306 (53%), Gaps = 23/306 (7%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I ID +FD +GI K G W + Sbjct: 1 MNRIKVAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADD-PAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQG 118 AD PA ++ P + H L+ + + +DV FP++HG GEDG++QG Sbjct: 61 ADSLPAILS-----------PDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQG 109 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 + ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 110 LFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPE------AGAL 163 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN-D 237 P+FVKPA GSS GV+KV E+ A++ A ++D K+++EQ I G E+ CAV+GN D Sbjct: 164 TYPVFVKPARSGSSFGVTKVNGTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNED 223 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDG---AKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 + +I L+ + + E G A + VPA I E +++ A + Y+ LG Sbjct: 224 DLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERKRVQETAKKVYRVLG 283 Query: 295 CAGMAR 300 C G+AR Sbjct: 284 CRGLAR 289 >ref|NP_439298.1| (NC_000907) D-alanine--D-alanine ligase (ddlB) [Haemophilus influenzae Rd] sp|P44405|DDL_HAEIN D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||F64185 D-alanine--D-alanine ligase (EC 6.3.2.4) B - Haemophilus influenzae (strain Rd KW20) gb|AAC22795.1| (U32794) D-alanine--D-alanine ligase (ddlB) [Haemophilus influenzae Rd] Length = 306 Score = 177 bits (449), Expect = 2e-43 Identities = 112/351 (31%), Positives = 181/351 (50%), Gaps = 47/351 (13%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 +++ ++ ++ GG SAE EVSL S K +++A+ K ++ Sbjct: 3 LKQEKIAVLLGGTSAEREVSLNSGKAVLEALLKQGYN----------------------- 39 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 AH + P ++A + ++G + F I+HG GEDG++QG+L Sbjct: 40 ----AH-PIDPKEYNVANL----------KKDG-----FNRAFNILHGRGGEDGTMQGLL 79 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 LP+ G V+ASA MDK TK L + GL +A +TR + V +KLGL Sbjct: 80 EQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFSELDPQAVVAKLGL 139 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 PL VKP+ +GSSVG++KV + E+ AV+ A +FD+ +++E+ + G E+ VL N Q Sbjct: 140 PLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKFDNTILIEEWLAGDELTVPVLDN---Q 196 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 IV +FY Y+ KYI D + PA + PE + + +AY +GC G +R Sbjct: 197 VLPAIRIVPEGEFYDYEAKYI-SDNTQYFCPAGLTPEREQALSTLVKRAYDAVGCRGWSR 255 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 +DV + + E+NT PG T+ S++PK G+ + L+ +++EL+L Sbjct: 256 IDVMCDAKGNFRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILELSL 306 >emb|CAC84688.1| (AJ306726) D-Ala:D-Lac ligase [Enterococcus faecium] Length = 289 Score = 176 bits (445), Expect = 4e-43 Identities = 104/306 (33%), Positives = 166/306 (53%), Gaps = 23/306 (7%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I ID +FD +GI K G W + Sbjct: 1 MNRIKVAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADD-PAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQG 118 AD PA ++ P + H L+ + + +DV FP++HG GEDG++QG Sbjct: 61 ADSLPAILS-----------PDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQG 109 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 + ++ +P+VG D+ +SAAC+DK + L ++AG+ + F + + ++ L Sbjct: 110 LFVLSGIPYVGCDIQSSAACVDKSLAYILTKNAGIAVPEFQMIDKGDKPE------AGAL 163 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN-D 237 P+FVKPA GSS GV+KV E+ A++ A ++D K+++EQ I G E+ CAV+GN D Sbjct: 164 TYPVFVKPARSGSSFGVTKVNGTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNED 223 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDG---AKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 + +I L+ + + E G A + VPA I E +++ A + Y+ LG Sbjct: 224 DLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERKRVQETAKKVYRVLG 283 Query: 295 CAGMAR 300 C G+AR Sbjct: 284 CRGLAR 289 >ref|NP_414634.1| (NC_000913) D-alanine-D-alanine ligase B, affects cell division [Escherichia coli K12] sp|P07862|DDLB_ECOLI D-ALANINE--D-ALANINE LIGASE B (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||CEECDL D-alanine--D-alanine ligase (EC 6.3.2.4) B - Escherichia coli pdb|1IOV| Complex Of D-Ala:d-Ala Ligase With Adp And A Phosphoryl Phosphonate pdb|2DLN| Mol_id: 1; Molecule: D-Alanine--D-Alanine Ligase; Chain: Null; Ec: 6.3.2.4 emb|CAA38869.1| (X55034) D-Ala:D-Ala ligase (Ddl) [Escherichia coli] gb|AAA23672.1| (M14029) ddl cell wall enzyme [Escherichia coli] gb|AAA23815.1| (K02668) D-alanine:D-alanine ligase [Escherichia coli] dbj|BAA01357.1| (D10483) D-alanine-D-alanine ligase [Escherichia coli] gb|AAC73203.1| (AE000118) D-alanine-D-alanine ligase B, affects cell division [Escherichia coli K12] Length = 306 Score = 175 bits (443), Expect = 7e-43 Identities = 99/253 (39%), Positives = 152/253 (59%), Gaps = 9/253 (3%) Query: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITL 161 +F +HG GEDG+LQGML + LP+ GS V+ASA MDK +K L + AGL +AP++ L Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVAL 117 Query: 162 TRANRH----NISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHK 217 TRA + AE+ S LGLP+ VKP+ +GSSVG+SKV +E A+ LAF+ D + Sbjct: 118 TRAEFEKGLSDKQLAEI-SALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEE 176 Query: 218 VIVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPE 277 V++E+ + G E A+LG + + I + FY Y+ KY+ D + PA + Sbjct: 177 VLIEKWLSGPEFTVAILGEEILPSI---RIQPSGTFYDYEAKYL-SDETQYFCPAGLEAS 232 Query: 278 INDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGL 337 ++A+ ++A+ TLGC G R+DV L + + + E NT PG T+ S+ P + +G+ Sbjct: 233 QEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGM 292 Query: 338 GYTDLITRLIELA 350 ++ L+ R++ELA Sbjct: 293 SFSQLVVRILELA 305 >ref|NP_285788.1| (NC_002655) D-alanine-D-alanine ligase B, affects cell division [Escherichia coli O157:H7 EDL933] ref|NP_308123.1| (NC_002695) D-alanine-D-alanine ligase B [Escherichia coli O157:H7] gb|AAG54396.1|AE005186_2 (AE005186) D-alanine-D-alanine ligase B, affects cell division [Escherichia coli O157:H7 EDL933] dbj|BAB33519.1| (AP002550) D-alanine-D-alanine ligase B [Escherichia coli O157:H7] Length = 306 Score = 174 bits (440), Expect = 2e-42 Identities = 98/253 (38%), Positives = 151/253 (58%), Gaps = 9/253 (3%) Query: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITL 161 +F +HG GEDG+LQGML + LP+ GS V+ASA MDK +K L + AGL +AP++ L Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVAL 117 Query: 162 TRANRH----NISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHK 217 TR + AE+ S LGLP+ VKP+ +GSSVG+SKV +E A+ LAF+ D + Sbjct: 118 TRVEFEKGLSDKQLAEI-SALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEE 176 Query: 218 VIVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPE 277 V++E+ + G E A+LG + + I + FY Y+ KY+ D + PA + Sbjct: 177 VLIEKWLSGPEFTVAILGEEILPSV---RIQPSGTFYDYEAKYL-SDETQYFCPAGLEAS 232 Query: 278 INDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGL 337 ++A+ ++A+ TLGC G R+DV L + + + E NT PG T+ S+ P + +G+ Sbjct: 233 QEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGM 292 Query: 338 GYTDLITRLIELA 350 ++ L+ R++ELA Sbjct: 293 SFSQLVVRILELA 305 >pdb|1IOW| Complex Of Y216f D-Ala:d-Ala Ligase With Adp And A Phosphoryl Phosphinate Length = 306 Score = 173 bits (439), Expect = 2e-42 Identities = 98/253 (38%), Positives = 152/253 (59%), Gaps = 9/253 (3%) Query: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITL 161 +F +HG GEDG+LQGML + LP+ GS V+ASA MDK +K L + AGL +AP++ L Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVAL 117 Query: 162 TRANRH----NISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHK 217 TRA + AE+ S LGLP+ VKP+ +GSSVG+SKV +E A+ LAF+ D + Sbjct: 118 TRAEFEKGLSDKQLAEI-SALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEE 176 Query: 218 VIVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPE 277 V++E+ + G E A+LG + + I + FY Y+ K++ D + PA + Sbjct: 177 VLIEKWLSGPEFTVAILGEEILPSI---RIQPSGTFYDYEAKFL-SDETQYFCPAGLEAS 232 Query: 278 INDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGL 337 ++A+ ++A+ TLGC G R+DV L + + + E NT PG T+ S+ P + +G+ Sbjct: 233 QEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGM 292 Query: 338 GYTDLITRLIELA 350 ++ L+ R++ELA Sbjct: 293 SFSQLVVRILELA 305 >ref|NP_252890.1| (NC_002516) D-alanine-D-alanine ligase A [Pseudomonas aeruginosa] pir||E83121 D-alanine-D-alanine ligase A PA4201 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG07588.1|AE004836_7 (AE004836) D-alanine-D-alanine ligase A [Pseudomonas aeruginosa] Length = 346 Score = 173 bits (439), Expect = 2e-42 Identities = 118/359 (32%), Positives = 189/359 (51%), Gaps = 32/359 (8%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +KL+V ++FGG S E +VS+ S ++ A+ + V+ + D ++ LL A Sbjct: 4 DKLKVAVLFGGSSEERDVSIASGAQVIQALRSAGHQVLAV-----------DTASGLLGA 52 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPT------VDVIFPIVHGTLGEDGS 115 ++ R A+ + +VP + I Q L + VDV F +HG GEDG+ Sbjct: 53 EEER----RLLASKVKEVPPDSDSLAIIRSGKQSLLSAGELAGVDVFFLALHGGTGEDGT 108 Query: 116 LQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVE 175 LQ +L + GS LASA MDKDV KRL AG+ A ++ + EV Sbjct: 109 LQALLDAGGFAYTGSGHLASAMAMDKDVAKRLFLAAGVETASWLMAPASEE------EVR 162 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 +LG PL VKP +QGS+VG+S V S+ + A++LA + +V++E+ + GRE+ VL Sbjct: 163 EQLGFPLVVKPNSQGSTVGLSIVHSQAELQPAIELAGRYGDEVMLERFVAGREVTVGVLD 222 Query: 236 NDNPQASTCGEIVL-TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 + QA GEI+L + + Y+ KY + V PA + P I + + +A++ ++ L Sbjct: 223 D---QALPVGEILLGGQEVFDYEHKY-QAGAVREVFPADLPPAIAAEAQRLALKVHRALK 278 Query: 295 CAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 +G +R D L + + E+NTLPG T S+ P+ A+G+G+ +L R+ L +ER Sbjct: 279 LSGYSRTDFRLDEQGRLWCLEVNTLPGMTATSLLPQAAAAAGIGFAELCERICRLGIER 337 >ref|NP_220281.1| (NC_000117) UDP-N-acetylmuramate-alanine ligase and D-Ala-D-Ala Ligase [Chlamydia trachomatis] sp|O84767|MUDD_CHLTR MURC/DDL BIFUNCTIONAL ENZYME [INCLUDES: UDP-N-ACETYLMURAMATE--ALANINE LIGASE (UDP-N-ACETYLMURAMOYL-L-ALANINE SYNTHETASE); D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE)] pir||A71475 probable muramate-Ala ligase and D-Ala-D-Ala ligase - Chlamydia trachomatis (serotype D, strain UW3/Cx) gb|AAC68357.1| (AE001348) UDP-N-acetylmuramate-alanine ligase and D-Ala-D-Ala Ligase [Chlamydia trachomatis] Length = 803 Score = 171 bits (433), Expect = 1e-41 Identities = 116/360 (32%), Positives = 183/360 (50%), Gaps = 30/360 (8%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +KL +GI+ GGKS EHE+S+ SAKNI + KS +DV I ++G W ++ + L A Sbjct: 446 QKLHLGIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITREGLW---ESVSSLETA 502 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 +D GK + D + Q L VDV+ PI+HG GEDG++QG L Sbjct: 503 ED----------------SGK---SVFDPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLE 543 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA---NRHNISFAEVESKL 178 P+ G + SA M+K TKR + D G+ + P++ LT A + A + Sbjct: 544 TIGKPYTGPAIAFSAIAMNKVFTKRFMSDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAF 603 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGND 237 P+FVK ++ GSS+GV +V + + A++ AF D+ V VE+ G +EIE +VLG+ Sbjct: 604 SFPIFVKSSHLGSSIGVFEVHNVIELRDAINEAFMRDNDVFVEENRLGCKEIEVSVLGDG 663 Query: 238 NPQASTCG--EIVLTSDFYAYDTKY--IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 + G E + F Y KY + A++V ++ EI ++I A + Y+ L Sbjct: 664 SGAFVVAGLHERRGSGGFIDYQEKYGLSGKSSAQIVFDTDLSKEIQEQILEAADKIYRLL 723 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G R+D F+ E ++E+N +PG T S + + G Y ++ +L+ L+R Sbjct: 724 LGKGSCRIDFFVDEEGNFWLSEMNPIPGMTETSPFLTSFIRKGWSYEQIVHQLVIDGLQR 783 >ref|NP_454742.1| (NC_003198) D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica serovar Typhi] emb|CAD01287.1| (AL627265) D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica serovar Typhi] Length = 306 Score = 169 bits (429), Expect = 3e-41 Identities = 111/349 (31%), Positives = 179/349 (50%), Gaps = 50/349 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 ++ ++ GG SAE +VSL S ++ + + GID Sbjct: 4 KIAVLLGGTSAERDVSLNSGAAVLAGLREG-------GID-------------------- 36 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 AH + P +AQ+ + +F +HG GEDG+LQGML + Sbjct: 37 AH-PVDPQEVDVAQLKAMGFQK---------------VFIALHGRGGEDGTLQGMLELLG 80 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK---LGLP 181 LP+ GS V+ASA MDK +K L + AGL +AP++ LTRA E +++ LGLP Sbjct: 81 LPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSEEQKARISALGLP 140 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 L VKP+ +GSSVG++KV E A+ LAF+ D ++++E+ + G E A++G + + Sbjct: 141 LIVKPSREGSSVGMTKVVEENALQGALSLAFQHDDEILIEKWLCGPEFTVAIVGEEILPS 200 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 I FY Y+ KY+ D + PA + ++++ +QA++ LGC G R+ Sbjct: 201 I---RIQPAGTFYDYEAKYL-SDETQYFCPAGLEASQEAALQSLVLQAWKALGCTGWGRI 256 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 DV L + + + E NT PG T+ S+ P + +G+ ++ L+ R++ELA Sbjct: 257 DVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 >ref|NP_459135.1| (NC_003197) D-alanine-D-alanine ligase B, affects cell division [Salmonella typhimurium LT2] gb|AAL19094.1| (AE008700) D-alanine-D-alanine ligase B, affects cell division [Salmonella typhimurium LT2] Length = 306 Score = 169 bits (427), Expect = 6e-41 Identities = 112/349 (32%), Positives = 179/349 (51%), Gaps = 50/349 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 ++ ++ GG SAE +VSL S VL G+ + G +NA Sbjct: 4 KIAVLLGGTSAERDVSLNSGA------------AVLAGLREGG-----------INAH-- 38 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 + P +AQ+ + +F +HG GEDG+LQGML + Sbjct: 39 ---PVDPQEVDVAQLKAMGFQK---------------VFIALHGRGGEDGTLQGMLELLG 80 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK---LGLP 181 LP+ GS V+ASA MDK +K L + AGL +AP++ LTRA E +++ LGLP Sbjct: 81 LPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSEEQKARISALGLP 140 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 L VKP+ +GSSVG++KV E A+ LAF+ D ++++E+ + G E A++G + + Sbjct: 141 LIVKPSREGSSVGMTKVVEENALQGALSLAFQHDDEILIEKWLCGPEFTVAIVGEEILPS 200 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 I FY Y+ KY+ D + PA + ++++ +QA++ LGC G R+ Sbjct: 201 I---RIQPAGTFYDYEAKYL-SDETQYFCPAGLDASQEAALQSLVLQAWKALGCTGWGRI 256 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 DV L + + + E NT PG T+ S+ P + +G+ ++ L+ R++ELA Sbjct: 257 DVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 >ref|NP_520963.1| (NC_003295) PROBABLE D-ALANINE--D-ALANINE LIGASE B PROTEIN [Ralstonia solanacearum] emb|CAD16549.1| (AL646072) PROBABLE D-ALANINE--D-ALANINE LIGASE B PROTEIN [Ralstonia solanacearum] Length = 331 Score = 160 bits (406), Expect = 1e-38 Identities = 117/348 (33%), Positives = 173/348 (49%), Gaps = 50/348 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 +VG++ GG+SAE E+SL S ++ A+ +SR G+D Sbjct: 19 KVGVILGGRSAEREISLLSGNGVLAAL-RSR------GVD-------------------- 51 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 AH P +A + + H+++ + +HG GEDG++QG+L Sbjct: 52 AH-PFDPGTQPVAGLAAQGFHRVVIS---------------LHGRFGEDGTIQGLLEQFG 95 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ GS VLASA MDK+ TKRL + L F+ L + V +LGLPL V Sbjct: 96 IPYTGSGVLASALAMDKEATKRLWQTHSLPTPDFVML----HAGADWQAVADRLGLPLIV 151 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN-DNPQAST 243 KPA +GSS+G++KVTS + A + A D V+ EQ I G E+ CAV+G ++ A Sbjct: 152 KPAREGSSIGLTKVTSVAELPAAYEKAARLDRDVMAEQFIDGDELTCAVIGEGEHATALP 211 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 IV Y Y KY +D + PA I E +++A+ VQAY++LGC G R D+ Sbjct: 212 LIRIVAPQANYDYQHKYFTDD-TRYECPAPIPAEAAARVQALVVQAYRSLGCRGWGRADI 270 Query: 304 FLTPENEV-VINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 L + + E+NT PG T S+ P +A G+ Y D + +L A Sbjct: 271 MLRKHDGAPFLLEMNTSPGMTGHSLVPMAARAVGISYEDFVLQLAATA 318 >gb|AAB62175.1| (U94527) vancomycin resistance protein B [Enterococcus faecium] Length = 267 Score = 160 bits (404), Expect = 2e-38 Identities = 95/284 (33%), Positives = 153/284 (53%), Gaps = 23/284 (8%) Query: 35 RFDVVLLGIDKQGQWHVSDASNYLLNADD-PAHIALRPSATSLAQVPGKHEHQLIDAQNG 93 +FD +GI K G W + AD PA + P + H L+ + Sbjct: 1 KFDPHYIGITKNGVWKLCKKPCTEWEADSLPAIFS-----------PDRKTHGLLVMKER 49 Query: 94 Q-PLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAG 152 + +DV FP++HG GEDG++QG+ ++ +P+VG D+ +SAACMDK + L ++AG Sbjct: 50 EYETRRIDVAFPVLHGKCGEDGAIQGLFELSGIPYVGCDIQSSAACMDKSLAYILTKNAG 109 Query: 153 LNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAF 212 + + F + + ++ L P+FVKPA GSS GV+KV S E+ A++ A Sbjct: 110 IAVPEFQMIEKGDKPE------ARTLTYPVFVKPARSGSSFGVTKVNSTEELNAAIEAAG 163 Query: 213 EFDHKVIVEQGIKGREIECAVLGN-DNPQASTCGEIVLTSDFYAYDTKYIDEDG---AKV 268 ++D K+++EQ I G E+ CAV+GN D+ +I L+ + + E G A + Sbjct: 164 QYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMI 223 Query: 269 VVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVV 312 +VPA I E ++++ A + Y+ LGC G+ARVD+FL + +V Sbjct: 224 IVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFLQEDGGIV 267 >ref|NP_232962.1| (NC_002506) D-alanine--D-alanine ligase [Vibrio cholerae] pir||A82443 D-alanine--D-alanine ligase VCA0572 [imported] - Vibrio cholerae (group O1 strain N16961) gb|AAF96474.1| (AE004388) D-alanine--D-alanine ligase [Vibrio cholerae] Length = 334 Score = 159 bits (403), Expect = 3e-38 Identities = 113/359 (31%), Positives = 185/359 (51%), Gaps = 45/359 (12%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKS-RFDVVLLGIDKQGQWHVSDASNYL- 58 M K + ++ GG S+EHE+SL SA I ++ + F V+ + + K+G + A YL Sbjct: 1 MTKTTILLLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLD 60 Query: 59 -----LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGED 113 LN+D ++ +D + P +HG GE Sbjct: 61 TNSATLNSDKASY-------------------------------PIDFVVPCIHGFPGET 89 Query: 114 GSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNI--APFITLTRANRHNISF 171 G +Q ML +A +P++G ASA +K +T +L DA L+I P++ LT+ +I Sbjct: 90 GDIQSMLELAGIPYLGCGPEASANSFNK-ITSKLWYDA-LDIPNTPYLFLTQNTPSSIDK 147 Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 A+ +FVK A QGSSVG KVT+E+Q A A++ AF F +V+VEQ +K RE+E Sbjct: 148 AKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAIEAAFGFSEQVLVEQAVKPRELEV 207 Query: 232 AVLG-NDNPQASTCGEIVL-TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDK-IRAIAVQ 288 + N S GE++ FY+Y+ KY A+ V+ A E + + I+ A + Sbjct: 208 SAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHARTVLEAENLTEKHKELIQTYAER 267 Query: 289 AYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 + + ++R+D FLT E ++ +NE+NT PG T ISM+PK+ + +G +++ + + + Sbjct: 268 VFIHMKLRHLSRIDFFLTQEGQIYLNEVNTFPGMTPISMFPKMLEHNGHRFSEFLVQCV 326 >gb|AAK28428.1|AF251259_1 (AF251259) D-alanine-D-X ligase VanD4 [Enterococcus faecium] Length = 210 Score = 157 bits (398), Expect = 1e-37 Identities = 82/216 (37%), Positives = 133/216 (60%), Gaps = 10/216 (4%) Query: 112 EDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISF 171 EDG +QG+L ++ +P+VG D+ +S CMDK + ++++AG+ + F L + + Sbjct: 1 EDGCIQGLLELSGIPYVGCDIQSSVICMDKSLAYMVVKNAGIEVPGFRVLQKGDS----- 55 Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 E E+ L P+FVKPA GSS GV+KV E+ AV A ++D K++VE+ + G E+ C Sbjct: 56 LEAET-LSYPVFVKPARSGSSFGVNKVCRAEELQAAVTEAGKYDSKILVEEAVSGSEVGC 114 Query: 232 AVLGNDNPQAS-TCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAV 287 A+LGN N + +I L F+ + E G++ + VPAA+ E+ ++I+ A Sbjct: 115 AILGNGNDLITGEVDQIELKHGFFKIHQEAQPEKGSENAVIRVPAALPDEVREQIQETAK 174 Query: 288 QAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFT 323 + Y+ LGC G+AR+D+FL + +V+NE+NT+PGFT Sbjct: 175 KIYRVLGCRGLARIDLFLREDGSIVLNEVNTMPGFT 210 >gb|AAB62174.1| (U94526) vancomycin resistance protein B [Enterococcus faecium] Length = 267 Score = 157 bits (397), Expect = 2e-37 Identities = 94/284 (33%), Positives = 152/284 (53%), Gaps = 23/284 (8%) Query: 35 RFDVVLLGIDKQGQWHVSDASNYLLNADD-PAHIALRPSATSLAQVPGKHEHQLIDAQNG 93 +FD +GI K G W + AD PA ++ P + H L+ + Sbjct: 1 KFDPHYIGITKNGVWKLCKKPCTEWEADSLPAILS-----------PDRKTHGLLVMKES 49 Query: 94 Q-PLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAG 152 + +DV FP++HG GEDG++QG+ ++ +P+VG D+ +SAACMDK + L ++AG Sbjct: 50 EYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAG 109 Query: 153 LNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAF 212 + + F + + ++ L P+FVKPA GSS GV+KV E+ A++ A Sbjct: 110 IAVPEFQMIDKGDKPE------AGALTYPVFVKPARSGSSFGVTKVNGTEELNAAIEAAG 163 Query: 213 EFDHKVIVEQGIKGREIECAVLGN-DNPQASTCGEIVLTSDFYAYDTKYIDEDG---AKV 268 ++D K+++EQ I G E+ CAV+GN D+ +I L+ + + E G A + Sbjct: 164 QYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMI 223 Query: 269 VVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVV 312 VPA I E ++++ A + Y+ LGC G+ARVD+FL + +V Sbjct: 224 TVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFLQEDGGIV 267 >ref|NP_404198.1| (NC_003143) D-alanine--D-alanine ligase B [Yersinia pestis] emb|CAC89413.1| (AJ414143) D-alanine--D-alanine ligase B [Yersinia pestis] Length = 306 Score = 157 bits (397), Expect = 2e-37 Identities = 115/349 (32%), Positives = 176/349 (49%), Gaps = 50/349 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 +V ++ GG SAE EVSL S + ++ + ++ D G+D + D P Sbjct: 4 KVAVLLGGTSAEREVSLLSGQAVLAGLKEAGIDA--YGVDTK---------------DFP 46 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 T L + D +F +HG GEDG+LQG+L Sbjct: 47 --------VTQLKE------------------QGFDKVFIALHGRGGEDGTLQGVLEFLQ 80 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV---ESKLGLP 181 LP+ GS V+ASA MDK TK + + GL I+P++ L R +S E+ +KLGLP Sbjct: 81 LPYTGSGVMASALTMDKLRTKLVWQALGLPISPYVALNRQQFETLSPEELVACVAKLGLP 140 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 L VKP+++GSSVG+SKV + A+ AF+ D V++E+ + G E A+LG+ + Sbjct: 141 LIVKPSHEGSSVGMSKVDHASELQKALVEAFQHDSDVLIEKWLSGPEFTVAILGD---EV 197 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 I FY YD KY+ D + P+ ++ E ++ A+A+QAY L C+G RV Sbjct: 198 LPSIRIQPPGVFYDYDAKYL-SDKTQYFCPSGLSDESEQQLAALALQAYHALDCSGWGRV 256 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 DV + + E+NT PG T+ S+ P + GL ++ L+ R++ LA Sbjct: 257 DVMQDRDGHFYLLEVNTSPGMTSHSLVPMAARQYGLSFSQLVARILMLA 305 >gb|AAB62176.1| (U94528) vancomycin resistance protein B [Enterococcus faecium] gb|AAB62177.1| (U94529) vancomycin resistance protein B [Enterococcus faecium] gb|AAB62178.1| (U94530) vancomycin resistance protein B [Enterococcus faecium] Length = 267 Score = 157 bits (397), Expect = 2e-37 Identities = 94/284 (33%), Positives = 152/284 (53%), Gaps = 23/284 (8%) Query: 35 RFDVVLLGIDKQGQWHVSDASNYLLNADD-PAHIALRPSATSLAQVPGKHEHQLIDAQNG 93 +FD +GI K G W + AD PA ++ P + H L+ + Sbjct: 1 KFDPHYIGITKNGVWKLCKKPCTEWEADSLPAILS-----------PDRKTHGLLVMKES 49 Query: 94 Q-PLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAG 152 + +DV FP++HG GEDG++QG+ ++ +P+VG D+ +SAACMDK + L ++AG Sbjct: 50 EYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAG 109 Query: 153 LNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAF 212 + + F + + ++ L P+FVKPA GSS GV+KV E+ A++ A Sbjct: 110 IAVPEFQIIDKGDKPE------AGALTYPVFVKPARSGSSFGVTKVNGTEELNAAIEAAG 163 Query: 213 EFDHKVIVEQGIKGREIECAVLGN-DNPQASTCGEIVLTSDFYAYDTKYIDEDG---AKV 268 ++D K+++EQ I G E+ CAV+GN D+ +I L+ + + E G A + Sbjct: 164 QYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMI 223 Query: 269 VVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVV 312 VPA I E ++++ A + Y+ LGC G+ARVD+FL + +V Sbjct: 224 TVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFLQEDGGIV 267 >ref|NP_296522.1| (NC_002620) UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase [Chlamydia muridarum] pir||B81737 UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase TC0143 [imported] - Chlamydia muridarum (strain Nigg) gb|AAF39021.1| (AE002281) UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase [Chlamydia muridarum] Length = 833 Score = 157 bits (396), Expect = 2e-37 Identities = 104/360 (28%), Positives = 175/360 (47%), Gaps = 30/360 (8%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +KL +G++ GG+S EH++S+ SA+NI + S ++V I ++G W Sbjct: 476 KKLSLGLICGGRSCEHDISILSAQNIAKYLSHSFYEVQYFLITREGLWKTG--------- 526 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 S+ L++ GK + D + L VDVI PI+HG GEDG++QG L Sbjct: 527 ----------SSLELSEETGK---TIFDPEIAGKLSKVDVILPILHGPYGEDGAMQGFLE 573 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRHNISFAEVESKL 178 P+ G ++ +A M+K +TKR + D G+ + P++ LT A++++ Sbjct: 574 TIGKPYTGPSLVFAAIGMNKVLTKRFMSDLGIPVVPYLPLTLKGWKQDQEKCLAQIKAAF 633 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGND 237 P+FVK + GSS+GV +V + A++ AF D V +E+ G REIE + LG+ Sbjct: 634 SFPMFVKSVHLGSSIGVFEVHDTNELRDAINEAFVRDDDVFIEESRLGCREIEVSFLGDG 693 Query: 238 NPQASTCG--EIVLTSDFYAYDTKY--IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 + G E F Y KY A++V ++ E +++ +A + Y+ L Sbjct: 694 SGVFFVAGMHERRGRGGFIDYQEKYGLSGRASAQIVFDVDLSKETREQLLGVAEKIYRLL 753 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G R+D F+ E ++EIN +PG T S + + G ++ +L+ L+R Sbjct: 754 QGKGSCRIDFFVDNEGSFWLSEINPIPGMTTASPFLAAFVRKGWNREQIVHQLVIDGLQR 813 >gb|AAC16915.1| (U91914) D-alanine:D-alanine ligase [Streptococcus constellatus] Length = 197 Score = 157 bits (396), Expect = 2e-37 Identities = 76/197 (38%), Positives = 126/197 (63%), Gaps = 1/197 (0%) Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L V +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE+ L Sbjct: 2 LEVLKMPYVGCNILSSSVAMDKITTKRVLASAGIPQVPYVAVIEGENIDEKIAEVEANLT 61 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+F KP+N GSSVG+SK ++++ A++LAF++D +V++EQG+ REIE +LGN+ Sbjct: 62 YPVFTKPSNMGSSVGISKSENQDELRSALELAFKYDSRVLIEQGVNAREIEVGLLGNEGA 121 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 ++S GE+V FY Y+ KYID + + +PA ++ ++ +R A +A+ +G G+A Sbjct: 122 KSSWPGEVVKDVAFYDYEAKYID-NKITMDIPAKLSEDVIVTMRQYAEKAFHAIGGVGLA 180 Query: 300 RVDVFLTPENEVVINEI 316 R D F T + E+ +NE+ Sbjct: 181 RCDFFYTDKGEIFLNEL 197 >sp|Q9PLG1|MUDD_CHLMU MURC/DDL BIFUNCTIONAL ENZYME [INCLUDES: UDP-N-ACETYLMURAMATE--ALANINE LIGASE (UDP-N-ACETYLMURAMOYL-L-ALANINE SYNTHETASE); D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE)] Length = 802 Score = 157 bits (396), Expect = 2e-37 Identities = 104/360 (28%), Positives = 175/360 (47%), Gaps = 30/360 (8%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +KL +G++ GG+S EH++S+ SA+NI + S ++V I ++G W Sbjct: 445 KKLSLGLICGGRSCEHDISILSAQNIAKYLSHSFYEVQYFLITREGLWKTG--------- 495 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 S+ L++ GK + D + L VDVI PI+HG GEDG++QG L Sbjct: 496 ----------SSLELSEETGK---TIFDPEIAGKLSKVDVILPILHGPYGEDGAMQGFLE 542 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRHNISFAEVESKL 178 P+ G ++ +A M+K +TKR + D G+ + P++ LT A++++ Sbjct: 543 TIGKPYTGPSLVFAAIGMNKVLTKRFMSDLGIPVVPYLPLTLKGWKQDQEKCLAQIKAAF 602 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGND 237 P+FVK + GSS+GV +V + A++ AF D V +E+ G REIE + LG+ Sbjct: 603 SFPMFVKSVHLGSSIGVFEVHDTNELRDAINEAFVRDDDVFIEESRLGCREIEVSFLGDG 662 Query: 238 NPQASTCG--EIVLTSDFYAYDTKY--IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 + G E F Y KY A++V ++ E +++ +A + Y+ L Sbjct: 663 SGVFFVAGMHERRGRGGFIDYQEKYGLSGRASAQIVFDVDLSKETREQLLGVAEKIYRLL 722 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G R+D F+ E ++EIN +PG T S + + G ++ +L+ L+R Sbjct: 723 QGKGSCRIDFFVDNEGSFWLSEINPIPGMTTASPFLAAFVRKGWNREQIVHQLVIDGLQR 782 >gb|AAB41851.1| (U69162) D-Alanine:D-Alanine ligase [Streptococcus bovis] Length = 197 Score = 156 bits (395), Expect = 2e-37 Identities = 78/197 (39%), Positives = 121/197 (60%), Gaps = 1/197 (0%) Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L + +P+VG+++L+S+ MDK TK +L AG+ + ++T + AEV KL Sbjct: 2 LEILKMPYVGTNILSSSVAMDKISTKHVLESAGVPLVAYVTYVEGADLEKAVAEVNEKLT 61 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+F+KPAN GSSVG+SK EE A+DLA ++D ++++E G+ REIE +LGN + Sbjct: 62 YPVFIKPANMGSSVGISKADDEEGLRSAIDLALKYDSRILIETGVNAREIEVGILGNADV 121 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 Q + GE+V FY YD KYID + + +PA I I +++R A A++ +G G++ Sbjct: 122 QTTLPGEVVKDVAFYDYDAKYID-NKITMDIPAHIDSNIMEEMRGYATTAFRAIGGCGLS 180 Query: 300 RVDVFLTPENEVVINEI 316 R D FLT + V +NE+ Sbjct: 181 RCDFFLTEDGHVYLNEL 197 >gb|AAA60989.1| (L29641) D-alanine-D-alanine ligase-related enzyme [Enterococcus casseliflavus] Length = 200 Score = 156 bits (395), Expect = 2e-37 Identities = 87/200 (43%), Positives = 126/200 (62%), Gaps = 4/200 (2%) Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFI-TLTRANRHNIS--FAEVES 176 L +P+VG+ VL SA MDK +TK +L+ AG+ P++ L A + N F + E Sbjct: 2 LETIGMPYVGAGVLTSACGMDKIMTKYILQAAGIPQVPYVPVLKNAWKENPKKIFDQCEG 61 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN 236 L P+FVKPAN GSSVG+SK + E+ A+ A+ +D + IVEQGI+ REIE AVLGN Sbjct: 62 SLLYPMFVKPANMGSSVGISKAENREELQNALQEAYRYDTRAIVEQGIEAREIEVAVLGN 121 Query: 237 DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 ++ + + GEIV FY Y++KYID + ++ +PA I E K + A +AY LG + Sbjct: 122 EDVRTTMPGEIVKDVAFYDYNSKYID-NRIEMQIPAQIPEETQAKAQEFAKKAYTMLGGS 180 Query: 297 GMARVDVFLTPENEVVINEI 316 G++R D FLT +NE+ +NE+ Sbjct: 181 GLSRCDFFLTNKNELFLNEL 200 >gb|AAA87681.1| (U08911) putative D-alanine:D-alanine ligase [Lactobacillus leichmannii] Length = 206 Score = 156 bits (395), Expect = 3e-37 Identities = 87/206 (42%), Positives = 130/206 (62%), Gaps = 8/206 (3%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR-----ANRHNISFAE 173 + R+ + PFVG DVLA+ MDK+ TK L + AG+ +A ++++ R A +S+ Sbjct: 1 LFRLIDKPFVGVDVLAARVTMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDW 60 Query: 174 VESKLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECA 232 V +LG LFVKP+NQGSSVG++ VT + YA A+ AF++D KV+VE+GI G E+E A Sbjct: 61 VSGQLGTTNLFVKPSNQGSSVGITHVTDDSNYAEALAEAFKYDDKVLVEEGIVGTEVETA 120 Query: 233 VLGNDNPQASTCGEIVLTSD-FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 VLGND+P S G I+ + +Y+Y+ KY E + +PA I E +K++ A++ YQ Sbjct: 121 VLGNDHPVVSGVGRIINADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKIYQ 180 Query: 292 TLGCAGMARVDVFL-TPENEVVINEI 316 C+GMAR+D L + EV+ NE+ Sbjct: 181 ITECSGMARIDSMLRESDGEVIFNEL 206 >gb|AAB41853.1| (U69164) D-Alanine:D-Alanine ligase [Streptococcus mitis] Length = 197 Score = 156 bits (394), Expect = 3e-37 Identities = 78/197 (39%), Positives = 124/197 (62%), Gaps = 1/197 (0%) Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L V +P+VG ++L+S+ MDK TKR+L G+ P++ + + AEVE KL Sbjct: 2 LEVLKMPYVGCNILSSSLAMDKITTKRVLESVGIAQVPYVAIVEGDDMTAKIAEVEEKLT 61 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+F KP+N GSSVG+SK ++E+ A+ LAF++D +V+VEQG+ REIE +LGN + Sbjct: 62 YPVFTKPSNMGSSVGISKSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDV 121 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ +G G++ Sbjct: 122 KSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLS 180 Query: 300 RVDVFLTPENEVVINEI 316 R D F T + E+ +NE+ Sbjct: 181 RCDFFYTDKGEIFLNEL 197 >gb|AAB41855.1| (U69166) D-Alanine:D-Alanine ligase [Streptococcus oralis] Length = 197 Score = 156 bits (394), Expect = 3e-37 Identities = 78/197 (39%), Positives = 125/197 (62%), Gaps = 1/197 (0%) Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L V +P+VG ++L+S+ MDK TKR+L G+ P++ + + AEVE KL Sbjct: 2 LEVLKMPYVGCNILSSSLAMDKITTKRVLESVGIAQVPYVAIVEGDDVTAKIAEVEEKLT 61 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+F KP+N GSSVG+SK ++E+ A++LAF++D +V+VEQG+ REIE +LGN + Sbjct: 62 YPVFTKPSNMGSSVGISKSENQEELRQALELAFQYDSRVLVEQGVNAREIEVGLLGNYDV 121 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ +G G++ Sbjct: 122 KSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRHNAETAFRAIGGLGLS 180 Query: 300 RVDVFLTPENEVVINEI 316 R D F T + E+ +NE+ Sbjct: 181 RCDFFYTDKGEIFLNEL 197 >sp|P95803|DDL_STRMU PUTATIVE D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAB41854.1| (U69165) D-Alanine:D-Alanine ligase [Streptococcus mutans] Length = 198 Score = 156 bits (394), Expect = 3e-37 Identities = 82/198 (41%), Positives = 122/198 (61%), Gaps = 2/198 (1%) Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDA-GLNIAPFITLTRANRHNISFAEVESKL 178 L V +P+VG+++L+S+ MDK TK++L A + ++ L AEVE KL Sbjct: 2 LEVLKMPYVGTNILSSSVAMDKITTKQVLESATTIPQVAYVALIEGEPLESKLAEVEEKL 61 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 P+FVKPAN GSSVG+SK + A+ LA ++D +V++EQG+ REIE +LGN + Sbjct: 62 IYPVFVKPANMGSSVGISKAENRTDLKQAIALALKYDSRVLIEQGVDAREIEVGILGNTD 121 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 + + GEIV FY Y+ KYID + + +PA I P I +K+R A++TLGC G+ Sbjct: 122 VKTTLPGEIVKVVAFYDYEAKYID-NKITMAIPAEIDPVIVEKMRDYRATAFRTLGCCGL 180 Query: 299 ARVDVFLTPENEVVINEI 316 +R D FLT + +V +NE+ Sbjct: 181 SRCDFFLTEDGKVYLNEL 198 >ref|NP_386277.1| (NC_003047) PROBABLE D-ALANINE--D-ALANINE LIGASE B PROTEIN [Sinorhizobium meliloti] emb|CAC46750.1| (AL591789) PROBABLE D-ALANINE--D-ALANINE LIGASE B PROTEIN [Sinorhizobium meliloti] Length = 308 Score = 155 bits (393), Expect = 5e-37 Identities = 111/355 (31%), Positives = 175/355 (49%), Gaps = 60/355 (16%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M V ++ GG S+E VSL S DA++ + V + + + D + L Sbjct: 1 MSSKHVAVLLGGFSSERPVSLSSGTACADALEAEGYRVTRVDVGR-------DVAAVLQE 53 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 LRP DV+F +HG GEDG++QG+L Sbjct: 54 --------LRP----------------------------DVVFNALHGPFGEDGTIQGIL 77 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 +P+ S VLASA MDKD K + + AG+ +A + + R + N + + Sbjct: 78 EYLEIPYTHSGVLASALAMDKDQAKHVAKAAGIPVAEALVMDRRSFGN------QHPMKP 131 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDN 238 P VKP +GSS GV V ++ + V + E+ + +V+VE+ I GRE C V+G+ Sbjct: 132 PYVVKPVREGSSFGVVIVKEDQSHPPQVITSSEWRYGDRVMVERYIAGREFTCGVMGD-- 189 Query: 239 PQASTCGEIVLTSD-FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 A EI+ FY YD+KY+ + G+K V+PA I+P I KI+ +A++A+Q +GC G Sbjct: 190 -VALGVTEIIPQGHAFYDYDSKYV-KGGSKHVIPAQISPNIYQKIQTLALKAHQAIGCRG 247 Query: 298 MARVDVFLTP----ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 ++R D E E++ EINT PG T S+ P++ Q +GL + + + ++E Sbjct: 248 VSRSDFRFDDRGDGEGELIWLEINTQPGMTPTSLVPEMAQHAGLQFGEFLRWMVE 302 >gb|AAA60988.1| (L29640) D-alanine-D-alanine ligase-related enzyme [Enterococcus flavescens] Length = 200 Score = 155 bits (392), Expect = 6e-37 Identities = 86/200 (43%), Positives = 126/200 (63%), Gaps = 4/200 (2%) Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFI-TLTRANRHNIS--FAEVES 176 L +P+VG+ VL SA MDK +TK +L+ AG+ P++ L A + N F + E Sbjct: 2 LETIGMPYVGAGVLTSACGMDKIMTKYILQAAGIPQVPYVPVLKNAWKENPKKIFDQCEG 61 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN 236 L P+FVKPAN GSSVG+SK + ++ A+ A+ +D + IVEQGI+ REIE AVLGN Sbjct: 62 SLLYPMFVKPANMGSSVGISKAENRQELQNALQEAYRYDTRAIVEQGIEAREIEVAVLGN 121 Query: 237 DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 ++ + + GEIV FY Y++KYID + ++ +PA I E K + A +AY LG + Sbjct: 122 EDVRTTMPGEIVKDVAFYDYNSKYID-NRIEMQIPAQIPEETQAKAQEFAKKAYTMLGGS 180 Query: 297 GMARVDVFLTPENEVVINEI 316 G++R D FLT +NE+ +NE+ Sbjct: 181 GLSRCDFFLTNKNELFLNEL 200 >gb|AAF37349.1|AF170810_1 (AF170810) D-alanine:D-alanine ligase [Enterococcus sulfureus] Length = 200 Score = 154 bits (390), Expect = 9e-37 Identities = 81/201 (40%), Positives = 131/201 (64%), Gaps = 6/201 (2%) Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT----RANRHNISFAEVE 175 L V ++P++G+ V+ SA MDK +TK +L+ AG+ P++ + + N + F + E Sbjct: 2 LEVLDMPYIGAGVVTSACDMDKIMTKYILQAAGIPQVPYMPVLEHQWKENPKQV-FEQCE 60 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 L P+FVKPAN GSSVG+SK + + A+ A+++D +V++EQGI+ REIE AVLG Sbjct: 61 GSLLYPMFVKPANMGSSVGISKAENRLELQAALAEAYKYDSRVVIEQGIEAREIEVAVLG 120 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 N++ + + GEIV FY Y++KYID + ++ +PA ++ E+ K + A +AY LG Sbjct: 121 NEDVRTTAAGEIVKDVAFYDYNSKYIDNN-IEMQIPAQVSDEVQQKAQEYAKKAYIMLGG 179 Query: 296 AGMARVDVFLTPENEVVINEI 316 +G++R D FLT +NE+ +NE+ Sbjct: 180 SGLSRCDFFLTSKNELFLNEL 200 >gb|AAB17901.1| (U39777) D-alanine:D-alanine ligase [Enterococcus saccharolyticus] Length = 200 Score = 154 bits (390), Expect = 1e-36 Identities = 81/201 (40%), Positives = 127/201 (62%), Gaps = 6/201 (2%) Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT----RANRHNISFAEVE 175 L +P+VG+ VL SA MDK +TK +L AG+ P++ + + N I F + E Sbjct: 2 LETIRMPYVGAGVLTSACGMDKIMTKYILHSAGIPQVPYVPVLKNQWKENPKQI-FEQCE 60 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 L P+FVKPAN GSSVG+SK + + A++ A+++D++ ++EQGI+ REIE A+LG Sbjct: 61 GSLRYPMFVKPANMGSSVGISKAENRVELQNALEEAYKYDNRAVIEQGIEAREIEVAILG 120 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 N++ + + GEIV FY Y++KYID + + +PA + E+ +K + A AY LG Sbjct: 121 NEDVRTTMAGEIVKDVAFYDYNSKYID-NSIVMQIPAQVPDEVQEKAQEYAKLAYTMLGG 179 Query: 296 AGMARVDVFLTPENEVVINEI 316 +G++R D FLT +NE+ +NE+ Sbjct: 180 SGLSRCDFFLTNKNELFLNEL 200 >gb|AAB17900.1| (U39775) D-alanine:D-alanine ligase [Enterococcus pseudoavium] Length = 200 Score = 154 bits (389), Expect = 1e-36 Identities = 81/200 (40%), Positives = 125/200 (62%), Gaps = 4/200 (2%) Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN-RHNIS--FAEVES 176 L ++P+VG+ V+ SA MDK +TK +L+ AG+ P++ + + + N F + E Sbjct: 2 LETLDMPYVGAGVMTSACAMDKIMTKYILQAAGIPQVPYVPVLKNQWKENPKQVFDKCEG 61 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN 236 L P+F+KPAN GSSVG+S+ + E+ A+ A+ +D + +VEQGI REIE AVLGN Sbjct: 62 TLLYPMFIKPANMGSSVGISRAENREELQNALKEAYRYDSRALVEQGIDAREIEVAVLGN 121 Query: 237 DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 D+ + + GE+V FY Y+ KYID + ++ +PA + E+ K R A AY LG + Sbjct: 122 DDVRTTLPGEVVKEVAFYDYNAKYID-NTIQMAIPAEVPKEVMQKAREYAKLAYTMLGGS 180 Query: 297 GMARVDVFLTPENEVVINEI 316 G++R D FLT +NE+ +NE+ Sbjct: 181 GLSRCDFFLTNKNELFLNEL 200 >gb|AAF37343.1|AF170804_1 (AF170804) D-alanine:D-alanine ligase [Enterococcus durans] Length = 200 Score = 154 bits (389), Expect = 1e-36 Identities = 83/200 (41%), Positives = 125/200 (62%), Gaps = 4/200 (2%) Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN-RHNIS--FAEVES 176 L NLP+VG+ VL SA MDK +TK +L+ G+ P++ + + + N F + E Sbjct: 2 LETLNLPYVGAGVLTSACAMDKIMTKYILQAGGVPQVPYVPVLKNQWKENPKKVFDQCEG 61 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN 236 L P+FVKPAN GS VG+SK + E+ A+ A+++D + IVEQGI+ REIE AVLGN Sbjct: 62 SLLYPMFVKPANMGSGVGISKAENREELQNALRTAYQYDSRAIVEQGIEAREIEVAVLGN 121 Query: 237 DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 ++ + + GE+V FY YD KYI+ + ++ +PA + E+ K + A AY LG + Sbjct: 122 EDVRTTLPGEVVKDVAFYDYDAKYIN-NKIEMQIPAEVPEEVYQKAQEYAKLAYTMLGGS 180 Query: 297 GMARVDVFLTPENEVVINEI 316 G++R D FLT +NE+ +NE+ Sbjct: 181 GLSRCDFFLTNKNELFLNEL 200 >gb|AAA87682.1| (U08912) putative D-alanine:D-alanine ligase [Lactobacillus plantarum] Length = 201 Score = 154 bits (389), Expect = 1e-36 Identities = 75/201 (37%), Positives = 128/201 (63%), Gaps = 3/201 (1%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 + ++ P+VGS VLASAA DKD+TK++L + ++ +T NR +++A +++ + Sbjct: 1 LFKLLKKPYVGSGVLASAASFDKDITKQILTHHHIQNTKYVVVTPENRDQMTYAYLQAHV 60 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGND 237 G L +KPANQGSS+G+ K +E++Y + AF++D+K++VE+ I RE+EC++LGN+ Sbjct: 61 GDHLSIKPANQGSSIGIHKAENEQEYLDGLADAFKYDYKILVEESIDNPREVECSILGNE 120 Query: 238 NPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 NP+AS G I + T FY Y+ ++D G +P + ++ +I+ + V A++ LG Sbjct: 121 NPKASKLGAIDVPKTDTFYDYNNMFVDASGVTFELPVELPADLTKRIQQMCVDAFRALGL 180 Query: 296 AGMARVDVFLTPENEVVINEI 316 GMARVD ++ + E + EI Sbjct: 181 KGMARVDFLVSEDGEPYLGEI 201 >gb|AAA24785.1| (L15304) vanB2 ORF [Enterococcus faecalis] Length = 210 Score = 154 bits (388), Expect = 1e-36 Identities = 82/216 (37%), Positives = 129/216 (58%), Gaps = 10/216 (4%) Query: 112 EDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISF 171 EDG +QG+ ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ Sbjct: 1 EDGCIQGLFELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPE--- 57 Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 L P+FVKPA GSS GV+KV E+ A++ A ++D K+++EQ I G E+ C Sbjct: 58 ---AGALTYPVFVKPARSGSSFGVTKVNGTEELNAAIEAAGQYDGKILIEQAISGCEVGC 114 Query: 232 AVLGN-DNPQASTCGEIVLTSDFYAYDTKYIDEDG---AKVVVPAAIAPEINDKIRAIAV 287 AV+GN D+ +I L+ + + E G A + VPA I E ++++ A Sbjct: 115 AVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQETAK 174 Query: 288 QAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFT 323 + Y+ LGC G+ARVD+FL + +V+NE+NTLPGFT Sbjct: 175 KVYRVLGCRGLARVDLFLQEDGGIVLNEVNTLPGFT 210 >gb|AAB49636.1| (U72704) vancomycin resistance protein [Enterococcus faecalis] Length = 261 Score = 154 bits (388), Expect = 2e-36 Identities = 91/277 (32%), Positives = 149/277 (52%), Gaps = 23/277 (8%) Query: 35 RFDVVLLGIDKQGQWHVSDASNYLLNADD-PAHIALRPSATSLAQVPGKHEHQLIDAQNG 93 +FD +GI K+G W + AD PA ++ P + H L+ + Sbjct: 2 KFDPHYIGITKRGVWKLCKKPCTEWEADSLPAILS-----------PDRKTHGLLVMKES 50 Query: 94 Q-PLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAG 152 + +DV FP++HG GEDG++QG+ ++ +P+VG D+ +SAACMDK + L ++AG Sbjct: 51 EYETRRIDVAFPVLHGKCGEDGAIQGLFELSGIPYVGCDIQSSAACMDKSLAYILTKNAG 110 Query: 153 LNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAF 212 + + F + + ++ L P+FVKPA GSS G++KV E+ A++ A Sbjct: 111 IAVPEFQMIDKGDKPET------GALTYPVFVKPARSGSSFGLTKVNGTEELNAAIEAAG 164 Query: 213 EFDHKVIVEQGIKGREIECAVLGN-DNPQASTCGEIVLTSDFYAYDTKYIDEDG---AKV 268 ++D K+++EQ I G E+ CAV+GN D+ +I L+ + + E G A + Sbjct: 165 QYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMI 224 Query: 269 VVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFL 305 VPA I ++++ A + Y+ LGC G+ARVD+FL Sbjct: 225 TVPADIPVGERNRVQETAKKVYRALGCRGLARVDLFL 261 >gb|AAB41852.1| (U69163) D-Alanine:D-Alanine ligase [Streptococcus gordonii] Length = 197 Score = 153 bits (387), Expect = 2e-36 Identities = 76/197 (38%), Positives = 122/197 (61%), Gaps = 1/197 (0%) Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L V +P+VG ++L+S+ MDK TKR+L AG+ P++ + E+E KL Sbjct: 2 LEVLKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAVVDGEDLEQKIQEIEEKLS 61 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+F KP+N GSSVG+SK ++E+ ++DLAF++D +V+VEQG+ REIE +LGN + Sbjct: 62 YPVFTKPSNMGSSVGISKSDNQEELRASLDLAFKYDSRVLVEQGVTAREIEVGLLGNTDV 121 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 ++S GE+V FY Y KYID + + +PA + + + +R A A++ +G G++ Sbjct: 122 KSSLPGEVVKDVAFYDYQAKYID-NKITMAIPAQLPEGVVNTMRQNAETAFRAIGGLGLS 180 Query: 300 RVDVFLTPENEVVINEI 316 R D F T + +V +NE+ Sbjct: 181 RCDFFYTEDGQVFLNEL 197 >gb|AAB62519.1| (U91912) D-alanine:D-alanine ligase [Streptococcus anginosus] Length = 197 Score = 153 bits (387), Expect = 2e-36 Identities = 74/197 (37%), Positives = 124/197 (62%), Gaps = 1/197 (0%) Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L V +P+VG ++L+S+ MDK TKR+L AG+ P++ + + A VE+ L Sbjct: 2 LEVLKMPYVGCNILSSSVAMDKITTKRVLASAGIPQVPYVAVIEGENIDEKIAAVEANLT 61 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+F KP+N GSSVG+SK ++++ A++LAF++D +V++EQG+ REIE +LGN+ Sbjct: 62 YPVFTKPSNMGSSVGISKSENQDELRSALELAFKYDSRVLIEQGVNAREIEVGLLGNEGA 121 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 ++S GE+V FY Y+ KYID + + +PA ++ ++ +R A + + +G G+A Sbjct: 122 KSSLPGEVVKDVAFYDYEAKYID-NKITIDIPAKLSEDVIATMRQYAEKRFHAIGGVGLA 180 Query: 300 RVDVFLTPENEVVINEI 316 R D F T + E+ +NE+ Sbjct: 181 RCDFFYTDKGEIFLNEL 197 >ref|NP_242487.1| (NC_002570) D-alanyl-D-alanine ligase A [Bacillus halodurans] dbj|BAB05340.1| (AP001512) D-alanyl-D-alanine ligase A [Bacillus halodurans] Length = 305 Score = 152 bits (384), Expect = 4e-36 Identities = 110/357 (30%), Positives = 177/357 (48%), Gaps = 59/357 (16%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ +++GG SAE EVSL S K I++A+ + +V+ GID +H + + D Sbjct: 1 MKIAVLYGGTSAEREVSLSSGKGIMEALKANGHEVI--GID----FHPDQVRDLVDLDVD 54 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 I L HG LGEDG +Q +L + Sbjct: 55 LVFIGL-------------------------------------HGRLGEDGKVQALLDLL 77 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR----ANRHNISFAEVESKLG 179 N+P+VG+ V SA MDK K AG+ +A + L AN N + Sbjct: 78 NIPYVGTGVQGSALAMDKAKAKLFFEKAGIRVAEEVVLHSFTYDANAFNFTGT------- 130 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+ VKP +GS++G++ +EE+ ++ AF D +++E+ I G E+ AVLGN Sbjct: 131 YPVVVKPNQEGSTIGLTVAETEEELLQGIEEAFRHDDTILIEEFIAGTEVTVAVLGNKGE 190 Query: 240 QAS-TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 + S EIV + Y Y++KY ++ +VPA I+ E ++ AV+A+Q LGC Sbjct: 191 ERSLPVVEIVPKNKLYDYESKYA-PGMSEHIVPARISEEHTAYVQQAAVRAHQALGCDVY 249 Query: 299 ARVDVFLTPEN--EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 +RVD F+ P + + VI ++NTLPG T S+YP + G+ Y ++I + L+L++ Sbjct: 250 SRVD-FIVPNDGSDPVILKVNTLPGMTPTSLYPDAAKGVGMSYEEMIQTFVNLSLKK 305 >gb|AAB41856.1| (U69167) D-Alanine:D-Alanine ligase [Streptococcus salivarius] Length = 197 Score = 151 bits (382), Expect = 7e-36 Identities = 77/197 (39%), Positives = 118/197 (59%), Gaps = 1/197 (0%) Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L LP+VG++VL+S+ MDK +TK +L AG+ + + AE KL Sbjct: 2 LETLKLPYVGTNVLSSSVAMDKIMTKHILEVAGVPQVAYTVFIEGEDLEAAVAETLEKLT 61 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+FVKPAN GSSVG+SK +E + A+DLA ++D ++++EQG+ REIE +LGN Sbjct: 62 FPVFVKPANMGSSVGISKAENEAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTTV 121 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 + + GE+V FY Y KYID + + +PA + E+ ++R A +A++ LG G+A Sbjct: 122 KTTNPGEVVKDVAFYDYQAKYID-NKITMDIPAHVPAEVMTQMRVYAAKAFRALGGCGLA 180 Query: 300 RVDVFLTPENEVVINEI 316 R D FLT + + +NE+ Sbjct: 181 RCDFFLTEDGAIYLNEL 197 >ref|NP_225100.1| (NC_000922) Muramate-Ala Ligase & D-Ala-D-Ala Ligase [Chlamydophila pneumoniae CWL029] ref|NP_300962.1| (NC_002491) muramate-Ala ligase/D-Ala-D-Ala ligase [Chlamydophila pneumoniae J138] ref|NP_445498.1| (NC_002179) UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase [Chlamydophila pneumoniae AR39] sp|Q9Z701|MUDD_CHLPN MURC/DDL BIFUNCTIONAL ENZYME [INCLUDES: UDP-N-ACETYLMURAMATE--ALANINE LIGASE (UDP-N-ACETYLMURAMOYL-L-ALANINE SYNTHETASE); D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE)] pir||D72022 UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase CP0961 [imported] - Chlamydophila pneumoniae (strains CWL029 and AR39) gb|AAD19043.1| (AE001670) Muramate-Ala Ligase & D-Ala-D-Ala Ligase [Chlamydophila pneumoniae CWL029] gb|AAF38741.1| (AE002254) UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase [Chlamydophila pneumoniae AR39] dbj|BAA99113.1| (AP002548) muramate-Ala ligase/D-Ala-D-Ala ligase [Chlamydophila pneumoniae J138] Length = 809 Score = 151 bits (381), Expect = 1e-35 Identities = 104/363 (28%), Positives = 172/363 (46%), Gaps = 34/363 (9%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLL-- 59 +KL +G+V GGKS EH++SL SA+++ I +DV I++QG W +L+ Sbjct: 450 KKLSIGLVCGGKSCEHDISLLSAQHVSKYISPEFYDVSYFIINRQGLWRTGKDFPHLIEE 509 Query: 60 -NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118 D P + ++ L VD +FP++HG GEDG++QG Sbjct: 510 TQGDSP-----------------------LSSEIASALAKVDCLFPVLHGPFGEDGTIQG 546 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPF--ITLTRANRH-NISFAEVE 175 + P+ G + +A MDK +TKR+ G+ + P+ + L R+ + + Sbjct: 547 FFEILGKPYAGPSLSLAATAMDKLLTKRIASAVGVPVVPYQPLNLCFWKRNPELCIQNLI 606 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVL 234 P+ VK A+ GSS+G+ V +E+ + AF +D V VE+ G REIE + + Sbjct: 607 ETFSFPMIVKTAHLGSSIGIFLVRDKEELQEKISEAFLYDTDVFVEESRLGSREIEVSCI 666 Query: 235 GNDNPQASTCG--EIVLTSDFYAYDTKYIDE--DGAKVVVPAAIAPEINDKIRAIAVQAY 290 G+ + G E S F Y KY + D AK+ ++ E D +R +A + Y Sbjct: 667 GHSSSWYCMAGPNERCGASGFIDYQEKYGFDGIDCAKISFDLQLSQESLDCVRELAERVY 726 Query: 291 QTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + + G AR+D FL E ++E+N +PG T S + + + +G ++ I A Sbjct: 727 RAMQGKGSARIDFFLDEEGNYWLSEVNPIPGMTAASPFLQAFVHAGWTQEQIVDHFIIDA 786 Query: 351 LER 353 L + Sbjct: 787 LHK 789 >gb|AAF37347.1|AF170808_1 (AF170808) D-alanine:D-alanine ligase [Lactococcus garvieae] Length = 198 Score = 151 bits (381), Expect = 1e-35 Identities = 79/198 (39%), Positives = 122/198 (60%), Gaps = 2/198 (1%) Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L + L +VG L++++ MDK + + G+ P++ AEV+ KL Sbjct: 2 LEIMRLAYVGPKYLSASSTMDKLLANDVFTAVGVPQVPYVAAYADENQEKIHAEVQDKLT 61 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+FVKPAN GSSVG+SKV+S E+ + +A+++D++V++EQG+ REIECAVLGN Sbjct: 62 FPVFVKPANMGSSVGISKVSSLEELEAGLAVAYKYDNRVVIEQGVNAREIECAVLGNGGK 121 Query: 240 QASTC-GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 ST GE+V DFY Y +KYID + ++ +PA I E+ +K+R A +AYQ + AG+ Sbjct: 122 VRSTLPGEVVKDVDFYDYRSKYID-NKIEMAIPADIPAEVAEKMRHYAEKAYQAMNGAGL 180 Query: 299 ARVDVFLTPENEVVINEI 316 +R D F + ++ +NEI Sbjct: 181 SRCDFFYDQKGDIYLNEI 198 >gb|AAF37344.1|AF170805_1 (AF170805) D-alanine:D-alanine ligase [Enterococcus malodoratus] Length = 200 Score = 151 bits (381), Expect = 1e-35 Identities = 83/201 (41%), Positives = 124/201 (61%), Gaps = 6/201 (2%) Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT----RANRHNISFAEVE 175 L ++P VG+ V+ SA MDK +TK +L+ AG+ P++ + + N I F + E Sbjct: 2 LETLDMPDVGAGVVTSACAMDKIMTKYILQAAGIPQVPYVPVLKNQWKENPKQI-FDKCE 60 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 L P+F+KPAN GSSVG+S+ + E+ A+ A+ +D + +VEQGI REIE AVLG Sbjct: 61 GTLLYPMFIKPANMGSSVGISRAENREELQNALQEAYRYDSRALVEQGIDAREIEVAVLG 120 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 ND+ + + GE+V FY Y+ KYID + ++ +PA I E+ K R A AY LG Sbjct: 121 NDDVRTTLPGEVVKEVAFYDYNAKYID-NTIQMAIPAEIPEEVMQKARDYAKLAYTMLGG 179 Query: 296 AGMARVDVFLTPENEVVINEI 316 +G++R D FLT +NE+ +NE+ Sbjct: 180 SGLSRCDFFLTNKNELFLNEL 200 >gb|AAF37348.1| (AF170809) D-alanine:D-alanine ligase [Enterococcus solitarius] Length = 200 Score = 150 bits (380), Expect = 1e-35 Identities = 80/201 (39%), Positives = 125/201 (61%), Gaps = 6/201 (2%) Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA----NRHNISFAEVE 175 L ++P+VG+ V+ SA+ MDK +TK +L + P++ + ++ N I F + E Sbjct: 2 LETIDMPYVGAGVMTSASSMDKIMTKYILHAVDIPQVPYVPVLKSQWKENPKKI-FEQCE 60 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 L P+FVKPAN GSSVG++K ++ A+ A+ +D +V++EQ I+ REIE A+LG Sbjct: 61 GTLLYPMFVKPANMGSSVGMAKANDRKELQEALIEAYRYDSRVVIEQSIEAREIEVAILG 120 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 N++ + + GEIV FY Y++KYID + K+ +PA I E+ K R A AY +LG Sbjct: 121 NEDVRTTLPGEIVKEEAFYDYNSKYIDNN-IKMQIPAQIPEEVQQKAREYATIAYTSLGG 179 Query: 296 AGMARVDVFLTPENEVVINEI 316 G++R D FLT +NE+ +NE+ Sbjct: 180 RGLSRCDFFLTNKNELFLNEL 200 >gb|AAB17899.1| (U39778) D-alanine:D-alanine ligase [Enterococcus dispar] Length = 200 Score = 150 bits (380), Expect = 2e-35 Identities = 83/201 (41%), Positives = 127/201 (62%), Gaps = 6/201 (2%) Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFI----TLTRANRHNISFAEVE 175 L ++P++G+ VL SA MDK +TK +L+ AG+ P++ L + N I F + E Sbjct: 2 LETIDMPYIGAGVLTSACGMDKIMTKYILQAAGIPQVPYVPVLKNLWKENPKQI-FEQCE 60 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 L P+FVKPAN GSSVG+SK + E+ A+ A+++D + IVEQGI+ EIE A+LG Sbjct: 61 GTLLYPMFVKPANMGSSVGISKAENREELQNALQEAYKYDTRAIVEQGIERGEIEVAILG 120 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 N++ + + GEIV FY Y++KYID + + +PA I ++ K + A +AY LG Sbjct: 121 NEDVRTTLPGEIVKDVAFYDYNSKYID-NQIIMQIPAEIPEDVQQKAQDFAKKAYVMLGG 179 Query: 296 AGMARVDVFLTPENEVVINEI 316 +G++R D FLT +NE+ +NE+ Sbjct: 180 SGLSRCDFFLTNKNELFLNEL 200 >emb|CAA55651.1| (X79049) vanA2 [Oerskovia turbata] Length = 261 Score = 150 bits (380), Expect = 2e-35 Identities = 88/243 (36%), Positives = 136/243 (55%), Gaps = 15/243 (6%) Query: 80 PGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAAC 138 P K H L+ +N + + VDV F +HG GEDGS+QG+ ++ +PFVG D+ +SA C Sbjct: 27 PDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAIC 86 Query: 139 MDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKV 198 MDK +T + ++AG+ F + + +R V + P+F KPA GSS GV KV Sbjct: 87 MDKSLTYIVAKNAGIATPAFWVINKDDR------PVAATSTYPVFGKPARSGSSFGVKKV 140 Query: 199 TSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTCGE---IVLTSDFYA 255 S ++ A++ A ++D K+++EQ + G E+ CAVLGN A GE I L + Sbjct: 141 NSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNS--AALVVGEVDQIRLQYGIFR 198 Query: 256 YDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVV 312 + E G++ + VPA ++ E +I+ + Y+ LGC G+ARVD+FL +V Sbjct: 199 IHQEVEPEKGSENAVITVPADLSAEERGRIQETGKKIYKALGCRGLARVDMFLQDNGRIV 258 Query: 313 INE 315 +NE Sbjct: 259 LNE 261 >gb|AAF37342.1|AF170803_1 (AF170803) D-alanine:D-alanine ligase [Enterococcus columbae] Length = 199 Score = 149 bits (377), Expect = 3e-35 Identities = 84/201 (41%), Positives = 125/201 (61%), Gaps = 7/201 (3%) Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFI----TLTRANRHNISFAEVE 175 L +P+VG+ VLASA MDK +TK +L+ G+ P++ T + I F + E Sbjct: 2 LETLKMPYVGTGVLASACGMDKIMTKYVLQAGGIPQVPYMPVLYTQWKEQPQQI-FEQCE 60 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 L P+FVKPAN GSSVG+SK + E+ A+ +D +VI+EQGI+ REIE AVLG Sbjct: 61 GSLLYPMFVKPANMGSSVGISKAENREELDNALK-ELLYDTRVIIEQGIEAREIEVAVLG 119 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 N++ + + GEIV FY Y++KYID + + +PA + E+ +K + A +AY LG Sbjct: 120 NEDVRTTVAGEIVKDVAFYDYNSKYID-NKITMQIPAEVPQEVQEKAQEYAKKAYTMLGG 178 Query: 296 AGMARVDVFLTPENEVVINEI 316 +G++R D FLT +NE+ +NE+ Sbjct: 179 SGLSRCDFFLTNKNELFLNEL 199 >ref|NP_253100.1| (NC_002516) D-alanine--D-alanine ligase [Pseudomonas aeruginosa] pir||C83094 D-alanine--D-alanine ligase PA4410 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAF26456.1| (U19797) D-alanine:D-alanine ligase B [Pseudomonas aeruginosa] gb|AAG07798.1|AE004856_9 (AE004856) D-alanine--D-alanine ligase [Pseudomonas aeruginosa] Length = 319 Score = 148 bits (374), Expect = 6e-35 Identities = 110/343 (32%), Positives = 161/343 (46%), Gaps = 51/343 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 RV ++FGGKSAE EVSL+S ++ ++ + G+D G D LL Sbjct: 20 RVAVLFGGKSAEREVSLKSGAMVLQSL-------LAAGVDAFG----IDVGEDLL----- 63 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 +L++ + +D F I+HG GEDGS+QG+L A Sbjct: 64 --------------------QRLVEEK-------IDRAFIILHGRGGEDGSMQGLLECAG 96 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ GS VLASA MDK TKR+ GL + L + E +LG PL V Sbjct: 97 IPYTGSGVLASALAMDKLRTKRVWLSLGLPTPDYAVLASED----DCREAAQRLGFPLIV 152 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KPA++GSS+G++KV ++ A A +D +V+VEQ I G E A L A Sbjct: 153 KPAHEGSSIGMAKVGGLDELIAAWREAARYDSQVLVEQWISGPEFTVATLRGQVLPAIRL 212 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 G FY YD KY+ D + VP + +++ + +A LG G R DV Sbjct: 213 GT---PHTFYDYDAKYLASD-TRYQVPCGLDEAKERELKELTARACDALGIQGWGRADVM 268 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 E + E+NT PG T+ S+ P +A+GL + L+ ++ Sbjct: 269 QDAEGRFWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAIL 311 >gb|AAB62520.1| (U91913) D-alanine:D-alanine ligase [Streptococcus intermedius] Length = 197 Score = 148 bits (373), Expect = 1e-34 Identities = 73/197 (37%), Positives = 121/197 (61%), Gaps = 1/197 (0%) Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L V +P+VG ++L+S+ MDK TKR+L AG+ P++ + AEVE L Sbjct: 2 LEVLKMPYVGCNILSSSIAMDKITTKRVLASAGIPQVPYVAVVEGEDVEEKIAEVEVNLT 61 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+F KP+N GSSVG+SK ++++ A+ LAF++D +V++EQG+ REIE + GN+ Sbjct: 62 YPVFTKPSNMGSSVGISKSENKDELCSALKLAFKYDTRVLIEQGVNAREIEVGLFGNEGA 121 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 ++S GE+V FY Y+ KYID + + +PA ++ ++ + A +A+ +G G++ Sbjct: 122 KSSLPGEVVKDVAFYDYEAKYID-NKITMDIPAKLSEDVIATMCDYAEKAFHAIGGVGLS 180 Query: 300 RVDVFLTPENEVVINEI 316 R D F T + E+ +NE+ Sbjct: 181 RCDFFYTNKGEIFLNEL 197 >pir||S36974 hypothetical protein 8 (atpB 5' region) - Synechococcus sp. (PCC 6716) (fragment) emb|CAA49884.1| (X70432) URF 8 [Synechococcus sp.] Length = 218 Score = 147 bits (371), Expect = 2e-34 Identities = 90/240 (37%), Positives = 133/240 (54%), Gaps = 32/240 (13%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQS----AKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 M +LRVG++FGG+S EHEVS+ S A+ D ++ R++VV + I K G+W ++ Sbjct: 1 MGRLRVGLLFGGRSREHEVSVVSAAAIAQAFADPLNGDRYEVVPIYIQKDGRWRCTET-- 58 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 ++A P+ SL P E T+DV FPI+HG GEDG++ Sbjct: 59 --VSAPAPSL-----DNQSLWSFPAVAE-------------TIDVWFPILHGPNGEDGTI 98 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN------RHNIS 170 QG+L + P+VGS V ASA MDK + K GL ++ ++R+ R+ Sbjct: 99 QGLLEMMQRPYVGSGVAASAIGMDKILMKTFFGAVGLPQVQYVAISRSELWSDPCRYRQV 158 Query: 171 FAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIE 230 +E++LG P FVKPAN GSSVG+SK + +Q A++ A E D ++IVE G+ RE+E Sbjct: 159 CDRIETELGYPCFVKPANLGSSVGISKAKNRQQLTTALETAAELDRRIIVEAGVVARELE 218 >gb|AAA87683.1| (U08913) putative D-alanine:D-alanine ligase [Lactobacillus salivarius] Length = 201 Score = 147 bits (371), Expect = 2e-34 Identities = 76/196 (38%), Positives = 126/196 (63%), Gaps = 4/196 (2%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 + R+ N P++GS V +S DKD+T +LL G+ ++ +T N+ + +A+V +L Sbjct: 1 LFRLLNKPWIGSGVTSSGVSFDKDLTNKLLTLNGIRNTKYVLVTPENKADYPYAKVAEEL 60 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGND 237 G LFVKPA QGSSVG+ KV +EE+Y A++ F++D+K++VE+ IK RE+EC+VLGN Sbjct: 61 GETLFVKPARQGSSVGIHKVRNEEEYNAALEDGFKYDYKILVEEAIKNPREVECSVLGNR 120 Query: 238 NPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 + +AS G I + + DFY Y+ K++D G +P + ++ + + +++ A++ L Sbjct: 121 DIKASKLGAIRIPESDDFYDYNNKFVDASGVVFEMPIKLPEKLTKENQQMSLDAFRALDN 180 Query: 296 AGMARVDVFLTPENEV 311 G+AR+D FL EN+V Sbjct: 181 RGLARMD-FLVDENDV 195 >sp|O51927|DDL_BUCAP D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAC46067.1| (AF012886) D-alanine: D-alanine ligase [Buchnera aphidicola] Length = 306 Score = 147 bits (370), Expect = 2e-34 Identities = 77/253 (30%), Positives = 146/253 (57%), Gaps = 7/253 (2%) Query: 100 DVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFI 159 D + +HGT GEDGS+QG+L N+P+ GS +++SA +DK TK L + L + P I Sbjct: 56 DSAYIALHGTGGEDGSIQGILEYLNIPYTGSGIMSSAISLDKWRTKLLWKSLSLRVLPDI 115 Query: 160 TLTRANRHNISFAEVES---KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH 216 L + + +++ + KL P+ +KP N GSS+G++ V + +++LAF + + Sbjct: 116 YLQKKDISKYTYSYILKKILKLKFPVVIKPNNAGSSIGITIVNHPDLLIDSINLAFNYSN 175 Query: 217 KVIVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAP 276 +I+E+ +KG E ++L N + +I+ ++FY Y +KYI E + + P+ + Sbjct: 176 NIIIEKFLKGTEYTVSIL---NKKVLPPIKIITKNNFYDYSSKYI-ESSTEYICPSGLNY 231 Query: 277 EINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASG 336 + ++++ I A+ +LGC G R+D L +++ + EINT+PG T+ S+ P + Sbjct: 232 QKEEELKKIVEIAWNSLGCKGCGRIDAILDNKDKFWLLEINTIPGMTHRSLVPMASKKYR 291 Query: 337 LGYTDLITRLIEL 349 + + +LI +++++ Sbjct: 292 ISFVNLILKILKI 304 >ref|NP_103112.1| (NC_002678) D-alanyl-D-alanine ligase [Mesorhizobium loti] dbj|BAB48898.1| (AP002997) D-alanyl-D-alanine ligase [Mesorhizobium loti] Length = 308 Score = 147 bits (370), Expect = 2e-34 Identities = 107/354 (30%), Positives = 173/354 (48%), Gaps = 58/354 (16%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+ V ++ GG S+E VSL S K DA++ + V + + + D + L Sbjct: 1 MKSKHVAVLLGGFSSERPVSLSSGKACADALENEGYQVTRVDVGR-------DVGSVLAE 53 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 L+P DV F +HG GEDG++QG+L Sbjct: 54 --------LKP----------------------------DVAFNALHGPFGEDGTIQGIL 77 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 +P+ S VLASA M+K+ K++++ G+ P ANR I + + + Sbjct: 78 EYLGIPYTHSGVLASALAMNKEQAKKIVKTVGV---PVAESKVANRFAI---QNKHPMKP 131 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDN 238 P +KP N+GSS GV V+ + + V + E+ + V+VE+ I GRE+ CAV+G + Sbjct: 132 PYVIKPVNEGSSFGVVIVSEGQSHPPQVVGSSEWKYGDTVMVERYIHGRELTCAVMG--D 189 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 C I FY YD+KY+ G+K PA ++P I KI+ +A++A+Q +GC G+ Sbjct: 190 VALGVCEIIPTGHSFYDYDSKYV-AGGSKHECPAKVSPNIYQKIQTLALKAHQAVGCRGV 248 Query: 299 ARVDVFL----TPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 +R D + EVV E+NT PG T S+ P++ +G + +L++ ++E Sbjct: 249 SRSDFRYDDRHSENGEVVWLEVNTQPGMTPTSLVPEIAAHAGHSFGELLSWMVE 302 >gb|AAB17897.1| (U39774) D-alanine:D-alanine ligase [Enterococcus avium] Length = 200 Score = 144 bits (362), Expect = 2e-33 Identities = 78/201 (38%), Positives = 123/201 (60%), Gaps = 6/201 (2%) Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT----RANRHNISFAEVE 175 L ++P+VG+ V+ SA MDK +TK +L+ AG+ P++ + + N I F + E Sbjct: 2 LETLDMPYVGAGVMTSACAMDKIMTKYILQAAGIPQVPYVPVLKNQWKENPKQI-FDKCE 60 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 L P+FVKPAN GSSVG+S+ + E+ A+ A+ +D + +VEQGI EIE AVLG Sbjct: 61 GTLLYPMFVKPANMGSSVGISRAENREELQNALQEAYRYDSRALVEQGIDACEIEVAVLG 120 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 ND+ + + GE+V FY Y+ KYI+ + ++ +PA + ++ K R A A LG Sbjct: 121 NDDVRTTLPGEVVKEEAFYDYNAKYIN-NTIQMAIPADVPEDVMQKARDFAKSAISMLGG 179 Query: 296 AGMARVDVFLTPENEVVINEI 316 +G++R D FLT +NE+ ++E+ Sbjct: 180 SGLSRCDFFLTNKNELFLDEL 200 >ref|NP_355054.1| (NC_003062) AGR_C_3788p [Agrobacterium tumefaciens] [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAK87839.1| (AE008125) AGR_C_3788p [Agrobacterium tumefaciens str. C58 (Cereon)] Length = 334 Score = 142 bits (359), Expect = 4e-33 Identities = 94/256 (36%), Positives = 144/256 (55%), Gaps = 17/256 (6%) Query: 100 DVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFI 159 DV F +HG GEDG++QG+L +P+ S VLASA MDK K++ AG+ +A Sbjct: 83 DVAFNALHGPFGEDGTIQGILEYLAIPYTHSGVLASALAMDKAQAKKVAAAAGIPVAGER 142 Query: 160 TLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY--AIAVDLAFEFDHK 217 + R + + E L P VKP +GSS GV V ++ + I + F ++ Sbjct: 143 VMNRFDFTS------EHPLQPPYVVKPVREGSSFGVVIVKEDQSHPPQILTSSEWPFGNQ 196 Query: 218 VIVEQGIKGREIECAVLGNDNPQASTCGEIV-LTSDFYAYDTKYIDEDGAKVVVPAAIAP 276 V+VE+ I GRE+ C VL + +A E+V L +FY YD KY G+K V+PA I+P Sbjct: 197 VMVERYIHGRELTCGVL---DGEALGVTEVVPLGHNFYDYDAKYA-AGGSKHVIPAGISP 252 Query: 277 EINDKIRAIAVQAYQTLGCAGMARVDV----FLTPENEVVINEINTLPGFTNISMYPKLW 332 +I KI+ +AV A+Q +GC G++R D + + EV+ E+NT PG T S+ P++ Sbjct: 253 KIYQKIQTLAVMAHQAIGCRGVSRSDFRYDDRFSEDGEVIWLEVNTQPGMTPTSLVPEMA 312 Query: 333 QASGLGYTDLITRLIE 348 +G + DL++ ++E Sbjct: 313 AHAGRSFGDLVSWMVE 328 >ref|NP_532764.1| (NC_003304) D-alanine:D-alanine ligase [Agrobacterium tumefaciens str. C58 (U. Washington)] gb|AAL43080.1| (AE009159) D-alanine:D-alanine ligase [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 308 Score = 142 bits (358), Expect = 5e-33 Identities = 94/256 (36%), Positives = 144/256 (55%), Gaps = 17/256 (6%) Query: 100 DVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFI 159 DV F +HG GEDG++QG+L +P+ S VLASA MDK K++ AG+ +A Sbjct: 57 DVAFNALHGPFGEDGTIQGILEYLAIPYTHSGVLASALAMDKAQAKKVAAAAGIPVAGER 116 Query: 160 TLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY--AIAVDLAFEFDHK 217 + R + + E L P VKP +GSS GV V ++ + I + F ++ Sbjct: 117 VMNRFDFTS------EHPLQPPYVVKPVREGSSFGVVIVKEDQSHPPQILTSSEWPFGNQ 170 Query: 218 VIVEQGIKGREIECAVLGNDNPQASTCGEIV-LTSDFYAYDTKYIDEDGAKVVVPAAIAP 276 V+VE+ I GRE+ C VL + +A E+V L +FY YD KY G+K V+PA I+P Sbjct: 171 VMVERYIHGRELTCGVL---DGEALGVTEVVPLGHNFYDYDAKYA-AGGSKHVIPAGISP 226 Query: 277 EINDKIRAIAVQAYQTLGCAGMARVDV----FLTPENEVVINEINTLPGFTNISMYPKLW 332 +I KI+ +AV A+Q +GC G++R D + + EV+ E+NT PG T S+ P++ Sbjct: 227 KIYQKIQTLAVMAHQAIGCRGVSRSDFRYDDRFSEDGEVIWLEVNTQPGMTPTSLVPEMA 286 Query: 333 QASGLGYTDLITRLIE 348 +G + DL++ ++E Sbjct: 287 AHAGRSFGDLVSWMVE 302 >ref|NP_359970.1| (NC_003103) D-alanine--D-alanine ligase [EC:6.3.2.4] [Rickettsia conorii] gb|AAL02871.1| (AE008598) D-alanine--D-alanine ligase [EC:6.3.2.4] [Rickettsia conorii] Length = 321 Score = 140 bits (354), Expect = 2e-32 Identities = 108/350 (30%), Positives = 175/350 (49%), Gaps = 56/350 (16%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + ++ GG SAE EVSL S++ + A+ + + V + D Sbjct: 22 KKHIALMAGGMSAEREVSLVSSEGVSKALIELGYRVTFI--------------------D 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 A IA+R Q +P D++F +HGT GEDG L G+L + Sbjct: 62 MGADIAVR-------------------LQEIKP----DIVFNCLHGTYGEDGCLPGLLNI 98 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+ S VL+SA DK ++ +N+A I + +++ NI + P Sbjct: 99 MRIPYTHSGVLSSALAFDKIHSRIWFLTNNINMAEGIVVNKSD--NIK----NDPMKRPY 152 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 +KP QGSS+GV + +E+ + A D F + +VI+EQ IKGRE++ AVL N +A Sbjct: 153 VIKPLTQGSSIGVEVIFAEDDFNFA-DYDFPYGDQVIIEQYIKGRELQVAVL---NGKAL 208 Query: 243 TCGEI-VLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 EI +L + FY Y+TKY E A + PA + + +K+ + + Y+T+ C G AR Sbjct: 209 GALEIKLLKNRFYDYETKYT-EGFADHLCPAPLPANLYEKLLIESEKIYKTMNCKGPARA 267 Query: 302 DVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + L + N++ EINT PG +S+ P++ +G+ +T+LI +I+ A Sbjct: 268 EFILEEQTNKLYALEINTHPGMMPLSIVPEIAAYAGINFTNLIEEIIKTA 317 >ref|NP_539499.1| (NC_003317) D-ALANINE--D-ALANINE LIGASE [Brucella melitensis] gb|AAL51763.1| (AE009500) D-ALANINE--D-ALANINE LIGASE [Brucella melitensis] Length = 315 Score = 140 bits (352), Expect = 2e-32 Identities = 94/256 (36%), Positives = 145/256 (55%), Gaps = 17/256 (6%) Query: 100 DVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFI 159 DV+F +HG GEDG++QG+L +P+ S VLASA MDKD K++ AG+ +AP Sbjct: 64 DVVFNALHGPFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPSR 123 Query: 160 TLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV--DLAFEFDHK 217 + NR +I + + P VKP +GSS GV V ++ + V +++ + Sbjct: 124 LM---NRFDIG---SQHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDE 177 Query: 218 VIVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKV-VVPAAIAP 276 V+VE I GRE+ CAV+G+ C + + FY YD+KY+ GA V PA I P Sbjct: 178 VMVEGYIAGRELTCAVMGDR--AMDVCEIMPVGYQFYDYDSKYV--AGASTHVCPAKILP 233 Query: 277 EINDKIRAIAVQAYQTLGCAGMARVDV----FLTPENEVVINEINTLPGFTNISMYPKLW 332 I KI+ +A+ A++ +GC G++R D + E EVV EINT PG T S+ P + Sbjct: 234 NIYQKIQTMALTAHRAIGCRGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIA 293 Query: 333 QASGLGYTDLITRLIE 348 +A+G+ + +L++ ++E Sbjct: 294 KAAGISFAELLSWMVE 309 >gb|AAK97387.1|AF363615_1 (AF363615) D-alanine:D-alanine ligase 2 [Enterococcus gallinarum] Length = 343 Score = 138 bits (347), Expect = 1e-31 Identities = 104/354 (29%), Positives = 174/354 (48%), Gaps = 20/354 (5%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLL---- 59 + + ++ GG S E +VSL S I A+++ +LL + QG + S Y + Sbjct: 1 MNIVVLAGGLSHERDVSLSSGGQIAMALEERGHRALLLDL-YQGNNEKTFESAYSIQKQE 59 Query: 60 -NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118 N D + P L Q ++ LI + D F +HG +GE+G LQ Sbjct: 60 ENPYDYFVVENEPDIEKLIQ-KNSNQKNLIGKNVVELCLNADFCFIALHGGIGENGKLQA 118 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 + + + GS S MDKD+ K+L++ LN P + + E Sbjct: 119 FFDIYGIRYSGSHYKGSLLAMDKDIAKQLMK---LNDIP------TPKWQLWEQGQEVYY 169 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 P VKP + GSS+GV V ++EQ+ A+ A +++ KV++EQ I+GRE VLG++ Sbjct: 170 STPCVVKPIDNGSSIGVEIVENKEQFFKALKKAEKYNSKVMIEQKIEGREFSVGVLGDNV 229 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 A EI+ FY Y+ KY + + + PA I+ ++ ++ + V + LG + Sbjct: 230 LPAI---EIIPQQGFYNYENKY-QKGATEEITPADISSDLATRLSEMTVLVNKVLGLSIY 285 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 +RVD +T E ++ E N+LPG T S+ P+ +A G+ +++L ++EL+LE Sbjct: 286 SRVDYIVTKELDIYCIEANSLPGMTPTSLLPQEAEAIGISFSELCETIVELSLE 339 >ref|NP_220634.1| (NC_000963) D-ALANINE--D-ALANINE LIGASE (ddlB) [Rickettsia prowazekii] sp|Q9ZDS6|DDL_RICPR D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||E71679 D-alanine--D-alanine ligase (EC 6.3.2.4) B - Rickettsia prowazekii emb|CAA14711.1| (AJ235271) D-ALANINE--D-ALANINE LIGASE (ddlB) [Rickettsia prowazekii] Length = 321 Score = 137 bits (346), Expect = 1e-31 Identities = 103/350 (29%), Positives = 173/350 (49%), Gaps = 56/350 (16%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +V GG SAE EVSL S+ + A+ + + V + D Sbjct: 22 KKHIALVAGGMSAEREVSLVSSAGVSKALIELGYKVTFV--------------------D 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 A IA++ Q P D++F +HGT GEDG L G+L + Sbjct: 62 MGADIAVK-------------------LQEINP----DIVFNCLHGTYGEDGCLPGLLNI 98 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+ S +L+SA DK + + +NIA I +++++ N + P Sbjct: 99 MRIPYTHSGLLSSALAFDKIHFRSCVLKNNINIADSIVVSKSDHINT------DPMKRPY 152 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 +KP QGSS+GV + E+ + D F + +I+EQ I+G+E++ A+L N +A Sbjct: 153 VIKPLKQGSSIGVEVIFEEDDFNF-TDYDFPYGEDIIIEQYIQGQELQVALL---NGKAL 208 Query: 243 TCGEI-VLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 EI +L + FY Y+TKY +E A+ V PA + + K+ + + Y+T+ C G R Sbjct: 209 GVLEIKLLKNRFYDYETKY-NEGFAEHVCPAPLPANLYKKLLIESEKIYKTINCKGPVRA 267 Query: 302 DVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + L + N++ + EINT PG T +S+ P++ +G+ +T+LI +I++A Sbjct: 268 EFILEEQTNKLYVLEINTHPGMTPLSIVPEIAAYAGINFTNLIEEIIKMA 317 >gb|AAB17898.1| (U39776) D-alanine:D-alanine ligase [Enterococcus cecorum] Length = 195 Score = 136 bits (343), Expect = 3e-31 Identities = 80/202 (39%), Positives = 119/202 (58%), Gaps = 13/202 (6%) Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRH---NISFAEVES 176 L +P+VG+ VLASA MDK +TK +L+ G+ P++ + + + F E Sbjct: 2 LETLKMPYVGTGVLASACGMDKIMTKYVLQAGGIPQVPYVPVLAMHWKQDPQLIFEHCEG 61 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN 236 L P+FVKPAN GSSVG+SK + ++ A++ AF +D + I+EQG IE AVL Sbjct: 62 SLLYPMFVKPANMGSSVGISKAENRDELEAALNEAFLYDTRGIIEQG-----IEVAVLEM 116 Query: 237 DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVV--VPAAIAPEINDKIRAIAVQAYQTLG 294 N + + GEIV FY Y++KYID K+V +PA + E+ K + A +AY LG Sbjct: 117 KNVRTTMAGEIVKDVAFYDYNSKYIDN---KIVMQIPAQVPDEVQQKAQEYAKKAYTMLG 173 Query: 295 CAGMARVDVFLTPENEVVINEI 316 +G++R D FLT +NE+ +NE+ Sbjct: 174 GSGLSRCDFFLTNKNELFLNEL 195 >ref|NP_298089.1| (NC_002488) D-alanine--D-alanine ligase B [Xylella fastidiosa 9a5c] pir||F82763 D-alanine--D-alanine ligase B XF0799 [imported] - Xylella fastidiosa (strain 9a5c) gb|AAF83609.1|AE003919_20 (AE003919) D-alanine--D-alanine ligase B [Xylella fastidiosa 9a5c] Length = 320 Score = 134 bits (338), Expect = 1e-30 Identities = 109/354 (30%), Positives = 174/354 (48%), Gaps = 60/354 (16%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 RV ++ GG SAE EVSL S +N+++ + + G+D Q Sbjct: 20 RVAVLLGGTSAEREVSLLSGRNVLEVLR-------VRGVDAQ------------------ 54 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTL--GEDGSLQGMLRV 122 S+ VP + L++ + D +F ++HG GEDG +QG+++ Sbjct: 55 ----------SVDGVPALAQ-ALVERR-------FDRVFNVLHGHNGGGEDGVVQGLMQA 96 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+ GSDVL SA MDK TK++ GL + +L+ + + LG P+ Sbjct: 97 FGVPYTGSDVLGSALSMDKVRTKQVWLALGLPTPRYASLSVCAT-AVEVRQAVEMLGFPV 155 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 +KPA +GSSVGVS+V + E AV LA ++ ++++EQ I+G E+ ++L + A Sbjct: 156 IIKPAKEGSSVGVSRVFALEHLEEAVALAARYEGELLMEQLIEGDELTVSIL---DEMAL 212 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEIND----KIRAIAVQAYQTLGCAGM 298 IV +Y Y+ KY+ ED V P ++D +I +A+ A++ +GC G Sbjct: 213 PSIRIVPQGQWYDYNAKYLAEDTQYV------CPGLDDVAEAEIARLALAAFRAVGCRGW 266 Query: 299 ARVDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 RVDV + E+NT PG T S+ PK G+G+ DL+ R++E L Sbjct: 267 GRVDVMRERGSGRFFLLEVNTAPGMTTHSLVPKAASQLGMGFDDLVWRILEQTL 320 >ref|NP_273472.1| (NC_003112) D-alanine--D-alanine ligase [Neisseria meningitidis MC58] pir||C81201 D-alanine--D-alanine ligase NMB0424 [imported] - Neisseria meningitidis (group B strain MD58) gb|AAF40862.1| (AE002398) D-alanine--D-alanine ligase [Neisseria meningitidis MC58] Length = 304 Score = 134 bits (336), Expect = 2e-30 Identities = 114/347 (32%), Positives = 168/347 (47%), Gaps = 52/347 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 +V ++ GG S+E E+SL S I++A+ KS+ GID Sbjct: 6 KVAVLMGGFSSEREISLDSGTAILNAL-KSK------GIDA------------------- 39 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 A P T L++ + AQ Q F I+HGT GEDG++QG L + Sbjct: 40 --YAFDPKETPLSE---------LKAQGFQ------TAFNILHGTYGEDGAVQGALELLG 82 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ GS V ASA MDK K + + GL + F L + F VE KLGLP+FV Sbjct: 83 IPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVL----HDDTDFDAVEEKLGLPMFV 138 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KPA +GSSVGV KV + + + ++I E+ I G E C VL N + Sbjct: 139 KPAAEGSSVGVVKVKGKGRLKSVYEELKHLQGEIIAERFIGGGEYSCPVL---NGKGLPG 195 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKI-RAIAVQAYQTLGCAGMARVDV 303 I+ ++FY Y+ KY + D P+ E + + R +AV+ Q +G G RVD Sbjct: 196 IHIIPATEFYDYEAKY-NRDDTIYQCPSEDLTEAEESLMRELAVRGAQAIGAEGCVRVDF 254 Query: 304 FLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + ++ + EINTLPG T+ S+ PK +G+G+ DL +++ A Sbjct: 255 LKDTDGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCIEILKTA 301 >ref|NP_284760.1| (NC_003116) D-alanine--D-alanine ligase B [Neisseria meningitidis Z2491] pir||H81776 D-alanine--D-alanine ligase (EC 6.3.2.4) B NMA2060 [imported] - Neisseria meningitidis (group A strain Z2491) emb|CAB85278.1| (AL162758) D-alanine--D-alanine ligase B [Neisseria meningitidis Z2491] Length = 304 Score = 134 bits (336), Expect = 2e-30 Identities = 113/346 (32%), Positives = 163/346 (46%), Gaps = 50/346 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 +V ++ GG S+E E+SL S I++A+ KS+ GID Sbjct: 6 KVAVLMGGFSSEREISLDSGTAILNAL-KSK------GIDA------------------- 39 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 A P T L++ + AQ Q F I+HGT GEDG++QG L + Sbjct: 40 --YAFDPKETPLSE---------LKAQGFQ------TAFNILHGTYGEDGAVQGALELLG 82 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ GS V ASA MDK K + + GL + F L + F VE KLGLP+FV Sbjct: 83 IPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVL----HDDTDFDAVEEKLGLPMFV 138 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KPA +GSSVGV KV + + + F ++I E+ I G E C VL N + Sbjct: 139 KPAAEGSSVGVVKVKGKGRLKSVYEELKHFQGEIIAERFIGGGEYSCPVL---NGKGLPG 195 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 I+ ++FY Y+ KY D + +R +AV+ Q +G G RVD Sbjct: 196 IHIIPATEFYDYEAKYNRNDTIYQCPSEDLTEAEESLMRELAVRGAQAIGAEGCVRVDFL 255 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + ++ + EINTLPG T S+ PK G+G+ DL +++ A Sbjct: 256 KDTDGKLYLLEINTLPGMTGHSLVPKSAAVMGVGFADLCIEILKTA 301 >ref|NP_213366.1| (NC_000918) D-alanine:D-alanine ligase [Aquifex aeolicus] sp|O66806|DDL_AQUAE D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||B70347 D-alanine--D-alanine ligase (EC 6.3.2.4) B - Aquifex aeolicus gb|AAC06765.1| (AE000694) D-alanine:D-alanine ligase [Aquifex aeolicus] Length = 291 Score = 131 bits (329), Expect = 1e-29 Identities = 95/346 (27%), Positives = 173/346 (49%), Gaps = 58/346 (16%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +RV ++ GG+S+E E+SL++ K + A+ + +V L +DK Sbjct: 1 MRVVVLMGGRSSEREISLKTGKAVAKALRELGHEVYELDLDK------------------ 42 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 ++P K L++ + D +F +HG GEDG++QG+L + Sbjct: 43 --------------ELPCK----LLEIKP-------DKVFIALHGRYGEDGTVQGLLEIL 77 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFIT-LTRANRHNISFAEVESKLGLPL 182 ++P+ GSD +ASA +DKD TKR+++ G+N + T ++ + N + + P Sbjct: 78 DIPYTGSDTIASAVSIDKDFTKRIVKSLGINTPDWETFISEGDVLNTEWNK------FPA 131 Query: 183 FVKPANQGSSVGVSKVTS-EEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 VKP +GSSVG+ V S EE A+DL + +V+VE+ ++GR++ +L +A Sbjct: 132 VVKPVREGSSVGLKIVESLEELKEYALDL-LKKTERVMVEEFVEGRDMTVGILKG---EA 187 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 EI+ Y Y+ KY ++ +++ K++ I+++ + L AR+ Sbjct: 188 LPVVEIIPKKGVYDYECKYTKGMSEYRILKDE---KLSKKLQEISLKISKFLSLKDFARI 244 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 D +T E ++ E+NT+PG T +S+ P + G+ + LI+ +I Sbjct: 245 DFRVTKEGKIFFLEVNTIPGMTELSLLPMAAKEKGMDFKKLISIII 290 >gb|AAB41857.1| (U69168) D-Alanine:D-Alanine ligase [Streptococcus sanguinis] Length = 197 Score = 130 bits (327), Expect = 2e-29 Identities = 73/198 (36%), Positives = 114/198 (56%), Gaps = 3/198 (1%) Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L V +P+VG ++L+S+ MDK TKR+L AG+ P++ L E+E KL Sbjct: 2 LEVLKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLT 61 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREIECAVLGNDN 238 P+F KP+N GSSVG+SK + +Q + + +V+VEQG + REIE +LGN + Sbjct: 62 YPVFTKPSNMGSSVGISK-SETKQNCVLLWTWLSIRRRVLVEQGDRTAREIEVGLLGNVD 120 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 +++ GE+V FY Y+ KYID + + +PA I E+ +R A A++ LG G+ Sbjct: 121 VKSTLPGEVVKDVAFYDYEAKYID-NKITMDIPAKIPEEVVSLMRQNAEAAFRALGGLGL 179 Query: 299 ARVDVFLTPENEVVINEI 316 +R D F + +V +NE+ Sbjct: 180 SRCDFFYAEDGQVFLNEL 197 >ref|NP_228072.1| (NC_000853) D-alanine--D-alanine ligase [Thermotoga maritima] sp|P46805|DDL_THEMA D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||B72400 D-alanine--D-alanine ligase (EC 6.3.2.4) B - Thermotoga maritima (strain MSB8) gb|AAD35347.1|AE001708_15 (AE001708) D-alanine--D-alanine ligase [Thermotoga maritima] Length = 303 Score = 130 bits (327), Expect = 2e-29 Identities = 94/348 (27%), Positives = 160/348 (45%), Gaps = 54/348 (15%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +RV ++ GG S E E+SL+S + + A++K ++ + + + ++L D Sbjct: 1 MRVALLMGGVSREREISLRSGERVKKALEKLGYEHTVFDVRE----------DFLKKVDQ 50 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 L + DV+F ++HGT GEDG+LQ +L Sbjct: 51 --------------------------------LKSFDVVFNVLHGTFGEDGTLQAILDFL 78 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 + + GSD +S C DK VT R L+ + I F+ + + S LG P Sbjct: 79 GIRYTGSDAFSSMICFDKLVTYRFLKGT-VEIPDFVEIKEFMK--------TSPLGYPCV 129 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP-QAS 242 VKP +GSS+GV S+E++ A+ VIV++ I GRE+ ++L + + Sbjct: 130 VKPRREGSSIGVFVCESDEEFQHALKEDLPRYGSVIVQKYIPGREMTVSILETEKGFEIL 189 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 E+ FY Y KY + + ++PA + P ++ +A++A+ GC G RVD Sbjct: 190 PVLELRPKRRFYDYVAKYTKGE-TEFILPAPLNPSEERLVKEMALKAFVEAGCRGFGRVD 248 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + + EINT+PG T S P +A G+ + +L+ +++ A Sbjct: 249 GIFS-DGRFYFLEINTVPGLTETSDLPASAKAGGIEFEELVEIILKSA 295 >pir||PN0478 vancomycin resistance-conferring protein - Enterococcus faecalis (strain V583) (fragment) Length = 196 Score = 130 bits (327), Expect = 2e-29 Identities = 71/202 (35%), Positives = 118/202 (58%), Gaps = 10/202 (4%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 + ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 1 LFELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIEKGDKPE------ARTL 54 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN-D 237 P+FVKPA GSS GV+KV S E+ A++ A ++D K+++EQ I G E+ CAV+GN D Sbjct: 55 TYPVFVKPARSGSSFGVTKVNSTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNED 114 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDG---AKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 + +I L+ + + E G A ++VPA I E ++++ A + Y+ LG Sbjct: 115 DLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMIIVPADIPVEERNRVQETAKKVYRVLG 174 Query: 295 CAGMARVDVFLTPENEVVINEI 316 C G+ARVD+FL + +V+NE+ Sbjct: 175 CRGLARVDLFLQEDGGIVLNEV 196 >gb|AAA87680.1| (U08910) putative D-alanine:D-alanine ligase [Weissella confusa] Length = 202 Score = 129 bits (324), Expect = 4e-29 Identities = 70/201 (34%), Positives = 117/201 (57%), Gaps = 4/201 (1%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 + R+ P++G+ ASA DKD+TKR+L AG+ ++ LT + N ++ + +L Sbjct: 1 LFRLLQKPYIGAGTAASAMSFDKDLTKRILNQAGVRNTKYVLLTDQDYQNYTYEGLVKEL 60 Query: 179 GLP-LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGI-KGREIECAVLGN 236 G LFVK A QGSSVG+S+VT+ ++ V A ++D+KV+VE + K RE+ ++LGN Sbjct: 61 GTEVLFVKAAKQGSSVGISRVTNAAEFEAGVKDALQYDYKVLVEAALNKPREVFISILGN 120 Query: 237 DNPQASTCGEIVLTSD--FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 + P+AS G IVL +Y Y+ K++D G +P + ++ +I +A+ AY+ LG Sbjct: 121 EQPRASRLGGIVLPEQDVWYDYNNKFVDASGMVFELPVELGDDLEKEITDMALTAYKALG 180 Query: 295 CAGMARVDVFLTPENEVVINE 315 G+ R+D + + + E Sbjct: 181 LVGLTRMDFMIDADGTPYLGE 201 >gb|AAD45667.1|AF136925_1 (AF136925) D-alanine-D-serine ligase [Enterococcus faecalis] Length = 201 Score = 129 bits (323), Expect = 5e-29 Identities = 67/205 (32%), Positives = 121/205 (58%), Gaps = 6/205 (2%) Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN--RHNISFAEV 174 QG+ + ++P+VG + A+A M+K + + G+ P + + + + FA++ Sbjct: 1 QGVFELLDIPYVGCGIGAAAISMNKIMLHQFAEIVGVKSTPSMIIEKGQDLQKVDEFAKI 60 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL 234 G PL++KP GSS G+SKV + A+D A ++D ++++++ +KG EI C +L Sbjct: 61 H---GFPLYIKPNEAGSSKGISKVEQKSDLYKAIDEASKYDSRILIQKEVKGVEIGCGIL 117 Query: 235 GNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 GN+ C +I L F+ Y+ KY + A++++PA ++ + + I+ A + Y+ LG Sbjct: 118 GNEQLVVGECDQISLVDGFFDYEEKY-NLVTAEILLPAKLSIDKKEDIQIKAKKLYRLLG 176 Query: 295 CAGMARVDVFLTPENEVVINEINTL 319 C G+AR+D FLT + E+++NEINTL Sbjct: 177 CKGLARIDFFLTDDGEILLNEINTL 201 >gb|AAD53933.1|AF179611_17 (AF179611) D-alanine:D-alanine ligase [Zymomonas mobilis] Length = 321 Score = 127 bits (318), Expect = 2e-28 Identities = 104/370 (28%), Positives = 179/370 (48%), Gaps = 63/370 (17%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +K V ++ GG S+E E+SL S +++ A++++ + V LL +D+ + + +A Sbjct: 3 DKKHVVVLMGGWSSEREISLLSGRHVGKALEEAGYRVTLLDMDRDIAFKLREA------- 55 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 +P DV+F +HGT GEDGS+QG++ Sbjct: 56 --------KP----------------------------DVVFNALHGTPGEDGSIQGLMD 79 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 + + + S + ASA +DK++TK++L + + + R + + + L P Sbjct: 80 LMAIRYTHSGLTASAIAIDKELTKKILTPENIPMPQGCLVERESLY------TKDPLPRP 133 Query: 182 LFVKPANQGSSVGVSKV--TSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGND 237 +KP N+GSSVGV+ + + + I D + + ++ E IKGRE+ AV+G+ Sbjct: 134 YVLKPVNEGSSVGVAIIDESFNDGQPIRKDQIDPWKNFKTLLAEPFIKGRELTVAVMGD- 192 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 +A E+ + FY Y KY D + PA I EI +K A++++A+Q LGC G Sbjct: 193 --KALAVTELCPNNGFYDYKAKYTDGMTTH-ICPAKIPAEIAEKAMALSLKAHQLLGCRG 249 Query: 298 MARVDVFLTPE---NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 +R D E + + + E+NT PG T +S+ P+ + G+ Y L ++E AL Sbjct: 250 PSRSDFRWDDEAGLDGLFLLEVNTQPGMTPLSLVPEQAKQLGIDYVALCRMIVEEAL--- 306 Query: 355 AADNALKTTM 364 A D +T M Sbjct: 307 AEDTLQETKM 316 >gb|AAA60991.1| (L29639) ligase [Enterococcus flavescens] Length = 197 Score = 126 bits (317), Expect = 3e-28 Identities = 74/199 (37%), Positives = 111/199 (55%), Gaps = 3/199 (1%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT-RANRHNISFAEVESK 177 M + LP+VG V SA CM+K + + G+ AP I LT AN+ A +++ Sbjct: 1 MFELMKLPYVGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNHANQQEQIEAFIQTH 60 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 G P+F KP GSS G++KVT E+ A A+ AF + V++++ I G EI C +LGND Sbjct: 61 -GFPVFFKPNEAGSSKGITKVTCVEEIASALKEAFTYCSAVLLQKNIAGVEIGCGILGND 119 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 + C I L F+ ++ KY AK+ VPA + I K++ A Y++LG G Sbjct: 120 SLTVGACDAISLVDGFFDFEEKY-QLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKG 178 Query: 298 MARVDVFLTPENEVVINEI 316 +AR+D F+T + E+ +NEI Sbjct: 179 LARIDFFVTDQGELYLNEI 197 >emb|CAB64494.1| (AJ387981) D-alanine--D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 125 bits (313), Expect = 9e-28 Identities = 63/145 (43%), Positives = 96/145 (65%), Gaps = 1/145 (0%) Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 AEVE KL P+F KP+N GSSVG+SK ++E+ A+ LAF++D +V+VEQG+ REIE Sbjct: 4 AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKLAFQYDSRVLVEQGVNAREIEV 63 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 +LGN N +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ Sbjct: 64 GLLGNYNVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETAFR 122 Query: 292 TLGCAGMARVDVFLTPENEVVINEI 316 +G G++R D F T + E+ +NE+ Sbjct: 123 AIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAA13259.1| (AJ232256) D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 124 bits (311), Expect = 1e-27 Identities = 62/145 (42%), Positives = 97/145 (66%), Gaps = 1/145 (0%) Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 AEVE KL P+F KP+N GSSVG+SK ++E+ A++LAF++D +V+VEQG+ REIE Sbjct: 4 AEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQALELAFQYDSRVLVEQGVNAREIEV 63 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ Sbjct: 64 GLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETAFR 122 Query: 292 TLGCAGMARVDVFLTPENEVVINEI 316 +G G++R D F T + E+ +NE+ Sbjct: 123 AIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAA13267.1| (AJ232264) D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 124 bits (311), Expect = 2e-27 Identities = 62/145 (42%), Positives = 96/145 (65%), Gaps = 1/145 (0%) Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 AEVE KL P+F KP+N GSSVG+SK ++E+ A++LAF +D +V+VEQG+ REIE Sbjct: 4 AEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQALELAFRYDSRVLVEQGVNAREIEV 63 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ Sbjct: 64 GLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVTVMRQNAETAFR 122 Query: 292 TLGCAGMARVDVFLTPENEVVINEI 316 +G G++R D F T + E+ +NE+ Sbjct: 123 AIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAA13262.1| (AJ232259) D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 124 bits (310), Expect = 2e-27 Identities = 62/145 (42%), Positives = 96/145 (65%), Gaps = 1/145 (0%) Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 AEVE KL P+F KP+N GSSVG+SK ++E+ A++LAF +D +V+VEQG+ REIE Sbjct: 4 AEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQALELAFRYDSRVLVEQGVNAREIEV 63 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ Sbjct: 64 GLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKVTMDIPAKISDDVVAVMRQNAETAFR 122 Query: 292 TLGCAGMARVDVFLTPENEVVINEI 316 +G G++R D F T + E+ +NE+ Sbjct: 123 AIGGLGLSRCDFFYTDKGEIFLNEL 147 >gb|AAC83823.1| (AF098802) putative D-alanine:D-alanine ligase [Paenibacillus popilliae] Length = 158 Score = 124 bits (310), Expect = 2e-27 Identities = 66/153 (43%), Positives = 97/153 (63%), Gaps = 6/153 (3%) Query: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR----ANRHNISFAEVESKLGLP 181 P+VG+ VLAS+ MDK + K + AGL + R N+ I V+++LG P Sbjct: 7 PYVGAGVLASSVGMDKAIMKHVFAHAGLPQCKYEHFLRREWDQNQAEI-LDRVQTELGYP 65 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 FVKPAN GSSVG+SK + + A++LA ++D K+IVE+ + RE+E +VLGND PQA Sbjct: 66 CFVKPANLGSSVGISKARNAAELKQAIELALQYDRKIIVEEFVDAREVEVSVLGNDEPQA 125 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAI 274 S GEI+ +++FY Y KYID +++ +PA + Sbjct: 126 SIPGEIISSNEFYDYKAKYIDGK-SQIAIPAPL 157 >emb|CAB60643.1| (AJ252530) D-ala,D-ala ligase [Streptococcus pneumoniae] emb|CAB64492.1| (AJ387979) D-alanine--D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 124 bits (310), Expect = 2e-27 Identities = 62/145 (42%), Positives = 97/145 (66%), Gaps = 1/145 (0%) Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 AEVE KL P+F KP+N GSSVG+SK ++E+ A++LAF++D +V+VEQG+ REIE Sbjct: 4 AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALELAFQYDSRVLVEQGVNAREIEV 63 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ Sbjct: 64 GLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRRNAETAFR 122 Query: 292 TLGCAGMARVDVFLTPENEVVINEI 316 +G G++R D F T + E+ +NE+ Sbjct: 123 AIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAB16966.1| (Z99841) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB16968.1| (Z99843) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17021.1| (Z99896) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17025.1| (Z99900) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAA13251.1| (AJ232248) D-alanine D-alanine ligase [Streptococcus pneumoniae] emb|CAA13254.1| (AJ232251) D-alanine D-alanine ligase [Streptococcus pneumoniae] emb|CAA13260.1| (AJ232257) D-alanine D-alanine ligase [Streptococcus pneumoniae] emb|CAA13274.1| (AJ232271) D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 123 bits (309), Expect = 2e-27 Identities = 62/145 (42%), Positives = 96/145 (65%), Gaps = 1/145 (0%) Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 AEVE KL P+F KP+N GSSVG+SK ++E+ A++LAF +D +V+VEQG+ REIE Sbjct: 4 AEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQALELAFRYDSRVLVEQGVNAREIEV 63 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ Sbjct: 64 GLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETAFR 122 Query: 292 TLGCAGMARVDVFLTPENEVVINEI 316 +G G++R D F T + E+ +NE+ Sbjct: 123 AIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAB64493.1| (AJ387980) D-alanine--D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 123 bits (309), Expect = 2e-27 Identities = 62/145 (42%), Positives = 97/145 (66%), Gaps = 1/145 (0%) Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 AEVE KL P+F KP+N GSSVG+SK ++E+ A++LAF++D +V+VEQG+ REIE Sbjct: 4 AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALELAFQYDSRVLVEQGVNAREIEV 63 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ Sbjct: 64 GLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETAFR 122 Query: 292 TLGCAGMARVDVFLTPENEVVINEI 316 +G G++R D F T + E+ +NE+ Sbjct: 123 AIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAB64495.1| (AJ387982) D-alanine--D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 123 bits (309), Expect = 2e-27 Identities = 61/145 (42%), Positives = 97/145 (66%), Gaps = 1/145 (0%) Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 AEVE KL P+F KP+N GSSVG+SK ++E+ A++LAF++D +++VEQG+ REIE Sbjct: 4 AEVEGKLTYPVFTKPSNMGSSVGISKSENQEELRQALELAFQYDSRILVEQGVNAREIEV 63 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ Sbjct: 64 GLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETAFR 122 Query: 292 TLGCAGMARVDVFLTPENEVVINEI 316 +G G++R D F T + E+ +NE+ Sbjct: 123 AIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAB60644.1| (AJ252531) D-ala,D-ala ligase [Streptococcus pneumoniae] emb|CAB64499.1| (AJ387986) D-alanine--D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 123 bits (309), Expect = 3e-27 Identities = 62/145 (42%), Positives = 96/145 (65%), Gaps = 1/145 (0%) Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 AEVE KL P+F KP+N GSSVG+SK ++E+ A+ LAF++D +V+VEQG+ REIE Sbjct: 4 AEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKLAFQYDSRVLVEQGVNAREIEV 63 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ Sbjct: 64 GLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETAFR 122 Query: 292 TLGCAGMARVDVFLTPENEVVINEI 316 +G G++R D F T + E+ +NE+ Sbjct: 123 AIGGLGLSRCDFFYTDKEEIFLNEL 147 >emb|CAA13269.1| (AJ232266) D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 123 bits (309), Expect = 3e-27 Identities = 62/145 (42%), Positives = 96/145 (65%), Gaps = 1/145 (0%) Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 AEVE KL P+F KP+N GSSVG+SK ++E+ A++LAF +D +V+VEQG+ REIE Sbjct: 4 AEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRPALELAFRYDSRVLVEQGVNAREIEV 63 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ Sbjct: 64 GLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETAFR 122 Query: 292 TLGCAGMARVDVFLTPENEVVINEI 316 +G G++R D F T + E+ +NE+ Sbjct: 123 AIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAA13253.1| (AJ232250) D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 123 bits (309), Expect = 3e-27 Identities = 63/145 (43%), Positives = 95/145 (65%), Gaps = 1/145 (0%) Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 AEVE KL P+F KP+N GSSVG+SK ++E+ A+ LAF++D +V+VEQG+ REIE Sbjct: 4 AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKLAFQYDSRVLVEQGVNAREIEV 63 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 +LGN + +++ GE+V FY YD KYID + + +PA I+ E+ +R A A++ Sbjct: 64 GLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKISMDIPANISDEVIAVMRRNAETAFR 122 Query: 292 TLGCAGMARVDVFLTPENEVVINEI 316 +G G++R D F T E+ +NE+ Sbjct: 123 AIGGLGLSRCDFFYTDTGEIFLNEL 147 >emb|CAA13246.1| (AJ232243) D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 123 bits (309), Expect = 3e-27 Identities = 62/145 (42%), Positives = 96/145 (65%), Gaps = 1/145 (0%) Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 AEVE KL P+F KP+N GSSVG+SK ++E+ A+ LAF++D +V+VEQG+ REIE Sbjct: 4 AEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKLAFQYDSRVLVEQGVNAREIEV 63 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ Sbjct: 64 GLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETAFR 122 Query: 292 TLGCAGMARVDVFLTPENEVVINEI 316 +G G++R D F T + E+ +NE+ Sbjct: 123 AIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAB60640.1| (AJ252527) D-ala,D-ala ligase [Streptococcus pneumoniae] emb|CAB64489.1| (AJ387976) D-alanine--D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 123 bits (309), Expect = 3e-27 Identities = 62/145 (42%), Positives = 95/145 (64%), Gaps = 1/145 (0%) Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 AEVE KL P+F KP+N GSSVG+SK ++E+ A++LAF +D +V+VEQG+ REIE Sbjct: 4 AEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQALELAFRYDSRVLVEQGVNAREIEV 63 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ Sbjct: 64 GLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETAFR 122 Query: 292 TLGCAGMARVDVFLTPENEVVINEI 316 +G G++R D F T E+ +NE+ Sbjct: 123 AIGGLGLSRCDFFYTDRGEIFLNEL 147 >emb|CAB64496.1| (AJ387983) D-alanine--D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 123 bits (308), Expect = 3e-27 Identities = 62/145 (42%), Positives = 96/145 (65%), Gaps = 1/145 (0%) Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 AEVE KL P+F KP+N GSSVG+SK ++E+ A++LAF++D +V+VEQG+ REIE Sbjct: 4 AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALELAFQYDSRVLVEQGVNAREIEV 63 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 +LGN + +++ GE+V FY YD KYID + + +PA I ++ +R A A++ Sbjct: 64 GLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKIGDDVVAVMRQNAETAFR 122 Query: 292 TLGCAGMARVDVFLTPENEVVINEI 316 +G G++R D F T + E+ +NE+ Sbjct: 123 AIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAB60642.1| (AJ252529) D-ala,D-ala ligase [Streptococcus pneumoniae] emb|CAB64491.1| (AJ387978) D-alanine--D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 123 bits (308), Expect = 3e-27 Identities = 62/145 (42%), Positives = 95/145 (64%), Gaps = 1/145 (0%) Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 AEVE KL P+F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE Sbjct: 4 AEVEEKLAYPVFTKPSNMGSSVGISKAENQEELRQALKLAFRYDSRVLVEQGVNAREIEV 63 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ Sbjct: 64 GLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETAFR 122 Query: 292 TLGCAGMARVDVFLTPENEVVINEI 316 +G G++R D F T + E+ +NE+ Sbjct: 123 AIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAB16971.1| (Z99846) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB16972.1| (Z99847) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB16973.1| (Z99848) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB16974.1| (Z99849) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB16975.1| (Z99850) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB16976.1| (Z99851) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB16977.1| (Z99852) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB16978.1| (Z99853) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB16979.1| (Z99854) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB16980.1| (Z99855) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB16981.1| (Z99856) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB16983.1| (Z99858) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB16984.1| (Z99859) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB16985.1| (Z99860) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB16986.1| (Z99861) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB16987.1| (Z99862) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB16988.1| (Z99863) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17004.1| (Z99879) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17006.1| (Z99881) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17007.1| (Z99882) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17008.1| (Z99883) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17009.1| (Z99884) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17010.1| (Z99885) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17011.1| (Z99886) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17012.1| (Z99887) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17013.1| (Z99888) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17014.1| (Z99889) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17015.1| (Z99890) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17017.1| (Z99892) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17020.1| (Z99895) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17022.1| (Z99897) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17023.1| (Z99898) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17024.1| (Z99899) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAA13244.1| (AJ232241) D-alanine D-alanine ligase [Streptococcus pneumoniae] emb|CAA13250.1| (AJ232247) D-alanine D-alanine ligase [Streptococcus pneumoniae] emb|CAA13258.1| (AJ232255) D-alanine D-alanine ligase [Streptococcus pneumoniae] emb|CAA13272.1| (AJ232269) D-alanine D-alanine ligase [Streptococcus pneumoniae] emb|CAA13273.1| (AJ232270) D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 123 bits (308), Expect = 3e-27 Identities = 62/145 (42%), Positives = 95/145 (64%), Gaps = 1/145 (0%) Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 AEVE KL P+F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE Sbjct: 4 AEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEV 63 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ Sbjct: 64 GLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKVTMDIPAKISDDVVAVMRQNAETAFR 122 Query: 292 TLGCAGMARVDVFLTPENEVVINEI 316 +G G++R D F T + E+ +NE+ Sbjct: 123 AIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAA13256.1| (AJ232253) D-alanine D-alanine ligase [Streptococcus pneumoniae] emb|CAB64456.1| (AJ387988) D-alanine--D-alanine ligase [Streptococcus oralis] emb|CAB64498.1| (AJ387985) D-alanine--D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 123 bits (308), Expect = 3e-27 Identities = 62/145 (42%), Positives = 96/145 (65%), Gaps = 1/145 (0%) Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 AEVE KL P+F KP+N GSSVG+SK ++E+ A++LAF +D +V+VEQG+ REIE Sbjct: 4 AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALELAFRYDSRVLVEQGVNAREIEV 63 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ Sbjct: 64 GLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETAFR 122 Query: 292 TLGCAGMARVDVFLTPENEVVINEI 316 +G G++R D F T + E+ +NE+ Sbjct: 123 AIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAA13261.1| (AJ232258) D-alanine D-alanine ligase [Streptococcus pneumoniae] emb|CAA13277.1| (AJ232274) D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 123 bits (308), Expect = 3e-27 Identities = 62/145 (42%), Positives = 95/145 (64%), Gaps = 1/145 (0%) Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 AEVE KL P+F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE Sbjct: 4 AEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEV 63 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ Sbjct: 64 GLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNN-ITMDIPAKISDDVVAVMRQNAETAFR 122 Query: 292 TLGCAGMARVDVFLTPENEVVINEI 316 +G G++R D F T + E+ +NE+ Sbjct: 123 AIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAB60645.1| (AJ252532) D-ala,D-ala ligase [Streptococcus pneumoniae] emb|CAB64500.1| (AJ387987) D-alanine--D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 123 bits (308), Expect = 3e-27 Identities = 61/145 (42%), Positives = 97/145 (66%), Gaps = 1/145 (0%) Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 AEVE KL P+F KP+N GSSVG+SK ++E+ A++LAF++D +++VEQG+ REIE Sbjct: 4 AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALELAFQYDSRILVEQGVNAREIEV 63 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ Sbjct: 64 GLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETAFR 122 Query: 292 TLGCAGMARVDVFLTPENEVVINEI 316 +G G++R D F T + E+ +NE+ Sbjct: 123 AIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAA13276.1| (AJ232273) D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 123 bits (308), Expect = 4e-27 Identities = 62/145 (42%), Positives = 95/145 (64%), Gaps = 1/145 (0%) Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 AEVE KL P+F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE Sbjct: 4 AEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEV 63 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ Sbjct: 64 GLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKVTMDIPAKISDDVVAVMRQNAEAAFR 122 Query: 292 TLGCAGMARVDVFLTPENEVVINEI 316 +G G++R D F T + E+ +NE+ Sbjct: 123 AIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAB16962.1| (Z99837) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB16969.1| (Z99844) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB16970.1| (Z99845) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17003.1| (Z99878) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17018.1| (Z99893) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17019.1| (Z99894) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAA13248.1| (AJ232245) D-alanine D-alanine ligase [Streptococcus pneumoniae] emb|CAA13257.1| (AJ232254) D-alanine D-alanine ligase [Streptococcus pneumoniae] emb|CAA13263.1| (AJ232260) D-alanine D-alanine ligase [Streptococcus pneumoniae] emb|CAA13270.1| (AJ232267) D-alanine D-alanine ligase [Streptococcus pneumoniae] emb|CAA13271.1| (AJ232268) D-alanine D-alanine ligase [Streptococcus pneumoniae] emb|CAA13275.1| (AJ232272) D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 122 bits (307), Expect = 4e-27 Identities = 62/145 (42%), Positives = 95/145 (64%), Gaps = 1/145 (0%) Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 AEVE KL P+F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE Sbjct: 4 AEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEV 63 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ Sbjct: 64 GLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETAFR 122 Query: 292 TLGCAGMARVDVFLTPENEVVINEI 316 +G G++R D F T + E+ +NE+ Sbjct: 123 AIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAA13579.1| (AJ233886) D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 146 Score = 122 bits (307), Expect = 4e-27 Identities = 62/144 (43%), Positives = 95/144 (65%), Gaps = 1/144 (0%) Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 AEVE KL P+F KP+N GSSVG+SK ++E+ A+ LAF++D +V+VEQG+ REIE Sbjct: 4 AEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKLAFQYDSRVLVEQGVNAREIEV 63 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ Sbjct: 64 GLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETAFR 122 Query: 292 TLGCAGMARVDVFLTPENEVVINE 315 +G G++R D F T + E+ +NE Sbjct: 123 AIGGLGLSRCDFFYTDKEEIFLNE 146 >emb|CAA13581.1| (AJ233888) D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 146 Score = 122 bits (307), Expect = 4e-27 Identities = 62/144 (43%), Positives = 95/144 (65%), Gaps = 1/144 (0%) Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 AEVE KL P+F KP+N GSSVG+SK ++E+ A++LAF +D +V+VEQG+ REIE Sbjct: 4 AEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQALELAFRYDSRVLVEQGVNAREIEV 63 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ Sbjct: 64 GLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETAFR 122 Query: 292 TLGCAGMARVDVFLTPENEVVINE 315 +G G++R D F T + E+ +NE Sbjct: 123 AIGGLGLSRCDFFYTDKGEIFLNE 146 >emb|CAA13247.1| (AJ232244) D-alanine D-alanine ligase [Streptococcus pneumoniae] emb|CAA13266.1| (AJ232263) D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 122 bits (307), Expect = 4e-27 Identities = 62/145 (42%), Positives = 96/145 (65%), Gaps = 1/145 (0%) Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 AEVE KL P+F KP+N GSSVG+SK ++E+ A+ LAF++D +V+VEQG+ REIE Sbjct: 4 AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKLAFQYDSRVLVEQGVNAREIEV 63 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ Sbjct: 64 GLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETAFR 122 Query: 292 TLGCAGMARVDVFLTPENEVVINEI 316 +G G++R D F T + E+ +NE+ Sbjct: 123 AIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAA13255.1| (AJ232252) D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 122 bits (307), Expect = 4e-27 Identities = 62/145 (42%), Positives = 96/145 (65%), Gaps = 1/145 (0%) Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 AEVE KL P+F KP+N GSSVG+SK ++E+ A+ LAF++D +V+VEQG+ REIE Sbjct: 4 AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKLAFQYDSRVLVEQGVNAREIEV 63 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ Sbjct: 64 GLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAIMRQNAETAFR 122 Query: 292 TLGCAGMARVDVFLTPENEVVINEI 316 +G G++R D F T + E+ +NE+ Sbjct: 123 AIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAB64497.1| (AJ387984) D-alanine--D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 122 bits (307), Expect = 5e-27 Identities = 62/145 (42%), Positives = 95/145 (64%), Gaps = 1/145 (0%) Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 AEVE KL P+F KP+N GSSVG+SK ++E+ A+ LAF++D +V+VEQG+ REIE Sbjct: 4 AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKLAFQYDSRVLVEQGVNAREIEV 63 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 +LGN + +++ GE+V FY YD KYID + + +PA I ++ +R A A++ Sbjct: 64 GLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKIGDDVVAVMRQNAETAFR 122 Query: 292 TLGCAGMARVDVFLTPENEVVINEI 316 +G G++R D F T + E+ +NE+ Sbjct: 123 AIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAB16982.1| (Z99857) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17005.1| (Z99880) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17027.1| (Z99902) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAA13265.1| (AJ232262) D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 122 bits (306), Expect = 5e-27 Identities = 61/145 (42%), Positives = 95/145 (65%), Gaps = 1/145 (0%) Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 AEVE KL P+F KP+N GSSVG+S+ ++E+ A+ LAF +D +V+VEQG+ REIE Sbjct: 4 AEVEEKLAYPVFTKPSNMGSSVGISRSENQEELRQALKLAFRYDSRVLVEQGVNAREIEV 63 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ Sbjct: 64 GLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKVTMDIPAKISDDVVAVMRQNAETAFR 122 Query: 292 TLGCAGMARVDVFLTPENEVVINEI 316 +G G++R D F T + E+ +NE+ Sbjct: 123 AIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAA13252.1| (AJ232249) D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 122 bits (306), Expect = 5e-27 Identities = 62/145 (42%), Positives = 95/145 (64%), Gaps = 1/145 (0%) Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 AEVE KL P+F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE Sbjct: 4 AEVEEKLAYPVFAKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEV 63 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ Sbjct: 64 GLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETAFR 122 Query: 292 TLGCAGMARVDVFLTPENEVVINEI 316 +G G++R D F T + E+ +NE+ Sbjct: 123 AIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAA13245.1| (AJ232242) D-alanine D-alanine ligase [Streptococcus mitis] Length = 147 Score = 122 bits (306), Expect = 5e-27 Identities = 62/145 (42%), Positives = 96/145 (65%), Gaps = 1/145 (0%) Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 AEVE KL P+F KP+N GSSVG+SK ++E+ A+ LAF++D +V+VEQG+ REIE Sbjct: 4 AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKLAFQYDSRVLVEQGVNAREIEV 63 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ Sbjct: 64 GLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVVVMRQNAETAFR 122 Query: 292 TLGCAGMARVDVFLTPENEVVINEI 316 +G G++R D F T + E+ +NE+ Sbjct: 123 AIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAA94438.1| (Z70527) D-alanine:D-alanine ligase-related protein [Streptococcus bovis] Length = 211 Score = 122 bits (306), Expect = 5e-27 Identities = 67/183 (36%), Positives = 106/183 (57%), Gaps = 10/183 (5%) Query: 99 VDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPF 158 +DV FP++HG GEDG++QG+ ++ +P+VG D+ +SAACMDK + L ++AG+ + F Sbjct: 32 IDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEF 91 Query: 159 ITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKV 218 + + ++ L P+FVKPA GSS GV+KV E+ A++ A ++D K+ Sbjct: 92 QMIDKGDKPE------AGTLTYPVFVKPARSGSSFGVTKVNGTEELNAAIEAAGQYDGKI 145 Query: 219 IVEQGIKGREIECAVLGN-DNPQASTCGEIVLTSDFYAYDTKYIDEDG---AKVVVPAAI 274 ++EQ I G E+ CAV+GN D+ +I L+ + + E G A + VPA I Sbjct: 146 LIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADI 205 Query: 275 APE 277 E Sbjct: 206 PVE 208 >emb|CAB60641.1| (AJ252528) D-ala,D-ala ligase [Streptococcus pneumoniae] emb|CAB64490.1| (AJ387977) D-alanine--D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 122 bits (306), Expect = 5e-27 Identities = 62/145 (42%), Positives = 96/145 (65%), Gaps = 1/145 (0%) Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 AEVE KL P+F KP+N GSSVG+SK ++E+ A++LAF +D +V+VEQG+ REIE Sbjct: 4 AEVEEKLVYPVFTKPSNMGSSVGISKSENQEELRQALELAFRYDSRVLVEQGVNAREIEV 63 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ Sbjct: 64 GLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETAFR 122 Query: 292 TLGCAGMARVDVFLTPENEVVINEI 316 +G G++R D F T + E+ +NE+ Sbjct: 123 AIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAB16964.1| (Z99839) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB16967.1| (Z99842) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17002.1| (Z99877) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17026.1| (Z99901) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAA13268.1| (AJ232265) D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 122 bits (306), Expect = 5e-27 Identities = 62/145 (42%), Positives = 95/145 (64%), Gaps = 1/145 (0%) Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 AEVE KL P+F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE Sbjct: 4 AEVEEKLVYPVFTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEV 63 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ Sbjct: 64 GLLGNSDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETAFR 122 Query: 292 TLGCAGMARVDVFLTPENEVVINEI 316 +G G++R D F T + E+ +NE+ Sbjct: 123 AIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAA13580.1| (AJ233887) D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 146 Score = 122 bits (305), Expect = 6e-27 Identities = 62/144 (43%), Positives = 94/144 (65%), Gaps = 1/144 (0%) Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 AEVE KL P+F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE Sbjct: 4 AEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEV 63 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ Sbjct: 64 GLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETAFR 122 Query: 292 TLGCAGMARVDVFLTPENEVVINE 315 +G G++R D F T + E+ +NE Sbjct: 123 AIGGLGLSRCDFFYTDKGEIFLNE 146 >emb|CAB16963.1| (Z99838) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAA13249.1| (AJ232246) D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 121 bits (304), Expect = 8e-27 Identities = 62/145 (42%), Positives = 95/145 (64%), Gaps = 1/145 (0%) Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 AEVE KL P+F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE Sbjct: 4 AEVEEKLVYPVFTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEV 63 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ Sbjct: 64 GLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETAFR 122 Query: 292 TLGCAGMARVDVFLTPENEVVINEI 316 +G G++R D F T + E+ +NE+ Sbjct: 123 AIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAB16965.1| (Z99840) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17016.1| (Z99891) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAA13264.1| (AJ232261) D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 120 bits (302), Expect = 1e-26 Identities = 62/145 (42%), Positives = 95/145 (64%), Gaps = 1/145 (0%) Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 AEVE KL P+F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE Sbjct: 4 AEVEEKLVYPVFTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEV 63 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ Sbjct: 64 GLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAEIAFR 122 Query: 292 TLGCAGMARVDVFLTPENEVVINEI 316 +G G++R D F T + E+ +NE+ Sbjct: 123 AIGGLGLSRCDFFYTDKGEIFLNEL 147 >ref|NP_421346.1| (NC_002696) D-alanine--D-alanine ligase B [Caulobacter crescentus] gb|AAK24514.1| (AE005922) D-alanine--D-alanine ligase B [Caulobacter crescentus] Length = 324 Score = 119 bits (297), Expect = 6e-26 Identities = 97/265 (36%), Positives = 141/265 (52%), Gaps = 19/265 (7%) Query: 100 DVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFI 159 D++F +HG GEDG +QG+L LP+ S VLASA MDK K +L AG+ + P Sbjct: 67 DMVFNALHGEWGEDGCVQGVLETLKLPYTHSGVLASALAMDKAKAKAVLAAAGVTV-PGG 125 Query: 160 TLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTS------EEQYAIAVDLAFE 213 L NRH+++ V L P VKP +GSSVGV + EE A ++ Sbjct: 126 GLF--NRHDVARDHV---LQPPYVVKPNAEGSSVGVFIIKEGANRPPEEVGAP----SWT 176 Query: 214 FDHKVIVEQGIKGREIECAVLGNDN-PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPA 272 F +V+VE I+G E+ AVLG N P+A +I ++ FY Y+ KY E G+ V+PA Sbjct: 177 FGEEVMVEPYIQGMELAVAVLGESNGPRALAVTDIRASTGFYDYEAKY-SEGGSIHVLPA 235 Query: 273 AIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENE-VVINEINTLPGFTNISMYPKL 331 I + D+ +A A+ LGC G+ R D N+ +V+ E+NT PG T S+ P+ Sbjct: 236 PIPNAVRDRAMRMAELAHTALGCRGVTRSDFRYDDINDLLVLLEVNTQPGMTPTSLAPEQ 295 Query: 332 WQASGLGYTDLITRLIELALERHAA 356 G+ + L+ ++E A R +A Sbjct: 296 ADHVGIPFDQLVLWIVEDAYARCSA 320 >gb|AAF37346.1|AF170807_1 (AF170807) D-alanine:D-alanine ligase [Enterococcus raffinosus] Length = 125 Score = 107 bits (268), Expect = 1e-22 Identities = 55/126 (43%), Positives = 82/126 (64%), Gaps = 1/126 (0%) Query: 191 SSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTCGEIVLT 250 SSVG+++ + E+ A+ A+ +D + +VEQGI REIE AVLGND+ + + GEIV Sbjct: 1 SSVGITRAENREELQNALQEAYRYDSRALVEQGIDAREIEVAVLGNDDVRTTLPGEIVKE 60 Query: 251 SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENE 310 FY Y+ KYID + ++ +PA I E+ K R A AY LG +G++R+D FLT +NE Sbjct: 61 EAFYDYNAKYID-NTIQMAIPANIPEEVMQKARDYAKSAYTMLGGSGLSRIDFFLTNKNE 119 Query: 311 VVINEI 316 + +NE+ Sbjct: 120 LFLNEL 125 >ref|NP_223393.1| (NC_000921) D-ALANINE--D-ALANINE LIGASE [Helicobacter pylori J99] sp|Q9ZLA5|DDL_HELPJ D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||A71903 D-alanine--D-alanine ligase A homolog - Helicobacter pylori (strain J99) gb|AAD06259.1| (AE001499) D-ALANINE--D-ALANINE LIGASE [Helicobacter pylori J99] Length = 347 Score = 107 bits (267), Expect = 2e-22 Identities = 92/327 (28%), Positives = 149/327 (45%), Gaps = 38/327 (11%) Query: 8 IVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHI 67 ++FGG S EHE+S+ SA + + K R + +D+ +++ + SN Sbjct: 5 VLFGGASFEHEISIVSAIAL-KGVLKDRIKYFIF-LDENHYFYLIEESNM---------- 52 Query: 68 ALRPSATSLAQVPGKHEHQLIDAQN--------GQPLPTVDVIFPIVHGTLGEDGSLQGM 119 + AQ+ K LI N G + + ++ +VHG GEDG L + Sbjct: 53 ----HSKYFAQIKEKKLPPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASL 108 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHN----ISFAEVE 175 L + F+G V AS +K +TK +D G+ ++ L NR N I F Sbjct: 109 LEFYRIAFIGPRVEASVLSYNKYLTKLYAKDLGVKALDYVLLNEKNRANALDLIGF---- 164 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVL 234 P VKP+N GSS+GV+ V E++ A+D AFE+ +V++E I+G +E A Sbjct: 165 ---NFPFIVKPSNAGSSLGVNVVKEEKELIYALDSAFEYSKEVLIEPFIQGVKEYNLAGC 221 Query: 235 GNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 + E +F + KY+D K A ++ + ++++ + Y L Sbjct: 222 KIKKGFCFSYVEEPNKQEFLDFKQKYLDFSRTK-APKANLSNALEEQLKENFKKLYNDLF 280 Query: 295 CAGMARVDVFLTPENEVVINEINTLPG 321 + R D F+ ENEV +NEIN +PG Sbjct: 281 DGAIIRCDFFVI-ENEVYLNEINPIPG 306 >ref|NP_281959.1| (NC_002163) putative D-alanine--D-alanine ligase [Campylobacter jejuni] pir||F81351 probable D-alanine--D-alanine ligase (EC 6.3.2.4) Cj0798c [imported] - Campylobacter jejuni (strain NCTC 11168) emb|CAB73063.1| (AL139076) putative D-alanine--D-alanine ligase [Campylobacter jejuni] Length = 346 Score = 107 bits (266), Expect = 3e-22 Identities = 84/330 (25%), Positives = 159/330 (47%), Gaps = 40/330 (12%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 ++ I+FGG S EHE+S+ SA + I++ ++ + D++ +++ Sbjct: 1 MKFAILFGGNSYEHEISIVSAVVLKKVINQ---NLEFIFCDEERRFY------------- 44 Query: 64 PAHI-ALRPSATSLAQVPGKHEHQLIDAQNG--------QPLPTVDVIFPIVHGTLGEDG 114 HI + + ++ + + K E +L Q G + + + ++HG GEDG Sbjct: 45 --HIPSEKMNSKTFSTKAYKKEKELFIKQGGFFSKGFLKENKLECECVINLIHGRDGEDG 102 Query: 115 SLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 + + ++ F+G + AS +K++TK + G+ + T+ R N+++ Sbjct: 103 KIAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTLDY-TILRKNQNS------ 155 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQ---GIKGREIEC 231 + KL P +KPA GSS+G+S V E+ A D+ FEFD+ ++VE+ IK + Sbjct: 156 KEKLSFPCIIKPARLGSSIGISIVKDEKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAG 215 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 ++ ND S E +F ++ KY+ G ++ A ++ E+ +K++ + Y Sbjct: 216 CMI-NDEFVFSIIEE-PKKKEFLDFEQKYLSFSGHNELIEADLSEELKEKLKDSFKKIYN 273 Query: 292 TLGCAGMARVDVFLTPENEVVINEINTLPG 321 L + R D F+ +NE+ +NEIN PG Sbjct: 274 PLFKGALIRCDFFIL-DNEIYLNEINPNPG 302 >ref|NP_207532.1| (NC_000915) D-alanine:D-alanine ligase A (ddlA) [Helicobacter pylori 26695] sp|P56191|DDL_HELPY D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||B64612 D-alanine--D-alanine ligase A homolog - Helicobacter pylori (strain 26695) gb|AAD07784.1| (AE000586) D-alanine:D-alanine ligase A (ddlA) [Helicobacter pylori 26695] Length = 347 Score = 103 bits (257), Expect = 3e-21 Identities = 91/327 (27%), Positives = 144/327 (43%), Gaps = 38/327 (11%) Query: 8 IVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHI 67 ++FGG S EHE+S+ SA + L G+ K D Y + D+ H Sbjct: 5 VLFGGASFEHEISIVSA-------------IALKGVLK-------DRIKYFIFLDENHHF 44 Query: 68 ALRPSATS----LAQVPGKHEHQLIDAQN--------GQPLPTVDVIFPIVHGTLGEDGS 115 L + AQ+ K LI N G + + ++ +VHG GEDG Sbjct: 45 YLIEESNMHSKYFAQIKEKKLPPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGK 104 Query: 116 LQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVE 175 L +L + F+G + AS +K +TK +D G+ + L NR N A Sbjct: 105 LASLLEFYRIAFIGPRIEASVLSYNKYLTKLYAKDLGVKTLDHVLLNEKNRAN---ALDL 161 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVL 234 P +KP N GSS+GV+ V E++ A+D AFE+ +V++E I+G +E A Sbjct: 162 MNFNFPFIIKPNNAGSSLGVNVVKEEKELVYALDGAFEYSKEVLIEPFIQGVKEYNLAGC 221 Query: 235 GNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 + E +F + KY+D K A ++ + ++++ + Y L Sbjct: 222 KIKKDFCFSYVEEPNKQEFLDFKQKYLDFSRNK-APKANLSNALEEQLKENFKKLYNDLF 280 Query: 295 CAGMARVDVFLTPENEVVINEINTLPG 321 + R D F+ +NEV +NEIN +PG Sbjct: 281 DGAIIRCDFFVI-KNEVYLNEINPIPG 306 >ref|NP_444059.1| (NC_000914) Y4sG [Rhizobium sp. NGR234] sp|P55650|Y4SG_RHISN HYPOTHETICAL 37.0 KD PROTEIN Y4SG gb|AAB91846.1| (AE000096) Y4sG [Rhizobium sp. NGR234] Length = 336 Score = 100 bits (250), Expect = 2e-20 Identities = 74/269 (27%), Positives = 123/269 (45%), Gaps = 13/269 (4%) Query: 98 TVDVIFPIVHGTLGED--GSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNI 155 T ++F + G GE + ML +A +P+ GS L DK ++K L+RD+G+ Sbjct: 74 TSGMVFNLAEGIQGEYRFTHVPAMLEMAGVPYTGSSPLGHGLTDDKVISKTLMRDSGVPT 133 Query: 156 APFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAF-EF 214 F + R E L P+ VKP ++ +S G+ V Q AV + ++ Sbjct: 134 PNFSIMRRG-------TESTDDLRFPVVVKPRHEDNSFGLQLVHEPAQLQQAVKMIVTKY 186 Query: 215 DHKVIVEQGIKGREIECAVLGNDNPQASTCGEIVL---TSDFYAYDTKYIDEDGAKVVVP 271 +VE+ I GREI A+LGN + E L + ++ KY+ P Sbjct: 187 AQDALVEEYIDGREIHVALLGNQEVEVLPMVEFELGEHEAPLLTWEAKYLAAVQPPKTCP 246 Query: 272 AAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKL 331 A I ++ +R I+V ++ C ARVD+ L + + EIN++PG + S Y Sbjct: 247 AKIESKLATLLRDISVATFRACQCRDYARVDLRLDRSGQPFVLEINSMPGLSTHSAYVLA 306 Query: 332 WQASGLGYTDLITRLIELALERHAADNAL 360 +G Y+ LI ++++A R+ + L Sbjct: 307 AMTAGHSYSSLINGILDVAHRRYFGNGIL 335 >gb|AAD20832.1| (AF125320) D-alanine:D-alanine ligase B homolog [Bartonella bacilliformis] Length = 172 Score = 98.2 bits (243), Expect = 1e-19 Identities = 59/170 (34%), Positives = 99/170 (57%), Gaps = 9/170 (5%) Query: 184 VKPANQGSSVGVSKVTSEEQYAI--AVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 +KP +GSS GV V S+E + ++ + +D +++VE+ + GRE+ CAVLG++ Sbjct: 1 IKPIREGSSFGVVIVGSDETMPLHDIMNNEWVYDDEIMVEKYVPGRELTCAVLGDE--VL 58 Query: 242 STCGEIVLTS--DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 C EIV FY YD+KY G+ + PA ++ I ++ +++ A+Q +GC G++ Sbjct: 59 DVC-EIVPKECFQFYDYDSKY-KSGGSLHICPAKLSSNIYQNVQRMSLAAHQAIGCRGVS 116 Query: 300 RVDVFLTPEN-EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 R D E E++ EINT PG T+ S+ P + +ASG Y D++ ++E Sbjct: 117 RSDFRFNEETGELIWLEINTQPGMTSTSLVPDIAKASGRTYGDIVKWIVE 166 >ref|NP_187496.1| (NC_003074) unknown protein [Arabidopsis thaliana] gb|AAF07838.1|AC010871_14 (AC010871) unknown protein [Arabidopsis thaliana] Length = 515 Score = 97.1 bits (240), Expect = 3e-19 Identities = 99/371 (26%), Positives = 154/371 (40%), Gaps = 43/371 (11%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 + LRVG++ GG SAE +SL SA++++D I +V ID + ++ N Sbjct: 76 KSLRVGLICGGPSAERGISLNSARSVLDHIQGDGINVSCYYIDPDLKAFAISSAQVYSNT 135 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 L A + + EH L+ A VD++FP++HG GEDG +Q +L Sbjct: 136 PSDFDFKLESLAQGFSSLSELAEH-LVSA--------VDIVFPVIHGRFGEDGGIQELLE 186 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAP--FITLTRANRHNISFAEVESKLG 179 N+PFVG+ DK L++ G P + T ++ I+ +++L Sbjct: 187 SHNIPFVGTGSRECFRAFDKYEASLELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLD 246 Query: 180 LPL---FVKPANQGSSVGVS-KVTSEEQYAIAVDLAFE-FDHKVIVEQGIK-GREIECAV 233 L + VKPA GSS+GV + A +L E D +V+VE I+ E V Sbjct: 247 LEMGKVVVKPAKAGSSIGVKVAFGVNDSIKKATELILEGIDDRVVVEVFIEDAYEFTAIV 306 Query: 234 LGNDNPQASTCGEIVLT----------------SDFYAYDTKYIDEDGAKVVVPAAIAPE 277 L D S C +VL + + Y KY+ P Sbjct: 307 L--DVGSGSVCHPVVLMPTEVQLQFHGIGDPKENAIFDYRRKYLPTQQVTYHTPPRFPIH 364 Query: 278 INDKIRAIAVQAYQTLGCAGMARVD-VFLTPENEVVINEINTLPGFTNISMYPKLWQASG 336 + IR A +Q LG AR+D +L P + N + + G S L+Q + Sbjct: 365 VIKSIREEASLIFQKLGLRDFARIDGWYLAPNS----NLSSPISGMEQTSF---LFQQAS 417 Query: 337 LGYTDLITRLI 347 D++T +I Sbjct: 418 KVIKDIVTLMI 428 >gb|AAB49635.1| (U72705) vancomycin resistance protein [Enterococcus casseliflavus] Length = 126 Score = 82.0 bits (201), Expect = 7e-15 Identities = 48/121 (39%), Positives = 71/121 (58%), Gaps = 2/121 (1%) Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT-RANRHNISFAEVESKLGLPLF 183 LP+VG V ASA CM+K + + G+ AP I LT +AN+ + A +++ G P+F Sbjct: 5 LPYVGCGVAASALCMNKWLLHQAAEAIGVQSAPTILLTNQANQQDQIEAFIQTH-GFPVF 63 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 KP GSS G++KVT E+ A A+ AF + V++++ I G EI C +LGND+ Sbjct: 64 FKPNEAGSSKGITKVTCVEEIASALKEAFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGA 123 Query: 244 C 244 C Sbjct: 124 C 124 >gb|AAF37345.1|AF170806_1 (AF170806) D-alanine:D-alanine ligase [Enterococcus mundtii] Length = 105 Score = 80.9 bits (198), Expect = 2e-14 Identities = 43/104 (41%), Positives = 67/104 (64%), Gaps = 1/104 (0%) Query: 191 SSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTCGEIVLT 250 SSVG++K + E+ A+ A+++D + IVEQGI+ REIE AVLGN++ + + GE+V Sbjct: 1 SSVGITKAENREELQNALATAYQYDSRAIVEQGIEAREIEVAVLGNEDVRTTLPGEVVKD 60 Query: 251 SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 FY YD KYI+ + ++ +PA + E++ K + A AY LG Sbjct: 61 VAFYDYDAKYIN-NRIEMQIPAEVPEEVHQKAQEYAKLAYTMLG 103 >gb|AAB49637.1| (U72706) vancomycin resistance protein [Enterococcus flavescens] Length = 123 Score = 79.7 bits (195), Expect = 4e-14 Identities = 47/121 (38%), Positives = 69/121 (56%), Gaps = 2/121 (1%) Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT-RANRHNISFAEVESKLGLPLF 183 LP+VG V SA CM+K + + G+ AP I LT +AN+ A +++ G P+F Sbjct: 3 LPYVGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTH-GFPVF 61 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 KP GSS G++KVT E+ A A+ AF + V++++ I G EI C +LGND+ Sbjct: 62 FKPNEAGSSKGITKVTCVEEIASALKEAFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGA 121 Query: 244 C 244 C Sbjct: 122 C 122 >dbj|BAB64428.1| (AB070704) vancomycin resistance protein C-2 [Enterococcus casseliflavus] Length = 115 Score = 77.4 bits (189), Expect = 2e-13 Identities = 41/105 (39%), Positives = 59/105 (56%), Gaps = 1/105 (0%) Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 G P+F KP GSS G++KVT E+ A A+ AF + V++++ I G EI C +LGND+ Sbjct: 7 GFPVFFKPNEAGSSKGITKVTCVEEIAPALKEAFAYCSAVLLQKNIAGVEIGCGILGNDS 66 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIR 283 C I L F+ Y+ KY AK+ VPA + I K++ Sbjct: 67 LTVGACDAISLVDGFFDYEEKY-QLISAKITVPAPLPETIETKVK 110 >dbj|BAB64425.1| (AB070701) vancomycin resistance protein C-2 [Enterococcus casseliflavus] Length = 115 Score = 76.6 bits (187), Expect = 3e-13 Identities = 40/105 (38%), Positives = 59/105 (56%), Gaps = 1/105 (0%) Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 G P+F KP GSS G++KVT E+ A A+ AF + V++++ I G EI C +LGND+ Sbjct: 7 GFPVFFKPNEAGSSKGITKVTCVEEIAPALKEAFAYCSAVLLQKNIAGVEIGCGILGNDS 66 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIR 283 C I L F+ Y+ KY AK+ VPA + I +++ Sbjct: 67 LTVGACDAISLVDGFFDYEEKY-QLISAKITVPAPLPETIETRVK 110 >dbj|BAB64423.1| (AB070699) vancomycin resistance protein C-2 [Enterococcus casseliflavus] Length = 115 Score = 76.3 bits (186), Expect = 5e-13 Identities = 40/105 (38%), Positives = 59/105 (56%), Gaps = 1/105 (0%) Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 G P+F KP GSS G++KVT E+ A A+ AF + V++++ I G EI C +LGND+ Sbjct: 7 GFPVFFKPNEAGSSKGITKVTCVEEIAPALKEAFAYCSAVLLQKNIAGVEIGCGILGNDS 66 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIR 283 C I L F+ ++ KY AK+ VPA + I K++ Sbjct: 67 LTVGACDAISLVEGFFDFEEKY-QLISAKITVPAPLPETIETKVK 110 >dbj|BAB64420.1| (AB070696) vancomycin resistance protein C-2 [Enterococcus casseliflavus] dbj|BAB64421.1| (AB070697) vancomycin resistance protein C-2 [Enterococcus casseliflavus] dbj|BAB64424.1| (AB070700) vancomycin resistance protein C-2 [Enterococcus casseliflavus] dbj|BAB64429.1| (AB070705) vancomycin resistance protein C-2 [Enterococcus casseliflavus] Length = 115 Score = 75.9 bits (185), Expect = 5e-13 Identities = 40/105 (38%), Positives = 59/105 (56%), Gaps = 1/105 (0%) Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 G P+F KP GSS G++KVT E+ A A+ AF + V++++ I G EI C +LGND+ Sbjct: 7 GFPVFFKPNEAGSSKGITKVTCVEEIAPALKEAFAYCSAVLLQKNIAGVEIGCGILGNDS 66 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIR 283 C I L F+ ++ KY AK+ VPA + I K++ Sbjct: 67 LTVGACDAISLVDGFFDFEEKY-QLISAKITVPAPLPETIETKVK 110 >dbj|BAB64426.1| (AB070702) vancomycin resistance protein C-2 [Enterococcus casseliflavus] Length = 115 Score = 75.9 bits (185), Expect = 6e-13 Identities = 40/105 (38%), Positives = 59/105 (56%), Gaps = 1/105 (0%) Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 G P+F KP GSS G++KVT E+ A A+ AF + V++++ I G EI C +LGND+ Sbjct: 7 GFPVFFKPNEAGSSKGITKVTCVEEIAPALKEAFAYCSAVLLQKNIAGVEIGCGILGNDS 66 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIR 283 C I L F+ ++ KY AK+ VPA + I K++ Sbjct: 67 LTVGACDAISLVYGFFDFEEKY-QLISAKITVPAPLPETIETKVK 110 >sp|P35660|DDL_ANACE D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||PQ0272 D-alanine--D-alanine ligase (EC 6.3.2.4) - Anaplasma centrale (fragment) gb|AAA22065.1| (M80425) D-alanine:D-alanine ligase [Anaplasma centrale] Length = 205 Score = 75.1 bits (183), Expect = 1e-12 Identities = 62/233 (26%), Positives = 103/233 (43%), Gaps = 54/233 (23%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 L + ++ GG S E EVSL K I DA+ + ++ ++++ + Sbjct: 13 LSIAVLCGGSSPEREVSLAGGKRIADALGRLGHRAAVVDLNRESAHQL------------ 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 LA P D+++ +HG GEDG G+L + Sbjct: 61 ------------LAMAP-------------------DLVYNALHGGQGEDGCASGLLDIL 89 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 L + S V AS+ MDK +TK +L+ G++ F LT+ +S EV + P Sbjct: 90 GLAYTHSRVAASSVGMDKVLTKHVLKSLGIDFPEFSVLTK--EEVLSAKEV---MPYPFV 144 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH---KVIVEQGIKGREIECAV 233 +KP GS++GV + S +Y +DL+ D +++VE+ I G+E+ AV Sbjct: 145 IKPICGGSTIGVHAIFSRSEY---LDLSVHADALEGRMLVEEYIPGQEVHTAV 194 >dbj|BAB64422.1| (AB070698) vancomycin resistance protein C-2 [Enterococcus casseliflavus] dbj|BAB64427.1| (AB070703) vancomycin resistance protein C-2 [Enterococcus casseliflavus] Length = 115 Score = 73.6 bits (179), Expect = 3e-12 Identities = 39/103 (37%), Positives = 58/103 (55%), Gaps = 1/103 (0%) Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+F KP GSS G++KVT E+ A A+ AF + V++++ I G EI C +LGND+ Sbjct: 9 PVFFKPNEAGSSKGITKVTCVEEIAPALKEAFAYCSAVLLQKNIAGVEIGCGILGNDSLT 68 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIR 283 C I L F+ ++ KY AK+ VPA + I K++ Sbjct: 69 VGACDAISLVEGFFDFEEKY-QLISAKITVPAPLPETIETKVK 110 >gb|AAB62172.1| (U94524) vancomycin resistance protein C2 [Enterococcus casseliflavus] Length = 119 Score = 73.2 bits (178), Expect = 4e-12 Identities = 42/116 (36%), Positives = 59/116 (50%) Query: 132 VLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGS 191 V ASA CM+K + + G+ AP I LT + G P+F KP GS Sbjct: 3 VAASALCMNKWLLHQAAATIGVQSAPTILLTNQDNQQQQIEAFIQTHGFPVFFKPNEAGS 62 Query: 192 SVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTCGEI 247 S G++KVT E+ A A+ AF + V++++ I G EI C +LGND+ C I Sbjct: 63 SKGITKVTCVEEIAPALKEAFAYCSAVLLQKNIAGVEIGCGILGNDSLTVGACDAI 118 >gb|AAB62171.1| (U94523) vancomycin resistance protein C2 [Enterococcus casseliflavus] Length = 120 Score = 72.4 bits (176), Expect = 7e-12 Identities = 45/119 (37%), Positives = 66/119 (54%), Gaps = 2/119 (1%) Query: 132 VLASAACMDKDVTKRLLRDAGLNIAPFITLT-RANRHNISFAEVESKLGLPLFVKPANQG 190 V SA CM+K + + G+ AP I LT +AN+ A +++ G P+F KP G Sbjct: 3 VAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTH-GFPVFFKPNEAG 61 Query: 191 SSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTCGEIVL 249 SS G++KVT E+ A A+ AF + V++++ I G EI C +LGND+ C I L Sbjct: 62 SSKGITKVTCVEEIASALKEAFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGACDAISL 120 >gb|AAB62173.1| (U94525) vancomycin resistance protein C2 [Enterococcus casseliflavus] Length = 122 Score = 72.0 bits (175), Expect = 8e-12 Identities = 45/119 (37%), Positives = 66/119 (54%), Gaps = 2/119 (1%) Query: 132 VLASAACMDKDVTKRLLRDAGLNIAPFITLT-RANRHNISFAEVESKLGLPLFVKPANQG 190 V SA CM+K + + G+ AP I LT +AN+ A +++ G P+F KP G Sbjct: 3 VAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTH-GFPVFFKPNEAG 61 Query: 191 SSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTCGEIVL 249 SS G++KVT E+ A A+ AF + V++++ I G EI C +LGND+ C I L Sbjct: 62 SSKGITKVTCVEEIASALKEAFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGACDAISL 120 >gb|AAB62170.1| (U94522) vancomycin resistance protein C2 [Enterococcus casseliflavus] Length = 117 Score = 70.9 bits (172), Expect = 2e-11 Identities = 43/114 (37%), Positives = 64/114 (55%), Gaps = 2/114 (1%) Query: 132 VLASAACMDKDVTKRLLRDAGLNIAPFITLT-RANRHNISFAEVESKLGLPLFVKPANQG 190 V SA CM+K + + G+ AP I LT +AN+ A +++ G P+F KP G Sbjct: 3 VAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTH-GFPVFFKPNEAG 61 Query: 191 SSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 SS G++KVT E+ A A+ AF + V++++ I G EI C +LGND+ C Sbjct: 62 SSKGITKVTCVEEIASALKKAFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGAC 115 >gb|AAB62169.1| (U94521) vancomycin resistance protein C2 [Enterococcus casseliflavus] Length = 117 Score = 70.1 bits (170), Expect = 3e-11 Identities = 43/114 (37%), Positives = 64/114 (55%), Gaps = 2/114 (1%) Query: 132 VLASAACMDKDVTKRLLRDAGLNIAPFITL-TRANRHNISFAEVESKLGLPLFVKPANQG 190 V ASA CM+K + + G+ AP I L +AN+ A +++ G P+F KP G Sbjct: 3 VAASALCMNKWLLHQAAAAIGVQSAPTILLINQANQQEQIEAFIQTH-GFPVFFKPNEAG 61 Query: 191 SSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 SS G++KVT E+ A A+ AF + V++++ I G EI C +LGND+ C Sbjct: 62 SSKGITKVTCVEEIASALKEAFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGAC 115 >ref|NP_187495.1| (NC_003074) hypothetical protein [Arabidopsis thaliana] gb|AAF07839.1|AC010871_15 (AC010871) hypothetical protein [Arabidopsis thaliana] Length = 269 Score = 64.3 bits (155), Expect = 2e-09 Identities = 44/116 (37%), Positives = 63/116 (53%), Gaps = 10/116 (8%) Query: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDA---GLN-IAP 157 +F VHG +GEDG+LQG+L + + G VLAS CMDK +T + L + G++ I+ Sbjct: 43 VFIAVHGGIGEDGTLQGLLEDEGVSYTGPGVLASRTCMDKVMTSQALSNLSEFGIHTISK 102 Query: 158 FITLTRANRHNISFAEVESKL-----GLPLFVKPANQGSSVGVSKVTSEEQYAIAV 208 + T H +F V +L L L VKPA G S GV+++ S E A+ V Sbjct: 103 DVKRTEDIMHE-TFPNVWDELIKKLQCLTLCVKPAKDGCSTGVARLCSSEDLAVYV 157 >pir||S62738 D-alanylalanine ligase homolog - Thermotoga maritima (fragment) gb|AAA68950.1| (U27841) unknown [Thermotoga maritima] Length = 128 Score = 62.8 bits (151), Expect = 5e-09 Identities = 39/146 (26%), Positives = 65/146 (43%), Gaps = 42/146 (28%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +RV ++ GG S E E+SL+S + + A++K ++ + + + ++L D Sbjct: 11 VRVALLMGGVSREREISLRSGERVKKALEKLGYEHTVFDVRE----------DFLKKVDQ 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 L + DV+F ++HGT GEDG+LQ +L Sbjct: 61 --------------------------------LKSFDVVFNVLHGTFGEDGTLQAILDFL 88 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLR 149 + + GSD +S C DK VT R L+ Sbjct: 89 GIRYTGSDAFSSMICFDKLVTYRFLK 114 >emb|CAC35265.1| (AJ290363) D-alanin-D-alanin ligase [Campylobacter jejuni] Length = 160 Score = 62.4 bits (150), Expect = 6e-09 Identities = 46/169 (27%), Positives = 84/169 (49%), Gaps = 12/169 (7%) Query: 128 VGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187 +G + AS +K++TK + G+ + T+ R N+++ + KL P +KPA Sbjct: 1 IGPRLEASVLSFNKELTKLYAKSVGVKTLDY-TMLRKNQNS------KEKLSFPCIIKPA 53 Query: 188 NQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQ---GIKGREIECAVLGNDNPQASTC 244 GSS+G+S V E+ A D+ FEFD+ ++VE+ IK + ++ ND S Sbjct: 54 RLGSSIGISIVKDEKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMI-NDEFVFSII 112 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 E +F ++ KY+ G ++ A ++ E+ +K++ + Y L Sbjct: 113 EE-PKKKEFLDFEQKYLSFSGHNELIEANLSEELKEKLKDSFKKIYNPL 160 >emb|CAC35260.1| (AJ290358) D-alanin-D-alanin ligase [Campylobacter jejuni] Length = 160 Score = 62.4 bits (150), Expect = 6e-09 Identities = 46/169 (27%), Positives = 84/169 (49%), Gaps = 12/169 (7%) Query: 128 VGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187 +G + AS +K++TK + G+ + T+ R N+++ + KL P +KPA Sbjct: 1 IGPRLEASVLSFNKELTKLYAKSVGVKTLDY-TMLRKNQNS------KEKLNFPCIIKPA 53 Query: 188 NQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQ---GIKGREIECAVLGNDNPQASTC 244 GSS+G+S V E+ A D+ FEFD+ ++VE+ IK + ++ ND S Sbjct: 54 RLGSSIGISIVKDEKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMI-NDEFVFSII 112 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 E +F ++ KY+ G ++ A ++ E+ +K++ + Y L Sbjct: 113 EE-PKKKEFLDFEQKYLSFSGHNELIEANLSEELKEKLKDSFKKIYNPL 160 >emb|CAC35258.1| (AJ290356) D-alanin-D-alanin ligase [Campylobacter jejuni] Length = 160 Score = 62.4 bits (150), Expect = 7e-09 Identities = 46/169 (27%), Positives = 84/169 (49%), Gaps = 12/169 (7%) Query: 128 VGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187 +G + AS +K++TK + G+ + T+ R N+++ + KL P +KPA Sbjct: 1 IGPRLEASVLSFNKELTKLYAKSVGVKTLDY-TMLRKNQNS------KEKLSFPCIIKPA 53 Query: 188 NQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQ---GIKGREIECAVLGNDNPQASTC 244 GSS+G+S V E+ A D+ FEFD+ ++VE+ IK + ++ ND S Sbjct: 54 RLGSSIGISIVKDEKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMI-NDEFVFSII 112 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 E +F ++ KY+ G ++ A ++ E+ +K++ + Y L Sbjct: 113 EE-PKKKEFLDFEQKYLSFSGHNELIEADLSKELKEKLKDSFKKIYNPL 160 >emb|CAC35262.1| (AJ290360) D-alanin-D-alanin ligase [Campylobacter jejuni] Length = 160 Score = 62.0 bits (149), Expect = 8e-09 Identities = 46/169 (27%), Positives = 84/169 (49%), Gaps = 12/169 (7%) Query: 128 VGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187 +G + AS +K++TK + G+ + T+ R N+++ + KL P +KPA Sbjct: 1 IGPRLEASVLSFNKELTKLYAKSVGVKTLDY-TMLRKNQNS------KEKLSFPCIIKPA 53 Query: 188 NQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQ---GIKGREIECAVLGNDNPQASTC 244 GSS+G+S V E+ A D+ FEFD+ ++VE+ IK + ++ ND S Sbjct: 54 RLGSSIGISIVKDEKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMI-NDEFVFSII 112 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 E +F ++ KY+ G ++ A ++ E+ +K++ + Y L Sbjct: 113 EE-PKKKEFLDFEQKYLSFSGHNELIEADLSEELKEKLKDSFKKIYNPL 160 >emb|CAC35254.1| (AJ290352) D-alanin-D-alanin ligase [Campylobacter jejuni] emb|CAC35257.1| (AJ290355) D-alanin-D-alanin ligase [Campylobacter jejuni] Length = 160 Score = 62.0 bits (149), Expect = 8e-09 Identities = 46/169 (27%), Positives = 84/169 (49%), Gaps = 12/169 (7%) Query: 128 VGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187 +G + AS +K++TK + G+ + T+ R N+++ + KL P +KPA Sbjct: 1 IGPRLEASVLSFNKELTKLYAKSVGVKTLDY-TMLRKNQNS------KEKLNFPCIIKPA 53 Query: 188 NQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQ---GIKGREIECAVLGNDNPQASTC 244 GSS+G+S V E+ A D+ FEFD+ ++VE+ IK + ++ ND S Sbjct: 54 RLGSSIGISIVKDEKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMI-NDEFVFSII 112 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 E +F ++ KY+ G ++ A ++ E+ +K++ + Y L Sbjct: 113 EE-PKKKEFLDFEQKYLSFSGHNELIEADLSEELKEKLKDSFKKIYNPL 160 >emb|CAC35255.1| (AJ290353) D-alanin-D-alanin ligase [Campylobacter jejuni] Length = 160 Score = 62.0 bits (149), Expect = 9e-09 Identities = 46/169 (27%), Positives = 84/169 (49%), Gaps = 12/169 (7%) Query: 128 VGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187 +G + AS +K++TK + G+ + T+ R N+++ + KL P +KPA Sbjct: 1 IGPRLEASVLSFNKELTKLYAKSVGVKTLDY-TILRKNQNS------KEKLSFPCIIKPA 53 Query: 188 NQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQ---GIKGREIECAVLGNDNPQASTC 244 GSS+G+S V E+ A D+ FEFD+ ++VE+ IK + ++ ND S Sbjct: 54 RLGSSIGISIVKDEKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMI-NDEFVFSII 112 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 E +F ++ KY+ G ++ A ++ E+ +K++ + Y L Sbjct: 113 EE-PKKKEFLDFEQKYLSFSGHNELIEADLSEELKEKLKDSFKKIYNPL 160 >emb|CAC35259.1| (AJ290357) D-alanin-D-alanin ligase [Campylobacter jejuni] Length = 160 Score = 61.2 bits (147), Expect = 1e-08 Identities = 46/169 (27%), Positives = 83/169 (48%), Gaps = 12/169 (7%) Query: 128 VGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187 +G + AS +K++TK + G+ + T+ R N+++ + KL P +KPA Sbjct: 1 IGPRLEASVLSFNKELTKLYAKSVGVKTLDY-TMLRKNQNS------KEKLNFPCIIKPA 53 Query: 188 NQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVE---QGIKGREIECAVLGNDNPQASTC 244 GSS+G+S V E+ A D+ FEFD+ ++VE IK + ++ ND S Sbjct: 54 RLGSSIGISIVKDEKDLEYAKDVGFEFDNDLVVEDFKNNIKEYNLAGCMI-NDEFVFSII 112 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 E +F ++ KY+ G ++ A ++ E+ +K++ + Y L Sbjct: 113 EE-PKKKEFLDFEQKYLSFSGHNELIEADLSEELKEKLKDSFKKIYNPL 160 >emb|CAC35261.1| (AJ290359) D-alanin-D-alanin ligase [Campylobacter jejuni] Length = 160 Score = 60.8 bits (146), Expect = 2e-08 Identities = 46/169 (27%), Positives = 83/169 (48%), Gaps = 12/169 (7%) Query: 128 VGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187 +G + AS +K++TK + G+ + T+ R N+++ + KL P +KPA Sbjct: 1 IGPRLEASILSFNKELTKLYAKSVGVKTLDY-TMLRKNQNS------KEKLNFPCIIKPA 53 Query: 188 NQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQ---GIKGREIECAVLGNDNPQASTC 244 GSS+G+S V E+ A D+ FEFD+ ++VE+ IK + ++ ND S Sbjct: 54 RLGSSIGISIVKDEKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMI-NDEFVFSII 112 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 E +F ++ KY+ G ++ A ++ E+ +K+ + Y L Sbjct: 113 EE-PKKKEFLDFEQKYLSFSGHNELIEADLSEELKEKLEDSFKKIYNPL 160 >emb|CAC35263.1| (AJ290361) D-alanin-D-alanin ligase [Campylobacter jejuni] Length = 160 Score = 60.5 bits (145), Expect = 2e-08 Identities = 46/169 (27%), Positives = 83/169 (48%), Gaps = 12/169 (7%) Query: 128 VGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187 +G + AS +K++TK + G+ T+ R N+++ + KL P +KPA Sbjct: 1 IGPRLEASVLSFNKELTKLYAKSVGVKTLD-CTMLRKNQNS------KEKLNFPCIIKPA 53 Query: 188 NQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQ---GIKGREIECAVLGNDNPQASTC 244 GSS+G+S V E+ A D+ FEFD+ ++VE+ IK + ++ ND S Sbjct: 54 RLGSSIGISIVKDEKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMI-NDEFVFSII 112 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 E +F ++ KY+ G ++ A ++ E+ +K++ + Y L Sbjct: 113 EE-PKKKEFLDFEQKYLSFSGHNELIEADLSEELKEKLKDSFKKIYNPL 160 >emb|CAC35256.1| (AJ290354) D-alanin-D-alanin ligase [Campylobacter jejuni] emb|CAC35264.1| (AJ290362) D-alanin-D-alanin ligase [Campylobacter jejuni] Length = 160 Score = 60.1 bits (144), Expect = 3e-08 Identities = 45/169 (26%), Positives = 83/169 (48%), Gaps = 12/169 (7%) Query: 128 VGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187 +G + AS +K++TK + G+ + T+ R +++ + KL P +KPA Sbjct: 1 IGPRLEASVLSFNKELTKLYAKSVGVKTLDY-TMVRKGQNS------KEKLSFPCIIKPA 53 Query: 188 NQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQ---GIKGREIECAVLGNDNPQASTC 244 GSS+G+S V E+ A D+ FEFD+ ++VE+ IK + ++ ND S Sbjct: 54 RLGSSIGISIVKDEKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMI-NDEFVFSII 112 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 E +F ++ KY+ G ++ A ++ E+ +K++ + Y L Sbjct: 113 EE-PKKKEFLDFEQKYLSFSGHNELIEANLSEELKEKLKDSFKKIYNPL 160 >emb|CAB64513.1| (AJ387995) D-alanine--D-alanine ligase [Streptococcus pneumoniae] emb|CAB64525.1| (AJ388001) D-alanine--D-alanine ligase [Streptococcus pneumoniae] emb|CAB64529.1| (AJ388003) D-alanine--D-alanine ligase [Streptococcus pneumoniae] emb|CAB64533.1| (AJ388005) D-alanine--D-alanine ligase [Streptococcus pneumoniae] emb|CAB64537.1| (AJ388007) D-alanine--D-alanine ligase [Streptococcus pneumoniae] Length = 46 Score = 52.4 bits (124), Expect = 7e-06 Identities = 22/36 (61%), Positives = 26/36 (72%) Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 NT+PGFT SMYP LW G+ Y DLI RL++LA E Sbjct: 1 NTMPGFTQWSMYPLLWDNMGISYPDLIERLVDLAKE 36 >emb|CAB64527.1| (AJ388002) D-alanine--D-alanine ligase [Streptococcus pneumoniae] Length = 46 Score = 52.4 bits (124), Expect = 7e-06 Identities = 22/36 (61%), Positives = 26/36 (72%) Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 NT+PGFT SMYP LW G+ Y DLI RL++LA E Sbjct: 1 NTMPGFTQWSMYPLLWDNMGISYPDLIERLVDLAKE 36 >emb|CAB64535.1| (AJ388006) D-alanine--D-alanine ligase [Streptococcus pneumoniae] Length = 46 Score = 52.4 bits (124), Expect = 7e-06 Identities = 22/36 (61%), Positives = 26/36 (72%) Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 NT+PGFT SMYP LW G+ Y DLI RL++LA E Sbjct: 1 NTMPGFTQWSMYPLLWDNMGISYPDLIERLVDLAKE 36 >emb|CAB64501.1| (AJ387989) D-alanine--D-alanine ligase [Streptococcus pneumoniae] emb|CAB64503.1| (AJ387990) D-alanine--D-alanine ligase [Streptococcus pneumoniae] emb|CAB64505.1| (AJ387991) D-alanine--D-alanine ligase [Streptococcus pneumoniae] emb|CAB64507.1| (AJ387992) D-alanine--D-alanine ligase [Streptococcus pneumoniae] emb|CAB64509.1| (AJ387993) D-alanine--D-alanine ligase [Streptococcus pneumoniae] emb|CAB64511.1| (AJ387994) D-alanine--D-alanine ligase [Streptococcus pneumoniae] emb|CAB64541.1| (AJ388009) D-alanine--D-alanine ligase [Streptococcus pneumoniae] Length = 46 Score = 50.4 bits (119), Expect = 2e-05 Identities = 21/36 (58%), Positives = 26/36 (71%) Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 NT+PGFT SMYP LW G+ Y +LI RL++LA E Sbjct: 1 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLAKE 36 >emb|CAB64517.1| (AJ387997) D-alanine--D-alanine ligase [Streptococcus pneumoniae] emb|CAB64519.1| (AJ387998) D-alanine--D-alanine ligase [Streptococcus pneumoniae] Length = 46 Score = 50.4 bits (119), Expect = 2e-05 Identities = 21/36 (58%), Positives = 26/36 (71%) Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 NT+PGFT SMYP LW G+ Y +LI RL++LA E Sbjct: 1 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLAKE 36 >emb|CAB64539.1| (AJ388008) D-alanine--D-alanine ligase [Streptococcus pneumoniae] Length = 46 Score = 50.1 bits (118), Expect = 4e-05 Identities = 20/34 (58%), Positives = 25/34 (72%) Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 NT+PGFT SMYP LW G+ Y+DLI L++LA Sbjct: 1 NTMPGFTQWSMYPLLWDNMGISYSDLIEHLVDLA 34 >ref|NP_348167.1| (NC_003030) Uncharacterized ATP-grasp enzyme [Clostridium acetobutylicum] gb|AAK79507.1|AE007664_4 (AE007664) Uncharacterized ATP-grasp enzyme [Clostridium acetobutylicum] Length = 328 Score = 49.7 bits (117), Expect = 5e-05 Identities = 33/101 (32%), Positives = 56/101 (54%), Gaps = 6/101 (5%) Query: 140 DKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGV---S 196 +K+VTK +L++ G+N+ +TL A+ F+ K VKP + GV Sbjct: 66 NKEVTKIVLKENGINVPEGVTLKEASEAKEKFSLFYGK---DTVVKPKSTNFGKGVIILK 122 Query: 197 KVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 ++ S E + AV+ AFE+D+ V+VE+ I G+E V+G++ Sbjct: 123 QLRSIEDFENAVNQAFEYDNSVMVEEFIAGKEYRFLVIGDE 163 >emb|CAB64515.1| (AJ387996) D-alanine--D-alanine ligase [Streptococcus pneumoniae] emb|CAB64523.1| (AJ388000) D-alanine--D-alanine ligase [Streptococcus pneumoniae] Length = 46 Score = 48.9 bits (115), Expect = 7e-05 Identities = 21/36 (58%), Positives = 25/36 (69%) Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 NT+PGFT SMYP LW + Y DLI RL++LA E Sbjct: 1 NTMPGFTQWSMYPLLWDNMRISYPDLIERLVDLAKE 36 >emb|CAB64531.1| (AJ388004) D-alanine--D-alanine ligase [Streptococcus pneumoniae] Length = 46 Score = 48.9 bits (115), Expect = 7e-05 Identities = 21/36 (58%), Positives = 24/36 (66%) Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 NT+PGFT SMYP LW G+ Y DLI L+ LA E Sbjct: 1 NTMPGFTQWSMYPLLWDNMGISYPDLIEHLVALAKE 36 >emb|CAB64521.1| (AJ387999) D-alanine--D-alanine ligase [Streptococcus pneumoniae] Length = 46 Score = 48.5 bits (114), Expect = 9e-05 Identities = 21/36 (58%), Positives = 25/36 (69%) Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 NT+PGFT SMYP LW G+ Y DLI L++LA E Sbjct: 1 NTMPGFTQWSMYPLLWDNMGITYPDLIELLVDLAKE 36 >ref|NP_245985.1| (NC_002663) unknown [Pasteurella multocida] gb|AAK03132.1| (AE006146) unknown [Pasteurella multocida] Length = 757 Score = 47.8 bits (112), Expect = 2e-04 Identities = 30/102 (29%), Positives = 56/102 (54%), Gaps = 7/102 (6%) Query: 140 DKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVS--- 196 +K VTK++L+ AG N+ + T + S+A E++ + +KP + +G++ Sbjct: 489 NKVVTKKVLQKAGFNVPQSVEFTSLEKAVASYALFENR---AVVIKPKSTNYGLGITIFQ 545 Query: 197 -KVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 V + E +A A+++AF D +V+VE + G E VLG++ Sbjct: 546 QGVQNREDFAKALEIAFREDKEVMVEDYLVGTEYRFFVLGDE 587 >emb|CAC11141.1| (AJ250581) NikS protein [Streptomyces tendae] Length = 424 Score = 46.6 bits (109), Expect = 4e-04 Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 4/94 (4%) Query: 109 TLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHN 168 +LGE L+ A L G + ++ A DK V K L AG+++AP R R N Sbjct: 83 SLGEREVLRAARIRAELGLPGQSLASATAYRDKHVMKSTLAAAGIDVAPM----RKFRTN 138 Query: 169 ISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEE 202 AE K+G P+ VK + G+S G + EE Sbjct: 139 DDLAEFAWKVGFPVVVKELDSGASNGTVVLMDEE 172 >gb|AAB09711.1| (U70673) phosphoribosylaminoimidazole carboxylase [Filobasidiella neoformans] Length = 583 Score = 46.2 bits (108), Expect = 5e-04 Identities = 53/179 (29%), Positives = 80/179 (44%), Gaps = 14/179 (7%) Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKP---ANQGSSVGVSKVTSE 201 K+ L + G+ +APF L AN F + +LGLPL +K A G K TS Sbjct: 115 KKYLAEKGVAVAPFEELP-ANPTEEDFKAIAGRLGLPLMLKAKTLAYDGRGNSPLKSTSS 173 Query: 202 EQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYI 261 E I L F D + E G E AV+ N + GE+ + A +T + Sbjct: 174 ED--IQASLKFLGDRPLYAE-GWAPFVKEVAVMVVRNKE----GEV---QSYDAVETIHR 223 Query: 262 DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 + + P +N + R +A +A L AG+ V++FL P+ E+++NEI P Sbjct: 224 ESILRVCLAPLRGERGVNQRARELAEKAVGHLEGAGIFGVEMFLMPDGELLLNEIAPRP 282 >sp|Q92233|PUR6_CRYNE PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE (AIR CARBOXYLASE) (AIRC) Length = 582 Score = 46.2 bits (108), Expect = 5e-04 Identities = 53/179 (29%), Positives = 80/179 (44%), Gaps = 14/179 (7%) Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKP---ANQGSSVGVSKVTSE 201 K+ L + G+ +APF L AN F + +LGLPL +K A G K TS Sbjct: 114 KKYLAEKGVAVAPFEELP-ANPTEEDFKAIAGRLGLPLMLKAKTLAYDGRGNSPLKSTSS 172 Query: 202 EQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYI 261 E I L F D + E G E AV+ N + GE+ + A +T + Sbjct: 173 ED--IQASLKFLGDRPLYAE-GWAPFVKEVAVMVVRNKE----GEV---QSYDAVETIHR 222 Query: 262 DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 + + P +N + R +A +A L AG+ V++FL P+ E+++NEI P Sbjct: 223 ESILRVCLAPLRGERGVNQRARELAEKAVGHLEGAGIFGVEMFLMPDGELLLNEIAPRP 281 >gb|AAC98316.1| (AF112302) phosphoribosylaminoimidazole carboxylase [Filobasidiella neoformans] Length = 582 Score = 46.2 bits (108), Expect = 5e-04 Identities = 50/177 (28%), Positives = 78/177 (43%), Gaps = 10/177 (5%) Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQG-SSVGVSKVTSEEQ 203 K+ L + G+ +APF L AN F + +LGLPL +K G S + S Sbjct: 114 KKYLAERGVAVAPFEELP-ANPTEEDFKAIAGRLGLPLMLKAKTLAYDGRGNSPLKSASS 172 Query: 204 YAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDE 263 I L F D + E G E AV+ N + GE+ + A +T + + Sbjct: 173 EDIQASLKFLGDRPLYAE-GWAPFVKEVAVMVVRNKE----GEV---QSYDAVETIHRES 224 Query: 264 DGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 + P +N + R +A +A L AG+ V++FL P+ E+++NEI P Sbjct: 225 ILRVCLTPLRGEKGVNQRARELAEKAVGHLEGAGIFGVEMFLMPDGELLLNEIAPRP 281 >gb|AAK31311.1|AF324792_1 (AF324792) phosphoribosylaminoimidazole carboxylase [Ehrlichia canis] Length = 363 Score = 45.1 bits (105), Expect = 0.001 Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 8/73 (10%) Query: 270 VPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFT------ 323 VPA+I+ EIN + + IA+Q ++ G+ V+ F+T E E+++NEI P + Sbjct: 226 VPASISEEINIQAKNIALQIAESFNLVGILAVEFFITDEQELIVNEIAPRPHNSGHWSLD 285 Query: 324 --NISMYPKLWQA 334 NIS + +L +A Sbjct: 286 ACNISQFEQLTRA 298 >ref|NP_171808.1| (NC_003070) putative 3-methylcrotonyl-CoA carboxylase [Arabidopsis thaliana] gb|AAL50065.1| (AY070723) At1g03090/F10O3_8 [Arabidopsis thaliana] Length = 734 Score = 45.1 bits (105), Expect = 0.001 Identities = 52/225 (23%), Positives = 100/225 (44%), Gaps = 27/225 (12%) Query: 107 HGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR 166 +G L E + + L F+G A DK +KR++ AG+ P + + Sbjct: 118 YGFLSESSDFAQLCEDSGLTFIGPPASAIRDMGDKSASKRIMGAAGV---PLVPGYHGHE 174 Query: 167 HNISFAEVES-KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV-----DLAFEFD-HKVI 219 +I + E+ K+G P+ +KP + G G+ V S + +A + + A F + ++ Sbjct: 175 QDIDHMKSEAEKIGYPIIIKPTHGGGGKGMRIVQSGKDFADSFLGAQREAAASFGVNTIL 234 Query: 220 VEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEI 278 +E+ I + R IE + G+ + G ++ + Y+ + + ++ A AP I Sbjct: 235 LEKYITRPRHIEVQIFGDKH------GNVL-----HLYERDCSVQRRHQKIIEEAPAPNI 283 Query: 279 NDKIRA----IAVQAYQTLGCAGMARVDVFL-TPENEVVINEINT 318 ++K RA AV A + +G V+ + T ++ E+NT Sbjct: 284 SEKFRANLGQAAVSAARAVGYYNAGTVEFIVDTESDQFYFMEMNT 328 >ref|NP_047031.1| (NC_001905) PCACA; L549.5 [Leishmania major] pir||T02793 propionyl CoA carboxylase (alpha chain) PCACA [imported] - Leishmania major (strain Friedlin) gb|AAC24617.1| (AE001274) PCACA; L549.5 [Leishmania major] Length = 665 Score = 44.7 bits (104), Expect = 0.002 Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 13/139 (9%) Query: 107 HGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAP-FITLTRAN 165 +G L E+G Q L N+ FVG D + A DK +KRL AG+ P FI + + Sbjct: 86 YGFLSENGEFQAALHKNNIIFVGPDAHSIEAMGDKIESKRLAHSAGVTCIPGFIGEVKTH 145 Query: 166 RHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDL-------AFEFDHKV 218 + FA ++G P+ +K + G G+ ++ Q D+ AF D K+ Sbjct: 146 EDVLKFAR---EVGYPVMIKASGGGGGKGMRVAYNDSQCVEYYDMCREEAKAAFNSD-KM 201 Query: 219 IVEQGIKG-REIECAVLGN 236 +VE+ I+ R IE V+ + Sbjct: 202 LVEKFIENPRHIEIQVIAD 220 >sp|P20054|PYR1_DICDI PROTEIN PYR1-3 [INCLUDES: GLUTAMINE-DEPENDENT CARBAMOYL-PHOSPHATE SYNTHASE ; ASPARTATE CARBAMOYLTRANSFERASE ; DIHYDROOROTASE ] Length = 2185 Score = 42.7 bits (99), Expect = 0.005 Identities = 51/203 (25%), Positives = 83/203 (40%), Gaps = 13/203 (6%) Query: 118 GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK 177 G+L N +G+ + A D+ + L + IAP + N S E E K Sbjct: 464 GILEKYNCKVLGTPIETIIATEDRGIFAEKLSEINERIAPSMA---CNSLEESLIEAE-K 519 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGN 236 +G P+ V+ A +G ++EQ V A +V+VE+ +KG +EIE VL + Sbjct: 520 IGYPVIVRAAYCLGGLGSGFADNKEQLTALVTEAMATSSQVLVEKSLKGWKEIEYEVLRD 579 Query: 237 DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPA-AIAPEINDKIRAIAVQAYQTLGC 295 T + +D I + VV P+ ++ +R A++ + LG Sbjct: 580 SKDNCIT------VCNMENFDPLGIHTGESIVVAPSQTLSDREYQMLRETAIKTVRHLGV 633 Query: 296 AGMARVDVFLTP-ENEVVINEIN 317 G + L P E I E+N Sbjct: 634 IGECNIQYSLNPYSEEYCIIEVN 656 >pir||S23738 pyr1-3 protein - slime mold (Dictyostelium discoideum) (fragment) emb|CAA39077.1| (X55433) glutamine-dependent carbamyl phosphate synthetase [Dictyostelium discoideum] Length = 1042 Score = 42.7 bits (99), Expect = 0.006 Identities = 51/203 (25%), Positives = 83/203 (40%), Gaps = 13/203 (6%) Query: 118 GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK 177 G+L N +G+ + A D+ + L + IAP + N S E E K Sbjct: 98 GILEKYNCKVLGTPIETIIATEDRGIFAEKLSEINERIAPSMA---CNSLEESLIEAE-K 153 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGN 236 +G P+ V+ A +G ++EQ V A +V+VE+ +KG +EIE VL + Sbjct: 154 IGYPVIVRAAYCLGGLGSGFADNKEQLTALVTEAMATSSQVLVEKSLKGWKEIEYEVLRD 213 Query: 237 DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPA-AIAPEINDKIRAIAVQAYQTLGC 295 T + +D I + VV P+ ++ +R A++ + LG Sbjct: 214 SKDNCIT------VCNMENFDPLGIHTGESIVVAPSQTLSDREYQMLRETAIKTVRHLGV 267 Query: 296 AGMARVDVFLTP-ENEVVINEIN 317 G + L P E I E+N Sbjct: 268 IGECNIQYSLNPYSEEYCIIEVN 290 >gb|AAA37062.1| (J05503) carbamoyl-phosphate synthetase (E.C.6.3.5.5) [Mesocricetus auratus] Length = 1300 Score = 42.0 bits (97), Expect = 0.010 Identities = 52/206 (25%), Positives = 90/206 (43%), Gaps = 19/206 (9%) Query: 118 GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK 177 G+L + +G+ V D+ + + G ++AP AN + A E + Sbjct: 337 GVLARYGVRVLGTPVETIELTEDRRAFAARMAEIGEHVAPS---EAANSLEQAQAAAE-R 392 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGN 236 LG P+ V+ A +G +++E+ + V AF +V++++ +KG +EIE V+ + Sbjct: 393 LGYPVLVRAAFALGGLGSGFASTKEELSALVAPAFAHTSQVLIDKSLKGWKEIEYEVVRD 452 Query: 237 DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDK----IRAIAVQAYQT 292 G V + D I + VV P+ +ND+ +R A++ Q Sbjct: 453 ------AYGNCVTVCNMENLDPLGIHTGESIVVAPSQT---LNDREYQLLRRTAIKVTQH 503 Query: 293 LGCAGMARVDVFLTPENE-VVINEIN 317 LG G V L PE+E I E+N Sbjct: 504 LGIVGECNVQYALNPESEQYYIIEVN 529 >sp|P08955|PYR1_MESAU CAD PROTEIN [INCLUDES: GLUTAMINE-DEPENDENT CARBAMOYL-PHOSPHATE SYNTHASE ; ASPARTATE CARBAMOYLTRANSFERASE ; DIHYDROOROTASE ] pir||A23443 pyrimidine synthesis multifunctional protein CAD - golden hamster Length = 2225 Score = 42.0 bits (97), Expect = 0.010 Identities = 52/206 (25%), Positives = 90/206 (43%), Gaps = 19/206 (9%) Query: 118 GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK 177 G+L + +G+ V D+ + + G ++AP AN + A E + Sbjct: 492 GVLARYGVRVLGTPVETIELTEDRRAFAARMAEIGEHVAPS---EAANSLEQAQAAAE-R 547 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGN 236 LG P+ V+ A +G +++E+ + V AF +V++++ +KG +EIE V+ + Sbjct: 548 LGYPVLVRAAFALGGLGSGFASTKEELSALVAPAFAHTSQVLIDKSLKGWKEIEYEVVRD 607 Query: 237 DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDK----IRAIAVQAYQT 292 G V + D I + VV P+ +ND+ +R A++ Q Sbjct: 608 ------AYGNCVTVCNMENLDPLGIHTGESIVVAPSQT---LNDREYQLLRRTAIKVTQH 658 Query: 293 LGCAGMARVDVFLTPENE-VVINEIN 317 LG G V L PE+E I E+N Sbjct: 659 LGIVGECNVQYALNPESEQYYIIEVN 684 >ref|NP_004332.1| (NM_004341) carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase; CAD trifunctional protein of pyrimidine biosynthesis [Homo sapiens] sp|P27708|PYR1_HUMAN CAD PROTEIN [INCLUDES: GLUTAMINE-DEPENDENT CARBAMOYL-PHOSPHATE SYNTHASE ; ASPARTATE CARBAMOYLTRANSFERASE ; DIHYDROOROTASE ] dbj|BAA11423.1| (D78586) multifunctional protein CAD [Homo sapiens] Length = 2225 Score = 41.6 bits (96), Expect = 0.014 Identities = 50/206 (24%), Positives = 86/206 (41%), Gaps = 19/206 (9%) Query: 118 GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK 177 G+L + +G+ V D+ + + G ++AP + A + Sbjct: 492 GVLARYGVRVLGTTVETIELTEDRRAFAARMAEIGEHVAP----SEAGNSLEQAQAAAER 547 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGN 236 LG P+ V+ A +G ++ E+ + V AF +V+V++ +KG +EIE V+ + Sbjct: 548 LGYPVLVRAAFAVGGLGSGFASNREELSALVAPAFAHTSQVLVDKSLKGWKEIEYEVVRD 607 Query: 237 DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDK----IRAIAVQAYQT 292 G V + D I + VV P+ +ND+ +R A++ Q Sbjct: 608 ------AYGNCVTVCNMENLDPLGIHTGESIVVAPSQT---LNDREYQLLRQTAIKVTQH 658 Query: 293 LGCAGMARVDVFLTPENE-VVINEIN 317 LG G V L PE+E I E+N Sbjct: 659 LGIVGECNVQYALNPESEQYYIIEVN 684 >ref|NP_455402.1| (NC_003198) ribosomal protein S6 modification protein [Salmonella enterica subsp. enterica serovar Typhi] ref|NP_459852.1| (NC_003197) ribosomal protein S6 modification protein [Salmonella typhimurium LT2] gb|AAL19811.1| (AE008736) ribosomal protein S6 modification protein [Salmonella typhimurium LT2] emb|CAD05314.1| (AL627268) ribosomal protein S6 modification protein [Salmonella enterica subsp. enterica serovar Typhi] Length = 300 Score = 40.8 bits (94), Expect = 0.020 Identities = 66/271 (24%), Positives = 113/271 (41%), Gaps = 40/271 (14%) Query: 93 GQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGS----DVLASAACMDKDVTKRLL 148 G+ LP D + P +G + G + +GS + +A DK + +LL Sbjct: 52 GRRLPHFDAVIP----RIGSAITFYGTAALRQFELLGSYPLNESVAITRARDKLRSLQLL 107 Query: 149 RDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV 208 G+++ P + + ++ G PL VK +GV + + + Sbjct: 108 ARQGIDL-PITGIAHSPDDTSDLIKMVG--GAPLVVKLVEGTQGIGVVLAETRQAAESVI 164 Query: 209 DLAFEFDHKVIVEQGI---KGREIECAVLGNDNPQA-STCGEIVLTSDFYAYDTKYIDED 264 D + ++V++ I KG +I C V+GN+ A C + DF + + Sbjct: 165 DAFRGLNAHILVQEYIAEAKGCDIRCLVVGNEVVAAIERCAK---AGDFRS------NLH 215 Query: 265 GAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTN 324 V A I P + R IA++A QTLG +A VD+ +V+ E+N PG Sbjct: 216 RGGVASIATITP----RERDIAIKAAQTLGL-DVAGVDILRAARGPLVM-EVNASPGLEG 269 Query: 325 ISMYPKLWQASGLGYTDLITRLIELALERHA 355 I + +G+ D+ R+I+ +ERHA Sbjct: 270 IE------KTTGV---DIAGRMIQW-IERHA 290 >gb|AAG39981.1|AF302776_1 (AF302776) phosphoribosyl aminoimidazole carboxylase [Aphanizomenon sp. TR183] Length = 232 Score = 40.4 bits (93), Expect = 0.025 Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 3/75 (4%) Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 S GEI++ + A +T+ ++ V+ PA I E N +I AIA + +L G+ + Sbjct: 66 SVNGEIII---YPAVETRQEEQVCRWVIAPAKITQEQNLEIEAIAHKLLTSLQYVGVCGI 122 Query: 302 DVFLTPENEVVINEI 316 ++FLT +++INEI Sbjct: 123 ELFLTAAGKILINEI 137 >ref|NP_106624.1| (NC_002678) hypothetical protein [Mesorhizobium loti] dbj|BAB52410.1| (AP003008) hypothetical protein [Mesorhizobium loti] Length = 409 Score = 40.0 bits (92), Expect = 0.031 Identities = 54/225 (24%), Positives = 95/225 (42%), Gaps = 36/225 (16%) Query: 138 CMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES---KLGLPLFVKPANQGSSVG 194 C DK ++LL +AG+ I + R + AEVES ++GLP+ VKPA S G Sbjct: 109 CCDKFTQRQLLAEAGVPIPAY-------RMAANAAEVESASEEIGLPVIVKPAVGSGSRG 161 Query: 195 ------VSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTCGEIV 248 V ++ Y + + + +++VE+ +G ++GN+ G Sbjct: 162 VRLCRNVDELAEHTTYLLGEEHIWRSSPRILVEEFAQGPLYGAQIMGNEVIGIEAAG--- 218 Query: 249 LTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA-GMARVDVFLTP 307 + ++ + PA + + +++I +++ + LG G ++ T Sbjct: 219 -----FGPPPHFVYRE---FTFPALLTDDDHERITNVSLSCLRALGLGWGPTGIEFRWTK 270 Query: 308 ENEVVINEINTLPGFTNISMYPKLWQASGLGY-TDLITRLIELAL 351 VVI L G + P+L Q L Y DLIT I+L + Sbjct: 271 RGPVVIEVNPRLAGMPD----PQLVQ---LAYGVDLITEHIKLVI 308 >ref|NP_248492.1| (NC_000909) phosphoribosylglycinamide formyltransferase 2 (purT) [Methanococcus jannaschii] sp|Q58881|PURT_METJA PROBABLE PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE 2 (GART 2) (GAR TRANSFORMYLASE 2) (5'-PHOSPHORIBOSYLGLYCINAMIDE TRANSFORMYLASE 2) (FORMATE-DEPENDENT GAR TRANSFORMYLASE) pir||E64485 phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) MJ1486 [similarity] - Methanococcus jannaschii gb|AAB99496.1| (U67589) phosphoribosylglycinamide formyltransferase 2 (purT) [Methanococcus jannaschii] Length = 393 Score = 40.0 bits (92), Expect = 0.032 Identities = 45/156 (28%), Positives = 69/156 (43%), Gaps = 30/156 (19%) Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQ----YAIAVDLAFEFDHKVIVEQGIKGREIECA 232 KLGLP VKP S G S V SEE + IA + A ++VIVE+ I Sbjct: 150 KLGLPCVVKPIMSSSGKGQSVVRSEEDIEKAWKIAKEGARGIGNRVIVEEFINFDY---- 205 Query: 233 VLGNDNPQASTCGEIVLTSDFYAYDTKY--------IDEDGAKVVVPAAIAPEINDKIRA 284 EI L + A TK+ ID D + P ++ E+ ++ + Sbjct: 206 -------------EITLLTARTAEGTKFCEPIGHVQIDGDYHESWQPHNMSAELKEQAQD 252 Query: 285 IAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 IA + LG G+ V++F+ + EV+ +E++ P Sbjct: 253 IAKKVTDALGGYGIFGVELFVKGD-EVIFSEVSPRP 287 >gb|AAF32338.1|AF218939_6 (AF218939) acetyl-CoA carboxylase [Bacillus subtilis] Length = 430 Score = 40.0 bits (92), Expect = 0.040 Identities = 49/222 (22%), Positives = 97/222 (43%), Gaps = 26/222 (11%) Query: 100 DVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFI 159 D I P +G L E+ + N+ F+G A K ++ + +AG+ + P + Sbjct: 62 DAIHP-GYGLLSENSRFAQRCKEENIVFIGPSPAVIAKIGSKIKARKAMEEAGVPVVPGV 120 Query: 160 TLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVD----LAFEF- 214 + + + A S++G P+ +K + G +G+ V EE A + A +F Sbjct: 121 SESLGDIQAACLA--ASEIGYPVMLKASAGGGGIGMQLVPDEEALIKAYEGNKKRAADFF 178 Query: 215 -DHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPA 272 D + +E+ I+ R IE +L + + A + ++ + + V+ Sbjct: 179 GDGSMYIEKVIEHARHIEIQILADHHGHA-----------VHLFERDCSVQRRHQKVIEE 227 Query: 273 AIAPEINDKIR----AIAVQAYQTLGCAGMARVDVFLTPENE 310 A +P ++D++R AV+A + +G A ++ FL EN+ Sbjct: 228 APSPFVDDELRMKIGETAVKAAKAIGYANAGTIE-FLVDENK 268 >ref|NP_485342.1| (NC_003272) phosphoribosylglycinamide formyltransferase 2 [Nostoc sp. PCC 7120] dbj|BAB73256.1| (AP003585) phosphoribosylglycinamide formyltransferase 2 [Nostoc sp. PCC 7120] Length = 391 Score = 40.0 bits (92), Expect = 0.040 Identities = 46/153 (30%), Positives = 67/153 (43%), Gaps = 17/153 (11%) Query: 174 VESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEF----DHKVIVEQGIKGREI 229 V +G P VKP S G S V ++E+ A D A KVIVE+ I EI Sbjct: 140 VSDNIGFPNVVKPVMSSSGKGQSVVATKEEVEKAWDYAIANSRGDSQKVIVEEFIN-FEI 198 Query: 230 ECAVLGNDNPQAST--CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAV 287 E +L A T C I + Y + PA I+ + + +AIA Sbjct: 199 EITLLTIKQWNAPTIFCSPIGHRQERGDYQESW---------QPAGISEDKILEAQAIAK 249 Query: 288 QAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 LG AG+ V+ F+T ++EV+ +E++ P Sbjct: 250 TVTDALGGAGIFGVEFFIT-KDEVIFSELSPRP 281 >emb|CAB56843.1| (X99978) carbamoyl-phosphate synthase large subunit [Lactobacillus plantarum] Length = 1020 Score = 39.7 bits (91), Expect = 0.044 Identities = 43/178 (24%), Positives = 75/178 (41%), Gaps = 26/178 (14%) Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLG 235 +G PL V+P+ ++ V ++ + + A H ++++Q + G E E VL Sbjct: 698 IGYPLLVRPSFVLGGRAMAIVHNDHELTPVIKSAVAAGHGAPILMDQYLAGTECEVDVLS 757 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYID------EDGAKVVVPAAIAPEINDKIRAIAVQA 289 + TS F ++I+ D V P ++P + DKI IA + Sbjct: 758 DG------------TSCFIPGIMEHIEGAGVHSGDSITVYPPQHLSPAVQDKIVTIATKL 805 Query: 290 YQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 Q L C GM + +T ++V + ++N T P + + + L L TRLI Sbjct: 806 AQHLHCVGMMNIQFVVT--DDVYVIDVNPRASRT----VPYMSKVTHLPLAQLATRLI 857 >gb|AAK53061.1| (AF322179) nikkomycin biosynthesis protein SanS [Streptomyces ansochromogenes] Length = 424 Score = 39.7 bits (91), Expect = 0.047 Identities = 29/94 (30%), Positives = 43/94 (44%), Gaps = 4/94 (4%) Query: 109 TLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHN 168 +LGE L+ A L G + ++ A DK V K L AG+++AP R R + Sbjct: 83 SLGEREVLRAARIRAELGLPGQSLASATAYRDKHVMKSTLAAAGIDVAPM----RKFRTD 138 Query: 169 ISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEE 202 A +G P+ VK + G+S G + EE Sbjct: 139 DDLAGFAWDVGFPVVVKELDSGASNGTVVLMDEE 172 >gb|AAA67356.1| (U12536) 3-methylcrotonyl-CoA carboxylase precursor [Arabidopsis thaliana] Length = 715 Score = 39.7 bits (91), Expect = 0.051 Identities = 39/166 (23%), Positives = 67/166 (39%), Gaps = 11/166 (6%) Query: 41 LGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVD 100 LGI + +D + + + D A PSA L+ + G + Sbjct: 60 LGIQTVAVYSDADRDSLHVKSADEADRIGPPSAKRLSYLSG------VTIMEAAARTGAQ 113 Query: 101 VIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFIT 160 I P +G L E + + L F+G A DK +KR++ AG+ P + Sbjct: 114 AIHP-GYGFLSESSDFAQLCEDSGLTFIGPPASAIRDMGDKSASKRIMGAAGV---PLVP 169 Query: 161 LTRANRHNISFAEVES-KLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 + +I + E+ K+G P+ +KP + G G+ V S + +A Sbjct: 170 GYHGHEQDIDHMKSEAEKIGYPIIIKPTHGGGGKGMRIVQSGKDFA 215 >sp|P46537|CARB_BACCL CARBAMOYL-PHOSPHATE SYNTHASE, PYRIMIDINE-SPECIFIC, LARGE CHAIN (CARBAMOYL-PHOSPHATE SYNTHETASE AMMONIA CHAIN) pir||I40169 carbamoyl-phosphate synthase (glutamine-hydrolyzing) (EC 6.3.5.5) - Bacillus caldolyticus emb|CAA51739.1| (X73308) carbamoyl-phosphate synthase (glutamine-hydrolysing) [Bacillus caldolyticus] Length = 1065 Score = 39.3 bits (90), Expect = 0.053 Identities = 47/218 (21%), Positives = 95/218 (43%), Gaps = 18/218 (8%) Query: 100 DVIFPIVHGTLGEDGSLQ----GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNI 155 D I P + G G + +++ G+L + +G+ + A D++ + L+ + G + Sbjct: 84 DAILPTLGGQTGLNLAVELAKAGVLEECGVEILGTKLEAIEKAEDREQFRALMNELGEPV 143 Query: 156 APFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFD 215 P + + +F E ++G P+ V+PA G T+EE+ V + Sbjct: 144 -PESAIIHSLEEAYAFVE---QIGYPVIVRPAFTLGGTGGGICTNEEELVEIVSTGLKLS 199 Query: 216 --HKVIVEQGIKG-REIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPA 272 H+ ++E+ I G +EIE V+ + N A ++ + D I + VV P+ Sbjct: 200 PVHQCLLERSIAGYKEIEYEVMRDANDNA------IVVCNMENIDPVGIHTGDSIVVAPS 253 Query: 273 -AIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPEN 309 ++ +R +++ + LG G V + L P++ Sbjct: 254 QTLSDREYQLLRNASLKIIRALGIEGGCNVQLALDPDS 291 >gb|AAL48287.1|AF452495_1 (AF452495) aminoimidazole ribonucleotide carboxylase [Vigna unguiculata] Length = 634 Score = 39.3 bits (90), Expect = 0.054 Identities = 47/196 (23%), Positives = 83/196 (41%), Gaps = 27/196 (13%) Query: 138 CMDKDVTKRLLRDA----------GLNIAPFITLTRANRHNISFAEVESKLGLPLFVKP- 186 C K T R+++D G+ + F+ + S +V G PL +K Sbjct: 166 CQPKASTVRIIQDKYQQKVHFSKHGIPLPEFMKIDDLE----SAKKVGELFGYPLMIKSR 221 Query: 187 --ANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 A G V+K SEE+ + AVD FD + E+ + ++ + +C Sbjct: 222 RLAYDGRGNFVAK--SEEELSSAVDALGGFDRGLYAEKWAPFVKELAVIVARGRDNSISC 279 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 +V +T + D V PA + + + +AV A ++L AG+ V++F Sbjct: 280 YPVV--------ETIHRDNICHIVKAPANVKWKTRELATEVAVNAVKSLEGAGVFAVELF 331 Query: 305 LTPENEVVINEINTLP 320 LT + E+++NE+ P Sbjct: 332 LTNDGEILLNEVAPRP 347 >gb|AAD25800.1|AC006550_8 (AC006550) Identical to gb|U12536 3-methylcrotonyl-CoA carboxylase precursor protein from Arabidopsis thaliana. ESTs gb|H35836, gb|AA651295 and gb|AA721862 come from this gene Length = 730 Score = 39.3 bits (90), Expect = 0.054 Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 4/100 (4%) Query: 107 HGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR 166 +G L E + + L F+G A DK +KR++ AG+ P + + Sbjct: 118 YGFLSESSDFAQLCEDSGLTFIGPPASAIRDMGDKSASKRIMGAAGV---PLVPGYHGHE 174 Query: 167 HNISFAEVES-KLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 +I + E+ K+G P+ +KP + G G+ V S + +A Sbjct: 175 QDIDHMKSEAEKIGYPIIIKPTHGGGGKGMRIVQSGKDFA 214 >sp|Q91437|PYR1_SQUAC CAD PROTEIN [INCLUDES: GLUTAMINE-DEPENDENT CARBAMOYL-PHOSPHATE SYNTHASE ; ASPARTATE CARBAMOYLTRANSFERASE ; DIHYDROOROTASE ] pir||A57541 pyrimidine synthesis multifunctional protein CAD - spiny dogfish gb|AAA74569.1| (U18868) multifunctional protein CAD [Squalus acanthias] Length = 2242 Score = 39.3 bits (90), Expect = 0.067 Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 19/149 (12%) Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLG 235 +LG P+ V+ A +G ++E+ V AF +++V++ +KG +EIE V+ Sbjct: 550 RLGYPVLVRAAFALGGLGSGFAQNKEELVTLVTQAFAHTSQILVDKSLKGWKEIEYEVVR 609 Query: 236 N--DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDK----IRAIAVQA 289 + DN + + D I + VV P+ +NDK +R A++ Sbjct: 610 DAYDN--------CITVCNMENVDPLGIHTGESIVVAPSQT---LNDKEYNLLRTTAIKV 658 Query: 290 YQTLGCAGMARVDVFLTPENE-VVINEIN 317 + LG G + L+PE+E I E+N Sbjct: 659 IRHLGVVGECNIQYALSPESEQYFIIEVN 687 >pir||T44813 biotin carboxylase (EC 6.3.4.14) yngH [imported] - Bacillus subtilis gb|AAF08802.1|AF184956_9 (AF184956) YngH [Bacillus subtilis] Length = 444 Score = 38.9 bits (89), Expect = 0.072 Identities = 49/231 (21%), Positives = 99/231 (42%), Gaps = 27/231 (11%) Query: 100 DVIFPIVHGTLGEDGSLQGMLRVANLPFVG--SDVLASAACMDKDVTKRLLRDAGLNIAP 157 D I P +G L E+ + N+ F+G D++A K ++ + AG+ + P Sbjct: 76 DAIHP-GYGLLSENSRFAERCKQENIVFIGPAPDIIAKMG--SKIEARKAMEAAGVPVVP 132 Query: 158 FITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHK 217 ++ + + S++G P+ +K + G +G+ V +EE A+ A+E + K Sbjct: 133 GVSESLGDIQEA--CRTASQIGYPVMLKASAGGGGIGMQLVQNEE----ALRKAYEGNKK 186 Query: 218 VIVE-QGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGA-----KVVVP 271 + G IE + + + E+ L +D + + + D + + V+ Sbjct: 187 RAADFFGDGSMYIEKVI------EHARHIEVQLLADHFGHTIHLFERDCSVQRRHQKVIE 240 Query: 272 AAIAPEINDKIR----AIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 A +P ++DK+R AV+A + +G ++ + P E+NT Sbjct: 241 EAPSPFLDDKLRMKIGQTAVKAAKAIGYTNAGTIEFLVDPNQNFYFLEMNT 291 >ref|NP_228257.1| (NC_000853) phosphoribosylaminoimidazole carboxylase, ATPase subunit [Thermotoga maritima] pir||H72374 probable phosphoribosylaminoimidazole carboxylase (EC 4.1.1.21) carbon dioxide-fixation chain TM0447 [similarity] - Thermotoga maritima (strain MSB8) gb|AAD35542.1|AE001723_12 (AE001723) phosphoribosylaminoimidazole carboxylase, ATPase subunit [Thermotoga maritima] Length = 380 Score = 38.9 bits (89), Expect = 0.085 Identities = 47/185 (25%), Positives = 76/185 (40%), Gaps = 26/185 (14%) Query: 140 DKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQG-SSVGVSKV 198 DK V K L+ G+ + P L + ++ + G P+ K G GV + Sbjct: 100 DKFVQKEFLKKNGIPV-PEYKLVKDLESDV------REFGFPVVQKARKGGYDGRGVFII 152 Query: 199 TSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 +E+ A+ + V +E+ E AV+ N + GEI Y Sbjct: 153 KNEKDLENAIKGETYLEEFVEIEK-------ELAVMVARNEK----GEIAC----YPVVE 197 Query: 259 KYIDEDGA---KVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINE 315 Y DED V+ PA I + + R IA + L G+ +++FLT + E+++NE Sbjct: 198 MYFDEDANICDTVIAPARIEEKYSKIAREIATSVVEALEGVGIFGIEMFLTKQGEILVNE 257 Query: 316 INTLP 320 I P Sbjct: 258 IAPRP 262 >ref|NP_376481.1| (NC_003106) 513aa long hypothetical biotin carboxylase [Sulfolobus tokodaii] dbj|BAB65590.1| (AP000983) 513aa long hypothetical biotin carboxylase [Sulfolobus tokodaii] Length = 513 Score = 38.5 bits (88), Expect = 0.090 Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 24/160 (15%) Query: 52 SDASNYLLN---ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHG 108 S+A Y L+ AD+ +I P+ S + +IDA D + P +G Sbjct: 35 SEADKYALHVKYADEAYYIGPPPALESYLNI-----QAIIDAAEK---AHADAVHP-GYG 85 Query: 109 TLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIA-----PFITLTR 163 L E+ + A L ++G V A A K KR+ + AG+ I+ P +L Sbjct: 86 FLSENADFAEAVVKAGLTWIGPPVDAMRAIKSKLDGKRIAKQAGVPISPGSDGPVDSLDE 145 Query: 164 ANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 A + AE K+G P+ VK A G G+++V + +Q Sbjct: 146 A----LKLAE---KIGYPIMVKAAFGGGGTGITRVDNPDQ 178 >ref|NP_441123.1| (NC_000911) glycinamide ribonucleotide transformylase [Synechocystis sp. PCC 6803] sp|Q55336|PURT_SYNY3 PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE 2 (GART 2) (GAR TRANSFORMYLASE 2) (5'-PHOSPHORIBOSYLGLYCINAMIDE TRANSFORMYLASE 2) (FORMATE-DEPENDENT GAR TRANSFORMYLASE) pir||S74842 phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) slr0861 [similarity] - Synechocystis sp. (strain PCC 6803) gb|AAA85911.1| (L36958) glycinamide ribonucleotide transformylase [Synechocystis sp.] dbj|BAA17803.1| (D90909) glycinamide ribonucleotide transformylase [Synechocystis sp. PCC 6803] Length = 391 Score = 38.5 bits (88), Expect = 0.11 Identities = 45/154 (29%), Positives = 67/154 (43%), Gaps = 17/154 (11%) Query: 173 EVESKLGLPLFVKPANQGSSVGVSKVTS----EEQYAIAVDLAFEFDHKVIVEQGIKGRE 228 EV +G P VKP S G S V + ++ ++ A+ A KVIVE+ I E Sbjct: 139 EVSQAIGFPNVVKPVMSSSGKGQSVVNNAGEVQQAWSAAIAGARGDQTKVIVEEFIP-FE 197 Query: 229 IECAVLGNDNPQAST--CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIA 286 +E +L Q T C I + Y + PA + + +AIA Sbjct: 198 LEITLLTIRQWQGETLFCDPIGHRQERGDYQESW---------QPAPLTQRQLAQAQAIA 248 Query: 287 VQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 LG AG+ V+ F+TPE EV+ +E++ P Sbjct: 249 KTVTDALGGAGIFGVEFFITPE-EVIFSELSPRP 281 >ref|NP_465299.1| (NC_003210) phosphoribosylaminoimidazole carboxylase II [Listeria monocytogenes EGD-e] emb|CAC99852.1| (AL591981) phosphoribosylaminoimidazole carboxylase II [Listeria monocytogenes] Length = 374 Score = 38.5 bits (88), Expect = 0.11 Identities = 45/196 (22%), Positives = 84/196 (41%), Gaps = 23/196 (11%) Query: 129 GSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK---LGLPLFVK 185 GS++L + D+ + K L A +NIAP+ + + E+E++ +G P +K Sbjct: 98 GSELL--SITQDRILEKAYLESANINIAPYAVIVEQD-------EIENEIKSIGYPAVLK 148 Query: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTC 244 A QG G +V + I ++E I +EI V N + Q T Sbjct: 149 TA-QGGYDGKGQVVIHDARDIETAARLLRYGSCVLEAWIPFEKEISVVVARNLDGQIET- 206 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 F + +++ +VPA +A ++ ++ IA + + L G+ V++F Sbjct: 207 --------FPVAENVHVNNILHTTMVPADVAADVYEEAEEIARKLAEVLQLCGVLAVEMF 258 Query: 305 LTPENEVVINEINTLP 320 +T + +NE+ P Sbjct: 259 VTKSGAIYVNELAPRP 274 >ref|NP_486782.1| (NC_003272) phosphoribosyl aminoimidazole carboxylase [Nostoc sp. PCC 7120] dbj|BAB74441.1| (AP003590) phosphoribosyl aminoimidazole carboxylase [Nostoc sp. PCC 7120] Length = 380 Score = 38.1 bits (87), Expect = 0.13 Identities = 49/188 (26%), Positives = 90/188 (47%), Gaps = 21/188 (11%) Query: 134 ASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA-----N 188 A + +DK + L++ GL + F L N+ N+ ++++ LG PL +K Sbjct: 94 ALSPLLDKYHQRCYLKNLGLPVPQFFAL--ENQENL-ISKIDD-LGFPLVLKSRRHGYDG 149 Query: 189 QGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTCGEIV 248 QG+ + T +E+ +DL + ++E+ I E E AV+ S GE+V Sbjct: 150 QGTFIIHDLATLQEK----IDLNHNTNTTYLIEEFIP-FERELAVIA----ARSVDGEVV 200 Query: 249 LTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE 308 + + +T+ + +V+ PA I P+ AIA +L G+ +++FLT + Sbjct: 201 I---YPVVETQQEQQVCRRVIAPAHITPDQAAAAEAIASTLLNSLEVVGVFGIELFLTAD 257 Query: 309 NEVVINEI 316 +V++NEI Sbjct: 258 GQVLVNEI 265 >ref|NP_277017.1| (NC_000916) biotin carboxylase [Methanothermobacter thermautotrophicus] sp|O27939|PYCA_METTH PYRUVATE CARBOXYLASE SUBUNIT A (PYRUVIC CARBOXYLASE A) pir||A69123 biotin carboxylase - Methanobacterium thermoautotrophicum (strain Delta H) gb|AAB86377.1| (AE000942) biotin carboxylase [Methanothermobacter thermautotrophicus] Length = 491 Score = 38.1 bits (87), Expect = 0.14 Identities = 48/223 (21%), Positives = 97/223 (42%), Gaps = 25/223 (11%) Query: 107 HGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR 166 +G L E+ L + +G A DK +K+L++ AG+ + P ++ Sbjct: 82 YGFLAENPRLGEECEKQGIKLIGPKGSVIEAMGDKITSKKLMKKAGVPVIPGTDQGVSDP 141 Query: 167 HNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVD-----LAFEF-DHKVIV 220 A + +G P+ +K + G +G+ V E++ A++ A F D V + Sbjct: 142 DEA--ARIADSIGYPVIIKASAGGGGIGMRAVYEEDELIRAMESTQSVAASAFGDPTVYI 199 Query: 221 EQGI-KGREIECAVLGNDNPQASTCGEIVLTSD----FYAYDTKYIDEDGAKVVVPAAIA 275 E+ + + R IE V+ +++ G ++ +D K I+E + + + Sbjct: 200 EKYLERPRHIEFQVMADES------GNVIHLADRECSIQRRHQKLIEEAPSPI-----MT 248 Query: 276 PEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 PE+ +++ + AV+A + +G V+ FL + E+NT Sbjct: 249 PELRERMGSAAVKAAEYIGYENAGTVE-FLYSNGDFYFLEMNT 290 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: ref|NP_286119.1| (NC_002655) Z0477 gene product [Escherichia col... 534 e-151 ref|NP_454975.1| (NC_003198) D-alanine:D-alanine ligase A [Salmo... 523 e-148 sp|Q47827|DDL_ENTHR D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 466 e-130 gb|AAB17902.2| (U39790) D-alanine:D-alanine ligase [Enterococcus... 465 e-130 gb|AAG49141.1|AF215736_1 (AF215736) D-alanine:D-alanine ligase [... 461 e-129 sp|Q47758|DDL_ENTFA D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 432 e-120 gb|AAC43218.1| (U00457) D-alanine:D-alanine ligase-related prote... 431 e-120 sp|Q06893|VANB_ENTFC VANCOMYCIN B-TYPE RESISTANCE PROTEIN VANB (... 424 e-118 emb|CAB61227.1| (Y15704) vana protein [Bacillus circulans] 424 e-118 sp|P25051|VANA_ENTFC VANCOMYCIN/TEICOPLANIN A-TYPE RESISTANCE PR... 424 e-118 ref|NP_464381.1| (NC_003210) D-alanine--D-alanine ligase [Lister... 423 e-117 emb|CAB64487.1| (AJ243059) D-ala,D-ala ligase [Streptococcus pne... 423 e-117 ref|NP_372607.1| (NC_002758) D-alanine-D-alanine ligase [Staphyl... 422 e-117 gb|AAF72363.1|AF192329_24 (AF192329) VanB [Enterococcus faecalis] 422 e-117 emb|CAB64471.1| (AJ243055) D-ala,D-ala ligase [Streptococcus pne... 422 e-117 sp|O54631|DDL_STRPN D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 422 e-117 emb|CAB64475.1| (AJ243056) D-ala,D-ala ligase [Streptococcus pne... 422 e-117 ref|NP_346110.1| (NC_003028) D-alanine--D-alanine ligase [Strept... 422 e-117 ref|NP_470190.1| (NC_003212) D-alanine--D-alanine ligase [Lister... 422 e-117 ref|NP_485023.1| (NC_003272) D-alanyl-D-alanine ligase [Nostoc s... 421 e-117 ref|NP_388337.1| (NC_000964) D-alanyl-D-alanine ligase A [Bacill... 421 e-117 ref|NP_359108.1| (NC_003098) D-alanine-D-alanine ligase [Strepto... 421 e-117 pdb|1E4E|A Chain A, D-Alanyl-D-Lacate Ligase 421 e-117 emb|CAB05883.1| (Z83305) D-alanine:D-alanine ligase-related prot... 420 e-116 pdb|1E4E|B Chain B, D-Alanyl-D-Lacate Ligase 419 e-116 emb|CAB64459.1| (AJ243052) D-ala,D-ala ligase [Streptococcus pne... 419 e-116 emb|CAB64463.1| (AJ243053) D-ala,D-ala ligase [Streptococcus pne... 419 e-116 gb|AAG34685.1|AF310955_1 (AF310955) ligase VanB2 [Enterococcus f... 418 e-116 gb|AAG34684.1|AF310954_1 (AF310954) ligase VanB2 [Enterococcus f... 418 e-116 gb|AAG37026.1|AF277571_3 (AF277571) D-alanine:D-lactate ligase [... 418 e-116 gb|AAG34683.1|AF310953_1 (AF310953) ligase VanB2 [Enterococcus f... 417 e-116 emb|CAB63849.1| (AJ243051) D-ala,D-ala ligase [Streptococcus pne... 417 e-116 gb|AAF36803.1|AF155139_2 (AF155139) putative D-alanyl-D-alanine ... 416 e-115 ref|NP_103309.1| (NC_002678) D-alanine-D-alanine ligase A [Mesor... 414 e-115 emb|CAB64483.1| (AJ243058) D-ala,D-ala ligase [Streptococcus pne... 413 e-114 gb|AAD42184.1|AF130997_5 (AF130997) D-alanine:D-lactate ligase [... 410 e-114 pir||T35363 D-alanine--D-alanine ligase (EC 6.3.2.4) A SC66T3.06... 410 e-114 ref|NP_266497.1| (NC_002662) D-alanine-D-alanine ligase (EC 6.3.... 410 e-114 gb|AAD41882.1|AF153050_3 (AF153050) D-alanine:D-lactate ligase [... 409 e-113 ref|NP_269512.1| (NC_002737) putative D-ala,D-ala ligase [Strept... 405 e-112 ref|NP_440997.1| (NC_000911) D-alanine:D-alanine ligase-related ... 401 e-111 gb|AAD51060.1|AF175293_5 (AF175293) D-alanine:D-lactate ligase [... 400 e-110 sp|Q47823|DDL_ENTGA D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 400 e-110 sp|Q9ZGN0|DDL_MYCSM D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 399 e-110 ref|NP_349497.1| (NC_003030) D-alanine-D-alanine ligase [Clostri... 397 e-109 ref|NP_294085.1| (NC_001263) D-alanine--D-alanine ligase [Deinoc... 396 e-109 gb|AAC23582.1| (U82965) D-alanine:D-alanine ligase-related prote... 394 e-109 ref|NP_302152.1| (NC_002677) D-alanine-D-alanine ligase A [Mycob... 392 e-108 ref|NP_337574.1| (NC_002755) D-alanine--D-alanine ligase [Mycoba... 392 e-108 gb|AAF71281.1|AF253562_5 (AF253562) ligase [Enterococcus faecalis] 391 e-108 ref|NP_217497.1| (NC_000962) ddlA [Mycobacterium tuberculosis H3... 390 e-107 gb|AAD19835.1| (AF060799) D-alanyl-D-alanine ligase [Amycolatops... 388 e-107 ref|NP_219107.1| (NC_000919) D-alanine--D-alanine ligase (ddlA) ... 388 e-107 sp|P29753|VANC_ENTGA VANCOMYCIN C-TYPE RESISTANCE PROTEIN VANC (... 385 e-106 gb|AAL27442.1|AF430807_7 (AF430807) VanE [Enterococcus faecalis] 382 e-105 ref|NP_539644.1| (NC_003317) D-ALANINE--D-ALANINE LIGASE A [Bruc... 382 e-105 sp|Q9ZBR9|DDL_STRCO D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 382 e-105 gb|AAA60990.1| (L29638) ligase [Enterococcus casseliflavus] 375 e-103 pdb|1EHI|A Chain A, D-Alanine:d-Lactate Ligase (Lmddl2) Of Vanco... 365 e-100 gb|AAB18338.1| (U75444) D-Ala-D-Ala ligase2 [Leuconostoc mesente... 364 e-100 sp|Q48745|DDL_LEUME D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 364 1e-99 ref|NP_220281.1| (NC_000117) UDP-N-acetylmuramate-alanine ligase... 361 6e-99 ref|NP_439298.1| (NC_000907) D-alanine--D-alanine ligase (ddlB) ... 350 1e-95 ref|NP_296522.1| (NC_002620) UDP-N-acetylmuramate--alanine ligas... 349 2e-95 sp|Q9PLG1|MUDD_CHLMU MURC/DDL BIFUNCTIONAL ENZYME [INCLUDES: UDP... 348 5e-95 emb|CAC84690.1| (AJ306727) D-Ala:D-Lac ligase [Enterococcus faec... 347 1e-94 ref|NP_245081.1| (NC_002663) DdlB [Pasteurella multocida] >gi|13... 347 1e-94 ref|NP_225100.1| (NC_000922) Muramate-Ala Ligase & D-Ala-D-Ala L... 343 2e-93 ref|NP_459135.1| (NC_003197) D-alanine-D-alanine ligase B, affec... 343 2e-93 ref|NP_454742.1| (NC_003198) D-alanine:D-alanine ligase B [Salmo... 343 2e-93 emb|CAC84688.1| (AJ306726) D-Ala:D-Lac ligase [Enterococcus faec... 343 2e-93 ref|NP_414634.1| (NC_000913) D-alanine-D-alanine ligase B, affec... 342 2e-93 ref|NP_285788.1| (NC_002655) D-alanine-D-alanine ligase B, affec... 340 8e-93 pdb|1IOW| Complex Of Y216f D-Ala:d-Ala Ligase With Adp And A P... 340 1e-92 ref|NP_386277.1| (NC_003047) PROBABLE D-ALANINE--D-ALANINE LIGAS... 340 2e-92 ref|NP_404198.1| (NC_003143) D-alanine--D-alanine ligase B [Yers... 334 1e-90 ref|NP_212334.1| (NC_001318) D-alanine--D-alanine ligase (ddlA) ... 334 1e-90 ref|NP_103112.1| (NC_002678) D-alanyl-D-alanine ligase [Mesorhiz... 329 3e-89 ref|NP_252890.1| (NC_002516) D-alanine-D-alanine ligase A [Pseud... 324 8e-88 ref|NP_253100.1| (NC_002516) D-alanine--D-alanine ligase [Pseudo... 322 3e-87 ref|NP_520963.1| (NC_003295) PROBABLE D-ALANINE--D-ALANINE LIGAS... 317 1e-85 ref|NP_232962.1| (NC_002506) D-alanine--D-alanine ligase [Vibrio... 314 1e-84 ref|NP_355054.1| (NC_003062) AGR_C_3788p [Agrobacterium tumefaci... 313 1e-84 ref|NP_532764.1| (NC_003304) D-alanine:D-alanine ligase [Agrobac... 312 4e-84 gb|AAB62175.1| (U94527) vancomycin resistance protein B [Enteroc... 311 6e-84 pir||T51694 D-alanine--D-alanine ligase (EC 6.3.2.4) [imported] ... 309 4e-83 gb|AAB62174.1| (U94526) vancomycin resistance protein B [Enteroc... 308 6e-83 gb|AAB62176.1| (U94528) vancomycin resistance protein B [Enteroc... 307 9e-83 gb|AAK97387.1|AF363615_1 (AF363615) D-alanine:D-alanine ligase 2... 304 7e-82 gb|AAB49636.1| (U72704) vancomycin resistance protein [Enterococ... 304 1e-81 ref|NP_242487.1| (NC_002570) D-alanyl-D-alanine ligase A [Bacill... 302 4e-81 gb|AAD53933.1|AF179611_17 (AF179611) D-alanine:D-alanine ligase ... 300 1e-80 ref|NP_359970.1| (NC_003103) D-alanine--D-alanine ligase [EC:6.3... 296 2e-79 emb|CAA55651.1| (X79049) vanA2 [Oerskovia turbata] 294 1e-78 ref|NP_284760.1| (NC_003116) D-alanine--D-alanine ligase B [Neis... 293 1e-78 emb|CAB95026.1| (AJ237851) D-alanine-D-alanine ligase [Prochloro... 292 3e-78 sp|O51927|DDL_BUCAP D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 292 5e-78 ref|NP_273472.1| (NC_003112) D-alanine--D-alanine ligase [Neisse... 292 5e-78 ref|NP_220634.1| (NC_000963) D-ALANINE--D-ALANINE LIGASE (ddlB) ... 289 3e-77 ref|NP_228072.1| (NC_000853) D-alanine--D-alanine ligase [Thermo... 287 1e-76 ref|NP_539499.1| (NC_003317) D-ALANINE--D-ALANINE LIGASE [Brucel... 285 5e-76 ref|NP_213366.1| (NC_000918) D-alanine:D-alanine ligase [Aquifex... 283 2e-75 gb|AAB17900.1| (U39775) D-alanine:D-alanine ligase [Enterococcus... 283 2e-75 gb|AAA60989.1| (L29641) D-alanine-D-alanine ligase-related enzym... 283 2e-75 gb|AAA60988.1| (L29640) D-alanine-D-alanine ligase-related enzym... 282 4e-75 gb|AAF37343.1|AF170804_1 (AF170804) D-alanine:D-alanine ligase [... 279 3e-74 ref|NP_298089.1| (NC_002488) D-alanine--D-alanine ligase B [Xyle... 279 3e-74 gb|AAB17901.1| (U39777) D-alanine:D-alanine ligase [Enterococcus... 278 5e-74 ref|NP_421346.1| (NC_002696) D-alanine--D-alanine ligase B [Caul... 278 6e-74 gb|AAF37344.1|AF170805_1 (AF170805) D-alanine:D-alanine ligase [... 278 8e-74 gb|AAF37342.1|AF170803_1 (AF170803) D-alanine:D-alanine ligase [... 274 9e-73 gb|AAB17899.1| (U39778) D-alanine:D-alanine ligase [Enterococcus... 273 1e-72 gb|AAB41852.1| (U69163) D-Alanine:D-Alanine ligase [Streptococcu... 272 6e-72 gb|AAF37349.1|AF170810_1 (AF170810) D-alanine:D-alanine ligase [... 271 6e-72 gb|AAB17897.1| (U39774) D-alanine:D-alanine ligase [Enterococcus... 271 8e-72 gb|AAC16915.1| (U91914) D-alanine:D-alanine ligase [Streptococcu... 270 1e-71 gb|AAB41853.1| (U69164) D-Alanine:D-Alanine ligase [Streptococcu... 270 2e-71 gb|AAA24785.1| (L15304) vanB2 ORF [Enterococcus faecalis] 269 3e-71 gb|AAB41855.1| (U69166) D-Alanine:D-Alanine ligase [Streptococcu... 268 7e-71 gb|AAB62519.1| (U91912) D-alanine:D-alanine ligase [Streptococcu... 267 1e-70 gb|AAB62520.1| (U91913) D-alanine:D-alanine ligase [Streptococcu... 267 2e-70 gb|AAK28428.1|AF251259_1 (AF251259) D-alanine-D-X ligase VanD4 [... 266 2e-70 gb|AAF37348.1| (AF170809) D-alanine:D-alanine ligase [Enterococc... 266 2e-70 gb|AAB41856.1| (U69167) D-Alanine:D-Alanine ligase [Streptococcu... 263 2e-69 sp|P95803|DDL_STRMU PUTATIVE D-ALANINE--D-ALANINE LIGASE (D-ALAN... 262 4e-69 gb|AAB17898.1| (U39776) D-alanine:D-alanine ligase [Enterococcus... 261 6e-69 ref|NP_187496.1| (NC_003074) unknown protein [Arabidopsis thalia... 261 8e-69 gb|AAB41851.1| (U69162) D-Alanine:D-Alanine ligase [Streptococcu... 256 2e-67 ref|NP_281959.1| (NC_002163) putative D-alanine--D-alanine ligas... 252 4e-66 gb|AAF37347.1|AF170808_1 (AF170808) D-alanine:D-alanine ligase [... 251 5e-66 ref|NP_223393.1| (NC_000921) D-ALANINE--D-ALANINE LIGASE [Helico... 251 8e-66 ref|NP_207532.1| (NC_000915) D-alanine:D-alanine ligase A (ddlA)... 249 4e-65 gb|AAB41857.1| (U69168) D-Alanine:D-Alanine ligase [Streptococcu... 244 8e-64 pir||S36974 hypothetical protein 8 (atpB 5' region) - Synechococ... 243 3e-63 pir||PN0478 vancomycin resistance-conferring protein - Enterococ... 241 1e-62 gb|AAA60991.1| (L29639) ligase [Enterococcus flavescens] 240 2e-62 gb|AAD45667.1|AF136925_1 (AF136925) D-alanine-D-serine ligase [E... 233 2e-60 emb|CAA94438.1| (Z70527) D-alanine:D-alanine ligase-related prot... 232 5e-60 ref|NP_444059.1| (NC_000914) Y4sG [Rhizobium sp. NGR234] >gi|249... 231 6e-60 gb|AAA87682.1| (U08912) putative D-alanine:D-alanine ligase [Lac... 227 1e-58 gb|AAA87683.1| (U08913) putative D-alanine:D-alanine ligase [Lac... 223 2e-57 gb|AAA87681.1| (U08911) putative D-alanine:D-alanine ligase [Lac... 216 3e-55 emb|CAB64495.1| (AJ387982) D-alanine--D-alanine ligase [Streptoc... 205 6e-52 emb|CAB64494.1| (AJ387981) D-alanine--D-alanine ligase [Streptoc... 204 7e-52 emb|CAB64493.1| (AJ387980) D-alanine--D-alanine ligase [Streptoc... 204 8e-52 emb|CAA13256.1| (AJ232253) D-alanine D-alanine ligase [Streptoco... 204 1e-51 emb|CAA13247.1| (AJ232244) D-alanine D-alanine ligase [Streptoco... 204 1e-51 emb|CAB60643.1| (AJ252530) D-ala,D-ala ligase [Streptococcus pne... 204 1e-51 emb|CAB60645.1| (AJ252532) D-ala,D-ala ligase [Streptococcus pne... 204 1e-51 emb|CAA13255.1| (AJ232252) D-alanine D-alanine ligase [Streptoco... 203 2e-51 emb|CAA13261.1| (AJ232258) D-alanine D-alanine ligase [Streptoco... 203 2e-51 emb|CAA13269.1| (AJ232266) D-alanine D-alanine ligase [Streptoco... 203 3e-51 gb|AAA87680.1| (U08910) putative D-alanine:D-alanine ligase [Wei... 203 3e-51 emb|CAA13267.1| (AJ232264) D-alanine D-alanine ligase [Streptoco... 203 3e-51 emb|CAA13245.1| (AJ232242) D-alanine D-alanine ligase [Streptoco... 203 3e-51 emb|CAA13259.1| (AJ232256) D-alanine D-alanine ligase [Streptoco... 203 3e-51 emb|CAB64496.1| (AJ387983) D-alanine--D-alanine ligase [Streptoc... 203 3e-51 emb|CAB16964.1| (Z99839) D-alanine:D-alanine ligase [Streptococc... 203 3e-51 emb|CAA13246.1| (AJ232243) D-alanine D-alanine ligase [Streptoco... 203 3e-51 emb|CAB16966.1| (Z99841) D-alanine:D-alanine ligase [Streptococc... 203 3e-51 emb|CAB64497.1| (AJ387984) D-alanine--D-alanine ligase [Streptoc... 202 3e-51 emb|CAB60642.1| (AJ252529) D-ala,D-ala ligase [Streptococcus pne... 202 3e-51 emb|CAA13253.1| (AJ232250) D-alanine D-alanine ligase [Streptoco... 202 3e-51 emb|CAB16962.1| (Z99837) D-alanine:D-alanine ligase [Streptococc... 202 4e-51 emb|CAB60641.1| (AJ252528) D-ala,D-ala ligase [Streptococcus pne... 202 5e-51 emb|CAA13262.1| (AJ232259) D-alanine D-alanine ligase [Streptoco... 202 5e-51 emb|CAB16963.1| (Z99838) D-alanine:D-alanine ligase [Streptococc... 202 5e-51 emb|CAA13581.1| (AJ233888) D-alanine D-alanine ligase [Streptoco... 202 5e-51 emb|CAB16971.1| (Z99846) D-alanine:D-alanine ligase [Streptococc... 202 5e-51 emb|CAA13580.1| (AJ233887) D-alanine D-alanine ligase [Streptoco... 202 5e-51 emb|CAB60640.1| (AJ252527) D-ala,D-ala ligase [Streptococcus pne... 201 6e-51 emb|CAA13276.1| (AJ232273) D-alanine D-alanine ligase [Streptoco... 201 8e-51 emb|CAA13252.1| (AJ232249) D-alanine D-alanine ligase [Streptoco... 201 9e-51 emb|CAB16982.1| (Z99857) D-alanine:D-alanine ligase [Streptococc... 201 1e-50 emb|CAB16965.1| (Z99840) D-alanine:D-alanine ligase [Streptococc... 200 1e-50 emb|CAB60644.1| (AJ252531) D-ala,D-ala ligase [Streptococcus pne... 199 4e-50 emb|CAA13579.1| (AJ233886) D-alanine D-alanine ligase [Streptoco... 198 6e-50 gb|AAC83823.1| (AF098802) putative D-alanine:D-alanine ligase [P... 188 5e-47 gb|AAD20832.1| (AF125320) D-alanine:D-alanine ligase B homolog [... 184 1e-45 gb|AAF37346.1|AF170807_1 (AF170807) D-alanine:D-alanine ligase [... 181 7e-45 sp|P35660|DDL_ANACE D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 156 3e-37 gb|AAB49635.1| (U72705) vancomycin resistance protein [Enterococ... 153 2e-36 sp|Q92233|PUR6_CRYNE PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE (A... 151 1e-35 gb|AAB09711.1| (U70673) phosphoribosylaminoimidazole carboxylase... 151 1e-35 gb|AAB49637.1| (U72706) vancomycin resistance protein [Enterococ... 150 2e-35 gb|AAC98316.1| (AF112302) phosphoribosylaminoimidazole carboxyla... 150 2e-35 gb|AAF37345.1|AF170806_1 (AF170806) D-alanine:D-alanine ligase [... 145 7e-34 gb|AAB62172.1| (U94524) vancomycin resistance protein C2 [Entero... 141 1e-32 gb|AAB62173.1| (U94525) vancomycin resistance protein C2 [Entero... 140 2e-32 gb|AAB62171.1| (U94523) vancomycin resistance protein C2 [Entero... 140 3e-32 gb|AAB62170.1| (U94522) vancomycin resistance protein C2 [Entero... 136 4e-31 gb|AAB62169.1| (U94521) vancomycin resistance protein C2 [Entero... 135 6e-31 emb|CAC35262.1| (AJ290360) D-alanin-D-alanin ligase [Campylobact... 135 7e-31 emb|CAC35256.1| (AJ290354) D-alanin-D-alanin ligase [Campylobact... 135 7e-31 emb|CAC35254.1| (AJ290352) D-alanin-D-alanin ligase [Campylobact... 135 8e-31 emb|CAC35255.1| (AJ290353) D-alanin-D-alanin ligase [Campylobact... 135 9e-31 emb|CAC35265.1| (AJ290363) D-alanin-D-alanin ligase [Campylobact... 134 9e-31 emb|CAC35258.1| (AJ290356) D-alanin-D-alanin ligase [Campylobact... 134 9e-31 emb|CAC35260.1| (AJ290358) D-alanin-D-alanin ligase [Campylobact... 134 1e-30 emb|CAC35259.1| (AJ290357) D-alanin-D-alanin ligase [Campylobact... 133 2e-30 ref|NP_171808.1| (NC_003070) putative 3-methylcrotonyl-CoA carbo... 133 2e-30 emb|CAC35261.1| (AJ290359) D-alanin-D-alanin ligase [Campylobact... 132 6e-30 emb|CAC35263.1| (AJ290361) D-alanin-D-alanin ligase [Campylobact... 131 9e-30 dbj|BAB64425.1| (AB070701) vancomycin resistance protein C-2 [En... 131 1e-29 dbj|BAB64428.1| (AB070704) vancomycin resistance protein C-2 [En... 131 1e-29 dbj|BAB64420.1| (AB070696) vancomycin resistance protein C-2 [En... 129 5e-29 dbj|BAB64426.1| (AB070702) vancomycin resistance protein C-2 [En... 128 9e-29 dbj|BAB64423.1| (AB070699) vancomycin resistance protein C-2 [En... 127 1e-28 dbj|BAB64422.1| (AB070698) vancomycin resistance protein C-2 [En... 126 5e-28 pir||S62738 D-alanylalanine ligase homolog - Thermotoga maritima... 117 1e-25 ref|NP_187495.1| (NC_003074) hypothetical protein [Arabidopsis t... 106 5e-22 ref|NP_047031.1| (NC_001905) PCACA; L549.5 [Leishmania major] >g... 105 7e-22 emb|CAC11141.1| (AJ250581) NikS protein [Streptomyces tendae] 91 1e-17 ref|NP_348167.1| (NC_003030) Uncharacterized ATP-grasp enzyme [C... 91 2e-17 ref|NP_245985.1| (NC_002663) unknown [Pasteurella multocida] >gi... 89 8e-17 gb|AAK31311.1|AF324792_1 (AF324792) phosphoribosylaminoimidazole... 81 2e-14 Sequences not found previously or not previously below threshold: dbj|BAA99407.1| (AB029826) 3-methylcrotonyl-CoA carboxylase biot... 127 2e-28 ref|NP_064551.2| (NM_020166) methylcrotonoyl-Coenzyme A carboxyl... 127 2e-28 gb|AAK67986.1|AF297332_1 (AF297332) 3-methylcrotonyl-CoA carboxy... 127 2e-28 ref|NP_539980.1| (NC_003317) BIOTIN CARBOXYLASE [Brucella melite... 126 4e-28 ref|NP_076133.1| (NM_023644) methylcrotonoyl-Coenzyme A carboxyl... 119 6e-26 dbj|BAB25253.1| (AK007782) putative [Mus musculus] 118 7e-26 ref|NP_389706.1| (NC_000964) similar to biotin carboxylase [Baci... 116 5e-25 gb|AAA67356.1| (U12536) 3-methylcrotonyl-CoA carboxylase precurs... 114 1e-24 ref|NP_484982.1| (NC_003272) biotin carboxylase [Nostoc sp. PCC ... 114 2e-24 pir||T44813 biotin carboxylase (EC 6.3.4.14) yngH [imported] - B... 113 2e-24 ref|NP_442228.1| (NC_000911) biotin carboxylase [Synechocystis s... 113 3e-24 ref|NP_102052.1| (NC_002678) biotin carboxylase [Mesorhizobium l... 113 3e-24 gb|AAF57199.1| (AE003779) CG2118 gene product [Drosophila melano... 113 3e-24 ref|NP_251581.1| (NC_002516) probable biotin carboxylase/biotin ... 112 5e-24 ref|NP_534077.1| (NC_003305) propionyl-coenzyme A carboxylase, a... 112 5e-24 dbj|BAB01486.1| (AB034950) phosphoribosyl-5-aminoimidazole carbo... 112 6e-24 gb|AAF32338.1|AF218939_6 (AF218939) acetyl-CoA carboxylase [Baci... 112 6e-24 ref|NP_357031.1| (NC_003063) AGR_L_580GMp [Agrobacterium tumefac... 112 7e-24 ref|NP_354336.1| (NC_003062) AGR_C_2451p [Agrobacterium tumefaci... 111 1e-23 pir||T06360 methylcrotonoyl-CoA carboxylase (EC 6.4.1.4) biotin ... 110 2e-23 gb|AAA53140.1| (U08469) 3-methylcrotonyl-CoA carboxylase, biotin... 110 3e-23 ref|NP_437988.1| (NC_003078) putative propionyl-CoA carboxylase ... 109 5e-23 gb|AAD25800.1|AC006550_8 (AC006550) Identical to gb|U12536 3-met... 107 2e-22 gb|AAG45427.1|AF317651_4 (AF317651) pyruvate carboxylase ATP-bin... 106 3e-22 ref|NP_181305.1| (NC_003071) putative phosphoribosylaminoimidazo... 106 3e-22 emb|CAB87214.1| (AL163641) acetyl/propionyl CoA carboxylase alph... 106 3e-22 ref|NP_250702.1| (NC_002516) probable acyl-CoA carboxylase alpha... 106 3e-22 ref|NP_385425.1| (NC_003047) PROBABLE BIOTIN CARBOXYLASE PROTEIN... 106 4e-22 gb|AAL48287.1|AF452495_1 (AF452495) aminoimidazole ribonucleotid... 106 4e-22 ref|NP_539717.1| (NC_003317) PROPIONYL-COA CARBOXYLASE ALPHA CHA... 106 5e-22 ref|NP_471220.1| (NC_003212) phosphoribosylaminoimidazole carbox... 105 7e-22 ref|NP_241998.1| (NC_002570) biotin carboxylase [Bacillus halodu... 105 7e-22 ref|NP_107983.1| (NC_002678) 3-methylcrotonyl-CoA carboxylase bi... 104 1e-21 ref|NP_277017.1| (NC_000916) biotin carboxylase [Methanothermoba... 104 1e-21 ref|NP_009767.1| (NC_001134) Urea amidolyase (contains urea carb... 104 1e-21 ref|NP_217017.1| (NC_000962) accA1 [Mycobacterium tuberculosis H... 104 1e-21 gb|AAB92588.1| (AF038548) pyruvate carboxylase [Corynebacterium ... 104 2e-21 dbj|BAB16297.1| (AB039884) acetyl-CoA carboxylase biotin carboxy... 103 2e-21 ref|NP_282436.1| (NC_002163) biotin carboxylase [Campylobacter j... 103 2e-21 ref|NP_214014.1| (NC_000918) biotin carboxylase [Aquifex aeolicu... 103 3e-21 gb|AAB31500.1| (S72370) pyruvate carboxylase; pyruvate:carbon di... 102 4e-21 ref|NP_228257.1| (NC_000853) phosphoribosylaminoimidazole carbox... 102 5e-21 gb|AAB88214.1| (U59234) biotin carboxylase [Synechococcus sp. PC... 102 6e-21 ref|NP_505977.1| (NM_073576) pyruvate carboxylase [Caenorhabditi... 102 7e-21 ref|NP_518386.1| (NC_003295) PROBABLE ACYL-COA CARBOXYLASE ALPHA... 102 7e-21 ref|NP_243491.1| (NC_002570) pyruvate carboxylase [Bacillus halo... 102 7e-21 sp|P15567|PUR6_SCHPO PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE (A... 101 1e-20 ref|NP_372130.1| (NC_002758) acetyl-CoA carboxylase [Staphylococ... 101 1e-20 ref|NP_102581.1| (NC_002678) propionyl-CoA carboxylase alpha cha... 100 1e-20 gb|AAC41643.1| (M64926) urea amidolyase [Saccharomyces cerevisiae] 100 1e-20 ref|NP_000911.1| (NM_000920) pyruvate carboxylase precursor [Hom... 100 2e-20 sp|P11498|PYC_HUMAN Pyruvate carboxylase, mitochondrial precurso... 100 2e-20 pir||T07093 acetyl-CoA carboxylase (EC 6.4.1.2) biotin carboxyla... 100 3e-20 ref|NP_465299.1| (NC_003210) phosphoribosylaminoimidazole carbox... 100 3e-20 sp|P50504|PUR6_DEBOC PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE (A... 100 3e-20 pir||T02431 acetyl-CoA carboxylase (EC 6.4.1.2), biotin carboxyl... 100 3e-20 gb|AAF80469.1|AF163150_1 (AF163150) acetyl-CoA carboxylase [Glyc... 100 3e-20 emb|CAB57994.1| (AJ133372) phosphoribosylaminoimidazole carboxyl... 100 4e-20 pir||T06279 acetyl-CoA carboxylase (EC 6.4.1.2), biotin carboxyl... 99 4e-20 pir||T43735 pyruvate carboxylase (EC 6.4.1.1) [validated] - yell... 99 5e-20 ref|NP_032823.1| (NM_008797) pyruvate decarboxylase [Mus musculu... 99 7e-20 gb|AAD34740.1| (AF132152) unknown [Drosophila melanogaster] >gi|... 99 8e-20 ref|NP_253535.1| (NC_002516) biotin carboxylase [Pseudomonas aer... 99 8e-20 gb|AAG22289.1| (AE003831) BcDNA:GH06348 gene product [alt 1] [Dr... 98 9e-20 ref|NP_350153.1| (NC_003030) Biotin carboxylase [Clostridium ace... 98 1e-19 ref|NP_540842.1| (NC_003317) acetyl-CoA carboxylase alpha chain ... 98 1e-19 pir||S68252 pyruvate carboxylase (EC 6.4.1.1) precursor - rat >g... 98 1e-19 ref|NP_036876.1| (NM_012744) pyruvate carboxylase [Rattus norveg... 98 2e-19 ref|NP_248224.1| (NC_000909) biotin carboxylase (accC) [Methanoc... 97 2e-19 ref|NP_501777.1| (NM_069376) carbomoyl-phosphate carboxylase [Ca... 97 2e-19 ref|NP_207168.1| (NC_000915) biotin carboxylase (accC) [Helicoba... 97 2e-19 ref|NP_509293.1| (NM_076892) Propionyl-coA carboxylase alpha cha... 97 2e-19 ref|NP_248492.1| (NC_000909) phosphoribosylglycinamide formyltra... 97 2e-19 sp|O74197|PUR6_CANGA PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE (A... 97 3e-19 sp|Q01930|PUR6_PICME PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE (A... 97 3e-19 ref|NP_349267.1| (NC_003030) Pyruvate carboxylase, PYKA [Clostri... 97 3e-19 gb|AAC49742.1| (U75582) phosphoribosylaminoimidazole carboxylase... 96 4e-19 ref|NP_069058.1| (NC_000917) biotin carboxylase (acc) [Archaeogl... 96 5e-19 ref|NP_297342.1| (NC_002488) biotin carboxylase subunit of acety... 96 5e-19 gb|AAK14408.1| (AF349948) phosphoribosylaminoimidazole carboxyla... 96 7e-19 ref|NP_219627.1| (NC_000117) Biotin Carboxylase [Chlamydia trach... 95 8e-19 ref|NP_223728.1| (NC_000921) BIOTIN CARBOXYLASE [Helicobacter py... 95 8e-19 ref|NP_389369.1| (NC_000964) pyruvate carboxylase [Bacillus subt... 95 9e-19 gb|AAK60339.1| (AY034410) biotin carboxylase [Brassica napus] 95 1e-18 gb|AAF09095.1|AF068759_1 (AF068759) pyruvate carboxylase [Lactoc... 95 1e-18 sp|Q92210|PUR6_CANAL PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE (A... 95 1e-18 ref|NP_300241.1| (NC_002491) biotin carboxylase [Chlamydophila p... 94 1e-18 ref|NP_266934.1| (NC_002662) biotin carboxylase (EC 6.3.4.14) [L... 94 1e-18 ref|NP_000273.1| (NM_000282) Propionyl-Coenzyme A carboxylase, a... 94 2e-18 ref|NP_014771.1| (NC_001147) phosphoribosylamino-imidazole-carbo... 94 2e-18 gb|AAK25989.1|AF360279_1 (AF360279) putative biotin carboxylase ... 94 2e-18 gb|AAH06915.1|AAH06915 (BC006915) Similar to Propionyl Coenzyme ... 94 2e-18 ref|NP_198386.1| (NC_003076) acetyl-CoA carboxylase [Arabidopsis... 94 2e-18 ref|NP_293843.1| (NC_001263) acetyl-CoA carboxylase, biotin carb... 94 2e-18 ref|NP_214048.1| (NC_000918) pyruvate carboxylase n-terminal dom... 94 2e-18 gb|AAL02364.1| (AY046947) propionyl CoA-carboxylase alpha-subuni... 94 2e-18 dbj|BAA12072.1| (D83706) pyruvate carboxylase [Geobacillus stear... 94 2e-18 ref|NP_106581.1| (NC_002678) 3-methylcrotonyl-CoA carboxylase bi... 94 2e-18 ref|NP_437243.1| (NC_003078) putative methylcrotonoyl-CoA carbox... 94 3e-18 ref|NP_357130.1| (NC_003063) AGR_L_2704p [Agrobacterium tumefaci... 94 3e-18 ref|NP_224391.1| (NC_000922) Biotin Carboxylase [Chlamydophila p... 93 3e-18 ref|NP_407114.1| (NC_003143) biotin carboxylase [Yersinia pestis... 93 3e-18 ref|NP_254123.1| (NC_002516) probable biotin carboxylase subunit... 93 3e-18 gb|AAC44388.1| (U51439) pyruvate carboxylase [Rhizobium etli] 93 4e-18 ref|NP_274857.1| (NC_003112) acetyl-CoA carboxylase, biotin carb... 93 5e-18 ref|NP_533976.1| (NC_003305) 3-methylcrotonyl-CoA carboxylase al... 93 5e-18 emb|CAB09721.1| (Z97025) pyruvate carboxylase [Bacillus subtilis] 93 5e-18 ref|NP_420691.1| (NC_002696) acetyl-CoA carboxylase, biotin carb... 93 5e-18 ref|NP_106624.1| (NC_002678) hypothetical protein [Mesorhizobium... 93 6e-18 gb|AAG10491.1|AF279106_53 (AF279106) predicted acetyl-CoA carbox... 92 7e-18 ref|NP_214146.1| (NC_000918) biotin carboxylase [Aquifex aeolicu... 92 7e-18 ref|NP_249185.1| (NC_002516) probable acyl-CoA carboxylase subun... 92 8e-18 pir||S73055 pyc protein - Mycobacterium tuberculosis >gi|560527|... 92 8e-18 ref|NP_282187.1| (NC_002163) putative pyruvate carboxylase A sub... 92 8e-18 ref|NP_520908.1| (NC_003295) PROBABLE BIOTIN CARBOXYLASE PROTEIN... 92 9e-18 ref|NP_283408.1| (NC_003116) putative acetyl-CoA carboxylase bio... 92 1e-17 ref|NP_387384.1| (NC_003047) PROBABLE PYRUVATE CARBOXYLASE PROTE... 92 1e-17 ref|XP_011009.3| (XM_011009) methylcrotonoyl-Coenzyme A carboxyl... 91 1e-17 ref|NP_217483.1| (NC_000962) pca [Mycobacterium tuberculosis H37... 91 1e-17 ref|NP_215488.1| (NC_000962) accA2 [Mycobacterium tuberculosis H... 91 1e-17 emb|CAB59603.1| (AL132662) pyruvate carboxylase [Streptomyces co... 91 1e-17 ref|NP_104954.1| (NC_002678) pyruvate carboxylase [Mesorhizobium... 91 2e-17 ref|NP_441123.1| (NC_000911) glycinamide ribonucleotide transfor... 91 2e-17 ref|NP_296778.1| (NC_002620) acetyl-coenzyme A carboxylase, biot... 91 2e-17 pir||A34337 propionyl-CoA carboxylase (EC 6.4.1.3) alpha chain p... 91 2e-17 ref|NP_371638.1| (NC_002758) pyruvate carboxylase [Staphylococcu... 91 2e-17 gb|AAG30191.1| (AF293442) biotin carboxylase [Streptomyces sp. R... 91 2e-17 ref|NP_000655.1| (NM_000664) acetyl-Coenzyme A carboxylase alpha... 91 2e-17 ref|NP_457756.1| (NC_003198) biotin carboxylase [Salmonella ente... 91 2e-17 ref|NP_388105.1| (NC_000964) phosphoribosylglycinamide formyltra... 91 2e-17 ref|NP_420982.1| (NC_002696) propionyl-CoA carboxylase, alpha su... 90 3e-17 gb|AAF04493.2|AF157612_1 (AF157612) acetyl-CoA carboxylase 1 pre... 90 3e-17 ref|NP_344948.1| (NC_003028) acetyl-CoA carboxylase, biotin carb... 90 3e-17 pir||S47267 5'-phosphoribosyl-1-glycinamide transformylase T - B... 90 3e-17 ref|NP_071529.1| (NM_022193) acetyl-coenzyme A carboxylase [Ratt... 90 4e-17 ref|NP_241490.1| (NC_002570) phosphoribosylaminoimidazole carbox... 89 4e-17 ref|NP_464882.1| (NC_003210) acetyl-CoA carboxylase subunit (bio... 89 5e-17 ref|NP_357979.1| (NC_003098) Biotin carboxylase (a subunit of ac... 89 5e-17 ref|NP_229950.1| (NC_002505) acetyl-CoA carboxylase, biotin carb... 89 7e-17 ref|NP_470730.1| (NC_003212) acetyl-CoA carboxylase subunit (bio... 89 8e-17 ref|NP_539184.1| (NC_003317) PYRUVATE CARBOXYLASE [Brucella meli... 89 8e-17 ref|NP_371589.1| (NC_002758) phosphoribosylaminoimidazole carbox... 89 8e-17 pir||S41121 acetyl-CoA carboxylase (EC 6.4.1.2) - human >gi|4523... 88 1e-16 ref|NP_417722.1| (NC_000913) acetyl CoA carboxylase, biotin carb... 88 1e-16 gb|AAA23748.1| (M79446) biotin carboxylase [Escherichia coli] 88 1e-16 ref|NP_245990.1| (NC_002663) Pur [Pasteurella multocida] >gi|127... 88 1e-16 sp|P11029|COAC_CHICK ACETYL-COA CARBOXYLASE (ACC) [INCLUDES: BIO... 88 1e-16 pir||S71006 biotin carboxylase protein A1 - Saccharopolyspora er... 88 1e-16 sp|Q9TTS3|COA1_BOVIN ACETYL-COA CARBOXYLASE 1 (ACC-ALPHA) [INCLU... 88 1e-16 sp|Q28559|COA1_SHEEP ACETYL-COA CARBOXYLASE 1 (ACC-ALPHA) [INCLU... 88 1e-16 ref|NP_312155.1| (NC_002695) acetyl CoA carboxylase biotin carbo... 88 1e-16 pir||S71009 biotin carboxylase protein A2 - Saccharopolyspora er... 88 2e-16 ref|NP_360596.1| (NC_003103) propionyl-CoA carboxylase alpha cha... 88 2e-16 ref|NP_372050.1| (NC_002758) acetyl-CoA carboxylase [Staphylococ... 88 2e-16 gb|AAA88512.1| (M22631) alpha-propionyl-CoA carboxylase (EC 6.4.... 88 2e-16 ref|NP_220985.1| (NC_000963) PROPIONYL-COA CARBOXYLASE ALPHA CHA... 88 2e-16 ref|NP_444046.1| (NC_000914) Y4rH [Rhizobium sp. NGR234] >gi|249... 88 2e-16 prf||2009329A urea amidolyase [Pichia jadinii] 88 2e-16 sp|P14882|PCCA_RAT PROPIONYL-COA CARBOXYLASE ALPHA CHAIN, MITOCH... 87 2e-16 emb|CAB48407.1| (AJ243652) urea amidolyase homologue [Pseudomona... 87 2e-16 ref|NP_289824.1| (NC_002655) acetyl CoA carboxylase, biotin carb... 87 2e-16 gb|AAK53061.1| (AF322179) nikkomycin biosynthesis protein SanS [... 87 2e-16 ref|NP_485342.1| (NC_003272) phosphoribosylglycinamide formyltra... 86 4e-16 ref|NP_420636.1| (NC_002696) urea amidolyase-related protein [Ca... 86 5e-16 emb|CAC19838.1| (AJ009972) pyruvate carboxylase [Aspergillus niger] 86 5e-16 pdb|1DV2|A Chain A, The Structure Of Biotin Carboxylase, Mutant ... 86 8e-16 gb|AAG30411.1|AF262949_2 (AF262949) pyruvate carboxylase [Mycoba... 85 8e-16 ref|NP_356380.1| (NC_003063) AGR_L_1177p [Agrobacterium tumefaci... 85 1e-15 ref|NP_388525.1| (NC_000964) phosphoribosylaminoimidazole carbox... 84 1e-15 gb|AAC69197.1| (AF097728) pyruvate carboxylase [Aspergillus terr... 84 1e-15 ref|NP_243653.1| (NC_002570) acetyl-CoA carboxylase biotin carbo... 84 2e-15 ref|NP_246028.1| (NC_002663) AccC [Pasteurella multocida] >gi|12... 84 2e-15 ref|NP_269768.1| (NC_002737) putative acetyl-CoA carboxylase bio... 84 2e-15 dbj|BAA22049.1| (AB006759) subunit II of phosphoribosyl aminoimi... 84 2e-15 pir||T06565 acetyl-CoA carboxylase (EC 6.4.1.2) biotin carboxyla... 84 2e-15 sp|Q54975|PURK_SYNP7 PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE AT... 84 2e-15 ref|NP_486782.1| (NC_003272) phosphoribosyl aminoimidazole carbo... 84 2e-15 sp|P46927|PURT_PASHA PROBABLE PHOSPHORIBOSYLGLYCINAMIDE FORMYLTR... 84 2e-15 ref|NP_252440.1| (NC_002516) phosphoribosylglycinamide formyltra... 84 2e-15 ref|NP_420971.1| (NC_002696) acetyl/propionyl-CoA carboxylase, a... 84 2e-15 ref|NP_355659.1| (NC_003062) AGR_C_4940p [Agrobacterium tumefaci... 84 2e-15 ref|NP_106830.1| (NC_002678) putative carboxylase [Mesorhizobium... 84 3e-15 ref|NP_269044.1| (NC_002737) putative carbamoylphosphate synthet... 84 3e-15 dbj|BAA93643.1| (AB025973) biotin carboxylase [Lactobacillus pla... 84 3e-15 ref|NP_232019.1| (NC_002505) carbamoyl-phosphate synthase, large... 83 3e-15 ref|NP_390314.1| (NC_000964) acetyl-CoA carboxylase subunit (bio... 83 4e-15 gb|AAG37836.1|AF295372_1 (AF295372) pyruvate carboxylase [Danio ... 83 4e-15 sp|P55195|PUR6_VIGAC PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE, C... 83 5e-15 ref|NP_439133.1| (NC_000907) acetyl-CoA carboxylase, biotin carb... 83 5e-15 gb|AAA34407.1| (M58324) phosphoribosylaminoimidazole carboxylase... 82 1e-14 sp|P49787|ACCC_BACSU BIOTIN CARBOXYLASE (A SUBUNIT OF ACETYL-COA... 82 1e-14 ref|NP_344603.1| (NC_003028) phosphoribosylaminoimidazole carbox... 82 1e-14 ref|NP_274053.1| (NC_003112) phosphoribosylaminoimidazole carbox... 81 1e-14 ref|NP_357648.1| (NC_003098) Phosphoribosyl glucinamide formyltr... 81 1e-14 ref|NP_522501.1| (NC_003296) PUTATIVE BIOTIN CARBOXYLASE PROTEIN... 81 2e-14 ref|NP_356721.1| (NC_003063) AGR_L_1864p [Agrobacterium tumefaci... 81 2e-14 ref|NP_142302.1| (NC_000961) phosphoribosylglycinamide formyl tr... 80 3e-14 ref|NP_345739.1| (NC_003028) carbamoyl-phosphate synthase, large... 80 4e-14 ref|NP_358746.1| (NC_003098) Carbamoylphosphate synthase (ammoni... 80 4e-14 emb|CAA42544.1| (X59890) pyruvate carboxylase [Saccharomyces cer... 80 4e-14 ref|NP_127315.1| (NC_000868) PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRA... 79 5e-14 ref|NP_389435.1| (NC_000964) carbamoyl-phosphate synthetase (cat... 79 5e-14 emb|CAA70282.1| (Y09061) acetyl-CoA carboxylase, biotin carboxyl... 79 6e-14 ref|NP_174849.1| (NC_003070) acetyl-CoA carboxylase, putative [A... 79 6e-14 dbj|BAA07012.1| (D34630) acetyl-CoA carboxylase [Arabidopsis tha... 79 6e-14 gb|AAF18638.2|AC006228_9 (AC006228) F5J5.19 [Arabidopsis thaliana] 79 6e-14 ref|NP_349251.1| (NC_003030) Carbamoylphosphate synthase large s... 79 6e-14 ref|NP_470397.1| (NC_003212) highly similar to pyruvate carboxyl... 79 7e-14 ref|NP_371727.1| (NC_002758) carbamoyl-phosphate synthase large ... 79 7e-14 ref|NP_009777.1| (NC_001134) converts pyruvate to oxaloacetate; ... 79 7e-14 gb|AAC41645.1| (L27074) acetyl-CoA carboxylase [Arabidopsis thal... 79 7e-14 ref|NP_243402.1| (NC_002570) carbamoyl-phosphate synthetase (cat... 79 7e-14 ref|NP_279655.1| (NC_002607) phosphoribosylaminoimidazole carbox... 79 9e-14 emb|CAB44982.1| (AJ242842) putative phosphoribosylaminoimidazole... 79 9e-14 ref|NP_268449.1| (NC_002737) phosphoribosylaminoimidazole carbox... 79 9e-14 ref|NP_378308.1| (NC_003106) 400aa long hypothetical phosphoribo... 78 1e-13 ref|NP_464597.1| (NC_003210) highly similar to pyruvate carboxyl... 78 1e-13 pir||T39734 pyruvate carboxylase (EC 6.4.1.1) [similarity] - fis... 78 1e-13 dbj|BAA11239.1| (D78170) pyruvate carboxylase [Schizosaccharomyc... 78 1e-13 ref|NP_284002.1| (NC_003116) putative phosphoribosylaminoimidazo... 78 1e-13 emb|CAB56843.1| (X99978) carbamoyl-phosphate synthase large subu... 78 1e-13 sp|P77886|CARB_LACPL CARBAMOYL-PHOSPHATE SYNTHASE, PYRIMIDINE-SP... 78 1e-13 emb|CAB89432.1| (AL354048) phosphoribosylaminoimidazole carboxyl... 78 2e-13 ref|NP_301455.1| (NC_002677) putative carbamoyl-phosphate syntha... 77 2e-13 gb|AAD37851.1|AF126429_1 (AF126429) JadJ [Streptomyces venezuelae] 77 2e-13 pir||A64472 carbamoyl-phosphate synthase, large chain (EC 6.3.-.... 77 2e-13 ref|NP_248381.1| (NC_000909) carbamoyl-phosphate synthase, mediu... 77 3e-13 ref|NP_285633.1| (NC_001264) carboxylase [Deinococcus radioduran... 77 3e-13 ref|NP_267667.1| (NC_002662) phosphoribosylaminoimidazole carbox... 77 3e-13 ref|NP_244521.1| (NC_002570) BH3654~unknown conserved protein [B... 77 4e-13 sp|P78992|PYC_PICPA PYRUVATE CARBOXYLASE (PYRUVIC CARBOXYLASE) (... 77 4e-13 ref|NP_298397.1| (NC_002488) carbamoyl-phosphate synthase large ... 76 4e-13 ref|NP_493922.1| (NM_061521) acetyl-CoA carboxylase [Caenorhabdi... 76 4e-13 dbj|BAA15655.1| (D90827) Phosphoribosylglycinamide formyltransfe... 76 4e-13 emb|CAA04376.1| (AJ000883) purK [Lactococcus lactis] 76 4e-13 dbj|BAA15657.1| (D90828) Phosphoribosylglycinamide formyltransfe... 76 4e-13 ref|NP_416363.1| (NC_000913) phosphoribosylglycinamide formyltra... 76 4e-13 ref|NP_248384.1| (NC_000909) carbamoyl-phosphate synthase, large... 76 5e-13 gb|AAA34843.1| (J03889) pyruvate carboxylase (EC 6.4.1.1) [Sacch... 76 5e-13 ref|NP_280547.1| (NC_002607) carbamoyl-phosphate synthase large ... 76 5e-13 pir||T44419 carbamoyl-phosphate synthase (glutamine-hydrolyzing)... 76 5e-13 ref|NP_460840.1| (NC_003197) phosphoribosylglycinamide formyltra... 76 5e-13 ref|NP_274851.1| (NC_003112) carbamoyl-phosphate synthase, large... 76 5e-13 ref|NP_456451.1| (NC_003198) phosphoribosylglycinamide formyltra... 76 5e-13 ref|NP_011453.1| (NC_001139) converts pyruvate to oxaloacetate; ... 76 5e-13 gb|AAF59156.1| (AE003839) CG8723 gene product [Drosophila melano... 76 6e-13 ref|NP_230873.1| (NC_002505) phosphoribosylglycinamide formyltra... 76 7e-13 ref|NP_283414.1| (NC_003116) carbamoyl phosphate synthase large ... 76 7e-13 ref|NP_217793.1| (NC_000962) purK [Mycobacterium tuberculosis H3... 76 8e-13 ref|NP_376481.1| (NC_003106) 513aa long hypothetical biotin carb... 75 9e-13 gb|AAB67843.1| (U40341) carbamoyl phosphate synthetase large cha... 75 9e-13 pir||T09538 acetyl-CoA carboxylase (EC 6.4.1.2) - alfalfa >gi|49... 75 1e-12 ref|NP_288286.1| (NC_002655) phosphoribosylglycinamide formyltra... 75 1e-12 ref|NP_214438.1| (NC_000918) carbamoyl-phosphate synthase large ... 75 1e-12 ref|NP_266825.1| (NC_002662) pyruvate carboxylase (6.4.1.1) [Lac... 75 1e-12 ref|NP_174283.1| (NC_003070) carbamoylphosphate synthetase, puta... 74 1e-12 ref|NP_519642.1| (NC_003295) PROBABLE CARBAMOYL-PHOSPHATE SYNTHA... 74 2e-12 emb|CAC22142.1| (AL512902) putative acyl-CoA carboxylase complex... 74 2e-12 pir||T42202 probable acyl-CoA carboxylase complex A chain - Stre... 74 2e-12 sp|P46537|CARB_BACCL CARBAMOYL-PHOSPHATE SYNTHASE, PYRIMIDINE-SP... 74 2e-12 emb|CAC21629.1| (AL512667) putative acyl-CoA carboxylase complex... 74 2e-12 ref|NP_293750.1| (NC_001263) phosphoribosylaminoimidazole carbox... 74 2e-12 gb|AAB40890.1| (U35023) acyl coenzyme A carboxylase [Corynebacte... 74 2e-12 pir||T06162 acetyl-CoA carboxylase (EC 6.4.1.2) - wheat (fragmen... 74 3e-12 gb|AAA68280.1| (M27174) carbamyl phosphate synthetase [Saccharom... 74 3e-12 ref|NP_012405.1| (NC_001142) First and second steps of pyrimidin... 74 3e-12 emb|CAA60825.1| (X87371) carbamyl phosphate synthetase [Saccharo... 74 3e-12 gb|AAC39331.1| (AF029896) acetyl-coenzyme A carboxylase [Triticu... 74 3e-12 pir||T06161 acetyl-CoA carboxylase (EC 6.4.1.2) - wheat >gi|2827... 73 3e-12 ref|NP_472240.1| (NC_003212) similar to gamma-glutamylcysteine s... 73 3e-12 emb|CAC19876.1| (AJ131866) acetyl-CoA carboxylase [Brassica napus] 73 4e-12 pir||T44290 biotin carboxylase (EC 6.3.4.14) [imported] - Sulfol... 72 6e-12 pir||T07923 acetyl-CoA carboxylase (EC 6.4.1.2) A - rape (fragme... 72 6e-12 pir||A57710 acetyl-CoA carboxylase (EC 6.4.1.2) - wheat >gi|5143... 72 6e-12 gb|AAC49275.1| (U39321) acetyl-CoA carboxylase [Triticum aestivu... 72 6e-12 ref|NP_389006.1| (NC_000964) carbamoyl-phosphate transferase-arg... 72 6e-12 gb|AAD43968.1|AF119250_1 (AF119250) carbamoyl-phosphate syntheta... 72 8e-12 gb|AAC78719.1| (U43091) carbamoylphosphate synthetase heavy subu... 72 8e-12 ref|NP_356867.1| (NC_003063) AGR_L_2157p [Agrobacterium tumefaci... 72 8e-12 ref|NP_534249.1| (NC_003305) phosphoribosylaminoimidazole carbox... 72 8e-12 ref|NP_108021.1| (NC_002678) similar to ribosomal protein S6-glu... 72 9e-12 emb|CAB45017.1| (AJ242839) putative phosphoribosylaminoimidazole... 72 1e-11 pir||T42206 probable acyl-CoA carboxylase complex A chain - Stre... 72 1e-11 ref|NP_250091.1| (NC_002516) probable pyruvate carboxylase [Pseu... 72 1e-11 >ref|NP_286119.1| (NC_002655) Z0477 gene product [Escherichia coli O157:H7 EDL933] ref|NP_308458.1| (NC_002695) D-alanine-D-alanine ligase A [Escherichia coli O157:H7] ref|NP_414915.1| (NC_000913) D-alanine-D-alanine ligase A [Escherichia coli K12] sp|P23844|DDLA_ECOLI D-ALANINE--D-ALANINE LIGASE A (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||CEECDA D-alanine--D-alanine ligase (EC 6.3.2.4) A - Escherichia coli gb|AAA23671.1| (M58467) D-alanine:D-alanine ligase A [Escherichia coli] gb|AAB18104.1| (U73857) D-alanine--D-alanine ligase A [Escherichia coli] gb|AAC73484.1| (AE000144) D-alanine-D-alanine ligase A [Escherichia coli K12] gb|AAG54727.1|AE005217_5 (AE005217) Z0477 gene product [Escherichia coli O157:H7 EDL933] dbj|BAB33854.1| (AP002551) D-alanine-D-alanine ligase A [Escherichia coli O157:H7] Length = 364 Score = 534 bits (1377), Expect = e-151 Identities = 364/364 (100%), Positives = 364/364 (100%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN Sbjct: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML Sbjct: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL Sbjct: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ Sbjct: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR Sbjct: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL Sbjct: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 Query: 361 KTTM 364 KTTM Sbjct: 361 KTTM 364 >ref|NP_454975.1| (NC_003198) D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica serovar Typhi] ref|NP_459375.1| (NC_003197) D-alanine-D-alanine ligase A [Salmonella typhimurium LT2] sp|P15051|DDLA_SALTY D-alanine--D-alanine ligase A (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) pir||CEEBDT D-alanine--D-alanine ligase (EC 6.3.2.4) A - Salmonella typhimurium gb|AAA27056.1| (M20793) D-alanine:D-alanine ligase (EC 6.3.2.4) [Salmonella typhimurium] gb|AAL19334.1| (AE008713) D-alanine-D-alanine ligase A [Salmonella typhimurium LT2] emb|CAD08835.1| (AL627266) D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica serovar Typhi] Length = 364 Score = 523 bits (1349), Expect = e-148 Identities = 327/364 (89%), Positives = 344/364 (93%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDK+RFDVVLLGIDK GQWHV+DA NYL N Sbjct: 1 MAKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQN 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 ADDPAHIALRPSA SLAQVPGKH+HQLI+AQNGQPLPTVDVIFPIVHGTLGEDGSLQGML Sbjct: 61 ADDPAHIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 RVANLPFVGSDVL+SAACMDKDV KRLLRDAGLNIAPFITLTR NRH SFAEVES+LGL Sbjct: 121 RVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGL 180 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 PLFVKPANQGSSVGVSKV +E QY AV LAFEFDHKV+VEQGIKGREIECAVLGNDNPQ Sbjct: 181 PLFVKPANQGSSVGVSKVANEAQYQQAVALAFEFDHKVVVEQGIKGREIECAVLGNDNPQ 240 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 ASTCGEIVL S+FYAYDTKYID++GA+VVVPA I E+NDKIRAIA+QAYQTLGCAGMAR Sbjct: 241 ASTCGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMAR 300 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 VDVFLT +NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLI+RLIELALERH A+NAL Sbjct: 301 VDVFLTADNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELALERHTANNAL 360 Query: 361 KTTM 364 KTTM Sbjct: 361 KTTM 364 >sp|Q47827|DDL_ENTHR D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAB17904.1| (U39788) D-alanine:D-alanine ligase [Enterococcus hirae] Length = 358 Score = 466 bits (1199), Expect = e-130 Identities = 141/358 (39%), Positives = 213/358 (59%), Gaps = 10/358 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ +++GG+SAEH+VS+ SA ++++AI + + V L+ I K+GQW + + Sbjct: 1 MKITLLYGGRSAEHDVSVLSAFSVLNAIYYTYYQVQLIFISKEGQWVKGPLLTEKPTSKE 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 H+ PS G+ G+ ++FP++HG GEDG++QG L Sbjct: 61 DLHLTWDPSGKVTDGFTGR------VINPGEIKEEGTIVFPVLHGPNGEDGTIQGFLETL 114 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRHNISFAEVESKLGL 180 NLP+VG+ VL SA MDK +TK +L+ AG+ P++ + + F + E L Sbjct: 115 NLPYVGAGVLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKIFDQCEGSLLY 174 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+FVKPAN GSSVG+SK + E+ A+ LA+++D + IVEQGI+ REIE AVLGN++ + Sbjct: 175 PMFVKPANMGSSVGISKAENREELQNALALAYQYDSRAIVEQGIEAREIEVAVLGNEDVR 234 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 + GE+V FY YD KYI + ++ +PA + E+ K + A AY LG +G++R Sbjct: 235 TTLPGEVVKDVAFYDYDAKYI-NNKIEMQIPAEVPEEVYQKAQEYAKIAYTMLGGSGLSR 293 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 D FLT +NE+ +NE+NT+PGFT SMYP LW+ GL Y DLI LI+L + R Sbjct: 294 CDFFLTNKNELFLNELNTMPGFTQFSMYPLLWENMGLKYGDLIEELIQLGINRFNQRQ 351 >gb|AAB17902.2| (U39790) D-alanine:D-alanine ligase [Enterococcus faecium] Length = 358 Score = 465 bits (1197), Expect = e-130 Identities = 139/358 (38%), Positives = 215/358 (59%), Gaps = 10/358 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ +++GG+SAEHEVS+ SA ++++AI + + V L+ I K+GQW + D Sbjct: 1 MKITLLYGGRSAEHEVSILSAFSVLNAIYYNYYQVQLVFITKEGQWVKGPLLTEKPASKD 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 H++ PS + GK G+ ++FP++HG GEDG++QG L Sbjct: 61 VLHLSWDPSGQTEEGFTGK------VINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETL 114 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRHNISFAEVESKLGL 180 N+P+VG+ VL SA MDK +TK +L+ AG+ P++ + + F + E L Sbjct: 115 NMPYVGAGVLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLY 174 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+FVKPAN GSSVG++K + E+ A+ A+++D + IVEQGI+ REIE AVLGN++ + Sbjct: 175 PMFVKPANMGSSVGITKAENREELQNALATAYQYDSRAIVEQGIEAREIEVAVLGNEDVR 234 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 + GE+V FY Y+ KYI + ++ +PA + E+ K + A AY LG +G++R Sbjct: 235 TTLPGEVVKDVAFYDYEAKYI-NNKIEMQIPAEVPEEVYQKAQEYAKLAYTMLGGSGLSR 293 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 D FLT +NE+ +NE+N++PGFT SMYP LW+ GL Y DLI LI+L + R+ Sbjct: 294 CDFFLTNKNELFLNELNSMPGFTEFSMYPLLWENMGLKYGDLIEELIQLGMNRYHQRQ 351 >gb|AAG49141.1|AF215736_1 (AF215736) D-alanine:D-alanine ligase [Enterococcus faecium] Length = 358 Score = 461 bits (1187), Expect = e-129 Identities = 138/358 (38%), Positives = 214/358 (59%), Gaps = 10/358 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ +++GG+SA HEVS+ SA ++++AI + + V L+ I K+GQW + D Sbjct: 1 MKITLLYGGRSAGHEVSILSAFSVLNAIYYNYYQVQLVFITKEGQWVKGPLLTEKPASKD 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 H++ PS + GK G+ ++FP++HG GEDG++QG L Sbjct: 61 VLHLSWDPSGQTEEGFTGK------VINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETL 114 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRHNISFAEVESKLGL 180 N+P+VG+ VL SA MDK +TK +L+ AG+ P++ + + F + E L Sbjct: 115 NMPYVGAGVLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLY 174 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+FVKPAN GSSVG++K + E+ A+ A+++D + IVEQGI+ REIE AVLGN++ + Sbjct: 175 PMFVKPANMGSSVGITKAENREELQNALATAYQYDSRAIVEQGIEAREIEVAVLGNEDVR 234 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 + GE+V FY Y+ KYI + ++ +PA + E+ K + A AY LG +G++R Sbjct: 235 TTLPGEVVKDVAFYDYEAKYI-NNKIEMQIPAEVPEEVYQKAQEYAKLAYTMLGGSGLSR 293 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 D FLT +NE+ +NE+N++PGFT SMYP LW+ GL Y DLI LI+L + R+ Sbjct: 294 CDFFLTNKNELFLNELNSMPGFTEFSMYPLLWENMGLKYGDLIEELIQLGMNRYHQRQ 351 >sp|Q47758|DDL_ENTFA D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) Length = 348 Score = 432 bits (1112), Expect = e-120 Identities = 138/354 (38%), Positives = 213/354 (59%), Gaps = 10/354 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ +++GG+S EH+VS+ SA ++++AI + V L+ I K GQW + + Sbjct: 1 MKIILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKE 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 H+ + + GK + ++FP++HG GEDG++QG + Sbjct: 61 VLHLTWAQTPEETGEFSGKRI------SPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETI 114 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN---RHNISFAEVESKLGL 180 N+P+VG+ VLAS MDK +TK LL+ G+ PF+ + R++ F + E L Sbjct: 115 NMPYVGAGVLASVNAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIY 174 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+FVKPAN GSSVG+SKV + E+ A++ AF +D + IVEQGI+ REIE A+LGN++ + Sbjct: 175 PVFVKPANMGSSVGISKVENREELQEALEEAFRYDARAIVEQGIEAREIEVAILGNEDVR 234 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 + GE+V FY YD KYI + ++ +PA + E+ + + A +AY L +G++R Sbjct: 235 TTLPGEVVKDVAFYDYDAKYI-NNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSR 293 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 D FLT +NE+ +NE+NT+PGFT+ SMYP LW+ GL Y+DLI LI+LAL R Sbjct: 294 CDFFLTSKNELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLALNRF 347 >gb|AAC43218.1| (U00457) D-alanine:D-alanine ligase-related protein [Enterococcus faecalis] prf||2007289B D-Ala D-Ala ligase [Enterococcus faecalis] Length = 348 Score = 431 bits (1109), Expect = e-120 Identities = 139/354 (39%), Positives = 213/354 (59%), Gaps = 10/354 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 L++ +++GG+S EH+VS+ SA ++++AI + V L+ I K GQW + + Sbjct: 1 LKIILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKE 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 H+ + + GK + ++FP++HG GEDG++QG + Sbjct: 61 VLHLTWAQTPEETGEFSGKRI------SPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETI 114 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN---RHNISFAEVESKLGL 180 N+P+VG+ VLAS MDK +TK LL+ G+ PF+ + R++ F + E L Sbjct: 115 NMPYVGAGVLASVNAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIY 174 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+FVKPAN GSSVG+SKV + E+ A++ AF +D + IVEQGI+ REIE A+LGN++ + Sbjct: 175 PVFVKPANMGSSVGISKVENREELQEALEEAFRYDARAIVEQGIEAREIEVAILGNEDVR 234 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 + GE+V FY YD KYI + ++ +PA + E+ + + A +AY L +G++R Sbjct: 235 TTLPGEVVKDVAFYDYDAKYI-NNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSR 293 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 D FLT +NE+ +NE+NT+PGFT+ SMYP LW+ GL Y+DLI LI+LAL R Sbjct: 294 CDFFLTSKNELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLALNRF 347 >sp|Q06893|VANB_ENTFC VANCOMYCIN B-TYPE RESISTANCE PROTEIN VANB (VANB LIGASE) (D-ALANINE--D-LACTATE LIGASE) gb|AAC43217.1| (U00456) D-alanine:D-alanine ligase-related protein induced by vancomycin [Enterococcus faecalis] gb|AAB05627.1| (U35369) D-Ala:D-Lac ligase [Enterococcus faecalis] prf||2007289A D-Ala lactate ligase [Enterococcus faecalis] Length = 342 Score = 424 bits (1091), Expect = e-118 Identities = 130/358 (36%), Positives = 205/358 (56%), Gaps = 21/358 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K++V I+FGG S EH+VS++SA I I+ +FD +GI K G W + Sbjct: 1 MNKIKVAIIFGGCSEEHDVSVKSAIEIAANINTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGM 119 AD + P + H L+ + + +DV FP++HG GEDG++QG+ Sbjct: 61 AD----------SLPAIFSPDRKTHGLLVMKEREYETRRIDVAFPVLHGKCGEDGAIQGL 110 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 111 FELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIEKGDKPE------ARTLT 164 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN-DN 238 P+FVKPA GSS GV+KV S E+ A++ A ++D K+++EQ I G E+ CAV+GN D+ Sbjct: 165 YPVFVKPARSGSSFGVTKVNSTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDD 224 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L+ + + E G++ ++VPA I E ++++ A + Y+ LGC Sbjct: 225 LIVGEVDQIRLSHGIFRIHQENEPEKGSENAMIIVPADIPVEERNRVQETAKKVYRVLGC 284 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+ARVD+FL + +V+NE+NTLPGFT+ S YP++ A+G+ LI LI LA+ER Sbjct: 285 RGLARVDLFLQEDGGIVLNEVNTLPGFTSYSRYPRMAAAAGITLPALIDSLITLAIER 342 >emb|CAB61227.1| (Y15704) vana protein [Bacillus circulans] Length = 343 Score = 424 bits (1091), Expect = e-118 Identities = 129/357 (36%), Positives = 201/357 (56%), Gaps = 20/357 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I IDK +++ + +GI K G W + + Sbjct: 1 MNRIKVAILFGGCSEEHDVSVKSAIEIAANIDKEKYETLYIGITKSGVWKMCEKPCVEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGM 119 D+ L P K H L+ +N + + VDV F ++HG GEDGS+QG+ Sbjct: 61 NDNCCSAVLS---------PDKKMHGLLVKKNHEYEIDHVDVAFSVLHGKSGEDGSIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +PFVG D+ +SA CMDK +T + +AG+ F + ++ + Sbjct: 112 FELSGIPFVGCDIQSSAICMDKSLTYIVAENAGIATPEFWVFNKDDKP------MADTFT 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN- 238 P+FVKPA GSS GV KV ++ A++LA ++D K+++EQ + G E+ CAVLGN + Sbjct: 166 YPVFVKPARSGSSFGVKKVNGADELDAAIELAGQYDSKILIEQAVLGCEVGCAVLGNSSA 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L + + E G++ + VPA ++ E +I+ A + Y LGC Sbjct: 226 FVVGEVDQIRLQHGIFRIHQEAEPEKGSENAVITVPADLSAEERGRIQETAKKIYNALGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 G+ARVD+FL +V+NE+NTLPGFT+ S YP++ A G+ + +LI RLI LAL+ Sbjct: 286 RGLARVDMFLQDNGRIVLNEVNTLPGFTSYSRYPRMMAAVGIAFPELIDRLIVLALK 342 >sp|P25051|VANA_ENTFC VANCOMYCIN/TEICOPLANIN A-TYPE RESISTANCE PROTEIN VANA (VANA LIGASE) (D-ALANINE--D-LACTATE LIGASE) pir||CESOVM vancomycin resistance protein vanA - Enterococcus faecium plasmid pIP816 emb|CAA40215.1| (X56895) VANA ligase [Enterococcus faecium] gb|AAA65956.1| (M97297) vanA [Transposon Tn1546] Length = 343 Score = 424 bits (1090), Expect = e-118 Identities = 130/357 (36%), Positives = 203/357 (56%), Gaps = 20/357 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I I+K +++ + +GI K G W + + Sbjct: 1 MNRIKVAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGM 119 D+ S P K H L+ +N + + VDV F +HG GEDGS+QG+ Sbjct: 61 NDN---------CYSAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +PFVG D+ +SA CMDK +T + ++AG+ F + + +R V + Sbjct: 112 FELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRP------VAATFT 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GV KV S ++ A++ A ++D K+++EQ + G E+ CAVLGN Sbjct: 166 YPVFVKPARSGSSFGVKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAA 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L + + E G++ + VPA ++ E +I+ A + Y+ LGC Sbjct: 226 LVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETAKKIYKALGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 G+ARVD+FL +V+NE+NTLPGFT+ S YP++ A+G+ +LI RLI LAL+ Sbjct: 286 RGLARVDMFLQDNGRIVLNEVNTLPGFTSYSRYPRMMAAAGIALPELIDRLIVLALK 342 >ref|NP_464381.1| (NC_003210) D-alanine--D-alanine ligase [Listeria monocytogenes EGD-e] emb|CAC98933.1| (AL591977) D-alanine--D-alanine ligase [Listeria monocytogenes] Length = 370 Score = 423 bits (1089), Expect = e-117 Identities = 152/368 (41%), Positives = 226/368 (61%), Gaps = 7/368 (1%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K ++ +++GGKSAEHEVSLQ+A ++++A+D +F+ + I +G+W + L+ Sbjct: 2 KTKLILLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFV 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + + + K E + I + V+FP++HG GEDG++QG+ V Sbjct: 62 EQLRFSATDTIKLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEV 121 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITL---TRANRHNISFAEVESKLG 179 N+P+VG+ VLAS+A MDK V K++ DAG+ P + + N AE+E L Sbjct: 122 LNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVAEMEEVLT 181 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+FVKPAN GSSVG+SK T++++ A+ AF +D +V+VEQG+ REIE VLGND P Sbjct: 182 YPVFVKPANLGSSVGISKATNKKELVDAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTP 241 Query: 240 QASTCGEIVLTSD---FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 S GEI+ FY Y KY D + A +++P + PEI ++++ A+QA+ L + Sbjct: 242 VCSVPGEILPEGAVATFYDYKAKYQDNNTA-LIIPTEVDPEILEQMKEYAIQAFLGLDAS 300 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 G+ R D FLT +N++ +NE+NT+PGFT SMYP LWQ +GL Y LI RL++LA ERHAA Sbjct: 301 GLVRADFFLTEDNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLAKERHAA 360 Query: 357 DNALKTTM 364 NALK + Sbjct: 361 KNALKYKL 368 >emb|CAB64487.1| (AJ243059) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 423 bits (1088), Expect = e-117 Identities = 132/360 (36%), Positives = 210/360 (57%), Gaps = 30/360 (8%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A++ +RF V I + G + + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVNYNRFTVKTFFISQSGDFIKT---------- 51 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQ--------NGQPLPTVDVIFPIVHGTLGEDG 114 +Q PG+ + + +A V+FP++HG +GEDG Sbjct: 52 -----------QEFSQTPGQEDRLMTNATIDWDKQVVPSAIYEEGAVVFPVLHGPMGEDG 100 Query: 115 SLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 S+QG L V +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEV Sbjct: 101 SVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEV 160 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL 234 E KL P+F KP+N GSSVG+SK ++E+ A+ LAF++D +V+VEQG+ REIE +L Sbjct: 161 EEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVGLL 220 Query: 235 GNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 GN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ +G Sbjct: 221 GNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETAFRAIG 279 Query: 295 CAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 G++R D F T + E+ +NE+NT+PGFT SMYP LW G+ Y+DLI L++LA + Sbjct: 280 GLGLSRCDFFYTDKGEIFLNELNTMPGFTQWSMYPLLWDNMGISYSDLIEHLVDLAKQSF 339 >ref|NP_372607.1| (NC_002758) D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus Mu50] ref|NP_375191.1| (NC_002745) D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus N315] dbj|BAB43170.1| (AP003136) D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus N315] dbj|BAB58245.1| (AP003364) D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus Mu50] Length = 356 Score = 422 bits (1086), Expect = e-117 Identities = 151/367 (41%), Positives = 226/367 (61%), Gaps = 15/367 (4%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K + IVFGGKSAEHEVS+ +A+N+++AIDK ++ V ++ I G W + + Sbjct: 1 MTKENICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIK 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + D H+ A ++Q+ L ++ +GQP D +FP++HG GEDG++QG+ Sbjct: 61 STDELHLE-NGEALEISQL-------LKESSSGQPY---DAVFPLLHGPNGEDGTIQGLF 109 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNI---SFAEVESK 177 V ++P+VG+ VL++A+ MDK V K+L GL P+I+ R+ V K Sbjct: 110 EVLDVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDK 169 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 L P+FVKPAN GSSVG+SK +E + + AF+FD K+++EQG+ REIE AVLGND Sbjct: 170 LNYPVFVKPANLGSSVGISKCNNEAELKEGIKEAFQFDRKLVIEQGVNAREIEVAVLGND 229 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 P+A+ GE+V FY Y +KY D ++ +PA + ++ +R +A++A++ C+G Sbjct: 230 YPEATWPGEVVKDVAFYDYKSKYKD-GKVQLQIPADLDEDVQLTLRNMALEAFKATDCSG 288 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 + R D F+T +N++ INE N +PGFT SMYPKLW+ GL Y +LIT+LIELA ERH Sbjct: 289 LVRADFFVTEDNQIYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELAKERHQDK 348 Query: 358 NALKTTM 364 K + Sbjct: 349 QKNKYKI 355 >gb|AAF72363.1|AF192329_24 (AF192329) VanB [Enterococcus faecalis] Length = 342 Score = 422 bits (1085), Expect = e-117 Identities = 128/358 (35%), Positives = 203/358 (55%), Gaps = 21/358 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I I+ +FD +GI K G W + Sbjct: 1 MNRIKVAIIFGGCSEEHDVSVKSAIEIAANINTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGM 119 AD + P + H L+ + + +DV FP++HG GEDG++QG+ Sbjct: 61 AD----------SLPAILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGL 110 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 111 FELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPE------AGALT 164 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN-DN 238 P+FVKPA GSS GV+KV E+ A++ A ++D K+++EQ I G E+ CAV+GN D+ Sbjct: 165 YPVFVKPARSGSSFGVTKVNGTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDD 224 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L+ + + E G++ + VPA I E ++++ A + Y+ LGC Sbjct: 225 LIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGC 284 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+ARVD+FL + +V+NE+NTLPGFT+ S YP++ A+G+ LI LI LAL+R Sbjct: 285 RGLARVDLFLQEDGGIVLNEVNTLPGFTSYSRYPRMVAAAGITLPALIDSLITLALKR 342 >emb|CAB64471.1| (AJ243055) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 422 bits (1085), Expect = e-117 Identities = 132/360 (36%), Positives = 208/360 (57%), Gaps = 30/360 (8%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A++ RF V I + G + + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKT---------- 51 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDA--------QNGQPLPTVDVIFPIVHGTLGEDG 114 +Q PG+ + + +A V+FP++HG +GEDG Sbjct: 52 -----------QEFSQTPGQEDRLMTNATIDWDKKVAPSAIYEEEAVVFPVLHGPMGEDG 100 Query: 115 SLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 S+QG L V +P+VG ++L+S+ MDK TKR+L G+ P++ + + AEV Sbjct: 101 SVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLESTGIAQVPYVAIVEGDDVTAKIAEV 160 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL 234 E KL P+F KP+N GSSVG+SK ++E+ A+ LAF++D +V+VEQG+ REIE +L Sbjct: 161 EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVGLL 220 Query: 235 GNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 GN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ +G Sbjct: 221 GNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETAFRAIG 279 Query: 295 CAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 G++R D F T + E+ +NE+NT+PGFT SMYP LW G+ Y +LI RL++LA E Sbjct: 280 GLGLSRCDFFYTDKGEIFLNELNTMPGFTQWSMYPLLWDNMGISYPELIERLVDLAKESF 339 >sp|O54631|DDL_STRPN D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAC95435.1| (AF068901) D-Ala-D-Ala ligase [Streptococcus pneumoniae] Length = 347 Score = 422 bits (1085), Expect = e-117 Identities = 130/352 (36%), Positives = 203/352 (56%), Gaps = 14/352 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A++ RF V I + G + + ++ + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSHAPGQE 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D V+FP++HG +GEDGS+QG L V Sbjct: 62 DRLMTNETIDWDKKVA-------------PSAIYEEGAVVFPVLHGPMGEDGSVQGFLEV 108 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P+ Sbjct: 109 LKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPV 168 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +LGN + +++ Sbjct: 169 FTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKST 228 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 GE+V FY YD KYID + + +PA I+ ++ +R A A++ +G G++R D Sbjct: 229 LPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCD 287 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 F T + E+ +NE+NT+PGFT SMYP LW G+ Y +LI RL++LA E Sbjct: 288 FFYTDKGEIFLNELNTMPGFTQWSMYPLLWDNMGISYPELIERLVDLAKESF 339 >emb|CAB64475.1| (AJ243056) D-ala,D-ala ligase [Streptococcus pneumoniae] emb|CAB64479.1| (AJ243057) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 422 bits (1085), Expect = e-117 Identities = 131/352 (37%), Positives = 203/352 (57%), Gaps = 14/352 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A+D RF V I + G + + ++ + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQE 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D V+FP++HG +GEDGS+QG L V Sbjct: 62 DRLMTNETIDWDKKVA-------------PSAIYEEGAVVFPVLHGPMGEDGSVQGFLEV 108 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P+ Sbjct: 109 LKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPV 168 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +LGN + +++ Sbjct: 169 FTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKST 228 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 GE+V FY YD KYID + + +PA I+ ++ +R A A++ +G G++R D Sbjct: 229 LPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCD 287 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 F T + E+ +NE+NT+PGFT SMYP LW G+ Y +LI RL++LA E Sbjct: 288 FFYTDKGEIFLNELNTMPGFTQWSMYPLLWDNMGISYPELIERLVDLAKESF 339 >ref|NP_346110.1| (NC_003028) D-alanine--D-alanine ligase [Streptococcus pneumoniae TIGR4] gb|AAK75750.1| (AE007460) D-alanine--D-alanine ligase [Streptococcus pneumoniae TIGR4] Length = 347 Score = 422 bits (1085), Expect = e-117 Identities = 131/352 (37%), Positives = 202/352 (57%), Gaps = 14/352 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A+D RF V I + G + + ++ + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQE 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D V+FP++HG +GEDGS+QG L V Sbjct: 62 DRLMTNETIDWDKKVA-------------PSAIYEEGAVVFPVLHGPMGEDGSVQGFLEV 108 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P+ Sbjct: 109 LKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPV 168 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +LGN + +++ Sbjct: 169 FTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKST 228 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 GE+V FY YD KYID + + +PA I+ ++ +R A A++ +G G++R D Sbjct: 229 LPGEVVKDVAFYDYDAKYIDNN-ITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCD 287 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 F T + E+ +NE+NT+PGFT SMYP LW G+ Y LI RL++LA E Sbjct: 288 FFYTDKGEIFLNELNTMPGFTQWSMYPLLWDNMGISYPKLIERLVDLAKESF 339 >ref|NP_470190.1| (NC_003212) D-alanine--D-alanine ligase [Listeria innocua] emb|CAC96080.1| (AL596166) D-alanine--D-alanine ligase [Listeria innocua] Length = 370 Score = 422 bits (1085), Expect = e-117 Identities = 152/368 (41%), Positives = 223/368 (60%), Gaps = 7/368 (1%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K ++ +++GGKSAEHEVSLQ+A ++++A+D +F+ + I +G+W + L+ Sbjct: 2 KTKLILLYGGKSAEHEVSLQTAFSVINALDLEKFEAEPIYITNEGEWVQGPLLSGKLDFV 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + + K E + I + V+FP++HG GEDG++QG+ V Sbjct: 62 EQLRFSATDRVKLATAESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEV 121 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITL---TRANRHNISFAEVESKLG 179 N+P+VG+ VLAS+A MDK V K++ DAG+ P + + N E+E L Sbjct: 122 LNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVTEMEEVLT 181 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+FVKPAN GSSVG+SK T++ + A+ AF +D +V+VEQG+ REIE VLGND P Sbjct: 182 YPVFVKPANLGSSVGISKATNKTELIEAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTP 241 Query: 240 QASTCGEIVLTSD---FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 S GEI+ FY Y KY D + A +++P + PEI ++++ AVQA+ L + Sbjct: 242 VCSVPGEILPEGAVAKFYDYKAKYQDNNTA-LIIPTEVEPEILEQMKEYAVQAFLGLDAS 300 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 G+ R D FLT +N++ +NE+NT+PGFT SMYP LWQ +GL Y LI RL++LA ERHAA Sbjct: 301 GLVRADFFLTEDNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLAKERHAA 360 Query: 357 DNALKTTM 364 NALK + Sbjct: 361 KNALKYKL 368 >ref|NP_485023.1| (NC_003272) D-alanyl-D-alanine ligase [Nostoc sp. PCC 7120] dbj|BAB72937.1| (AP003584) D-alanyl-D-alanine ligase [Nostoc sp. PCC 7120] Length = 364 Score = 421 bits (1083), Expect = e-117 Identities = 158/363 (43%), Positives = 223/363 (60%), Gaps = 13/363 (3%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAI----DKSRFDVVLLGIDKQGQWHVSDASNYLL 59 +RVG++FGG+S EHEVS+ SA+ I A+ + S+++++ I K G+W +A +L Sbjct: 1 MRVGLLFGGRSGEHEVSISSARAIASALSAGENASKYEILPFYIHKDGRWLAGEAPQQVL 60 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 + P + S + + L Q+ + VDV FPI+HG GEDG++QG+ Sbjct: 61 KSGAPLLESSNSSPAE-NNLVNSQQQTLERWQSPSQVAEVDVWFPILHGPNGEDGTIQGL 119 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHN------ISFAE 173 L + PFVGS VL SA MDK K AGL + +TRA + E Sbjct: 120 LTLMQTPFVGSGVLGSALGMDKIAMKMAFEQAGLPQVKYKAVTRAQIWSNPCVFPKLCDE 179 Query: 174 VESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAV 233 +E+ LG P FVKPAN GSSVG+SKV S ++ A+D A +D ++I+E G+ RE+ECAV Sbjct: 180 IEASLGYPCFVKPANLGSSVGISKVRSRQELEDALDNAANYDRRIIIEAGVAAREVECAV 239 Query: 234 LGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 LGND PQAST GEI SDFY Y+TKY A +++PA I +I+ +I+ +A+QA+ + Sbjct: 240 LGNDQPQASTVGEITFNSDFYDYETKYT-AGKADLLIPAIIPDDISRQIQNMALQAFAAV 298 Query: 294 GCAGMARVDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 AG+ARVD F EV+INEINTLPGFT SMYP+LW SG+ + +L+ +L++LA+E Sbjct: 299 DAAGLARVDFFYVEATGEVLINEINTLPGFTATSMYPQLWAHSGIPFPELVDKLVQLAIE 358 Query: 353 RHA 355 RH Sbjct: 359 RHN 361 >ref|NP_388337.1| (NC_000964) D-alanyl-D-alanine ligase A [Bacillus subtilis] sp|P96612|DDL_BACSU D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||D69613 D-alanine--D-alanine ligase (EC 6.3.2.4) A ddlA - Bacillus subtilis dbj|BAA19293.1| (AB001488) PROBABLE D-ALANINE--D-ALANINE LIGASE A [Bacillus subtilis] emb|CAB12263.1| (Z99106) D-alanyl-D-alanine ligase A [Bacillus subtilis] Length = 354 Score = 421 bits (1083), Expect = e-117 Identities = 153/358 (42%), Positives = 220/358 (60%), Gaps = 8/358 (2%) Query: 9 VFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIA 68 ++GGKSAEH VSLQ+A ++ A++ +FD+ + I ++G+W ++ Sbjct: 1 MYGGKSAEHNVSLQTALAVIKALNTEKFDIHPIYITEKGEWVRGARLTEPVSNVKMLQFE 60 Query: 69 LRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFV 128 SA S P ++ + Q +DV+FP++HG GEDG++QGML + N+P+V Sbjct: 61 QGGSAFS----PAALNQEMFPQEASQQNEAIDVVFPLLHGPNGEDGTIQGMLELLNIPYV 116 Query: 129 GSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRH---NISFAEVESKLGLPLFVK 185 G+ VLAS+A MDK V K L GL A + + + S EVE +LG P FVK Sbjct: 117 GNGVLASSAGMDKVVMKHLFAQVGLAQAKYAAFLKKDWTRSPKESCEEVEQELGYPCFVK 176 Query: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTCG 245 PAN GSSVG+SK + E+ A +LAF++D KV+VE+GI GREIE VLGND+P+ S G Sbjct: 177 PANLGSSVGISKCRNREELQKAFELAFQYDRKVVVEEGINGREIEIGVLGNDDPKCSVVG 236 Query: 246 EIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFL 305 EI +DFY Y KY D D +++PA + E I +A++A++ + +G+ R D FL Sbjct: 237 EIAPKTDFYDYKAKYEDGD-TDLMIPAIVTDEEYATISDMAIKAFKAIDGSGLVRADFFL 295 Query: 306 TPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALKTT 363 T + EV+INE+NT+PGFT SM+P LW+ +G+ Y DLI +L+ELA ERHA +K T Sbjct: 296 TADGEVLINEVNTMPGFTPFSMFPLLWKEAGVEYADLIEQLVELAKERHAEKQLIKHT 353 >ref|NP_359108.1| (NC_003098) D-alanine-D-alanine ligase [Streptococcus pneumoniae R6] gb|AAL00319.1| (AE008520) D-alanine-D-alanine ligase [Streptococcus pneumoniae R6] Length = 347 Score = 421 bits (1083), Expect = e-117 Identities = 131/352 (37%), Positives = 204/352 (57%), Gaps = 14/352 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A+D RF V I + G + + ++ + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQE 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D V+FP++HG +GEDGS+QG L V Sbjct: 62 DRLMTNETIDWDKKVA-------------PSAIYEEGAVVFPVLHGPMGEDGSVQGFLEV 108 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P+ Sbjct: 109 LKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPV 168 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +LGN + +++ Sbjct: 169 FTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKST 228 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 GE+V FY YD KYID + + +PA I+ ++ +R A A++ +G G++R D Sbjct: 229 LPGEVVKDVAFYDYDAKYID-NKVTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCD 287 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 F T + E+ +NE+NT+PGFT SMYP LW+ G+ Y +LI RL++LA E Sbjct: 288 FFYTDKGEIFLNELNTMPGFTQWSMYPLLWENMGISYPELIERLVDLAKESF 339 >pdb|1E4E|A Chain A, D-Alanyl-D-Lacate Ligase Length = 343 Score = 421 bits (1082), Expect = e-117 Identities = 129/357 (36%), Positives = 203/357 (56%), Gaps = 20/357 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I I+K +++ + +GI K G W + + Sbjct: 1 MNRIKVAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGM 119 ++ S P K H L+ +N + + VDV F +HG GEDGS+QG+ Sbjct: 61 NEN---------CYSAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +PFVG D+ +SA CMDK +T + ++AG+ F + + +R V + Sbjct: 112 FELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRP------VAATFT 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GV KV S ++ A++ A ++D K+++EQ + G E+ CAVLGN Sbjct: 166 YPVFVKPARSGSSFGVKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAA 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L + + E G++ + VPA ++ E +I+ + Y+TLGC Sbjct: 226 LVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETVKKIYKTLGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 G+ARVD+FL +V+NE+NTLPGFT+ S YP++ A+G+ +LI RLI LAL+ Sbjct: 286 RGLARVDMFLQDNGRIVLNEVNTLPGFTSYSRYPRMMAAAGISLPELIDRLIVLALK 342 >emb|CAB05883.1| (Z83305) D-alanine:D-alanine ligase-related protein [Enterococcus faecium] gb|AAB39760.1| (U81452) D-alanine:D-alanine ligase-related protein [Enterococcus faecium] gb|AAG34691.1|AF310956_6 (AF310956) D-alanine:D-lactate ligase [Enterococcus faecium] Length = 342 Score = 420 bits (1080), Expect = e-116 Identities = 128/358 (35%), Positives = 203/358 (55%), Gaps = 21/358 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I ID +FD +GI K G W + Sbjct: 1 MNRIKVAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGM 119 AD + P + H L+ + + +DV FP++HG GEDG++QG+ Sbjct: 61 AD----------SLPAILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGL 110 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 111 FVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPE------AGALT 164 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN-DN 238 P+FVKPA GSS G++KV E+ A++ A ++D K+++EQ I G E+ CAV+GN D+ Sbjct: 165 YPVFVKPARSGSSFGLTKVNGTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDD 224 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L+ + + E G++ + VPA I E ++++ A + Y+ LGC Sbjct: 225 LIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGC 284 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+ARVD+FL + +V+NE+NTLPGFT+ S YP++ A+G+ LI LI LAL+R Sbjct: 285 RGLARVDLFLQEDGGIVLNEVNTLPGFTSYSRYPRMMAAAGITLPALIDSLITLALKR 342 >pdb|1E4E|B Chain B, D-Alanyl-D-Lacate Ligase Length = 343 Score = 419 bits (1079), Expect = e-116 Identities = 129/357 (36%), Positives = 203/357 (56%), Gaps = 20/357 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I I+K +++ + +GI K G W + + Sbjct: 1 MNRIKVAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGM 119 ++ S P K H L+ +N + + VDV F +HG GEDGS+QG+ Sbjct: 61 NEN---------CYSAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +PFVG D+ +SA CMDK +T + ++AG+ F + + +R V + Sbjct: 112 FELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRP------VAATFT 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GV KV S ++ A++ A ++D K+++EQ + G E+ CAVLGN Sbjct: 166 YPVFVKPARSGSSFGVKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAA 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L + + E G++ + VPA ++ E +I+ + Y+TLGC Sbjct: 226 LVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETVKKIYKTLGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 G+ARVD+FL +V+NE+NTLPGFT+ S YP++ A+G+ +LI RLI LAL+ Sbjct: 286 RGLARVDMFLQDRGRIVLNEVNTLPGFTSYSRYPRMMAAAGISLPELIDRLIVLALK 342 >emb|CAB64459.1| (AJ243052) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 419 bits (1077), Expect = e-116 Identities = 130/352 (36%), Positives = 202/352 (56%), Gaps = 14/352 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A++ RF V I + G + ++ + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDSIKTQEFSHAPGQE 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D V+FP++HG +GEDGS+QG L V Sbjct: 62 DRLMTNETIDWDKKVA-------------PSAIYEEGAVVFPVLHGPMGEDGSVQGFLEV 108 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P+ Sbjct: 109 LKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPV 168 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +LGN + +++ Sbjct: 169 FTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKST 228 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 GE+V FY YD KYID + + +PA I+ ++ +R A A++ +G G++R D Sbjct: 229 LPGEVVKDVAFYDYDAKYID-NKVTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCD 287 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 F T + E+ +NE+NT+PGFT SMYP LW G+ Y +LI RL++LA E Sbjct: 288 FFYTDKGEIFLNELNTMPGFTQWSMYPLLWDNMGISYPELIERLVDLAKESF 339 >emb|CAB64463.1| (AJ243053) D-ala,D-ala ligase [Streptococcus pneumoniae] emb|CAB64467.1| (AJ243054) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 419 bits (1077), Expect = e-116 Identities = 130/352 (36%), Positives = 203/352 (56%), Gaps = 14/352 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A++ RF V I + G + ++ + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDSIKTQEFSHAPGQE 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D V+FP++HG +GEDGS+QG L V Sbjct: 62 DRLMTNETIDWDKKVA-------------PSAIYEEGAVVFPVLHGPMGEDGSVQGFLEV 108 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P+ Sbjct: 109 LKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPV 168 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +LGN + +++ Sbjct: 169 FTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKST 228 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 GE+V FY YD KYID + + +PA I+ ++ +R A A++ +G G++R D Sbjct: 229 LPGEVVKDVAFYDYDAKYID-NKVTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCD 287 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 F T + E+ +NE+NT+PGFT SMYP LW+ G+ Y +LI RL++LA E Sbjct: 288 FFYTDKGEIFLNELNTMPGFTQWSMYPLLWENMGISYPELIERLVDLAKESF 339 >gb|AAG34685.1|AF310955_1 (AF310955) ligase VanB2 [Enterococcus faecalis] gb|AAG34693.1|AF310957_1 (AF310957) ligase VanB2 [Enterococcus faecium] Length = 342 Score = 418 bits (1076), Expect = e-116 Identities = 127/358 (35%), Positives = 202/358 (55%), Gaps = 21/358 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V +FGG S EH+VS++SA I ID +FD +GI K G W + Sbjct: 1 MNRIKVATIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGM 119 AD + P + H L+ + + +DV FP++HG GEDG++QG+ Sbjct: 61 AD----------SLPAILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGL 110 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 111 FVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPE------AGALT 164 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN-DN 238 P+FVKPA GSS GV+KV E+ A++ A ++D K+++EQ I G E+ CAV+GN D+ Sbjct: 165 YPVFVKPARSGSSFGVTKVNGPEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDD 224 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L+ + + E G++ + VPA I E ++++ A + Y+ LGC Sbjct: 225 LIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGC 284 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+ARVD+FL + +V+NE+NT+PGFT+ S YP++ A+G+ LI LI LAL+R Sbjct: 285 RGLARVDLFLQEDGGIVLNEVNTMPGFTSYSRYPRMVAAAGITLPALIDSLITLALKR 342 >gb|AAG34684.1|AF310954_1 (AF310954) ligase VanB2 [Enterococcus faecium] Length = 342 Score = 418 bits (1075), Expect = e-116 Identities = 127/358 (35%), Positives = 202/358 (55%), Gaps = 21/358 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V +FGG S EH+VS++SA I ID +FD +GI K G W + Sbjct: 1 MNRIKVATIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGM 119 AD + P + H L+ + + +DV FP++HG GEDG++QG+ Sbjct: 61 AD----------SLPAILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGL 110 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 111 FVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPE------AGALT 164 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN-DN 238 P+FVKPA GSS G++KV E+ A++ A ++D K+++EQ I G E+ CAV+GN D+ Sbjct: 165 YPVFVKPARAGSSFGLTKVNGTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDD 224 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L+ + + E G++ + VPA I E ++++ A + Y+ LGC Sbjct: 225 LIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGC 284 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+ARVD+FL + +V+NE+NTLPGFT+ S YP++ A+G+ LI LI LAL+R Sbjct: 285 RGLARVDLFLQEDGGIVLNEVNTLPGFTSYSRYPRMMAAAGITLPALIDSLITLALKR 342 >gb|AAG37026.1|AF277571_3 (AF277571) D-alanine:D-lactate ligase [Enterococcus faecium] Length = 343 Score = 418 bits (1074), Expect = e-116 Identities = 127/358 (35%), Positives = 206/358 (57%), Gaps = 20/358 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M KL++ ++FGG S EH+VS++SA + I+K ++ +GI K G W + D Sbjct: 1 MYKLKIAVLFGGCSEEHDVSVKSAMEVAANINKEKYQPFYIGITKSGAWKLCDKPC---- 56 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLID-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 D + A P+ S P + H L+ G VDV+ P++HG GEDG++QG+ Sbjct: 57 -RDWENYAGYPAVIS----PDRRIHGLLIQKDGGYESQPVDVVLPMIHGKFGEDGTIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L ++ +P+VG D+ +S CMDK + ++++AG+ + F L + + L Sbjct: 112 LELSGIPYVGCDIQSSVICMDKSLAYMVVKNAGIEVPGFRVLQKGDSLE------AETLS 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN- 238 P+FVKPA GSS GV+KV E+ AV A ++D K++VE+ + G E+ CA+LGN N Sbjct: 166 YPVFVKPARSGSSFGVNKVCRAEELQAAVTEAGKYDSKILVEEAVSGSEVGCAILGNGND 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L F+ + E G++ + VPAA+ E+ ++I+ A + Y+ LGC Sbjct: 226 LITGEVDQIELKHGFFKIHQEAQPEKGSENAVIRVPAALPDEVREQIQETAKKIYRVLGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+AR+D+FL + +V+NE+NT+PGFT+ S YP++ A+G ++++ RLI L+L R Sbjct: 286 RGLARIDLFLREDGSIVLNEVNTMPGFTSYSRYPRMMTAAGFTLSEILDRLIGLSLRR 343 >gb|AAG34683.1|AF310953_1 (AF310953) ligase VanB2 [Enterococcus faecium] Length = 342 Score = 417 bits (1073), Expect = e-116 Identities = 126/358 (35%), Positives = 202/358 (56%), Gaps = 21/358 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V +FGG S EH+VS++SA I ID +FD +GI K G W + Sbjct: 1 MNRIKVATIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGM 119 AD + P + H L+ + + +DV FP++HG GEDG++QG+ Sbjct: 61 AD----------SLPAILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGL 110 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 111 FVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPE------AGALT 164 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN-DN 238 P+FVKPA GSS G++KV E+ A++ A ++D K+++EQ I G E+ CAV+GN D+ Sbjct: 165 YPVFVKPARSGSSFGLTKVNGTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDD 224 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L+ + + E G++ + VPA I E ++++ A + Y+ LGC Sbjct: 225 LIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGC 284 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+ARVD+FL + +V+NE+NTLPGFT+ S YP++ A+G+ +I LI LAL+R Sbjct: 285 RGLARVDLFLQEDGGIVLNEVNTLPGFTSYSRYPRMMAAAGITLPAMIDSLITLALKR 342 >emb|CAB63849.1| (AJ243051) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 417 bits (1072), Expect = e-116 Identities = 129/352 (36%), Positives = 203/352 (57%), Gaps = 14/352 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A+D RF V I + G + + ++ + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQE 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D V+FP++HG +GEDGS+QG L V Sbjct: 62 DRLMTNETIDWDKKVA-------------PSAIYEEGAVVFPVLHGPMGEDGSVQGFLEV 108 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P+ Sbjct: 109 LKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPV 168 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 F KP+N G SVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +LGN + +++ Sbjct: 169 FTKPSNMGCSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKST 228 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 GE+V FY YD KYID + + +PA I+ ++ +R A A++ +G G++R + Sbjct: 229 LPGEVVKDVAFYDYDAKYID-NKVTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCN 287 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 F T + E+ +NE+NT+PGFT SMYP LW+ G+ Y +LI RL++LA E Sbjct: 288 FFYTDKGEIFLNELNTMPGFTQWSMYPLLWENMGISYPELIERLVDLAKESF 339 >gb|AAF36803.1|AF155139_2 (AF155139) putative D-alanyl-D-alanine ligase VanE [Paenibacillus popilliae] Length = 343 Score = 416 bits (1070), Expect = e-115 Identities = 126/357 (35%), Positives = 207/357 (57%), Gaps = 20/357 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +L++ I+FGG S EH+VS++SAK I + ID +++ + +GI + G W + + + Sbjct: 1 MNRLKIAILFGGCSEEHDVSVKSAKEIANNIDTEKYEPIYIGITRSGVWKMCEKPCMDWD 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQN-GQPLPTVDVIFPIVHGTLGEDGSLQGM 119 ++ L P K H L+ +N G + +D +F ++HG GEDG++QG+ Sbjct: 61 NENCRSAVLS---------PDKKMHGLLVMRNKGYQIQRIDAVFSVLHGKSGEDGAIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++++P+VG DV +SA CMDK +T + ++AG F+ L + + + L Sbjct: 112 FELSSIPYVGCDVQSSAVCMDKSLTYIVAQNAGFGTPEFLILNHGDIPD------SNTLT 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GV+KV +E++ A++ A ++D KV++EQ + G E+ CAVLGN + Sbjct: 166 YPVFVKPARSGSSFGVNKVNNEDELDAAIETARQYDSKVLIEQAVPGLEVGCAVLGNGTD 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L+ + + E G++ V+VPA ++ E KI+ A Y+ LGC Sbjct: 226 LIVGEVDQISLSHGIFRIHQEDQPEKGSENAVVLVPANLSAEKRIKIQETAKAIYKALGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 G++RVD+FL +++NE+NTLPGFT S YP++ A+G+ + LI I LAL+ Sbjct: 286 KGLSRVDMFLQENGRIILNEVNTLPGFTAYSRYPRMMAAAGMTLSGLIDHCITLALK 342 >ref|NP_103309.1| (NC_002678) D-alanine-D-alanine ligase A [Mesorhizobium loti] dbj|BAB49095.1| (AP002998) D-alanine-D-alanine ligase A [Mesorhizobium loti] Length = 357 Score = 414 bits (1066), Expect = e-115 Identities = 160/359 (44%), Positives = 228/359 (62%), Gaps = 9/359 (2%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 EK RV I++GG+SAEH+VS SA N++ AID++R++VV + I + G+W + +S Sbjct: 3 EKTRVAILYGGRSAEHDVSRLSAANVLKAIDRTRYEVVPIAISRDGRWRLQPSSE---AG 59 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 D A + +A +PG + +NG+ VDV+FP++HG GEDGS+QG Sbjct: 60 ADGAGAQVPEDGVEVALLPGGKGRLVALTKNGEQPDPVDVVFPVLHGPFGEDGSVQGYAE 119 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 VA++ +VG +LASAA MDKDV KRLLR+AGL +A +T+ + + SF E+ LGLP Sbjct: 120 VADVAYVGCGILASAAAMDKDVAKRLLREAGLAVARSVTVLKGD--VGSFQEIAGALGLP 177 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG--NDNP 239 F KPA QGSS GVSKV + + AV+ A +D K ++E+ + GREIEC+VL + + Sbjct: 178 FFAKPARQGSSFGVSKVHDRDGFEQAVETALRYDSKALIEEFVDGREIECSVLERADGSL 237 Query: 240 QASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 S GEI+ FY Y+ KY D +GA V VPA + ++ + +A +A++ LGC Sbjct: 238 TVSPPGEIIPADKHGFYTYEAKYFDAEGAVVKVPADVPADVVARTSEMAARAFRALGCEA 297 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 MARVD FL + +++NE+NTLPGFT+ISMY K A+G+GY+ +I LIE AL RH A Sbjct: 298 MARVDFFLRADGSLLVNEVNTLPGFTDISMYAKALAAAGIGYSKVIDVLIEHALARHRA 356 >emb|CAB64483.1| (AJ243058) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 413 bits (1063), Expect = e-114 Identities = 131/360 (36%), Positives = 208/360 (57%), Gaps = 30/360 (8%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A++ RF V I + G + + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKT---------- 51 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDA--------QNGQPLPTVDVIFPIVHGTLGEDG 114 +Q PG+ + + +A V+FP++HG +GEDG Sbjct: 52 -----------QEFSQTPGQEDRLMTNATIDWDKQVAPSAIYEEGAVVFPVLHGPMGEDG 100 Query: 115 SLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 S+QG L V +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEV Sbjct: 101 SVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDLTAKIAEV 160 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL 234 E KL P+F KP+N GSSVG+SK ++E+ A+ LAF++D +V+VEQG+ REIE +L Sbjct: 161 EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVGLL 220 Query: 235 GNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 GN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ +G Sbjct: 221 GNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVPIMRQNAKTAFRAIG 279 Query: 295 CAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 G++R + F T + E+ +N++NT+PGFT SMYP LW + Y DLI RL++LA E Sbjct: 280 GLGLSRCNFFYTDKGEISLNKLNTMPGFTQWSMYPLLWDNMRISYPDLIERLVDLAKESF 339 >gb|AAD42184.1|AF130997_5 (AF130997) D-alanine:D-lactate ligase [Enterococcus faecium] Length = 343 Score = 410 bits (1055), Expect = e-114 Identities = 127/360 (35%), Positives = 209/360 (57%), Gaps = 24/360 (6%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V ++FGG S EH VS++SA I ID ++ +GI K G W + + Sbjct: 1 MFRIKVAVLFGGCSEEHNVSIKSAMEIAANIDTKKYQPYYIGITKSGVWKMCEKPCLEWE 60 Query: 61 --ADDPAHIALRPSATSLAQVPGKHEHQLIDAQN-GQPLPTVDVIFPIVHGTLGEDGSLQ 117 A DP + P + H L+ ++ G + VDV+FP++HG GEDGS+Q Sbjct: 61 QYAGDPVVFS-----------PDRSTHGLLIQKDKGYEIQPVDVVFPMIHGKFGEDGSIQ 109 Query: 118 GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK 177 G+L ++ +P+VG D+ +S CMDK + ++++AG+ + F L +R Sbjct: 110 GLLELSGIPYVGCDIQSSVICMDKALAYTVVKNAGITVPGFRILQEGDRLET------ED 163 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 P+FVKPA GSS GV+KV E+ A++ A ++D K+++E+ + G E+ CA+LGN Sbjct: 164 FVYPVFVKPARSGSSFGVNKVCKAEELQAAIEEARKYDSKILIEEAVTGSEVGCAILGNG 223 Query: 238 N-PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTL 293 N A +I L F+ + E G++ + VPAA+ E+ ++I+ A++ Y+ L Sbjct: 224 NDLMAGEVDQIELRHGFFKIHQEAQPEKGSENAVIRVPAALPDEVREQIQETAMKIYRIL 283 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 GC G+AR+D+FL + +V+NE+NT+PGFT+ S YP++ A+G ++++ RLIEL+L R Sbjct: 284 GCRGLARIDLFLREDGCIVLNEVNTMPGFTSYSRYPRMMTAAGFTLSEILDRLIELSLRR 343 >pir||T35363 D-alanine--D-alanine ligase (EC 6.3.2.4) A SC66T3.06 [similarity] - Streptomyces coelicolor emb|CAB45462.1| (AL079348) putative D-alanine:D-lactate ligase [Streptomyces coelicolor A3(2)] Length = 346 Score = 410 bits (1055), Expect = e-114 Identities = 137/356 (38%), Positives = 201/356 (55%), Gaps = 20/356 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +L+VGIVFGG S EH VS++SA+ + +D ++ +GI K G W + D Sbjct: 1 MARLKVGIVFGGSSEEHAVSVKSAQEVARNLDTEKYQPFFVGITKDGAWRLCDGPGQDWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLP-TVDVIFPIVHGTLGEDGSLQGM 119 D + L P + H L+ + GQ +DV+ P++HGTLGEDG+ QG+ Sbjct: 61 NGDCRPVVLS---------PDRSVHGLLVLEQGQYRSVRLDVVLPVLHGTLGEDGATQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L ++ +P+VG DV +SA CMDK + + R AG+ F T+T + +L Sbjct: 112 LELSGIPYVGCDVQSSALCMDKSLAYVVARSAGIATPDFWTVTGDETIDP------GRLT 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GVSKV E A AV+ A +D KV++E + G E+ CA+LGND + Sbjct: 166 YPVFVKPARSGSSFGVSKVCRPEDLATAVESARRYDTKVLIEAAVVGSEVGCAILGNDPD 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 I L+ F+ + E+G++ VVPA I E ++ A Y+ LGC Sbjct: 226 LIVGEVDRIALSHGFFRIHQEEQPENGSENSTPVVPADIPTEKRSLVQETAKAVYRALGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 G++RVD+FL + EVV+NE+NTLPG T+ S YP++ A+GL +++I R + LAL Sbjct: 286 RGLSRVDMFLKEDGEVVLNEVNTLPGMTSYSRYPRMMAAAGLPLSEVIDRTLSLAL 341 >ref|NP_266497.1| (NC_002662) D-alanine-D-alanine ligase (EC 6.3.2.4) [Lactococcus lactis subsp. lactis] sp|Q9CIL5|DDL_LACLA D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAK04439.1|AE006271_2 (AE006271) D-alanine-D-alanine ligase (EC 6.3.2.4) [Lactococcus lactis subsp. lactis] Length = 349 Score = 410 bits (1055), Expect = e-114 Identities = 129/353 (36%), Positives = 207/353 (58%), Gaps = 15/353 (4%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K + +++GG+SAE EVS+ SA++++ A++ SRF V I K G++ + Sbjct: 1 MSKETLILLYGGRSAEREVSVLSAESVMRAVNYSRFVVKTYFITKGGEFIKTQEFTDKPA 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 ++ + LA+ K V+FP++HG +GEDGS+QG L Sbjct: 61 EEE------KLLTNDLAESYPK-------ISPAAIYEKAAVVFPVLHGPMGEDGSIQGFL 107 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + L +VG ++L++++ MDK + K + G+ P++ EV KL Sbjct: 108 EILRLAYVGPNILSASSTMDKLLAKHVFEAVGVPQVPYVAAFADENQGEIAQEVVEKLEF 167 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG-NDNP 239 P+FVKPAN GSSVG+SKV A+ A+++D++V++EQG+ REIECAVLG N + Sbjct: 168 PVFVKPANMGSSVGISKVDDLADLQPALSEAYKYDNRVVIEQGVDAREIECAVLGNNSDV 227 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 A+ GE+V +FY Y++KYID + ++ +PA + ++ K++ A++AY+ + G++ Sbjct: 228 SATLPGEVVKDVEFYDYNSKYID-NKIQMDIPAKVPADLAQKMQEYAIKAYKAVNGTGLS 286 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 R D F+T + V +NEIN +PGFT SMYP LW+ GL Y+DLI +L++LA E Sbjct: 287 RCDFFVTKDGNVYLNEINAIPGFTQWSMYPLLWENMGLSYSDLIEKLVDLAKE 339 >gb|AAD41882.1|AF153050_3 (AF153050) D-alanine:D-lactate ligase [Enterococcus faecium] Length = 343 Score = 409 bits (1051), Expect = e-113 Identities = 129/360 (35%), Positives = 210/360 (57%), Gaps = 24/360 (6%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN--YL 58 M K++V ++FGG S EH VS++SA I ID ++ +GI K G W + + + Sbjct: 1 MFKIKVAVLFGGCSEEHNVSIKSAMEIAANIDTKKYQPYYIGITKSGVWKMCEKPCLGWE 60 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQN-GQPLPTVDVIFPIVHGTLGEDGSLQ 117 A DP + P + H L+ ++ G + VDV+FP++HG GEDGS+Q Sbjct: 61 QYAGDPVVFS-----------PDRSTHGLLIQKDTGYEIQPVDVVFPMIHGKFGEDGSIQ 109 Query: 118 GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK 177 G+L ++ +P+VG D+ +S CMDK + ++++AG+ + F L +R Sbjct: 110 GLLELSGIPYVGCDIQSSVICMDKALAYTVVKNAGIAVPGFRILQEGDRLET------ED 163 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 L P+FVKPA GSS GV+KV E+ A+ A ++D K+++E+ + G E+ CA+LGN+ Sbjct: 164 LVYPVFVKPARSGSSFGVNKVCKAEELQAAIREARKYDSKILIEEAVTGSEVGCAILGNE 223 Query: 238 N-PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTL 293 N A +I L F+ + E G++ + VPAA+ E+ ++IR A++ Y+ L Sbjct: 224 NDLMAGEVDQIELRHGFFKIHQEAQPEKGSENAVIRVPAALPDEVRERIRKTAMKIYRIL 283 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 GC G+AR+D+FL + +V+NE+NT+PGFT+ S YP++ A+G ++++ RLIE +L R Sbjct: 284 GCRGLARIDLFLREDGCIVLNEVNTMPGFTSYSRYPRMMTAAGFTLSEILDRLIEFSLRR 343 >ref|NP_269512.1| (NC_002737) putative D-ala,D-ala ligase [Streptococcus pyogenes] [Streptococcus pyogenes M1 GAS] gb|AAK34233.1| (AE006579) putative D-ala,D-ala ligase [Streptococcus pyogenes M1 GAS] Length = 348 Score = 405 bits (1041), Expect = e-112 Identities = 126/352 (35%), Positives = 202/352 (56%), Gaps = 14/352 (3%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K + +++GG+SAE EVS+ SA++++ A++ +F V I + GQ+ + + + Sbjct: 1 MSKQTLVLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQMGQFIKTQQFSEKPS 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + R ++ K + V+FP++HG +GEDGS+QG L Sbjct: 61 E------SERLMTNETIELTQK-------IKPSDIYEEGAVVFPVLHGPMGEDGSIQGFL 107 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 V +P++G++V++S+ MDK TKR+L G+ + E ++L Sbjct: 108 EVLRMPYIGTNVMSSSIAMDKITTKRVLESIGIPQVAYTVYIDGQDLEACLVETLARLTF 167 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+FVKPAN GSSVG+SK ++ + A+ LA +D +V++EQG+ REIE +LGND + Sbjct: 168 PIFVKPANMGSSVGISKAQTKVELRKAIQLALTYDSRVLIEQGVVAREIEVGLLGNDKVK 227 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 ++ GE++ DFY Y KY+D + + +PA + I ++R+ A A++ LG G++R Sbjct: 228 STLPGEVIKDVDFYDYQAKYVD-NKITMAIPADVDQSIVTEMRSYAEVAFKALGGCGLSR 286 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 D FLT + +V +NE+NT+PGFT SMYP LW+ GL Y DLI L+ LA E Sbjct: 287 CDFFLTQDGQVYLNELNTMPGFTQWSMYPLLWENMGLAYPDLIEELVTLAQE 338 >ref|NP_440997.1| (NC_000911) D-alanine:D-alanine ligase-related protein [Synechocystis sp. PCC 6803] sp|P73632|DDL_SYNY3 D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||S77119 D-alanine--D-alanine ligase (EC 6.3.2.4) A - Synechocystis sp. (strain PCC 6803) dbj|BAA17677.1| (D90908) D-alanine:D-alanine ligase-related protein [Synechocystis sp. PCC 6803] Length = 354 Score = 401 bits (1031), Expect = e-111 Identities = 145/363 (39%), Positives = 218/363 (59%), Gaps = 27/363 (7%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAI----DKSRFDVVLLGIDKQGQWHVSDASNYLL 59 +RVG++FGG S EHEVS++SA+ I A+ +++++ V I K G W D S +L Sbjct: 1 MRVGLLFGGCSGEHEVSIKSAQAIAKALASDDNQTKYQVSPFYIQKNGVWLGPDVSQQVL 60 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 + P +A Q P + ++V FPI+HG GEDG++QG+ Sbjct: 61 DQGVP-WGDQPVTAGQRWQFPPEAAR-------------MEVWFPILHGPNGEDGTVQGL 106 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHN------ISFAE 173 + +P+VGS VL S MDK K + AGL ++ + R + + Sbjct: 107 FSLMQVPYVGSGVLGSCVGMDKLAMKMVFERAGLPQVNYMGVERGEIWSNPCVFPALCEK 166 Query: 174 VESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECA 232 +E+++G P FVKPAN GSSVG++KV + + A+D A +D ++IVE G+ RE+ECA Sbjct: 167 IEAQVGYPCFVKPANLGSSVGIAKVRNRSELEAALDNAASYDRRIIVEAGLTDIREVECA 226 Query: 233 VLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 VLGN+NPQAS GEI SDFY Y+TKY D +++ +PA + + ++I+ +A+QA++ Sbjct: 227 VLGNENPQASVVGEITYDSDFYDYETKYTD-GRSQMHIPANLPKAVVNQIQTMAIQAFKA 285 Query: 293 LGCAGMARVDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 + AG+ R+D F P ++VINEINTLPGFT SMYP+LW+ASG+ + L+ RL++LAL Sbjct: 286 VDAAGLGRLDFFYQPTTGQIVINEINTLPGFTAFSMYPELWRASGVEFPSLVDRLLQLAL 345 Query: 352 ERH 354 + H Sbjct: 346 DYH 348 >gb|AAD51060.1|AF175293_5 (AF175293) D-alanine:D-lactate ligase [Enterococcus faecium] Length = 343 Score = 400 bits (1028), Expect = e-110 Identities = 127/360 (35%), Positives = 207/360 (57%), Gaps = 24/360 (6%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V ++FGG S EH VS++SA I ID ++ +GI K G W + + Sbjct: 1 MFRIKVAVLFGGCSEEHNVSIKSAMEIAANIDTKKYQPYYIGITKSGVWKMCEKPCLEWE 60 Query: 61 --ADDPAHIALRPSATSLAQVPGKHEHQLIDAQN-GQPLPTVDVIFPIVHGTLGEDGSLQ 117 A DP + P + H L+ ++ G + VDV P++HG GEDGS+Q Sbjct: 61 QYAGDPVVFS-----------PDRSTHGLLIQKDTGYEIQPVDVGLPMIHGKFGEDGSIQ 109 Query: 118 GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK 177 G+L ++ +P+VG D+ +S CMDK + ++++AG+ + F L +R Sbjct: 110 GLLELSGIPYVGCDIQSSVTCMDKALAYTVVKNAGIAVPGFRILQEGDRLET------ED 163 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 P+FVKPA GSS GV+KV E+ A++ A ++D K+++E+ + G E+ CA+LGN Sbjct: 164 FVYPVFVKPARSGSSFGVNKVCKAEELQAAIEDARKYDSKILIEEAVTGSEVGCAILGNG 223 Query: 238 N-PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTL 293 N A +I L F+ + E G++ + VPAA+ E+ ++I+ A++ Y+ L Sbjct: 224 NDLMAGEVDQIELRHGFFKIHQEAQPEKGSENAVIRVPAALPDEVIERIQKTAMKIYRIL 283 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 GC G+AR+D+FL + +V+NE+NT+PGFT+ S YP++ A+G T+++ RLIEL+L R Sbjct: 284 GCRGLARIDLFLREDGCIVLNEVNTMPGFTSYSRYPRMMTAAGFTLTEILDRLIELSLRR 343 >sp|Q47823|DDL_ENTGA D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAB17903.1| (U39789) D-alanine:D-alanine ligase [Enterococcus gallinarum] Length = 316 Score = 400 bits (1028), Expect = e-110 Identities = 116/320 (36%), Positives = 188/320 (58%), Gaps = 17/320 (5%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ +++GG+SAEH+VSL SA ++V+A+ + + V L+ I + GQW + + Sbjct: 1 MKIILLYGGRSAEHDVSLLSAFSVVNAVYYNYYQVQLVMITRDGQWLKGSLLTEAPTSKE 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 ++ +Q Q G+ ++FP++HG GEDG++QG L Sbjct: 61 VLNLTD-------------SAYQGTPIQPGEIKEEDAIVFPLLHGPNGEDGTIQGFLETI 107 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRHNISFAEVESKLGL 180 +P+VG+ VL SA MDK +TK +L+ AG+ P++ + + F + E L Sbjct: 108 GMPYVGAGVLTSACGMDKIMTKYILQAAGIPQVPYVPVLKNYWKENPKKVFEQCEGSLLY 167 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+F+KPAN GSSVG++K + E+ A+ A+ +D + IVEQGI+ REIE AVLGN++ + Sbjct: 168 PMFIKPANMGSSVGITKAENREELQNALQEAYRYDTRAIVEQGIEAREIEVAVLGNEDVR 227 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 + GEIV FY Y++KY+D + ++ +PA I E K + A +AY LG +G++R Sbjct: 228 TTMPGEIVKDVAFYDYNSKYLD-NKIEMQIPAQIPEETQAKAQEFAKKAYTMLGGSGLSR 286 Query: 301 VDVFLTPENEVVINEINTLP 320 D FLT +NE+ +NE+NT+P Sbjct: 287 CDFFLTNKNELFLNELNTIP 306 >sp|Q9ZGN0|DDL_MYCSM D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAC99396.1| (AF077728) D-alanine:D-alanine ligase [Mycobacterium smegmatis] Length = 373 Score = 399 bits (1027), Expect = e-110 Identities = 158/363 (43%), Positives = 223/363 (60%), Gaps = 16/363 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 + RV +V+GG+S+EH +S SA +I+ +D RF+VV +GI G W ++D L Sbjct: 10 RTRVAVVYGGRSSEHAISCVSAGSILRNLDPERFEVVAIGITPDGSWVLTDGRPETLAIT 69 Query: 63 D---PAHIALRPSATSLAQVPGKHEHQL-IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118 D PA + +L P + L + G+ L VDV+FP++HG GEDG++QG Sbjct: 70 DGKLPAVTEASGTELALPAAPNRSGQLLALGNGPGEILAAVDVVFPVLHGPYGEDGTIQG 129 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 +L +A +P+VGS VLASAA MDK+ TK+LL GL I + L E +L Sbjct: 130 LLELAGVPYVGSGVLASAAGMDKEYTKKLLAAEGLPIGDQVVLRPG--VETLDLEQRERL 187 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG--N 236 GLP+FVKPA GSS+GVS+VT+ ++ AV LA D KVIVE + GRE+EC VL + Sbjct: 188 GLPVFVKPARGGSSIGVSRVTAWDELPAAVALARRHDPKVIVEAAVIGRELECGVLEFPD 247 Query: 237 DNPQASTCGEIVLT------SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 +AST GEI + FY + TKY+ ED A++ VPA + ++ D+IR +AV+A+ Sbjct: 248 GRLEASTVGEIRVAGVRGREDGFYDFATKYL-EDAAELDVPAKVDDDVADEIRQLAVRAF 306 Query: 291 QTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 +GC G+ARVD FLT + VINEINT+PGFT ISMYP++W A G+ Y L+ +++ A Sbjct: 307 TAIGCQGLARVDFFLTDDG-PVINEINTMPGFTTISMYPRMWAAGGIDYPTLLAAMVDTA 365 Query: 351 LER 353 + R Sbjct: 366 IAR 368 >ref|NP_349497.1| (NC_003030) D-alanine-D-alanine ligase [Clostridium acetobutylicum] gb|AAK80837.1|AE007787_3 (AE007787) D-alanine-D-alanine ligase [Clostridium acetobutylicum] Length = 343 Score = 397 bits (1020), Expect = e-109 Identities = 139/358 (38%), Positives = 217/358 (59%), Gaps = 20/358 (5%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K +V I+FGG+S EHEVS SA +++ ID S++D+ +GI K+G+W S + Sbjct: 2 KKKVAILFGGQSTEHEVSRVSAASVLRNIDTSKYDLFPIGITKKGEWFEYTGSADKIENG 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + S A + K VDV+FP++HG GEDG++QG+ ++ Sbjct: 62 EWEKDEFYKSPNGQAILFNK---------------EVDVVFPVMHGLYGEDGTIQGLCKL 106 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRHNISFAEVESKLG 179 +P VG VL+S+ CMDK TK +L + A ++ + E+E+KLG Sbjct: 107 VGVPCVGPSVLSSSVCMDKVYTKYVLEHFNIKQADYVVVHAHEYKTSKEEIIKEIENKLG 166 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 +F+KP+N GSSVG++K + ++ ++ A ++D K++VE+ + REIE AVLGN+ P Sbjct: 167 YAVFIKPSNSGSSVGITKAHNRKELEAGLEEAMKYDRKILVEEALNAREIEVAVLGNEEP 226 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 +A+ GEIV +FY Y+ KY + +K+++PA ++ E +KI+ IA++ Y+ L C+GM+ Sbjct: 227 KAAIPGEIVPAKEFYDYEAKYENA-ASKLLIPANLSNENLEKIKNIAIEVYKALDCSGMS 285 Query: 300 RVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 RVD + + E+ +NE+NT+PGFT+ISMYPKLW A+G Y+ LI LIELA R+ A Sbjct: 286 RVDFLVDKDTTEMYLNEVNTIPGFTSISMYPKLWAAAGKDYSKLIDELIELAASRNNA 343 >ref|NP_294085.1| (NC_001263) D-alanine--D-alanine ligase [Deinococcus radiodurans] pir||D75529 D-alanine--D-alanine ligase - Deinococcus radiodurans (strain R1) gb|AAF09941.1|AE001896_6 (AE001896) D-alanine--D-alanine ligase [Deinococcus radiodurans] Length = 339 Score = 396 bits (1017), Expect = e-109 Identities = 151/355 (42%), Positives = 220/355 (61%), Gaps = 24/355 (6%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K R+ ++ GG+S EHEVSL+SA++++ A+ + +FDV + I KQG+W + L Sbjct: 2 KRRILLLAGGQSGEHEVSLRSARSVLAALPRDQFDVTPVVISKQGRWLPPTETQKALETG 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + + D +FP++HG +GEDG++QG+L + Sbjct: 62 ------------------VSSQGGDLMLHRAAAAEGYDAVFPLLHGPMGEDGTIQGLLTL 103 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPF-ITLTRANRHNIS-FAEVESKLGL 180 A +PFVGS VL SA MDK +TK++L AG+ + + + R + ++LG Sbjct: 104 AGIPFVGSGVLGSAVSMDKVMTKQVLDSAGIPQVAWRLAVRREWQQTPDAVRARAAELGY 163 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGI--KGREIECAVLGNDN 238 PLFVKPAN GSSVG+SKV S E+ A+ LAF D +VI+E K RE+E +LGND Sbjct: 164 PLFVKPANLGSSVGISKVGSPEELDAALTLAFGLDRRVILEAMTPHKPREVEVGILGNDV 223 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 P AS GE+ +DFY Y+TKY E A++ +PA I PE++++IR A++A++ L CAG+ Sbjct: 224 PVASPVGELSFDADFYDYETKYT-EGRAEMHIPARIPPEVSERIRTEALRAFRALDCAGL 282 Query: 299 ARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 ARVD F E E+ +NE+NT+PGFT SMYPKL++A+GL Y++L+TRL+ELALE Sbjct: 283 ARVDFFYVEETGELFLNEVNTMPGFTTTSMYPKLFEAAGLSYSELVTRLVELALE 337 >gb|AAC23582.1| (U82965) D-alanine:D-alanine ligase-related protein [Streptomyces toyocaensis] Length = 340 Score = 394 bits (1013), Expect = e-109 Identities = 124/351 (35%), Positives = 201/351 (56%), Gaps = 18/351 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +L++GIVFGG+S EH VS++SA+ + +D +++ +GI K G W + D + Sbjct: 1 MARLKIGIVFGGRSEEHPVSIKSAREVARNLDLEKYEPFYIGITKSGAWKLCDGPDAEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 D + L P + L+ Q G +DV+ P++HG LGEDG++QG+L Sbjct: 61 DGDCRPVVLSPDS--------DVHGLLVLEQGGCSTIRLDVVLPVLHGKLGEDGAMQGLL 112 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 ++ +P+VG D+ +SA CMDK + ++R+AG+ F T+ + ++ Sbjct: 113 ELSGIPYVGCDIQSSAVCMDKSLAYAVVRNAGIATPNFWTVAADETVD------AARFTY 166 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-NP 239 P+FVKPA GSS GV+KV+ EE+ + AV+ A ++D KV++E+ + G EI CA+LG + Sbjct: 167 PVFVKPARSGSSFGVTKVSREEEMSSAVETARQYDSKVLIEEAVPGSEIGCAILGTGTDL 226 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 I L+ F+ + E G++ +VPA I +++ A Y+ LGC Sbjct: 227 VVGEVDRIALSHGFFRIHQEDSPETGSENSIAIVPADIPEASRLRVQEEAKAVYRVLGCR 286 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 G+ARVD+FL + EVV+NE+NTLPG T+ S YP++ A+GL +++I + Sbjct: 287 GIARVDMFLKEDGEVVLNEVNTLPGLTSYSRYPRMMAAAGLPMSEVIDLTV 337 >ref|NP_302152.1| (NC_002677) D-alanine-D-alanine ligase A [Mycobacterium leprae] emb|CAC30631.1| (AL583923) D-alanine-D-alanine ligase A [Mycobacterium leprae] Length = 384 Score = 392 bits (1008), Expect = e-108 Identities = 155/367 (42%), Positives = 223/367 (60%), Gaps = 20/367 (5%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLL--- 59 ++RV +VFGG+S EH VS SA +I+ +D+ RFDVV +GI +G W ++D + L Sbjct: 17 RVRVAVVFGGRSNEHAVSCLSAGSILRNLDRQRFDVVAVGITPEGTWMLTDPNPDALAIA 76 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQN-----GQPLPTVDVIFPIVHGTLGEDG 114 N PA +L P + + + G+ L +VDV+FP++HG GEDG Sbjct: 77 NRQLPAVSCESGIELTLPADPRRSGQLVSLSHGAGLGAGEVLTSVDVVFPVLHGPYGEDG 136 Query: 115 SLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 ++QG+L +A +P+VG+ VLASAA MDK+ TK+L GL ++ + L R R + E Sbjct: 137 TIQGLLELARVPYVGAGVLASAAGMDKEFTKKLFAAEGLPLSAYTVL-RPLRPTLHRQEC 195 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL 234 E +L LP+FVKPA GSS+G+S+V+S Q A+ A D KVIVE + GRE+EC VL Sbjct: 196 E-RLSLPVFVKPARGGSSIGISRVSSWGQLPSAIAYARRHDPKVIVEAAVNGRELECGVL 254 Query: 235 G--NDNPQASTCGEIVLT------SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIA 286 + AS GEI + FY + TKY+D D A++ VPA + ++ D++R +A Sbjct: 255 EMPDGTVAASAVGEIRVAGVSGSEDSFYDFTTKYLD-DAAELDVPAKVDDDVADEVRQLA 313 Query: 287 VQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 +QA++ + C G+ARVD FLT + VINEINT+PGFT SMYPKLW S + Y L+ + Sbjct: 314 IQAFRAIDCQGLARVDFFLTDDG-PVINEINTMPGFTMTSMYPKLWAVSSVDYPTLLATM 372 Query: 347 IELALER 353 ++ AL R Sbjct: 373 VDTALAR 379 >ref|NP_337574.1| (NC_002755) D-alanine--D-alanine ligase [Mycobacterium tuberculosis CDC1551] gb|AAK47388.1| (AE007126) D-alanine--D-alanine ligase [Mycobacterium tuberculosis CDC1551] Length = 373 Score = 392 bits (1007), Expect = e-108 Identities = 159/363 (43%), Positives = 228/363 (62%), Gaps = 16/363 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 ++RV +VFGG+S EH +S SA +I+ +D RFDV+ +GI G W ++DA+ L Sbjct: 10 RVRVAVVFGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTIT 69 Query: 63 DPAHIALRPSATSLAQVP--GKHEHQLID--AQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118 + ++ + + +P + QL+ G+ L +VDV+FP++HG GEDG++QG Sbjct: 70 NRELPQVKSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQG 129 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 +L +A +P+VG+ VLASA MDK+ TK+LL GL + + L R R + E E +L Sbjct: 130 LLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVL-RPPRSTLHRQECE-RL 187 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG--N 236 GLP+FVKPA GSS+GVS+V+S +Q AV A D KVIVE I GRE+EC VL + Sbjct: 188 GLPVFVKPARGGSSIGVSRVSSWDQLPAAVARARRHDPKVIVEAAISGRELECGVLEMPD 247 Query: 237 DNPQASTCGEIVLT------SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 +AST GEI + FY + TKY+D D A++ VPA + ++ + IR +A++A+ Sbjct: 248 GTLEASTLGEIRVAGVRGREDSFYDFATKYLD-DAAELDVPAKVDDQVAEAIRQLAIRAF 306 Query: 291 QTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + C G+ARVD FLT + VINEINT+PGFT ISMYP++W ASG+ Y L+ +IE A Sbjct: 307 AAIDCRGLARVDFFLTDDG-PVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIETA 365 Query: 351 LER 353 L R Sbjct: 366 LAR 368 >gb|AAF71281.1|AF253562_5 (AF253562) ligase [Enterococcus faecalis] Length = 349 Score = 391 bits (1006), Expect = e-108 Identities = 133/352 (37%), Positives = 210/352 (58%), Gaps = 3/352 (0%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+ ++ ++FGG S E+EVSLQSA + + I+ ++FD++ +GI + G+W+ + Sbjct: 1 MQNKKIAVIFGGNSTEYEVSLQSASAVFENINTNKFDIIPIGITRSGEWYHYTGEKEKIL 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + + ++Q L A + + VD++FP++HG GE+G+LQG+ Sbjct: 61 NNTWFEDSKNLCPVVVSQNRSVKGF-LEIASDKYRIIKVDLVFPVLHGKNGENGTLQGIF 119 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 +A +P VG D L+SA CMDKD +L+ AG+++ +T R N + E+E+ L Sbjct: 120 ELAGIPVVGCDTLSSALCMDKDRAHKLVSLAGISVPKSVTFKRFNE-EAAMKEIEANLTY 178 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 PLF+KP GSS G++KV +++ A++LAFE D +VIVE+ I G E+ CAVLG D Sbjct: 179 PLFIKPVRAGSSFGITKVIEKQELDAAIELAFEHDTEVIVEETINGFEVGCAVLGIDELI 238 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 EI L+S F+ Y KY +K+ +PA I E +I+ AV Y+ LGC+G +R Sbjct: 239 VGRVDEIELSSGFFDYTEKYT-LKSSKIYMPARIDAEAEKRIQEAAVTIYKALGCSGFSR 297 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 VD+F TP E+V NE+NT+PGFT+ S YP + + GL ++ ++ +LI L +E Sbjct: 298 VDMFYTPSGEIVFNEVNTIPGFTSHSRYPNMMKGIGLSFSQMLDKLIGLYVE 349 >ref|NP_217497.1| (NC_000962) ddlA [Mycobacterium tuberculosis H37Rv] sp|P95114|DDL_MYCTU D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||B70673 probable ddlA - Mycobacterium tuberculosis (strain H37RV) emb|CAB05431.1| (Z83018) ddlA [Mycobacterium tuberculosis H37Rv] Length = 373 Score = 390 bits (1003), Expect = e-107 Identities = 158/363 (43%), Positives = 227/363 (62%), Gaps = 16/363 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 ++RV +VFGG+S EH +S SA +I+ +D RFDV+ +GI G W ++DA+ L Sbjct: 10 RVRVAVVFGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTIT 69 Query: 63 DPAHIALRPSATSLAQVP--GKHEHQLID--AQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118 + ++ + + +P + QL+ G+ L +VDV+FP++HG GEDG++QG Sbjct: 70 NRELPQVKSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQG 129 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 +L +A +P+VG+ VLASA MDK+ TK+LL GL + + L R R + E E +L Sbjct: 130 LLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVL-RPPRSTLHRQECE-RL 187 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG--N 236 GLP+FVKPA GSS+GVS+V+S +Q AV A D KVIVE I GRE+EC VL + Sbjct: 188 GLPVFVKPARGGSSIGVSRVSSWDQLPAAVARARRHDPKVIVEAAISGRELECGVLEMPD 247 Query: 237 DNPQASTCGEIVLT------SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 +AST GEI + FY + TKY+D D A++ VPA + ++ + IR +A++A+ Sbjct: 248 GTLEASTLGEIRVAGVRGREDSFYDFATKYLD-DAAELDVPAKVDDQVAEAIRQLAIRAF 306 Query: 291 QTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + C G+ARVD FLT + VINEINT+PGFT ISMYP++W ASG+ Y L+ +IE Sbjct: 307 AAIDCRGLARVDFFLTDDG-PVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIETT 365 Query: 351 LER 353 L R Sbjct: 366 LAR 368 >gb|AAD19835.1| (AF060799) D-alanyl-D-alanine ligase [Amycolatopsis orientalis] Length = 348 Score = 388 bits (998), Expect = e-107 Identities = 128/357 (35%), Positives = 210/357 (57%), Gaps = 20/357 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +L++GI+FGG S EH +S++SA+ + +D +++ +GI + G W + D Sbjct: 1 MGRLKIGILFGGLSEEHPISIKSAREVQKHLDLEKYEPYYIGITQSGSWMLCDGP----- 55 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGM 119 A+D + +RP+ S P + H L+ G+ +DV+ P++HG GEDG++QG+ Sbjct: 56 AEDWENGDVRPAVLS----PDRGVHGLLVLDEGKYETIALDVVLPVLHGKFGEDGAMQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L ++ +P+VG D+ +S C+DK +T ++R AG+ F +T N + L Sbjct: 112 LEISGIPYVGCDLPSSVMCIDKSLTYSVVRGAGIATPTFHIVTPDNDVDPD------ALN 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN-DN 238 P+FVKPA GSS GVSKV+S+E+ A+ A ++D K+++E+ + G EI C++LG+ ++ Sbjct: 166 YPVFVKPARSGSSFGVSKVSSKEELPAALAEARQYDAKILIEEAVIGSEIGCSILGDGED 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 A + LT F+ + E G++ +VPA I D ++ A Y+ LGC Sbjct: 226 LFAGEVDRVALTHGFFKIHQEKSPETGSENSSFIVPADIPDASRDLVQETAKVIYRALGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 +G+ARVD+FL + VV+NE+NTLPG T+ S YP++ A+GL D+I RL++L L Sbjct: 286 SGLARVDLFLKEDGSVVLNEVNTLPGLTSYSRYPRMMNAAGLSLGDVIDRLVKLTLA 342 >ref|NP_219107.1| (NC_000919) D-alanine--D-alanine ligase (ddlA) [Treponema pallidum] sp|O83676|DDL_TREPA D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||A71296 D-alanine--D-alanine ligase (EC 6.3.2.4) A ddlA - syphilis spirochete gb|AAC26568.1| (AE001241) D-alanine--D-alanine ligase (ddlA) [Treponema pallidum] Length = 396 Score = 388 bits (997), Expect = e-107 Identities = 128/346 (36%), Positives = 203/346 (57%), Gaps = 5/346 (1%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 V +++GG+SAEH+VS++SA+ + + + V+L+GI ++G W+ A Sbjct: 3 HVTLLYGGRSAEHDVSVRSARFVARTL-CLQHTVMLIGITRRGVWYAQPACALEQLCTGT 61 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 ++++ + G P T DV+FP++HG+ GEDG++QG+L + Sbjct: 62 VALSIQEDEKRRVCLVPGGGTAGAFVIAGMPCVT-DVVFPVLHGSYGEDGTVQGLLEMLQ 120 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA---NRHNISFAEVESKLGLP 181 +P+VG V ASA MDK K L + AGL + PF+ + A++E++LG P Sbjct: 121 VPYVGCGVCASALAMDKVKAKMLWQAAGLPVLPFVFFRKDAWRMHMQEFVAQLETRLGYP 180 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 LFVKPA GSSVG S V + A++ AF++D V+VE+ ++ REIECA+ GN Sbjct: 181 LFVKPAQAGSSVGASAVQTRAPLIPAIEAAFQWDEVVLVERYVRAREIECALSGNGPYTV 240 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 GE++ FY Y+ KY D A+V+V A + ++I +A++AY+ LG G+ARV Sbjct: 241 HGAGEVIAQGAFYDYEEKYADASVARVLVTAPLETAQYEQITTLALRAYEALGLTGLARV 300 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 D FL EV +NE+NT+PGFT+IS++P++ QA+G+ DL+ +L+ Sbjct: 301 DFFLLETGEVYVNEVNTMPGFTSISLFPQICQAAGVAPQDLMAQLL 346 >sp|P29753|VANC_ENTGA VANCOMYCIN C-TYPE RESISTANCE PROTEIN VANC (VANC LIGASE) pir||JN0249 vancomycin resistance protein vanC - Enterococcus gallinarum gb|AAA24786.1| (AF162694) D-alanine-D-alanine ligase-related protein [Enterococcus gallinarum] Length = 343 Score = 385 bits (990), Expect = e-106 Identities = 120/353 (33%), Positives = 184/353 (51%), Gaps = 18/353 (5%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 ++ ++FGG S E+ VSL SA +++ AID +++V+ +GI W+ + Sbjct: 2 KKIAVLFGGNSPEYSVSLTSAASVIQAIDPLKYEVMTIGIAPTMDWYWYQGN-------- 53 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQN----GQPLPTVDVIFPIVHGTLGEDGSLQGM 119 L K+ HQL + G+ DV+FP++HG GEDG +QG+ Sbjct: 54 -----LANVRNDTWLEDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGL 108 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L + NLP+VG V ASA CM+K + +L G+ AP + L+R + G Sbjct: 109 LELMNLPYVGCHVAASALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHG 168 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+F+KP GSS G++KVT + A+ AF + V++++ I G EI C +LGN+ Sbjct: 169 FPIFIKPNEAGSSKGITKVTDKTALQSALTTAFAYGSTVLIQKAIAGIEIGCGILGNEQL 228 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 C I L F+ ++ KY A + VPA + + +I+ A Y+ LG G+A Sbjct: 229 TIGACDAISLVDGFFDFEEKY-QLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLA 287 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 R+D F+T + + +NEINT+PGFT S YP + GL Y L+ +LI LA E Sbjct: 288 RIDFFVTNQGAIYLNEINTMPGFTGHSRYPAMMAEVGLSYEILVEQLIALAEE 340 >gb|AAL27442.1|AF430807_7 (AF430807) VanE [Enterococcus faecalis] Length = 352 Score = 382 bits (983), Expect = e-105 Identities = 110/351 (31%), Positives = 198/351 (56%), Gaps = 8/351 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 V I+FGG S+E+EVSL+SA I+ ++ ++V+ +GI ++G W++ + + + D Sbjct: 2 KTVAIIFGGVSSEYEVSLKSAVAIIKNMESIDYNVMKIGITEEGHWYLFEGTTDKIKKDR 61 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 L S + K +N + + D++FP++HG GE+G++QG+ + Sbjct: 62 WF---LDESCEEIVVDFAKKS---FVLKNSKKIIKPDILFPVLHGGYGENGAMQGVFELL 115 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 ++P+VG + A+A M+K + + G+ P + + + G PL+ Sbjct: 116 DIPYVGCGIGAAAISMNKIMLHQFAEAIGVKSTPSMIIEKGQDLQ-KVDAFAKIHGFPLY 174 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 +KP GSS G+SKV + A+D A ++D ++++++ +KG EI C +LGN+ Sbjct: 175 IKPNEAGSSKGISKVERKSDLYKAIDEASKYDSRILIQKEVKGVEIGCGILGNEQLVVGE 234 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 C +I L F+ Y+ KY + A++++PA ++ + + I+ A + Y+ LGC G+AR+D Sbjct: 235 CDQISLVDGFFDYEEKY-NLVTAEILLPAKLSIDKKEDIQMKAKKLYRLLGCKGLARIDF 293 Query: 304 FLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 FLT + E+++NEINT+PGFT S +P + G+ Y ++I L+ LA+E H Sbjct: 294 FLTDDGEILLNEINTMPGFTEHSRFPMMMNEIGMDYKEIIENLLVLAVENH 344 >ref|NP_539644.1| (NC_003317) D-ALANINE--D-ALANINE LIGASE A [Brucella melitensis] gb|AAL51908.1| (AE009514) D-ALANINE--D-ALANINE LIGASE A [Brucella melitensis] Length = 366 Score = 382 bits (982), Expect = e-105 Identities = 150/357 (42%), Positives = 226/357 (63%), Gaps = 16/357 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K+R+ ++FGG+SAEH+VS+ SA N+++A+D ++++ V + + + GQW +S N L Sbjct: 18 KMRIVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKP 77 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLP--TVDVIFPIVHGTLGEDGSLQGML 120 S L VPG ++ G P +D+IFP++HG GEDG++QG+ Sbjct: 78 S--------SGAELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLA 129 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 +VA +P G + SA +DKD+ KRL+ +AGL+ A +T+TR +F+ +E LGL Sbjct: 130 QVARVPLAGCGIPGSANALDKDIAKRLVNEAGLSTAKSVTITREE--VPAFSALEQALGL 187 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN-- 238 P+F+KPA QGSSVGV KV +E Y A+ F +D K++ E+ I+ RE+EC VL ++ Sbjct: 188 PIFIKPARQGSSVGVHKVVTEADYQAAMSDGFIYDDKLLAEEFIQAREVECGVLEDEGGA 247 Query: 239 PQASTCGEIVLTSD--FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 S GEIV FY+YD KYID DG ++ VPA + ++ ++IRAIA +A++ LGC Sbjct: 248 LFVSRAGEIVPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCD 307 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 MARVD F+T + +V+NEINT+PGFT++SMY K+ SG+ Y ++I RL+ L R Sbjct: 308 SMARVDFFVTADRRIVLNEINTIPGFTDMSMYFKVMAVSGVSYPEIINRLVAHGLAR 364 >sp|Q9ZBR9|DDL_STRCO D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||T35644 D-alanine-D-alanine ligase - Streptomyces coelicolor emb|CAA22403.1| (AL034447) D-alanine-D-alanine ligase [Streptomyces coelicolor A3(2)] Length = 389 Score = 382 bits (981), Expect = e-105 Identities = 142/367 (38%), Positives = 216/367 (58%), Gaps = 18/367 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K RV +VFGG+S+EH +S+ +A ++ AID++R+DV+ +GI + G+W ++ + Sbjct: 20 KPRVAVVFGGRSSEHGISVVTAGAVLAAIDRTRYDVLPIGITRDGRWALTADEPERMAIT 79 Query: 63 D---PAHIALRPSATSLAQVP-GKHEHQLIDAQNG---QPLPTVDVIFPIVHGTLGEDGS 115 + P L S +P +++ ++ G + L VDV+FP++HG GEDG+ Sbjct: 80 ERRTPDVEELAESTEGGVLLPVDPANREVVYSEPGSVPKALGEVDVVFPVLHGPYGEDGT 139 Query: 116 LQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITL-TRANRHNISFAE- 173 LQG+L ++ +P+VG+ VLASA DK+ K + GL + P+ + R + S A Sbjct: 140 LQGLLELSGVPYVGAGVLASAVGQDKEYMKAVFTSYGLKVGPYAVIRPREWEQDRSGARK 199 Query: 174 ----VESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 + G PLFVKPA GSS+G++KV A++ A D K++VE ++GREI Sbjct: 200 KIVDFAGEHGWPLFVKPARAGSSIGITKVDDLAGLDEAIEEARRHDPKILVEAALRGREI 259 Query: 230 ECAVLG-NDNPQASTCGEIVLT--SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIA 286 EC VL D P+AS EI +Y ++ KYID +VPA + E +++ +A Sbjct: 260 ECGVLEFEDGPRASVPAEIPPPSEHAYYDFEAKYIDS--TPGIVPAPLTAEETAEVQRLA 317 Query: 287 VQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 V A+ C G+ R D FLT ++E VINEINT+PGFT ISMYP++WQASG+ Y +L+ RL Sbjct: 318 VAAFDAASCEGLVRADFFLTEDDEFVINEINTMPGFTPISMYPQMWQASGVSYPELVDRL 377 Query: 347 IELALER 353 ++ AL R Sbjct: 378 VQAALRR 384 >gb|AAA60990.1| (L29638) ligase [Enterococcus casseliflavus] Length = 350 Score = 375 bits (963), Expect = e-103 Identities = 130/357 (36%), Positives = 190/357 (52%), Gaps = 19/357 (5%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKS--RFDVVLLGIDKQGQWHVSDASNYLLNA 61 ++ I+FGG S E+ VSL SA + ++A+ S +D+ L+GI DA ++ L Sbjct: 2 KKIAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGIAP-------DAMDWYLYT 54 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNG------QPLPTVDVIFPIVHGTLGEDGS 115 + +I T L K + Q + NG Q DV+FPI+HG GEDGS Sbjct: 55 GELENIRQD---TWLLDTKHKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGS 111 Query: 116 LQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVE 175 +QG+ + LP+VG V SA CM+K + + G+ AP I LT Sbjct: 112 IQGLFELMKLPYVGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFI 171 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 G P+F KP GSS G++KVT E+ A A+ AF + V++++ I G EI C +LG Sbjct: 172 QTHGFPVFFKPNEAGSSKGITKVTCVEEIASALKEAFTYCSAVLLQKNIAGVEIGCGILG 231 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 ND+ C I L F+ ++ KY AK+ VPA + I K++ A Y++LG Sbjct: 232 NDSLTVGACDAISLVDGFFDFEEKY-QLISAKITVPAPLPETIETKVKEQAQLLYRSLGL 290 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 G+AR+D F+T E+ +NEINT+PGFT+ S YP + A GL Y +L+ +L+ LA E Sbjct: 291 KGLARIDFFVTERGELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLLVLAKE 347 >pdb|1EHI|A Chain A, D-Alanine:d-Lactate Ligase (Lmddl2) Of Vancomycin-Resistant Leuconostoc Mesenteroides pdb|1EHI|B Chain B, D-Alanine:d-Lactate Ligase (Lmddl2) Of Vancomycin-Resistant Leuconostoc Mesenteroides Length = 377 Score = 365 bits (938), Expect = e-100 Identities = 129/367 (35%), Positives = 215/367 (58%), Gaps = 13/367 (3%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKS-RFDVVLLGIDKQGQWHVSDASNYLL 59 M K RV ++FGG S+EH+VS +SA+N +AI+ + ++++++ I + G + +++S +L Sbjct: 1 MTKKRVALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKIL 60 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 +D I T A P H L A + D+ FP+VHG LGEDG+LQG+ Sbjct: 61 ALEDEQPIVDAFMKTVDASDPLARIHALKSAGD------FDIFFPVVHGNLGEDGTLQGL 114 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ + P+VG+ + A DK +TK LL G+ +I + + +N S+ ++ ++LG Sbjct: 115 FKLLDKPYVGAPLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELG 174 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGNDN 238 +FVK ANQGSSVG+S+VT+ E+Y A+ +F++D+KV++E+ + G RE+E V+GND Sbjct: 175 NIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVNGARELEVGVIGNDQ 234 Query: 239 PQASTCGEIVLTS-----DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 P S G + + +Y Y+ K++D +PA ++PE+ +++ +A+ AY+ L Sbjct: 235 PLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQLSPEVTKEVKQMALDAYKVL 294 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G AR+D L N + E NTLPGFTN+S++ +LW S + L+ LI+ E Sbjct: 295 NLRGEARMDFLLDENNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLIDYGFED 354 Query: 354 HAADNAL 360 A + L Sbjct: 355 FAQNKKL 361 >gb|AAB18338.1| (U75444) D-Ala-D-Ala ligase2 [Leuconostoc mesenteroides] Length = 377 Score = 364 bits (935), Expect = e-100 Identities = 129/367 (35%), Positives = 215/367 (58%), Gaps = 13/367 (3%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKS-RFDVVLLGIDKQGQWHVSDASNYLL 59 M K RV ++FGG S+EH+VS +SA+N +AI+ + ++++++ I + G + +++S +L Sbjct: 1 MTKKRVALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKIL 60 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 +D I T A P H L A + D+ FP+VHG LGEDG+LQG+ Sbjct: 61 ALEDEQPIVDAFMKTVDASDPLARIHALKSAGD------FDIFFPVVHGNLGEDGTLQGL 114 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ + P+VG+ + A DK +TK LL G+ +I + + +N S+ ++ ++LG Sbjct: 115 FKLLDKPYVGAPLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELG 174 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGNDN 238 +FVK ANQGSSVG+S+VT+ E+Y A+ +F++D+KV++E+ + G RE+E V+GND Sbjct: 175 NIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVNGARELEVGVIGNDQ 234 Query: 239 PQASTCGEIVLTS-----DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 P S G + + +Y Y+ K++D +PA ++PE+ +++ +A+ AY+ L Sbjct: 235 PLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFEIPAQLSPEVTKEVKQMALDAYKVL 294 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G AR+D L N + E NTLPGFTN+S++ +LW S + L+ LI+ E Sbjct: 295 NLRGEARMDFLLDENNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLIDYGFED 354 Query: 354 HAADNAL 360 A + L Sbjct: 355 FAQNKKL 361 >sp|Q48745|DDL_LEUME D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAA87679.1| (U08909) putative D-alanine:D-alanine ligase [Leuconostoc mesenteroides] Length = 377 Score = 364 bits (934), Expect = 1e-99 Identities = 128/367 (34%), Positives = 213/367 (57%), Gaps = 13/367 (3%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAID-KSRFDVVLLGIDKQGQWHVSDASNYLL 59 M K RV ++FGG S+EH+VS +SA+N +AI+ ++++++ I + G + +++S +L Sbjct: 1 MTKKRVALIFGGNSSEHDVSKRSAQNFYNAIEATDKYEIIVFAIAQNGFFLDTESSKKIL 60 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 +D I T P H L A + D+ FP+VHG LGEDG+LQG+ Sbjct: 61 ALEDEQPIVDAFMKTVDTSDPLARIHALKSAGD------FDIFFPVVHGNLGEDGTLQGL 114 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ + P+VG+ + A DK +TK LL G+ +I + + +N S+ ++ ++LG Sbjct: 115 FKLLDKPYVGAPLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELG 174 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGNDN 238 +FVK ANQGSSVG+S+VT+ E+Y A+ +F++D+KV++E+ + G RE+E V+GND Sbjct: 175 NIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVNGARELEVGVIGNDQ 234 Query: 239 PQASTCGEIVLTS-----DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 P S G + + +Y Y+ K++D +PA ++PE+ +++ +A+ AY+ L Sbjct: 235 PLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFEIPAQLSPEVTKEVKQMALDAYKVL 294 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G AR+D L N + E NTLPGFTN+S++ +LW S + L+ LI+ E Sbjct: 295 NLRGEARMDFLLDENNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLIDYGFED 354 Query: 354 HAADNAL 360 A + L Sbjct: 355 FAQNKKL 361 >ref|NP_220281.1| (NC_000117) UDP-N-acetylmuramate-alanine ligase and D-Ala-D-Ala Ligase [Chlamydia trachomatis] sp|O84767|MUDD_CHLTR MURC/DDL BIFUNCTIONAL ENZYME [INCLUDES: UDP-N-ACETYLMURAMATE--ALANINE LIGASE (UDP-N-ACETYLMURAMOYL-L-ALANINE SYNTHETASE); D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE)] pir||A71475 probable muramate-Ala ligase and D-Ala-D-Ala ligase - Chlamydia trachomatis (serotype D, strain UW3/Cx) gb|AAC68357.1| (AE001348) UDP-N-acetylmuramate-alanine ligase and D-Ala-D-Ala Ligase [Chlamydia trachomatis] Length = 803 Score = 361 bits (928), Expect = 6e-99 Identities = 116/370 (31%), Positives = 181/370 (48%), Gaps = 30/370 (8%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +KL +GI+ GGKS EHE+S+ SAKNI + KS +DV I ++G W Sbjct: 446 QKLHLGIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITREGLW------------ 493 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 S+ A+ GK + D + Q L VDV+ PI+HG GEDG++QG L Sbjct: 494 -------ESVSSLETAEDSGKS---VFDPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLE 543 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT---RANRHNISFAEVESKL 178 P+ G + SA M+K TKR + D G+ + P++ LT + A + Sbjct: 544 TIGKPYTGPAIAFSAIAMNKVFTKRFMSDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAF 603 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGR-EIECAVLGND 237 P+FVK ++ GSS+GV +V + + A++ AF D+ V VE+ G EIE +VLG+ Sbjct: 604 SFPIFVKSSHLGSSIGVFEVHNVIELRDAINEAFMRDNDVFVEENRLGCKEIEVSVLGDG 663 Query: 238 NPQASTCG--EIVLTSDFYAYDTKY--IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 + G E + F Y KY + A++V ++ EI ++I A + Y+ L Sbjct: 664 SGAFVVAGLHERRGSGGFIDYQEKYGLSGKSSAQIVFDTDLSKEIQEQILEAADKIYRLL 723 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G R+D F+ E ++E+N +PG T S + + G Y ++ +L+ L+R Sbjct: 724 LGKGSCRIDFFVDEEGNFWLSEMNPIPGMTETSPFLTSFIRKGWSYEQIVHQLVIDGLQR 783 Query: 354 HAADNALKTT 363 L +T Sbjct: 784 FNQRQRLIST 793 >ref|NP_439298.1| (NC_000907) D-alanine--D-alanine ligase (ddlB) [Haemophilus influenzae Rd] sp|P44405|DDL_HAEIN D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||F64185 D-alanine--D-alanine ligase (EC 6.3.2.4) B - Haemophilus influenzae (strain Rd KW20) gb|AAC22795.1| (U32794) D-alanine--D-alanine ligase (ddlB) [Haemophilus influenzae Rd] Length = 306 Score = 350 bits (899), Expect = 1e-95 Identities = 109/351 (31%), Positives = 176/351 (50%), Gaps = 47/351 (13%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 +++ ++ ++ GG SAE EVSL S K +++A+ K ++ + Sbjct: 3 LKQEKIAVLLGGTSAEREVSLNSGKAVLEALLKQGYNAHPI------------------- 43 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 P ++A + + F I+HG GEDG++QG+L Sbjct: 44 ---------DPKEYNVANLK---------------KDGFNRAFNILHGRGGEDGTMQGLL 79 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 LP+ G V+ASA MDK TK L + GL +A +TR + V +KLGL Sbjct: 80 EQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFSELDPQAVVAKLGL 139 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 PL VKP+ +GSSVG++KV + E+ AV+ A +FD+ +++E+ + G E+ VL N Q Sbjct: 140 PLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKFDNTILIEEWLAGDELTVPVLDN---Q 196 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 IV +FY Y+ KYI D + PA + PE + + +AY +GC G +R Sbjct: 197 VLPAIRIVPEGEFYDYEAKYI-SDNTQYFCPAGLTPEREQALSTLVKRAYDAVGCRGWSR 255 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 +DV + + E+NT PG T+ S++PK G+ + L+ +++EL+L Sbjct: 256 IDVMCDAKGNFRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILELSL 306 >ref|NP_296522.1| (NC_002620) UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase [Chlamydia muridarum] pir||B81737 UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase TC0143 [imported] - Chlamydia muridarum (strain Nigg) gb|AAF39021.1| (AE002281) UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase [Chlamydia muridarum] Length = 833 Score = 349 bits (896), Expect = 2e-95 Identities = 106/370 (28%), Positives = 178/370 (47%), Gaps = 30/370 (8%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +KL +G++ GG+S EH++S+ SA+NI + S ++V I ++G W Sbjct: 476 KKLSLGLICGGRSCEHDISILSAQNIAKYLSHSFYEVQYFLITREGLWKTG--------- 526 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 S+ L++ GK + D + L VDVI PI+HG GEDG++QG L Sbjct: 527 ----------SSLELSEETGK---TIFDPEIAGKLSKVDVILPILHGPYGEDGAMQGFLE 573 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT---RANRHNISFAEVESKL 178 P+ G ++ +A M+K +TKR + D G+ + P++ LT A++++ Sbjct: 574 TIGKPYTGPSLVFAAIGMNKVLTKRFMSDLGIPVVPYLPLTLKGWKQDQEKCLAQIKAAF 633 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGND 237 P+FVK + GSS+GV +V + A++ AF D V +E+ G REIE + LG+ Sbjct: 634 SFPMFVKSVHLGSSIGVFEVHDTNELRDAINEAFVRDDDVFIEESRLGCREIEVSFLGDG 693 Query: 238 NPQASTCG--EIVLTSDFYAYDTKYIDEDG--AKVVVPAAIAPEINDKIRAIAVQAYQTL 293 + G E F Y KY A++V ++ E +++ +A + Y+ L Sbjct: 694 SGVFFVAGMHERRGRGGFIDYQEKYGLSGRASAQIVFDVDLSKETREQLLGVAEKIYRLL 753 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G R+D F+ E ++EIN +PG T S + + G ++ +L+ L+R Sbjct: 754 QGKGSCRIDFFVDNEGSFWLSEINPIPGMTTASPFLAAFVRKGWNREQIVHQLVIDGLQR 813 Query: 354 HAADNALKTT 363 L +T Sbjct: 814 FDQRQRLIST 823 >sp|Q9PLG1|MUDD_CHLMU MURC/DDL BIFUNCTIONAL ENZYME [INCLUDES: UDP-N-ACETYLMURAMATE--ALANINE LIGASE (UDP-N-ACETYLMURAMOYL-L-ALANINE SYNTHETASE); D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE)] Length = 802 Score = 348 bits (893), Expect = 5e-95 Identities = 106/370 (28%), Positives = 178/370 (47%), Gaps = 30/370 (8%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +KL +G++ GG+S EH++S+ SA+NI + S ++V I ++G W Sbjct: 445 KKLSLGLICGGRSCEHDISILSAQNIAKYLSHSFYEVQYFLITREGLWKTG--------- 495 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 S+ L++ GK + D + L VDVI PI+HG GEDG++QG L Sbjct: 496 ----------SSLELSEETGK---TIFDPEIAGKLSKVDVILPILHGPYGEDGAMQGFLE 542 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT---RANRHNISFAEVESKL 178 P+ G ++ +A M+K +TKR + D G+ + P++ LT A++++ Sbjct: 543 TIGKPYTGPSLVFAAIGMNKVLTKRFMSDLGIPVVPYLPLTLKGWKQDQEKCLAQIKAAF 602 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGND 237 P+FVK + GSS+GV +V + A++ AF D V +E+ G REIE + LG+ Sbjct: 603 SFPMFVKSVHLGSSIGVFEVHDTNELRDAINEAFVRDDDVFIEESRLGCREIEVSFLGDG 662 Query: 238 NPQASTCG--EIVLTSDFYAYDTKYIDEDG--AKVVVPAAIAPEINDKIRAIAVQAYQTL 293 + G E F Y KY A++V ++ E +++ +A + Y+ L Sbjct: 663 SGVFFVAGMHERRGRGGFIDYQEKYGLSGRASAQIVFDVDLSKETREQLLGVAEKIYRLL 722 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G R+D F+ E ++EIN +PG T S + + G ++ +L+ L+R Sbjct: 723 QGKGSCRIDFFVDNEGSFWLSEINPIPGMTTASPFLAAFVRKGWNREQIVHQLVIDGLQR 782 Query: 354 HAADNALKTT 363 L +T Sbjct: 783 FDQRQRLIST 792 >emb|CAC84690.1| (AJ306727) D-Ala:D-Lac ligase [Enterococcus faecium] Length = 289 Score = 347 bits (891), Expect = 1e-94 Identities = 102/305 (33%), Positives = 164/305 (53%), Gaps = 21/305 (6%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I ID +FD +GI K G W + Sbjct: 1 MNRIKVAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGM 119 AD + P + H L+ + + +DV FP++HG GEDG++QG+ Sbjct: 61 AD----------SLPAILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGL 110 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 111 FVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPE------AGALT 164 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN-DN 238 P+FVKPA GSS GV+KV E+ A++ A ++D K+++EQ I G E+ CAV+GN D+ Sbjct: 165 YPVFVKPARSGSSFGVTKVNGTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDD 224 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L+ + + E G++ + VPA I E +++ A + Y+ LGC Sbjct: 225 LIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERKRVQETAKKVYRVLGC 284 Query: 296 AGMAR 300 G+AR Sbjct: 285 RGLAR 289 >ref|NP_245081.1| (NC_002663) DdlB [Pasteurella multocida] sp|P57819|DDL_PASMU D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAK02228.1| (AE006049) DdlB [Pasteurella multocida] Length = 309 Score = 347 bits (890), Expect = 1e-94 Identities = 109/352 (30%), Positives = 177/352 (49%), Gaps = 47/352 (13%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 +++ ++ ++ GG SAE EVSL S + +++A+ + FD + Sbjct: 5 LKQEKIAVLLGGTSAEREVSLDSGQAVLNALLSAGFDAHPI------------------- 45 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 P +A + D +F I+HG GEDG++QG+L Sbjct: 46 ---------DPKTFPVATLKE---------------QGFDRVFNILHGRGGEDGTMQGLL 81 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 +P+ G V+ SA MDK TK L + GL +A +T+AN ++ + V KLGL Sbjct: 82 EQIGIPYTGCGVMTSALTMDKMRTKMLWKAFGLPVAEMEIVTKANVGELNPSAVVEKLGL 141 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+ VKP+ +GSSVG++KV E AVD A ++D V++E+ + G E VL N+ Sbjct: 142 PVMVKPSLEGSSVGLTKVKRVEDLKSAVDFALKYDDTVLIEEWLSGAEFTVPVLDNE--- 198 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 IV +FY Y+ KYI D + P+ ++ E D+++ + QAY +GC G +R Sbjct: 199 VLPSIRIVPEGEFYDYEAKYI-SDNTQYFCPSGLSAEREDELKQLVKQAYDVVGCRGWSR 257 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 +DV L + + E+NT PG T+ S++PK G + L+ +++EL+ E Sbjct: 258 IDVMLDGNDAFRLVEVNTNPGMTSHSLFPKSAATVGYSFEQLVVKILELSAE 309 >ref|NP_225100.1| (NC_000922) Muramate-Ala Ligase & D-Ala-D-Ala Ligase [Chlamydophila pneumoniae CWL029] ref|NP_300962.1| (NC_002491) muramate-Ala ligase/D-Ala-D-Ala ligase [Chlamydophila pneumoniae J138] ref|NP_445498.1| (NC_002179) UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase [Chlamydophila pneumoniae AR39] sp|Q9Z701|MUDD_CHLPN MURC/DDL BIFUNCTIONAL ENZYME [INCLUDES: UDP-N-ACETYLMURAMATE--ALANINE LIGASE (UDP-N-ACETYLMURAMOYL-L-ALANINE SYNTHETASE); D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE)] pir||D72022 UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase CP0961 [imported] - Chlamydophila pneumoniae (strains CWL029 and AR39) gb|AAD19043.1| (AE001670) Muramate-Ala Ligase & D-Ala-D-Ala Ligase [Chlamydophila pneumoniae CWL029] gb|AAF38741.1| (AE002254) UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase [Chlamydophila pneumoniae AR39] dbj|BAA99113.1| (AP002548) muramate-Ala ligase/D-Ala-D-Ala ligase [Chlamydophila pneumoniae J138] Length = 809 Score = 343 bits (881), Expect = 2e-93 Identities = 101/368 (27%), Positives = 169/368 (45%), Gaps = 28/368 (7%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +KL +G+V GGKS EH++SL SA+++ I +DV I++QG W +L+ Sbjct: 450 KKLSIGLVCGGKSCEHDISLLSAQHVSKYISPEFYDVSYFIINRQGLWRTGKDFPHLIEE 509 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 + ++ L VD +FP++HG GEDG++QG Sbjct: 510 T--------------------QGDSPLSSEIASALAKVDCLFPVLHGPFGEDGTIQGFFE 549 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT---RANRHNISFAEVESKL 178 + P+ G + +A MDK +TKR+ G+ + P+ L + + Sbjct: 550 ILGKPYAGPSLSLAATAMDKLLTKRIASAVGVPVVPYQPLNLCFWKRNPELCIQNLIETF 609 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGND 237 P+ VK A+ GSS+G+ V +E+ + AF +D V VE+ G REIE + +G+ Sbjct: 610 SFPMIVKTAHLGSSIGIFLVRDKEELQEKISEAFLYDTDVFVEESRLGSREIEVSCIGHS 669 Query: 238 NPQASTCG--EIVLTSDFYAYDTKYIDE--DGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 + G E S F Y KY + D AK+ ++ E D +R +A + Y+ + Sbjct: 670 SSWYCMAGPNERCGASGFIDYQEKYGFDGIDCAKISFDLQLSQESLDCVRELAERVYRAM 729 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G AR+D FL E ++E+N +PG T S + + + +G ++ I AL + Sbjct: 730 QGKGSARIDFFLDEEGNYWLSEVNPIPGMTAASPFLQAFVHAGWTQEQIVDHFIIDALHK 789 Query: 354 HAADNALK 361 ++ Sbjct: 790 FDKQQTIE 797 >ref|NP_459135.1| (NC_003197) D-alanine-D-alanine ligase B, affects cell division [Salmonella typhimurium LT2] gb|AAL19094.1| (AE008700) D-alanine-D-alanine ligase B, affects cell division [Salmonella typhimurium LT2] Length = 306 Score = 343 bits (880), Expect = 2e-93 Identities = 106/349 (30%), Positives = 174/349 (49%), Gaps = 50/349 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 ++ ++ GG SAE +VSL S ++ + + + + Sbjct: 4 KIAVLLGGTSAERDVSLNSGAAVLAGLREGGINAHPV----------------------- 40 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 P +AQ+ + +F +HG GEDG+LQGML + Sbjct: 41 -----DPQEVDVAQLKAMGFQK---------------VFIALHGRGGEDGTLQGMLELLG 80 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK---LGLP 181 LP+ GS V+ASA MDK +K L + AGL +AP++ LTRA E +++ LGLP Sbjct: 81 LPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSEEQKARISALGLP 140 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 L VKP+ +GSSVG++KV E A+ LAF+ D ++++E+ + G E A++G + Sbjct: 141 LIVKPSREGSSVGMTKVVEENALQGALSLAFQHDDEILIEKWLCGPEFTVAIVGEE---I 197 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 I FY Y+ KY+ D + PA + ++++ +QA++ LGC G R+ Sbjct: 198 LPSIRIQPAGTFYDYEAKYL-SDETQYFCPAGLDASQEAALQSLVLQAWKALGCTGWGRI 256 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 DV L + + + E NT PG T+ S+ P + +G+ ++ L+ R++ELA Sbjct: 257 DVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 >ref|NP_454742.1| (NC_003198) D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica serovar Typhi] emb|CAD01287.1| (AL627265) D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica serovar Typhi] Length = 306 Score = 343 bits (880), Expect = 2e-93 Identities = 107/349 (30%), Positives = 174/349 (49%), Gaps = 50/349 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 ++ ++ GG SAE +VSL S ++ + + D + Sbjct: 4 KIAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPV----------------------- 40 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 P +AQ+ + +F +HG GEDG+LQGML + Sbjct: 41 -----DPQEVDVAQLKAMGFQK---------------VFIALHGRGGEDGTLQGMLELLG 80 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK---LGLP 181 LP+ GS V+ASA MDK +K L + AGL +AP++ LTRA E +++ LGLP Sbjct: 81 LPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSEEQKARISALGLP 140 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 L VKP+ +GSSVG++KV E A+ LAF+ D ++++E+ + G E A++G + Sbjct: 141 LIVKPSREGSSVGMTKVVEENALQGALSLAFQHDDEILIEKWLCGPEFTVAIVGEE---I 197 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 I FY Y+ KY+ D + PA + ++++ +QA++ LGC G R+ Sbjct: 198 LPSIRIQPAGTFYDYEAKYL-SDETQYFCPAGLEASQEAALQSLVLQAWKALGCTGWGRI 256 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 DV L + + + E NT PG T+ S+ P + +G+ ++ L+ R++ELA Sbjct: 257 DVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 >emb|CAC84688.1| (AJ306726) D-Ala:D-Lac ligase [Enterococcus faecium] Length = 289 Score = 343 bits (880), Expect = 2e-93 Identities = 101/305 (33%), Positives = 164/305 (53%), Gaps = 21/305 (6%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I ID +FD +GI K G W + Sbjct: 1 MNRIKVAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGM 119 AD + P + H L+ + + +DV FP++HG GEDG++QG+ Sbjct: 61 AD----------SLPAILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGL 110 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +P+VG D+ +SAAC+DK + L ++AG+ + F + + ++ L Sbjct: 111 FVLSGIPYVGCDIQSSAACVDKSLAYILTKNAGIAVPEFQMIDKGDKPE------AGALT 164 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN-DN 238 P+FVKPA GSS GV+KV E+ A++ A ++D K+++EQ I G E+ CAV+GN D+ Sbjct: 165 YPVFVKPARSGSSFGVTKVNGTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDD 224 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L+ + + E G++ + VPA I E +++ A + Y+ LGC Sbjct: 225 LIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERKRVQETAKKVYRVLGC 284 Query: 296 AGMAR 300 G+AR Sbjct: 285 RGLAR 289 >ref|NP_414634.1| (NC_000913) D-alanine-D-alanine ligase B, affects cell division [Escherichia coli K12] sp|P07862|DDLB_ECOLI D-ALANINE--D-ALANINE LIGASE B (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||CEECDL D-alanine--D-alanine ligase (EC 6.3.2.4) B - Escherichia coli pdb|1IOV| Complex Of D-Ala:d-Ala Ligase With Adp And A Phosphoryl Phosphonate pdb|2DLN| Mol_id: 1; Molecule: D-Alanine--D-Alanine Ligase; Chain: Null; Ec: 6.3.2.4 emb|CAA38869.1| (X55034) D-Ala:D-Ala ligase (Ddl) [Escherichia coli] gb|AAA23672.1| (M14029) ddl cell wall enzyme [Escherichia coli] gb|AAA23815.1| (K02668) D-alanine:D-alanine ligase [Escherichia coli] dbj|BAA01357.1| (D10483) D-alanine-D-alanine ligase [Escherichia coli] gb|AAC73203.1| (AE000118) D-alanine-D-alanine ligase B, affects cell division [Escherichia coli K12] Length = 306 Score = 342 bits (879), Expect = 2e-93 Identities = 109/349 (31%), Positives = 174/349 (49%), Gaps = 50/349 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 ++ ++ GG SAE EVSL S ++ + + D + Sbjct: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV----------------------- 40 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 P + Q+ + +F +HG GEDG+LQGML + Sbjct: 41 -----DPKEVDVTQLKSMGFQK---------------VFIALHGRGGEDGTLQGMLELMG 80 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK---LGLP 181 LP+ GS V+ASA MDK +K L + AGL +AP++ LTRA + ++ LGLP Sbjct: 81 LPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLP 140 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 + VKP+ +GSSVG+SKV +E A+ LAF+ D +V++E+ + G E A+LG + Sbjct: 141 VIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE---I 197 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 I + FY Y+ KY+ D + PA + ++A+ ++A+ TLGC G R+ Sbjct: 198 LPSIRIQPSGTFYDYEAKYL-SDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRI 256 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 DV L + + + E NT PG T+ S+ P + +G+ ++ L+ R++ELA Sbjct: 257 DVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 >ref|NP_285788.1| (NC_002655) D-alanine-D-alanine ligase B, affects cell division [Escherichia coli O157:H7 EDL933] ref|NP_308123.1| (NC_002695) D-alanine-D-alanine ligase B [Escherichia coli O157:H7] gb|AAG54396.1|AE005186_2 (AE005186) D-alanine-D-alanine ligase B, affects cell division [Escherichia coli O157:H7 EDL933] dbj|BAB33519.1| (AP002550) D-alanine-D-alanine ligase B [Escherichia coli O157:H7] Length = 306 Score = 340 bits (874), Expect = 8e-93 Identities = 108/349 (30%), Positives = 173/349 (48%), Gaps = 50/349 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 ++ ++ GG SAE EVSL S ++ + + D + Sbjct: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV----------------------- 40 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 P + Q+ + +F +HG GEDG+LQGML + Sbjct: 41 -----DPKEVDVTQLKSMGFQK---------------VFIALHGRGGEDGTLQGMLELMG 80 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK---LGLP 181 LP+ GS V+ASA MDK +K L + AGL +AP++ LTR + ++ LGLP Sbjct: 81 LPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRVEFEKGLSDKQLAEISALGLP 140 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 + VKP+ +GSSVG+SKV +E A+ LAF+ D +V++E+ + G E A+LG + Sbjct: 141 VIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE---I 197 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 I + FY Y+ KY+ D + PA + ++A+ ++A+ TLGC G R+ Sbjct: 198 LPSVRIQPSGTFYDYEAKYL-SDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRI 256 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 DV L + + + E NT PG T+ S+ P + +G+ ++ L+ R++ELA Sbjct: 257 DVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 >pdb|1IOW| Complex Of Y216f D-Ala:d-Ala Ligase With Adp And A Phosphoryl Phosphinate Length = 306 Score = 340 bits (872), Expect = 1e-92 Identities = 108/349 (30%), Positives = 174/349 (48%), Gaps = 50/349 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 ++ ++ GG SAE EVSL S ++ + + D + Sbjct: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV----------------------- 40 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 P + Q+ + +F +HG GEDG+LQGML + Sbjct: 41 -----DPKEVDVTQLKSMGFQK---------------VFIALHGRGGEDGTLQGMLELMG 80 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK---LGLP 181 LP+ GS V+ASA MDK +K L + AGL +AP++ LTRA + ++ LGLP Sbjct: 81 LPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLP 140 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 + VKP+ +GSSVG+SKV +E A+ LAF+ D +V++E+ + G E A+LG + Sbjct: 141 VIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE---I 197 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 I + FY Y+ K++ D + PA + ++A+ ++A+ TLGC G R+ Sbjct: 198 LPSIRIQPSGTFYDYEAKFL-SDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRI 256 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 DV L + + + E NT PG T+ S+ P + +G+ ++ L+ R++ELA Sbjct: 257 DVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 >ref|NP_386277.1| (NC_003047) PROBABLE D-ALANINE--D-ALANINE LIGASE B PROTEIN [Sinorhizobium meliloti] emb|CAC46750.1| (AL591789) PROBABLE D-ALANINE--D-ALANINE LIGASE B PROTEIN [Sinorhizobium meliloti] Length = 308 Score = 340 bits (872), Expect = 2e-92 Identities = 106/357 (29%), Positives = 170/357 (46%), Gaps = 60/357 (16%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M V ++ GG S+E VSL S DA++ + V + + + + + Sbjct: 1 MSSKHVAVLLGGFSSERPVSLSSGTACADALEAEGYRVTRVDVGRDVAAVLQE------- 53 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 DV+F +HG GEDG++QG+L Sbjct: 54 ------------------------------------LRPDVVFNALHGPFGEDGTIQGIL 77 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 +P+ S VLASA MDKD K + + AG+ +A + + R + N + + Sbjct: 78 EYLEIPYTHSGVLASALAMDKDQAKHVAKAAGIPVAEALVMDRRSFGN------QHPMKP 131 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAV--DLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 P VKP +GSS GV V ++ + V + + +V+VE+ I GRE C V+G+ Sbjct: 132 PYVVKPVREGSSFGVVIVKEDQSHPPQVITSSEWRYGDRVMVERYIAGREFTCGVMGD-- 189 Query: 239 PQASTCGEIVLT-SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 A EI+ FY YD+KY+ + G+K V+PA I+P I KI+ +A++A+Q +GC G Sbjct: 190 -VALGVTEIIPQGHAFYDYDSKYV-KGGSKHVIPAQISPNIYQKIQTLALKAHQAIGCRG 247 Query: 298 MARVDVFLTP----ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 ++R D E E++ EINT PG T S+ P++ Q +GL + + + ++E A Sbjct: 248 VSRSDFRFDDRGDGEGELIWLEINTQPGMTPTSLVPEMAQHAGLQFGEFLRWMVEDA 304 >ref|NP_404198.1| (NC_003143) D-alanine--D-alanine ligase B [Yersinia pestis] emb|CAC89413.1| (AJ414143) D-alanine--D-alanine ligase B [Yersinia pestis] Length = 306 Score = 334 bits (856), Expect = 1e-90 Identities = 111/349 (31%), Positives = 170/349 (47%), Gaps = 50/349 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 +V ++ GG SAE EVSL S + ++ + ++ D + D Sbjct: 4 KVAVLLGGTSAEREVSLLSGQAVLAGLKEAGIDAYGVD------------------TKDF 45 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 L+ D +F +HG GEDG+LQG+L Sbjct: 46 PVTQLKEQG-------------------------FDKVFIALHGRGGEDGTLQGVLEFLQ 80 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAE---VESKLGLP 181 LP+ GS V+ASA MDK TK + + GL I+P++ L R +S E +KLGLP Sbjct: 81 LPYTGSGVMASALTMDKLRTKLVWQALGLPISPYVALNRQQFETLSPEELVACVAKLGLP 140 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 L VKP+++GSSVG+SKV + A+ AF+ D V++E+ + G E A+LG++ Sbjct: 141 LIVKPSHEGSSVGMSKVDHASELQKALVEAFQHDSDVLIEKWLSGPEFTVAILGDE---V 197 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 I FY YD KY+ D + P+ ++ E ++ A+A+QAY L C+G RV Sbjct: 198 LPSIRIQPPGVFYDYDAKYL-SDKTQYFCPSGLSDESEQQLAALALQAYHALDCSGWGRV 256 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 DV + + E+NT PG T+ S+ P + GL ++ L+ R++ LA Sbjct: 257 DVMQDRDGHFYLLEVNTSPGMTSHSLVPMAARQYGLSFSQLVARILMLA 305 >ref|NP_212334.1| (NC_001318) D-alanine--D-alanine ligase (ddlA) [Borrelia burgdorferi] sp|O51218|DDL_BORBU D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||H70124 D-alanine--D-alanine ligase (ddlA) homolog - Lyme disease spirochete gb|AAC66589.1| (AE001130) D-alanine--D-alanine ligase (ddlA) [Borrelia burgdorferi] Length = 356 Score = 334 bits (856), Expect = 1e-90 Identities = 120/356 (33%), Positives = 197/356 (54%), Gaps = 21/356 (5%) Query: 8 IVFGGKSAEHEVSLQSAKNIVDA-IDKSRFDVVLLGIDK-QGQWHVSDASNYLLNADDPA 65 ++FGG S EHE+S +SA +I A +D +++++ + IDK G W++ D+ + P Sbjct: 2 LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSD---PPKPI 58 Query: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 + + P + L N + L +DV+FP+VHG GEDG++QG+L+V ++ Sbjct: 59 NTDVLPIVSLL--------PGFGIFSNNKNL-EIDVVFPVVHGRTGEDGAIQGVLKVMDI 109 Query: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN---RHNISFAEVESKLGLPL 182 P VG+ ++ SA +K K LL+ + + PFI + + V+ LG P+ Sbjct: 110 PCVGAGIIGSAISSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEVLGYPV 169 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 VKPA GSS+G++ SE Q + A ++D +++E+ I+ REIEC+++GN+ + Sbjct: 170 IVKPAVLGSSIGINVAYSENQIESFIKEALKYDLTIVIEKFIEAREIECSIIGNEKMKIF 229 Query: 243 TCGEIVLTS-DFYAYDTKY--IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 + GE+V+ FY YD KY I + +PA + I+ A Y+ L GMA Sbjct: 230 SPGEVVVQDFIFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLTYKNLELRGMA 289 Query: 300 RVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 RVD F+ + + +NEINT+PGFT+ISM+ K+ GL + DL+ LI+ A + + Sbjct: 290 RVDFFVEKKSGTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYAFQSY 345 >ref|NP_103112.1| (NC_002678) D-alanyl-D-alanine ligase [Mesorhizobium loti] dbj|BAB48898.1| (AP002997) D-alanyl-D-alanine ligase [Mesorhizobium loti] Length = 308 Score = 329 bits (844), Expect = 3e-89 Identities = 103/356 (28%), Positives = 169/356 (46%), Gaps = 58/356 (16%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+ V ++ GG S+E VSL S K DA++ + V + + + Sbjct: 1 MKSKHVAVLLGGFSSERPVSLSSGKACADALENEGYQVTRVDVGRD-------------- 46 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + LA++ DV F +HG GEDG++QG+L Sbjct: 47 -----------VGSVLAELKP------------------DVAFNALHGPFGEDGTIQGIL 77 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 +P+ S VLASA M+K+ K++++ G+ +A R N + + Sbjct: 78 EYLGIPYTHSGVLASALAMNKEQAKKIVKTVGVPVAESKVANRFAIQN------KHPMKP 131 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAV--DLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 P +KP N+GSS GV V+ + + V +++ V+VE+ I GRE+ CAV+G+ Sbjct: 132 PYVIKPVNEGSSFGVVIVSEGQSHPPQVVGSSEWKYGDTVMVERYIHGRELTCAVMGD-- 189 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 C I FY YD+KY+ G+K PA ++P I KI+ +A++A+Q +GC G+ Sbjct: 190 VALGVCEIIPTGHSFYDYDSKYV-AGGSKHECPAKVSPNIYQKIQTLALKAHQAVGCRGV 248 Query: 299 ARVDVFLT----PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 +R D EVV E+NT PG T S+ P++ +G + +L++ ++E A Sbjct: 249 SRSDFRYDDRHSENGEVVWLEVNTQPGMTPTSLVPEIAAHAGHSFGELLSWMVEDA 304 >ref|NP_252890.1| (NC_002516) D-alanine-D-alanine ligase A [Pseudomonas aeruginosa] pir||E83121 D-alanine-D-alanine ligase A PA4201 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG07588.1|AE004836_7 (AE004836) D-alanine-D-alanine ligase A [Pseudomonas aeruginosa] Length = 346 Score = 324 bits (831), Expect = 8e-88 Identities = 119/362 (32%), Positives = 188/362 (51%), Gaps = 32/362 (8%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +KL+V ++FGG S E +VS+ S ++ A+ + V+ + D ++ LL A Sbjct: 4 DKLKVAVLFGGSSEERDVSIASGAQVIQALRSAGHQVLAV-----------DTASGLLGA 52 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ------PLPTVDVIFPIVHGTLGEDGS 115 ++ R A+ + +VP + I Q L VDV F +HG GEDG+ Sbjct: 53 EEER----RLLASKVKEVPPDSDSLAIIRSGKQSLLSAGELAGVDVFFLALHGGTGEDGT 108 Query: 116 LQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVE 175 LQ +L + GS LASA MDKDV KRL AG+ A ++ S EV Sbjct: 109 LQALLDAGGFAYTGSGHLASAMAMDKDVAKRLFLAAGVETASWLM------APASEEEVR 162 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 +LG PL VKP +QGS+VG+S V S+ + A++LA + +V++E+ + GRE+ VL Sbjct: 163 EQLGFPLVVKPNSQGSTVGLSIVHSQAELQPAIELAGRYGDEVMLERFVAGREVTVGVL- 221 Query: 236 NDNPQASTCGEIVL-TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 + QA GEI+L + + Y+ KY + V PA + P I + + +A++ ++ L Sbjct: 222 --DDQALPVGEILLGGQEVFDYEHKY-QAGAVREVFPADLPPAIAAEAQRLALKVHRALK 278 Query: 295 CAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 +G +R D L + + E+NTLPG T S+ P+ A+G+G+ +L R+ L +ER Sbjct: 279 LSGYSRTDFRLDEQGRLWCLEVNTLPGMTATSLLPQAAAAAGIGFAELCERICRLGIERC 338 Query: 355 AA 356 Sbjct: 339 KG 340 >ref|NP_253100.1| (NC_002516) D-alanine--D-alanine ligase [Pseudomonas aeruginosa] pir||C83094 D-alanine--D-alanine ligase PA4410 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAF26456.1| (U19797) D-alanine:D-alanine ligase B [Pseudomonas aeruginosa] gb|AAG07798.1|AE004856_9 (AE004856) D-alanine--D-alanine ligase [Pseudomonas aeruginosa] Length = 319 Score = 322 bits (827), Expect = 3e-87 Identities = 104/348 (29%), Positives = 157/348 (44%), Gaps = 51/348 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 RV ++FGGKSAE EVSL+S ++ ++ + D + + + + + Sbjct: 20 RVAVLFGGKSAEREVSLKSGAMVLQSLLAAGVDAFGIDVGEDLLQRLVE----------- 68 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 +D F I+HG GEDGS+QG+L A Sbjct: 69 --------------------------------EKIDRAFIILHGRGGEDGSMQGLLECAG 96 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ GS VLASA MDK TKR+ GL + L + E +LG PL V Sbjct: 97 IPYTGSGVLASALAMDKLRTKRVWLSLGLPTPDYAVLASED----DCREAAQRLGFPLIV 152 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KPA++GSS+G++KV ++ A A +D +V+VEQ I G E A L Q Sbjct: 153 KPAHEGSSIGMAKVGGLDELIAAWREAARYDSQVLVEQWISGPEFTVATL---RGQVLPA 209 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 + FY YD KY+ D + VP + +++ + +A LG G R DV Sbjct: 210 IRLGTPHTFYDYDAKYLASD-TRYQVPCGLDEAKERELKELTARACDALGIQGWGRADVM 268 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 E + E+NT PG T+ S+ P +A+GL + L+ ++ + E Sbjct: 269 QDAEGRFWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADSRE 316 >ref|NP_520963.1| (NC_003295) PROBABLE D-ALANINE--D-ALANINE LIGASE B PROTEIN [Ralstonia solanacearum] emb|CAD16549.1| (AL646072) PROBABLE D-ALANINE--D-ALANINE LIGASE B PROTEIN [Ralstonia solanacearum] Length = 331 Score = 317 bits (812), Expect = 1e-85 Identities = 112/348 (32%), Positives = 166/348 (47%), Gaps = 50/348 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 +VG++ GG+SAE E+SL S ++ A+ D Sbjct: 19 KVGVILGGRSAEREISLLSGNGVLAALRSRGVDAHPF----------------------- 55 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 P +A + + H+++ + +HG GEDG++QG+L Sbjct: 56 -----DPGTQPVAGLAAQGFHRVVIS---------------LHGRFGEDGTIQGLLEQFG 95 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ GS VLASA MDK+ TKRL + L F+ L + V +LGLPL V Sbjct: 96 IPYTGSGVLASALAMDKEATKRLWQTHSLPTPDFVMLHAG----ADWQAVADRLGLPLIV 151 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN-DNPQAST 243 KPA +GSS+G++KVTS + A + A D V+ EQ I G E+ CAV+G ++ A Sbjct: 152 KPAREGSSIGLTKVTSVAELPAAYEKAARLDRDVMAEQFIDGDELTCAVIGEGEHATALP 211 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 IV Y Y KY +D + PA I E +++A+ VQAY++LGC G R D+ Sbjct: 212 LIRIVAPQANYDYQHKYFTDD-TRYECPAPIPAEAAARVQALVVQAYRSLGCRGWGRADI 270 Query: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 L + + E+NT PG T S+ P +A G+ Y D + +L A Sbjct: 271 MLRKHDGAPFLLEMNTSPGMTGHSLVPMAARAVGISYEDFVLQLAATA 318 >ref|NP_232962.1| (NC_002506) D-alanine--D-alanine ligase [Vibrio cholerae] pir||A82443 D-alanine--D-alanine ligase VCA0572 [imported] - Vibrio cholerae (group O1 strain N16961) gb|AAF96474.1| (AE004388) D-alanine--D-alanine ligase [Vibrio cholerae] Length = 334 Score = 314 bits (805), Expect = 1e-84 Identities = 105/351 (29%), Positives = 180/351 (50%), Gaps = 29/351 (8%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKS-RFDVVLLGIDKQGQWHVSDASNYLL 59 M K + ++ GG S+EHE+SL SA I ++ + F V+ + + K+G + Sbjct: 1 MTKTTILLLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWF---------- 50 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 ++ A + L ++ +L + +D + P +HG GE G +Q M Sbjct: 51 -SEQGALVYLDTNSATLNSDKASY--------------PIDFVVPCIHGFPGETGDIQSM 95 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L +A +P++G ASA +K +K + P++ LT+ +I A+ Sbjct: 96 LELAGIPYLGCGPEASANSFNKITSKLWYDALDIPNTPYLFLTQNTPSSIDKAKQAFGHW 155 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG-NDN 238 +FVK A QGSSVG KVT+E+Q A A++ AF F +V+VEQ +K RE+E + N Sbjct: 156 GSIFVKAARQGSSVGCYKVTTEDQIAPAIEAAFGFSEQVLVEQAVKPRELEVSAYEMNGK 215 Query: 239 PQASTCGEIV-LTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDK-IRAIAVQAYQTLGCA 296 S GE++ FY+Y+ KY A+ V+ A E + + I+ A + + + Sbjct: 216 LYISKPGEVIAPEGTFYSYEEKYSANSHARTVLEAENLTEKHKELIQTYAERVFIHMKLR 275 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 ++R+D FLT E ++ +NE+NT PG T ISM+PK+ + +G +++ + + + Sbjct: 276 HLSRIDFFLTQEGQIYLNEVNTFPGMTPISMFPKMLEHNGHRFSEFLVQCV 326 >ref|NP_355054.1| (NC_003062) AGR_C_3788p [Agrobacterium tumefaciens] [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAK87839.1| (AE008125) AGR_C_3788p [Agrobacterium tumefaciens str. C58 (Cereon)] Length = 334 Score = 313 bits (803), Expect = 1e-84 Identities = 105/357 (29%), Positives = 166/357 (46%), Gaps = 60/357 (16%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M V ++ GG S+E VSL S A++ + V + + + + + Sbjct: 27 MGGKHVAVLLGGFSSERPVSLSSGNACALALEGEGYKVTRVDVGRDVAAVLDE------- 79 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 DV F +HG GEDG++QG+L Sbjct: 80 ------------------------------------LRPDVAFNALHGPFGEDGTIQGIL 103 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 +P+ S VLASA MDK K++ AG+ +A + R + + E L Sbjct: 104 EYLAIPYTHSGVLASALAMDKAQAKKVAAAAGIPVAGERVMNRFDFTS------EHPLQP 157 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAV--DLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 P VKP +GSS GV V ++ + + + F ++V+VE+ I GRE+ C VL + Sbjct: 158 PYVVKPVREGSSFGVVIVKEDQSHPPQILTSSEWPFGNQVMVERYIHGRELTCGVL---D 214 Query: 239 PQASTCGEIVL-TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 +A E+V +FY YD KY G+K V+PA I+P+I KI+ +AV A+Q +GC G Sbjct: 215 GEALGVTEVVPLGHNFYDYDAKY-AAGGSKHVIPAGISPKIYQKIQTLAVMAHQAIGCRG 273 Query: 298 MARVDVFLT----PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 ++R D + EV+ E+NT PG T S+ P++ +G + DL++ ++E A Sbjct: 274 VSRSDFRYDDRFSEDGEVIWLEVNTQPGMTPTSLVPEMAAHAGRSFGDLVSWMVEDA 330 >ref|NP_532764.1| (NC_003304) D-alanine:D-alanine ligase [Agrobacterium tumefaciens str. C58 (U. Washington)] gb|AAL43080.1| (AE009159) D-alanine:D-alanine ligase [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 308 Score = 312 bits (800), Expect = 4e-84 Identities = 105/357 (29%), Positives = 166/357 (46%), Gaps = 60/357 (16%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M V ++ GG S+E VSL S A++ + V + + + + + Sbjct: 1 MGGKHVAVLLGGFSSERPVSLSSGNACALALEGEGYKVTRVDVGRDVAAVLDE------- 53 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 DV F +HG GEDG++QG+L Sbjct: 54 ------------------------------------LRPDVAFNALHGPFGEDGTIQGIL 77 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 +P+ S VLASA MDK K++ AG+ +A + R + + E L Sbjct: 78 EYLAIPYTHSGVLASALAMDKAQAKKVAAAAGIPVAGERVMNRFDFTS------EHPLQP 131 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAV--DLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 P VKP +GSS GV V ++ + + + F ++V+VE+ I GRE+ C VL + Sbjct: 132 PYVVKPVREGSSFGVVIVKEDQSHPPQILTSSEWPFGNQVMVERYIHGRELTCGVL---D 188 Query: 239 PQASTCGEIVL-TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 +A E+V +FY YD KY G+K V+PA I+P+I KI+ +AV A+Q +GC G Sbjct: 189 GEALGVTEVVPLGHNFYDYDAKY-AAGGSKHVIPAGISPKIYQKIQTLAVMAHQAIGCRG 247 Query: 298 MARVDVFLT----PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 ++R D + EV+ E+NT PG T S+ P++ +G + DL++ ++E A Sbjct: 248 VSRSDFRYDDRFSEDGEVIWLEVNTQPGMTPTSLVPEMAAHAGRSFGDLVSWMVEDA 304 >gb|AAB62175.1| (U94527) vancomycin resistance protein B [Enterococcus faecium] Length = 267 Score = 311 bits (798), Expect = 6e-84 Identities = 92/283 (32%), Positives = 152/283 (53%), Gaps = 21/283 (7%) Query: 35 RFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ 94 +FD +GI K G W + AD + P + H L+ + + Sbjct: 1 KFDPHYIGITKNGVWKLCKKPCTEWEAD----------SLPAIFSPDRKTHGLLVMKERE 50 Query: 95 -PLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGL 153 +DV FP++HG GEDG++QG+ ++ +P+VG D+ +SAACMDK + L ++AG+ Sbjct: 51 YETRRIDVAFPVLHGKCGEDGAIQGLFELSGIPYVGCDIQSSAACMDKSLAYILTKNAGI 110 Query: 154 NIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFE 213 + F + + ++ L P+FVKPA GSS GV+KV S E+ A++ A + Sbjct: 111 AVPEFQMIEKGDKPE------ARTLTYPVFVKPARSGSSFGVTKVNSTEELNAAIEAAGQ 164 Query: 214 FDHKVIVEQGIKGREIECAVLGN-DNPQASTCGEIVLTSDFYAYDTKYIDEDGAK---VV 269 +D K+++EQ I G E+ CAV+GN D+ +I L+ + + E G++ ++ Sbjct: 165 YDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMII 224 Query: 270 VPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVV 312 VPA I E ++++ A + Y+ LGC G+ARVD+FL + +V Sbjct: 225 VPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFLQEDGGIV 267 >pir||T51694 D-alanine--D-alanine ligase (EC 6.3.2.4) [imported] - Prochlorococcus sp. (fragment) emb|CAB56200.1| (AJ011025) D-alanine-D-alanine ligase [Prochlorococcus sp.] Length = 310 Score = 309 bits (791), Expect = 4e-83 Identities = 110/317 (34%), Positives = 182/317 (56%), Gaps = 17/317 (5%) Query: 40 LLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTV 99 L ++K G W +D S LL + QV K E I+ N + Sbjct: 2 LFIVNKHGVWLDNDQSLVLLKEKR------KNETIDKNQVFPKRE---INFLNTIEFQGI 52 Query: 100 DVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFI 159 D+ FP++HG GEDG++ G+L+ P VG +L SA MDK + K++ + ++ Sbjct: 53 DIWFPLLHGVNGEDGAIHGLLKFTQKPIVGGGILGSALGMDKILMKKIFSHLEIPQVNYL 112 Query: 160 TLTRANRHNISFA-----EVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEF 214 + + + E+ KL LP+FVKPAN GSS+G+SK + + A+ A+E Sbjct: 113 DIQNQDLSDDKVKNNLSVEIIEKLKLPVFVKPANSGSSLGISKAKTRSEIIKALQKAWEI 172 Query: 215 DHKVIVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAI 274 D ++++E+G+ RE+EC ++GN AS GE+ ++D+Y YD+KY ++ ++++PA I Sbjct: 173 DSRIVIEEGLDVRELECGIIGNLKLTASEIGEVSYSTDWYDYDSKYSMDN--QIIIPADI 230 Query: 275 APEINDKIRAIAVQAYQTLGCAGMARVDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQ 333 +I+++I+ IA+++ + L G ARVD FL N++ +NEINT+PGFT+ SM+P LW Sbjct: 231 DSQISEQIKDIAIRSCRALNIYGFARVDFFLEKISNKIFLNEINTIPGFTSKSMFPMLWN 290 Query: 334 ASGLGYTDLITRLIELA 350 ASGL L+ +L++++ Sbjct: 291 ASGLNIDQLVAKLVDIS 307 >gb|AAB62174.1| (U94526) vancomycin resistance protein B [Enterococcus faecium] Length = 267 Score = 308 bits (789), Expect = 6e-83 Identities = 91/283 (32%), Positives = 150/283 (52%), Gaps = 21/283 (7%) Query: 35 RFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ 94 +FD +GI K G W + AD + P + H L+ + + Sbjct: 1 KFDPHYIGITKNGVWKLCKKPCTEWEAD----------SLPAILSPDRKTHGLLVMKESE 50 Query: 95 -PLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGL 153 +DV FP++HG GEDG++QG+ ++ +P+VG D+ +SAACMDK + L ++AG+ Sbjct: 51 YETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGI 110 Query: 154 NIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFE 213 + F + + ++ L P+FVKPA GSS GV+KV E+ A++ A + Sbjct: 111 AVPEFQMIDKGDKPE------AGALTYPVFVKPARSGSSFGVTKVNGTEELNAAIEAAGQ 164 Query: 214 FDHKVIVEQGIKGREIECAVLGN-DNPQASTCGEIVLTSDFYAYDTKYIDEDGAK---VV 269 +D K+++EQ I G E+ CAV+GN D+ +I L+ + + E G++ + Sbjct: 165 YDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMIT 224 Query: 270 VPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVV 312 VPA I E ++++ A + Y+ LGC G+ARVD+FL + +V Sbjct: 225 VPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFLQEDGGIV 267 >gb|AAB62176.1| (U94528) vancomycin resistance protein B [Enterococcus faecium] gb|AAB62177.1| (U94529) vancomycin resistance protein B [Enterococcus faecium] gb|AAB62178.1| (U94530) vancomycin resistance protein B [Enterococcus faecium] Length = 267 Score = 307 bits (788), Expect = 9e-83 Identities = 91/283 (32%), Positives = 150/283 (52%), Gaps = 21/283 (7%) Query: 35 RFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ 94 +FD +GI K G W + AD + P + H L+ + + Sbjct: 1 KFDPHYIGITKNGVWKLCKKPCTEWEAD----------SLPAILSPDRKTHGLLVMKESE 50 Query: 95 -PLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGL 153 +DV FP++HG GEDG++QG+ ++ +P+VG D+ +SAACMDK + L ++AG+ Sbjct: 51 YETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGI 110 Query: 154 NIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFE 213 + F + + ++ L P+FVKPA GSS GV+KV E+ A++ A + Sbjct: 111 AVPEFQIIDKGDKPE------AGALTYPVFVKPARSGSSFGVTKVNGTEELNAAIEAAGQ 164 Query: 214 FDHKVIVEQGIKGREIECAVLGN-DNPQASTCGEIVLTSDFYAYDTKYIDEDGAK---VV 269 +D K+++EQ I G E+ CAV+GN D+ +I L+ + + E G++ + Sbjct: 165 YDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMIT 224 Query: 270 VPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVV 312 VPA I E ++++ A + Y+ LGC G+ARVD+FL + +V Sbjct: 225 VPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFLQEDGGIV 267 >gb|AAK97387.1|AF363615_1 (AF363615) D-alanine:D-alanine ligase 2 [Enterococcus gallinarum] Length = 343 Score = 304 bits (780), Expect = 7e-82 Identities = 100/354 (28%), Positives = 171/354 (48%), Gaps = 20/354 (5%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLL---- 59 + + ++ GG S E +VSL S I A+++ +LL + QG + S Y + Sbjct: 1 MNIVVLAGGLSHERDVSLSSGGQIAMALEERGHRALLLDL-YQGNNEKTFESAYSIQKQE 59 Query: 60 -NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118 N D + P L Q ++ LI + D F +HG +GE+G LQ Sbjct: 60 ENPYDYFVVENEPDIEKLIQ-KNSNQKNLIGKNVVELCLNADFCFIALHGGIGENGKLQA 118 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 + + + GS S MDKD+ K+L++ + + + E Sbjct: 119 FFDIYGIRYSGSHYKGSLLAMDKDIAKQLMKLNDIPTPKW---------QLWEQGQEVYY 169 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 P VKP + GSS+GV V ++EQ+ A+ A +++ KV++EQ I+GRE VLG++ Sbjct: 170 STPCVVKPIDNGSSIGVEIVENKEQFFKALKKAEKYNSKVMIEQKIEGREFSVGVLGDN- 228 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 EI+ FY Y+ KY + + + PA I+ ++ ++ + V + LG + Sbjct: 229 --VLPAIEIIPQQGFYNYENKY-QKGATEEITPADISSDLATRLSEMTVLVNKVLGLSIY 285 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 +RVD +T E ++ E N+LPG T S+ P+ +A G+ +++L ++EL+LE Sbjct: 286 SRVDYIVTKELDIYCIEANSLPGMTPTSLLPQEAEAIGISFSELCETIVELSLE 339 >gb|AAB49636.1| (U72704) vancomycin resistance protein [Enterococcus faecalis] Length = 261 Score = 304 bits (779), Expect = 1e-81 Identities = 88/277 (31%), Positives = 147/277 (52%), Gaps = 21/277 (7%) Query: 34 SRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNG 93 +FD +GI K+G W + AD + P + H L+ + Sbjct: 1 EKFDPHYIGITKRGVWKLCKKPCTEWEAD----------SLPAILSPDRKTHGLLVMKES 50 Query: 94 Q-PLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAG 152 + +DV FP++HG GEDG++QG+ ++ +P+VG D+ +SAACMDK + L ++AG Sbjct: 51 EYETRRIDVAFPVLHGKCGEDGAIQGLFELSGIPYVGCDIQSSAACMDKSLAYILTKNAG 110 Query: 153 LNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAF 212 + + F + + ++ L P+FVKPA GSS G++KV E+ A++ A Sbjct: 111 IAVPEFQMIDKGDKPET------GALTYPVFVKPARSGSSFGLTKVNGTEELNAAIEAAG 164 Query: 213 EFDHKVIVEQGIKGREIECAVLGN-DNPQASTCGEIVLTSDFYAYDTKYIDEDGAK---V 268 ++D K+++EQ I G E+ CAV+GN D+ +I L+ + + E G++ + Sbjct: 165 QYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMI 224 Query: 269 VVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFL 305 VPA I ++++ A + Y+ LGC G+ARVD+FL Sbjct: 225 TVPADIPVGERNRVQETAKKVYRALGCRGLARVDLFL 261 >ref|NP_242487.1| (NC_002570) D-alanyl-D-alanine ligase A [Bacillus halodurans] dbj|BAB05340.1| (AP001512) D-alanyl-D-alanine ligase A [Bacillus halodurans] Length = 305 Score = 302 bits (774), Expect = 4e-81 Identities = 100/352 (28%), Positives = 169/352 (47%), Gaps = 49/352 (13%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ +++GG SAE EVSL S K I++A+ + +V+ + Sbjct: 1 MKIAVLYGGTSAEREVSLSSGKGIMEALKANGHEVIGIDFHPDQV--------------- 45 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 VD++F +HG LGEDG +Q +L + Sbjct: 46 ----------------------------RDLVDLDVDLVFIGLHGRLGEDGKVQALLDLL 77 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 N+P+VG+ V SA MDK K AG+ +A + L + P+ Sbjct: 78 NIPYVGTGVQGSALAMDKAKAKLFFEKAGIRVAEEVVL---HSFTYDANAFNFTGTYPVV 134 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-NPQAS 242 VKP +GS++G++ +EE+ ++ AF D +++E+ I G E+ AVLGN ++ Sbjct: 135 VKPNQEGSTIGLTVAETEEELLQGIEEAFRHDDTILIEEFIAGTEVTVAVLGNKGEERSL 194 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 EIV + Y Y++KY ++ +VPA I+ E ++ AV+A+Q LGC +RVD Sbjct: 195 PVVEIVPKNKLYDYESKYAPGM-SEHIVPARISEEHTAYVQQAAVRAHQALGCDVYSRVD 253 Query: 303 VFLTPEN-EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 + + + VI ++NTLPG T S+YP + G+ Y ++I + L+L++ Sbjct: 254 FIVPNDGSDPVILKVNTLPGMTPTSLYPDAAKGVGMSYEEMIQTFVNLSLKK 305 >gb|AAD53933.1|AF179611_17 (AF179611) D-alanine:D-alanine ligase [Zymomonas mobilis] Length = 321 Score = 300 bits (769), Expect = 1e-80 Identities = 103/370 (27%), Positives = 175/370 (46%), Gaps = 63/370 (17%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +K V ++ GG S+E E+SL S +++ A++++ + V LL +D+ + + +A Sbjct: 3 DKKHVVVLMGGWSSEREISLLSGRHVGKALEEAGYRVTLLDMDRDIAFKLREA------- 55 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 DV+F +HGT GEDGS+QG++ Sbjct: 56 ------------------------------------KPDVVFNALHGTPGEDGSIQGLMD 79 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 + + + S + ASA +DK++TK++L + + + R + + L P Sbjct: 80 LMAIRYTHSGLTASAIAIDKELTKKILTPENIPMPQGCLVERESLYTKD------PLPRP 133 Query: 182 LFVKPANQGSSVGVSKVTSE--EQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGND 237 +KP N+GSSVGV+ + + I D + + ++ E IKGRE+ AV+G+ Sbjct: 134 YVLKPVNEGSSVGVAIIDESFNDGQPIRKDQIDPWKNFKTLLAEPFIKGRELTVAVMGD- 192 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 +A E+ + FY Y KY D + PA I EI +K A++++A+Q LGC G Sbjct: 193 --KALAVTELCPNNGFYDYKAKYTDGM-TTHICPAKIPAEIAEKAMALSLKAHQLLGCRG 249 Query: 298 MARVDVFLTPE---NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 +R D E + + + E+NT PG T +S+ P+ + G+ Y L ++E AL Sbjct: 250 PSRSDFRWDDEAGLDGLFLLEVNTQPGMTPLSLVPEQAKQLGIDYVALCRMIVEEAL--- 306 Query: 355 AADNALKTTM 364 A D +T M Sbjct: 307 AEDTLQETKM 316 >ref|NP_359970.1| (NC_003103) D-alanine--D-alanine ligase [EC:6.3.2.4] [Rickettsia conorii] gb|AAL02871.1| (AE008598) D-alanine--D-alanine ligase [EC:6.3.2.4] [Rickettsia conorii] Length = 321 Score = 296 bits (758), Expect = 2e-79 Identities = 99/350 (28%), Positives = 167/350 (47%), Gaps = 56/350 (16%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + ++ GG SAE EVSL S++ + A+ + + V + + + + Sbjct: 22 KKHIALMAGGMSAEREVSLVSSEGVSKALIELGYRVTFIDMGADIAVRLQE--------- 72 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D++F +HGT GEDG L G+L + Sbjct: 73 ----------------------------------IKPDIVFNCLHGTYGEDGCLPGLLNI 98 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+ S VL+SA DK ++ +N+A I + +++ + P Sbjct: 99 MRIPYTHSGVLSSALAFDKIHSRIWFLTNNINMAEGIVVNKSDNIK------NDPMKRPY 152 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 +KP QGSS+GV + +E+ + A D F + +VI+EQ IKGRE++ AVL N +A Sbjct: 153 VIKPLTQGSSIGVEVIFAEDDFNFA-DYDFPYGDQVIIEQYIKGRELQVAVL---NGKAL 208 Query: 243 TCGEI-VLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 EI +L + FY Y+TKY E A + PA + + +K+ + + Y+T+ C G AR Sbjct: 209 GALEIKLLKNRFYDYETKYT-EGFADHLCPAPLPANLYEKLLIESEKIYKTMNCKGPARA 267 Query: 302 DVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + L + N++ EINT PG +S+ P++ +G+ +T+LI +I+ A Sbjct: 268 EFILEEQTNKLYALEINTHPGMMPLSIVPEIAAYAGINFTNLIEEIIKTA 317 >emb|CAA55651.1| (X79049) vanA2 [Oerskovia turbata] Length = 261 Score = 294 bits (753), Expect = 1e-78 Identities = 90/276 (32%), Positives = 142/276 (50%), Gaps = 20/276 (7%) Query: 45 KQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIF 103 K G W + + D+ S P K H L+ +N + + VDV F Sbjct: 1 KSGVWKMCEKPCAEWENDN---------CYSAVLSPDKKMHGLLVKKNHEYEINHVDVAF 51 Query: 104 PIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR 163 +HG GEDGS+QG+ ++ +PFVG D+ +SA CMDK +T + ++AG+ F + + Sbjct: 52 SALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVINK 111 Query: 164 ANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQG 223 +R V + P+F KPA GSS GV KV S ++ A++ A ++D K+++EQ Sbjct: 112 DDRP------VAATSTYPVFGKPARSGSSFGVKKVNSADELDYAIESARQYDSKILIEQA 165 Query: 224 IKGREIECAVLGND-NPQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEIN 279 + G E+ CAVLGN +I L + + E G++ + VPA ++ E Sbjct: 166 VSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEER 225 Query: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINE 315 +I+ + Y+ LGC G+ARVD+FL +V+NE Sbjct: 226 GRIQETGKKIYKALGCRGLARVDMFLQDNGRIVLNE 261 >ref|NP_284760.1| (NC_003116) D-alanine--D-alanine ligase B [Neisseria meningitidis Z2491] pir||H81776 D-alanine--D-alanine ligase (EC 6.3.2.4) B NMA2060 [imported] - Neisseria meningitidis (group A strain Z2491) emb|CAB85278.1| (AL162758) D-alanine--D-alanine ligase B [Neisseria meningitidis Z2491] Length = 304 Score = 293 bits (752), Expect = 1e-78 Identities = 105/347 (30%), Positives = 155/347 (44%), Gaps = 50/347 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 +V ++ GG S+E E+SL S I++A+ D Sbjct: 6 KVAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAF----------------------- 42 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 P T L+++ + F I+HGT GEDG++QG L + Sbjct: 43 -----DPKETPLSELKAQGFQT---------------AFNILHGTYGEDGAVQGALELLG 82 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ GS V ASA MDK K + + GL + F L + F VE KLGLP+FV Sbjct: 83 IPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVL----HDDTDFDAVEEKLGLPMFV 138 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KPA +GSSVGV KV + + + F ++I E+ I G E C VL N + Sbjct: 139 KPAAEGSSVGVVKVKGKGRLKSVYEELKHFQGEIIAERFIGGGEYSCPVL---NGKGLPG 195 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 I+ ++FY Y+ KY D + +R +AV+ Q +G G RVD Sbjct: 196 IHIIPATEFYDYEAKYNRNDTIYQCPSEDLTEAEESLMRELAVRGAQAIGAEGCVRVDFL 255 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 + ++ + EINTLPG T S+ PK G+G+ DL +++ A Sbjct: 256 KDTDGKLYLLEINTLPGMTGHSLVPKSAAVMGVGFADLCIEILKTAH 302 >emb|CAB95026.1| (AJ237851) D-alanine-D-alanine ligase [Prochlorococcus marinus] Length = 247 Score = 292 bits (749), Expect = 3e-78 Identities = 104/248 (41%), Positives = 154/248 (61%), Gaps = 7/248 (2%) Query: 109 TLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPF-----ITLTR 163 GEDGS+QG ++ P+VGS VL SA MDK K AGL + I L Sbjct: 1 PNGEDGSIQGFFQLTGKPYVGSGVLGSALGMDKIAMKAAFSAAGLPQVNYCEIHSIDLLD 60 Query: 164 ANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQG 223 R + ++E++LG P F+KPAN GSSVG+SK +++ +DLA + D +++VE+ Sbjct: 61 KKRLSYLIQKIETQLGYPCFIKPANLGSSVGISKAYDKKELLNGLDLAAQLDSRIVVEKN 120 Query: 224 IKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIR 283 IK RE+ECAV+G + S GE+ +SD+Y YD+KY ++ K ++PA I +I+ +++ Sbjct: 121 IKARELECAVIGKKQIKTSCVGEVRYSSDWYDYDSKYS-KNSTKTLIPAPIPEKISKEVQ 179 Query: 284 AIAVQAYQTLGCAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDL 342 ++++ A + + G+ARVD F E + + INEINT+PGFT SMYP LW ASG+ + L Sbjct: 180 SLSILACKAISAEGIARVDFFYDEEKDSLWINEINTMPGFTEQSMYPMLWDASGIDISQL 239 Query: 343 ITRLIELA 350 + RLIE A Sbjct: 240 VARLIESA 247 >sp|O51927|DDL_BUCAP D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAC46067.1| (AF012886) D-alanine: D-alanine ligase [Buchnera aphidicola] Length = 306 Score = 292 bits (747), Expect = 5e-78 Identities = 87/349 (24%), Positives = 171/349 (48%), Gaps = 50/349 (14%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K ++ ++ GG +E ++S++S I+ ++ +S F+ + + Sbjct: 2 KKKIAVLLGGILSERKISIKSGYAILQSLLRSGFNAYAID-TRD---------------- 44 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 P D + +HGT GEDGS+QG+L Sbjct: 45 ----------------FPIMQL----------KKQGFDSAYIALHGTGGEDGSIQGILEY 78 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES---KLG 179 N+P+ GS +++SA +DK TK L + L + P I L + + +++ + KL Sbjct: 79 LNIPYTGSGIMSSAISLDKWRTKLLWKSLSLRVLPDIYLQKKDISKYTYSYILKKILKLK 138 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+ +KP N GSS+G++ V + +++LAF + + +I+E+ +KG E ++L N Sbjct: 139 FPVVIKPNNAGSSIGITIVNHPDLLIDSINLAFNYSNNIIIEKFLKGTEYTVSIL---NK 195 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 + +I+ ++FY Y +KYI E + + P+ + + ++++ I A+ +LGC G Sbjct: 196 KVLPPIKIITKNNFYDYSSKYI-ESSTEYICPSGLNYQKEEELKKIVEIAWNSLGCKGCG 254 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 R+D L +++ + EINT+PG T+ S+ P + + + +LI ++++ Sbjct: 255 RIDAILDNKDKFWLLEINTIPGMTHRSLVPMASKKYRISFVNLILKILK 303 >ref|NP_273472.1| (NC_003112) D-alanine--D-alanine ligase [Neisseria meningitidis MC58] pir||C81201 D-alanine--D-alanine ligase NMB0424 [imported] - Neisseria meningitidis (group B strain MD58) gb|AAF40862.1| (AE002398) D-alanine--D-alanine ligase [Neisseria meningitidis MC58] Length = 304 Score = 292 bits (747), Expect = 5e-78 Identities = 104/347 (29%), Positives = 157/347 (44%), Gaps = 50/347 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 +V ++ GG S+E E+SL S I++A+ D Sbjct: 6 KVAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAF----------------------- 42 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 P T L+++ + F I+HGT GEDG++QG L + Sbjct: 43 -----DPKETPLSELKAQGFQT---------------AFNILHGTYGEDGAVQGALELLG 82 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ GS V ASA MDK K + + GL + F L + F VE KLGLP+FV Sbjct: 83 IPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVL----HDDTDFDAVEEKLGLPMFV 138 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KPA +GSSVGV KV + + + ++I E+ I G E C VL N + Sbjct: 139 KPAAEGSSVGVVKVKGKGRLKSVYEELKHLQGEIIAERFIGGGEYSCPVL---NGKGLPG 195 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 I+ ++FY Y+ KY +D + +R +AV+ Q +G G RVD Sbjct: 196 IHIIPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRGAQAIGAEGCVRVDFL 255 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 + ++ + EINTLPG T+ S+ PK +G+G+ DL +++ A Sbjct: 256 KDTDGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCIEILKTAH 302 >ref|NP_220634.1| (NC_000963) D-ALANINE--D-ALANINE LIGASE (ddlB) [Rickettsia prowazekii] sp|Q9ZDS6|DDL_RICPR D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||E71679 D-alanine--D-alanine ligase (EC 6.3.2.4) B - Rickettsia prowazekii emb|CAA14711.1| (AJ235271) D-ALANINE--D-ALANINE LIGASE (ddlB) [Rickettsia prowazekii] Length = 321 Score = 289 bits (741), Expect = 3e-77 Identities = 97/350 (27%), Positives = 168/350 (47%), Gaps = 56/350 (16%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +V GG SAE EVSL S+ + A+ + + V + + + + Sbjct: 22 KKHIALVAGGMSAEREVSLVSSAGVSKALIELGYKVTFVDMGADIAVKLQE--------- 72 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D++F +HGT GEDG L G+L + Sbjct: 73 ----------------------------------INPDIVFNCLHGTYGEDGCLPGLLNI 98 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+ S +L+SA DK + + +NIA I +++++ N + P Sbjct: 99 MRIPYTHSGLLSSALAFDKIHFRSCVLKNNINIADSIVVSKSDHINTD------PMKRPY 152 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 +KP QGSS+GV + E+ + D F + +I+EQ I+G+E++ A+L N +A Sbjct: 153 VIKPLKQGSSIGVEVIFEEDDFNF-TDYDFPYGEDIIIEQYIQGQELQVALL---NGKAL 208 Query: 243 TCGEI-VLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 EI +L + FY Y+TKY +E A+ V PA + + K+ + + Y+T+ C G R Sbjct: 209 GVLEIKLLKNRFYDYETKY-NEGFAEHVCPAPLPANLYKKLLIESEKIYKTINCKGPVRA 267 Query: 302 DVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + L + N++ + EINT PG T +S+ P++ +G+ +T+LI +I++A Sbjct: 268 EFILEEQTNKLYVLEINTHPGMTPLSIVPEIAAYAGINFTNLIEEIIKMA 317 >ref|NP_228072.1| (NC_000853) D-alanine--D-alanine ligase [Thermotoga maritima] sp|P46805|DDL_THEMA D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||B72400 D-alanine--D-alanine ligase (EC 6.3.2.4) B - Thermotoga maritima (strain MSB8) gb|AAD35347.1|AE001708_15 (AE001708) D-alanine--D-alanine ligase [Thermotoga maritima] Length = 303 Score = 287 bits (735), Expect = 1e-76 Identities = 91/349 (26%), Positives = 157/349 (44%), Gaps = 54/349 (15%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +RV ++ GG S E E+SL+S + + A++K ++ + + + Sbjct: 1 MRVALLMGGVSREREISLRSGERVKKALEKLGYEHTVFDVRED----------------- 43 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + L + DV+F ++HGT GEDG+LQ +L Sbjct: 44 -------------------------FLKKVDQLKSFDVVFNVLHGTFGEDGTLQAILDFL 78 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 + + GSD +S C DK VT R L+ + I F+ + + + LG P Sbjct: 79 GIRYTGSDAFSSMICFDKLVTYRFLKGT-VEIPDFVEIKEFMKTS--------PLGYPCV 129 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP-QAS 242 VKP +GSS+GV S+E++ A+ VIV++ I GRE+ ++L + + Sbjct: 130 VKPRREGSSIGVFVCESDEEFQHALKEDLPRYGSVIVQKYIPGREMTVSILETEKGFEIL 189 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 E+ FY Y KY + + ++PA + P ++ +A++A+ GC G RVD Sbjct: 190 PVLELRPKRRFYDYVAKYT-KGETEFILPAPLNPSEERLVKEMALKAFVEAGCRGFGRVD 248 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 + + EINT+PG T S P +A G+ + +L+ +++ A Sbjct: 249 GIFS-DGRFYFLEINTVPGLTETSDLPASAKAGGIEFEELVEIILKSAF 296 >ref|NP_539499.1| (NC_003317) D-ALANINE--D-ALANINE LIGASE [Brucella melitensis] gb|AAL51763.1| (AE009500) D-ALANINE--D-ALANINE LIGASE [Brucella melitensis] Length = 315 Score = 285 bits (730), Expect = 5e-76 Identities = 103/356 (28%), Positives = 166/356 (45%), Gaps = 58/356 (16%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M V ++ GG S+E VSL S +++ + V + +D+ + + Sbjct: 8 MTGKHVAVLMGGFSSERSVSLSSGVACATTLEECGYRVTRIDVDRNVASILVE------- 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 DV+F +HG GEDG++QG+L Sbjct: 61 ------------------------------------LKPDVVFNALHGPFGEDGAIQGVL 84 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 +P+ S VLASA MDKD K++ AG+ +AP + R + + + Sbjct: 85 EYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPSRLMNRFDI------GSQHPMKP 138 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAV--DLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 P VKP +GSS GV V ++ + V +++ +V+VE I GRE+ CAV+G+ Sbjct: 139 PYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEGYIAGRELTCAVMGDR- 197 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 C + + FY YD+KY+ + V PA I P I KI+ +A+ A++ +GC G+ Sbjct: 198 -AMDVCEIMPVGYQFYDYDSKYV-AGASTHVCPAKILPNIYQKIQTMALTAHRAIGCRGV 255 Query: 299 ARVDVFLT----PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 +R D E EVV EINT PG T S+ P + +A+G+ + +L++ ++E A Sbjct: 256 SRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAELLSWMVEDA 311 >ref|NP_213366.1| (NC_000918) D-alanine:D-alanine ligase [Aquifex aeolicus] sp|O66806|DDL_AQUAE D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||B70347 D-alanine--D-alanine ligase (EC 6.3.2.4) B - Aquifex aeolicus gb|AAC06765.1| (AE000694) D-alanine:D-alanine ligase [Aquifex aeolicus] Length = 291 Score = 283 bits (725), Expect = 2e-75 Identities = 88/345 (25%), Positives = 164/345 (47%), Gaps = 56/345 (16%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +RV ++ GG+S+E E+SL++ K + A+ + +V L +DK+ + + Sbjct: 1 MRVVVLMGGRSSEREISLKTGKAVAKALRELGHEVYELDLDKELPCKLLE---------- 50 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 D +F +HG GEDG++QG+L + Sbjct: 51 ---------------------------------IKPDKVFIALHGRYGEDGTVQGLLEIL 77 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFIT-LTRANRHNISFAEVESKLGLPL 182 ++P+ GSD +ASA +DKD TKR+++ G+N + T ++ + N + + P Sbjct: 78 DIPYTGSDTIASAVSIDKDFTKRIVKSLGINTPDWETFISEGDVLNTEWNK------FPA 131 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 VKP +GSSVG+ V S E+ + +V+VE+ ++GR++ +L +A Sbjct: 132 VVKPVREGSSVGLKIVESLEELKEYALDLLKKTERVMVEEFVEGRDMTVGIL---KGEAL 188 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 EI+ Y Y+ KY ++ +++ K++ I+++ + L AR+D Sbjct: 189 PVVEIIPKKGVYDYECKYTKGMSEYRILK---DEKLSKKLQEISLKISKFLSLKDFARID 245 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 +T E ++ E+NT+PG T +S+ P + G+ + LI+ +I Sbjct: 246 FRVTKEGKIFFLEVNTIPGMTELSLLPMAAKEKGMDFKKLISIII 290 >gb|AAB17900.1| (U39775) D-alanine:D-alanine ligase [Enterococcus pseudoavium] Length = 200 Score = 283 bits (725), Expect = 2e-75 Identities = 80/201 (39%), Positives = 123/201 (60%), Gaps = 4/201 (1%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRHNISFAEVE 175 L ++P+VG+ V+ SA MDK +TK +L+ AG+ P++ + + F + E Sbjct: 1 FLETLDMPYVGAGVMTSACAMDKIMTKYILQAAGIPQVPYVPVLKNQWKENPKQVFDKCE 60 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 L P+F+KPAN GSSVG+S+ + E+ A+ A+ +D + +VEQGI REIE AVLG Sbjct: 61 GTLLYPMFIKPANMGSSVGISRAENREELQNALKEAYRYDSRALVEQGIDAREIEVAVLG 120 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 ND+ + + GE+V FY Y+ KYID + ++ +PA + E+ K R A AY LG Sbjct: 121 NDDVRTTLPGEVVKEVAFYDYNAKYID-NTIQMAIPAEVPKEVMQKAREYAKLAYTMLGG 179 Query: 296 AGMARVDVFLTPENEVVINEI 316 +G++R D FLT +NE+ +NE+ Sbjct: 180 SGLSRCDFFLTNKNELFLNEL 200 >gb|AAA60989.1| (L29641) D-alanine-D-alanine ligase-related enzyme [Enterococcus casseliflavus] Length = 200 Score = 283 bits (724), Expect = 2e-75 Identities = 84/201 (41%), Positives = 124/201 (60%), Gaps = 4/201 (1%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRHNISFAEVE 175 L +P+VG+ VL SA MDK +TK +L+ AG+ P++ + + F + E Sbjct: 1 FLETIGMPYVGAGVLTSACGMDKIMTKYILQAAGIPQVPYVPVLKNAWKENPKKIFDQCE 60 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 L P+FVKPAN GSSVG+SK + E+ A+ A+ +D + IVEQGI+ REIE AVLG Sbjct: 61 GSLLYPMFVKPANMGSSVGISKAENREELQNALQEAYRYDTRAIVEQGIEAREIEVAVLG 120 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 N++ + + GEIV FY Y++KYID + ++ +PA I E K + A +AY LG Sbjct: 121 NEDVRTTMPGEIVKDVAFYDYNSKYID-NRIEMQIPAQIPEETQAKAQEFAKKAYTMLGG 179 Query: 296 AGMARVDVFLTPENEVVINEI 316 +G++R D FLT +NE+ +NE+ Sbjct: 180 SGLSRCDFFLTNKNELFLNEL 200 >gb|AAA60988.1| (L29640) D-alanine-D-alanine ligase-related enzyme [Enterococcus flavescens] Length = 200 Score = 282 bits (722), Expect = 4e-75 Identities = 83/201 (41%), Positives = 124/201 (61%), Gaps = 4/201 (1%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRHNISFAEVE 175 L +P+VG+ VL SA MDK +TK +L+ AG+ P++ + + F + E Sbjct: 1 FLETIGMPYVGAGVLTSACGMDKIMTKYILQAAGIPQVPYVPVLKNAWKENPKKIFDQCE 60 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 L P+FVKPAN GSSVG+SK + ++ A+ A+ +D + IVEQGI+ REIE AVLG Sbjct: 61 GSLLYPMFVKPANMGSSVGISKAENRQELQNALQEAYRYDTRAIVEQGIEAREIEVAVLG 120 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 N++ + + GEIV FY Y++KYID + ++ +PA I E K + A +AY LG Sbjct: 121 NEDVRTTMPGEIVKDVAFYDYNSKYID-NRIEMQIPAQIPEETQAKAQEFAKKAYTMLGG 179 Query: 296 AGMARVDVFLTPENEVVINEI 316 +G++R D FLT +NE+ +NE+ Sbjct: 180 SGLSRCDFFLTNKNELFLNEL 200 >gb|AAF37343.1|AF170804_1 (AF170804) D-alanine:D-alanine ligase [Enterococcus durans] Length = 200 Score = 279 bits (715), Expect = 3e-74 Identities = 82/201 (40%), Positives = 122/201 (59%), Gaps = 4/201 (1%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRHNISFAEVE 175 L NLP+VG+ VL SA MDK +TK +L+ G+ P++ + + F + E Sbjct: 1 FLETLNLPYVGAGVLTSACAMDKIMTKYILQAGGVPQVPYVPVLKNQWKENPKKVFDQCE 60 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 L P+FVKPAN GS VG+SK + E+ A+ A+++D + IVEQGI+ REIE AVLG Sbjct: 61 GSLLYPMFVKPANMGSGVGISKAENREELQNALRTAYQYDSRAIVEQGIEAREIEVAVLG 120 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 N++ + + GE+V FY YD KYI + ++ +PA + E+ K + A AY LG Sbjct: 121 NEDVRTTLPGEVVKDVAFYDYDAKYI-NNKIEMQIPAEVPEEVYQKAQEYAKLAYTMLGG 179 Query: 296 AGMARVDVFLTPENEVVINEI 316 +G++R D FLT +NE+ +NE+ Sbjct: 180 SGLSRCDFFLTNKNELFLNEL 200 >ref|NP_298089.1| (NC_002488) D-alanine--D-alanine ligase B [Xylella fastidiosa 9a5c] pir||F82763 D-alanine--D-alanine ligase B XF0799 [imported] - Xylella fastidiosa (strain 9a5c) gb|AAF83609.1|AE003919_20 (AE003919) D-alanine--D-alanine ligase B [Xylella fastidiosa 9a5c] Length = 320 Score = 279 bits (714), Expect = 3e-74 Identities = 108/350 (30%), Positives = 167/350 (46%), Gaps = 52/350 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 RV ++ GG SAE EVSL S +N+++ + D Sbjct: 20 RVAVLLGGTSAEREVSLLSGRNVLEVLRVRGVD--------------------------- 52 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTL--GEDGSLQGMLRV 122 A S+ VP + + D +F ++HG GEDG +QG+++ Sbjct: 53 --------AQSVDGVPALAQALVE--------RRFDRVFNVLHGHNGGGEDGVVQGLMQA 96 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+ GSDVL SA MDK TK++ GL + +L+ VE LG P+ Sbjct: 97 FGVPYTGSDVLGSALSMDKVRTKQVWLALGLPTPRYASLSVCATAVEVRQAVEM-LGFPV 155 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 +KPA +GSSVGVS+V + E AV LA ++ ++++EQ I+G E+ ++L + A Sbjct: 156 IIKPAKEGSSVGVSRVFALEHLEEAVALAARYEGELLMEQLIEGDELTVSIL---DEMAL 212 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 IV +Y Y+ KY+ ED + V P + +I +A+ A++ +GC G RVD Sbjct: 213 PSIRIVPQGQWYDYNAKYLAED-TQYVCP-GLDDVAEAEIARLALAAFRAVGCRGWGRVD 270 Query: 303 VFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 V + E+NT PG T S+ PK G+G+ DL+ R++E L Sbjct: 271 VMRERGSGRFFLLEVNTAPGMTTHSLVPKAASQLGMGFDDLVWRILEQTL 320 >gb|AAB17901.1| (U39777) D-alanine:D-alanine ligase [Enterococcus saccharolyticus] Length = 200 Score = 278 bits (713), Expect = 5e-74 Identities = 79/201 (39%), Positives = 125/201 (61%), Gaps = 4/201 (1%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRHNISFAEVE 175 L +P+VG+ VL SA MDK +TK +L AG+ P++ + + F + E Sbjct: 1 FLETIRMPYVGAGVLTSACGMDKIMTKYILHSAGIPQVPYVPVLKNQWKENPKQIFEQCE 60 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 L P+FVKPAN GSSVG+SK + + A++ A+++D++ ++EQGI+ REIE A+LG Sbjct: 61 GSLRYPMFVKPANMGSSVGISKAENRVELQNALEEAYKYDNRAVIEQGIEAREIEVAILG 120 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 N++ + + GEIV FY Y++KYID + + +PA + E+ +K + A AY LG Sbjct: 121 NEDVRTTMAGEIVKDVAFYDYNSKYID-NSIVMQIPAQVPDEVQEKAQEYAKLAYTMLGG 179 Query: 296 AGMARVDVFLTPENEVVINEI 316 +G++R D FLT +NE+ +NE+ Sbjct: 180 SGLSRCDFFLTNKNELFLNEL 200 >ref|NP_421346.1| (NC_002696) D-alanine--D-alanine ligase B [Caulobacter crescentus] gb|AAK24514.1| (AE005922) D-alanine--D-alanine ligase B [Caulobacter crescentus] Length = 324 Score = 278 bits (711), Expect = 6e-74 Identities = 106/356 (29%), Positives = 160/356 (44%), Gaps = 54/356 (15%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 + ++ GG S+E +VSL S +A+++ V + +L A P Sbjct: 15 HIAVLLGGPSSERKVSLVSGAACAEALERLGAKVSRID--------PGPDVAQVLAATKP 66 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 D++F +HG GEDG +QG+L Sbjct: 67 -----------------------------------DMVFNALHGEWGEDGCVQGVLETLK 91 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 LP+ S VLASA MDK K +L AG+ + NRH+++ V L P V Sbjct: 92 LPYTHSGVLASALAMDKAKAKAVLAAAGVTVPGGGLF---NRHDVARDHV---LQPPYVV 145 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLA--FEFDHKVIVEQGIKGREIECAVLGNDN-PQA 241 KP +GSSVGV + A + F +V+VE I+G E+ AVLG N P+A Sbjct: 146 KPNAEGSSVGVFIIKEGANRPPEEVGAPSWTFGEEVMVEPYIQGMELAVAVLGESNGPRA 205 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 +I ++ FY Y+ KY E G+ V+PA I + D+ +A A+ LGC G+ R Sbjct: 206 LAVTDIRASTGFYDYEAKYS-EGGSIHVLPAPIPNAVRDRAMRMAELAHTALGCRGVTRS 264 Query: 302 DVFLTPENE-VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 D N+ +V+ E+NT PG T S+ P+ G+ + L+ ++E A R +A Sbjct: 265 DFRYDDINDLLVLLEVNTQPGMTPTSLAPEQADHVGIPFDQLVLWIVEDAYARCSA 320 >gb|AAF37344.1|AF170805_1 (AF170805) D-alanine:D-alanine ligase [Enterococcus malodoratus] Length = 200 Score = 278 bits (711), Expect = 8e-74 Identities = 81/201 (40%), Positives = 122/201 (60%), Gaps = 4/201 (1%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRHNISFAEVE 175 L ++P VG+ V+ SA MDK +TK +L+ AG+ P++ + + F + E Sbjct: 1 FLETLDMPDVGAGVVTSACAMDKIMTKYILQAAGIPQVPYVPVLKNQWKENPKQIFDKCE 60 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 L P+F+KPAN GSSVG+S+ + E+ A+ A+ +D + +VEQGI REIE AVLG Sbjct: 61 GTLLYPMFIKPANMGSSVGISRAENREELQNALQEAYRYDSRALVEQGIDAREIEVAVLG 120 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 ND+ + + GE+V FY Y+ KYID + ++ +PA I E+ K R A AY LG Sbjct: 121 NDDVRTTLPGEVVKEVAFYDYNAKYID-NTIQMAIPAEIPEEVMQKARDYAKLAYTMLGG 179 Query: 296 AGMARVDVFLTPENEVVINEI 316 +G++R D FLT +NE+ +NE+ Sbjct: 180 SGLSRCDFFLTNKNELFLNEL 200 >gb|AAF37342.1|AF170803_1 (AF170803) D-alanine:D-alanine ligase [Enterococcus columbae] Length = 199 Score = 274 bits (702), Expect = 9e-73 Identities = 82/201 (40%), Positives = 124/201 (60%), Gaps = 5/201 (2%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITL---TRANRHNISFAEVE 175 L +P+VG+ VLASA MDK +TK +L+ G+ P++ + + F + E Sbjct: 1 FLETLKMPYVGTGVLASACGMDKIMTKYVLQAGGIPQVPYMPVLYTQWKEQPQQIFEQCE 60 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 L P+FVKPAN GSSVG+SK + E+ A+ +D +VI+EQGI+ REIE AVLG Sbjct: 61 GSLLYPMFVKPANMGSSVGISKAENREELDNALKE-LLYDTRVIIEQGIEAREIEVAVLG 119 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 N++ + + GEIV FY Y++KYID + + +PA + E+ +K + A +AY LG Sbjct: 120 NEDVRTTVAGEIVKDVAFYDYNSKYID-NKITMQIPAEVPQEVQEKAQEYAKKAYTMLGG 178 Query: 296 AGMARVDVFLTPENEVVINEI 316 +G++R D FLT +NE+ +NE+ Sbjct: 179 SGLSRCDFFLTNKNELFLNEL 199 >gb|AAB17899.1| (U39778) D-alanine:D-alanine ligase [Enterococcus dispar] Length = 200 Score = 273 bits (700), Expect = 1e-72 Identities = 80/201 (39%), Positives = 125/201 (61%), Gaps = 4/201 (1%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRHNISFAEVE 175 L ++P++G+ VL SA MDK +TK +L+ AG+ P++ + + F + E Sbjct: 1 FLETIDMPYIGAGVLTSACGMDKIMTKYILQAAGIPQVPYVPVLKNLWKENPKQIFEQCE 60 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 L P+FVKPAN GSSVG+SK + E+ A+ A+++D + IVEQGI+ EIE A+LG Sbjct: 61 GTLLYPMFVKPANMGSSVGISKAENREELQNALQEAYKYDTRAIVEQGIERGEIEVAILG 120 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 N++ + + GEIV FY Y++KYID + + +PA I ++ K + A +AY LG Sbjct: 121 NEDVRTTLPGEIVKDVAFYDYNSKYID-NQIIMQIPAEIPEDVQQKAQDFAKKAYVMLGG 179 Query: 296 AGMARVDVFLTPENEVVINEI 316 +G++R D FLT +NE+ +NE+ Sbjct: 180 SGLSRCDFFLTNKNELFLNEL 200 >gb|AAB41852.1| (U69163) D-Alanine:D-Alanine ligase [Streptococcus gordonii] Length = 197 Score = 272 bits (695), Expect = 6e-72 Identities = 76/198 (38%), Positives = 122/198 (61%), Gaps = 1/198 (0%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 L V +P+VG ++L+S+ MDK TKR+L AG+ P++ + E+E KL Sbjct: 1 FLEVLKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAVVDGEDLEQKIQEIEEKL 60 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 P+F KP+N GSSVG+SK ++E+ ++DLAF++D +V+VEQG+ REIE +LGN + Sbjct: 61 SYPVFTKPSNMGSSVGISKSDNQEELRASLDLAFKYDSRVLVEQGVTAREIEVGLLGNTD 120 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 ++S GE+V FY Y KYID + + +PA + + + +R A A++ +G G+ Sbjct: 121 VKSSLPGEVVKDVAFYDYQAKYID-NKITMAIPAQLPEGVVNTMRQNAETAFRAIGGLGL 179 Query: 299 ARVDVFLTPENEVVINEI 316 +R D F T + +V +NE+ Sbjct: 180 SRCDFFYTEDGQVFLNEL 197 >gb|AAF37349.1|AF170810_1 (AF170810) D-alanine:D-alanine ligase [Enterococcus sulfureus] Length = 200 Score = 271 bits (694), Expect = 6e-72 Identities = 80/201 (39%), Positives = 128/201 (62%), Gaps = 4/201 (1%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRHNISFAEVE 175 L V ++P++G+ V+ SA MDK +TK +L+ AG+ P++ + F + E Sbjct: 1 FLEVLDMPYIGAGVVTSACDMDKIMTKYILQAAGIPQVPYMPVLEHQWKENPKQVFEQCE 60 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 L P+FVKPAN GSSVG+SK + + A+ A+++D +V++EQGI+ REIE AVLG Sbjct: 61 GSLLYPMFVKPANMGSSVGISKAENRLELQAALAEAYKYDSRVVIEQGIEAREIEVAVLG 120 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 N++ + + GEIV FY Y++KYID + ++ +PA ++ E+ K + A +AY LG Sbjct: 121 NEDVRTTAAGEIVKDVAFYDYNSKYIDNN-IEMQIPAQVSDEVQQKAQEYAKKAYIMLGG 179 Query: 296 AGMARVDVFLTPENEVVINEI 316 +G++R D FLT +NE+ +NE+ Sbjct: 180 SGLSRCDFFLTSKNELFLNEL 200 >gb|AAB17897.1| (U39774) D-alanine:D-alanine ligase [Enterococcus avium] Length = 200 Score = 271 bits (693), Expect = 8e-72 Identities = 76/201 (37%), Positives = 120/201 (58%), Gaps = 4/201 (1%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRHNISFAEVE 175 L ++P+VG+ V+ SA MDK +TK +L+ AG+ P++ + + F + E Sbjct: 1 FLETLDMPYVGAGVMTSACAMDKIMTKYILQAAGIPQVPYVPVLKNQWKENPKQIFDKCE 60 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 L P+FVKPAN GSSVG+S+ + E+ A+ A+ +D + +VEQGI EIE AVLG Sbjct: 61 GTLLYPMFVKPANMGSSVGISRAENREELQNALQEAYRYDSRALVEQGIDACEIEVAVLG 120 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 ND+ + + GE+V FY Y+ KYI + ++ +PA + ++ K R A A LG Sbjct: 121 NDDVRTTLPGEVVKEEAFYDYNAKYI-NNTIQMAIPADVPEDVMQKARDFAKSAISMLGG 179 Query: 296 AGMARVDVFLTPENEVVINEI 316 +G++R D FLT +NE+ ++E+ Sbjct: 180 SGLSRCDFFLTNKNELFLDEL 200 >gb|AAC16915.1| (U91914) D-alanine:D-alanine ligase [Streptococcus constellatus] Length = 197 Score = 270 bits (692), Expect = 1e-71 Identities = 76/198 (38%), Positives = 126/198 (63%), Gaps = 1/198 (0%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 L V +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE+ L Sbjct: 1 FLEVLKMPYVGCNILSSSVAMDKITTKRVLASAGIPQVPYVAVIEGENIDEKIAEVEANL 60 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 P+F KP+N GSSVG+SK ++++ A++LAF++D +V++EQG+ REIE +LGN+ Sbjct: 61 TYPVFTKPSNMGSSVGISKSENQDELRSALELAFKYDSRVLIEQGVNAREIEVGLLGNEG 120 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 ++S GE+V FY Y+ KYID + + +PA ++ ++ +R A +A+ +G G+ Sbjct: 121 AKSSWPGEVVKDVAFYDYEAKYID-NKITMDIPAKLSEDVIVTMRQYAEKAFHAIGGVGL 179 Query: 299 ARVDVFLTPENEVVINEI 316 AR D F T + E+ +NE+ Sbjct: 180 ARCDFFYTDKGEIFLNEL 197 >gb|AAB41853.1| (U69164) D-Alanine:D-Alanine ligase [Streptococcus mitis] Length = 197 Score = 270 bits (690), Expect = 2e-71 Identities = 78/198 (39%), Positives = 124/198 (62%), Gaps = 1/198 (0%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 L V +P+VG ++L+S+ MDK TKR+L G+ P++ + + AEVE KL Sbjct: 1 FLEVLKMPYVGCNILSSSLAMDKITTKRVLESVGIAQVPYVAIVEGDDMTAKIAEVEEKL 60 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 P+F KP+N GSSVG+SK ++E+ A+ LAF++D +V+VEQG+ REIE +LGN + Sbjct: 61 TYPVFTKPSNMGSSVGISKSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVGLLGNYD 120 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ +G G+ Sbjct: 121 VKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGL 179 Query: 299 ARVDVFLTPENEVVINEI 316 +R D F T + E+ +NE+ Sbjct: 180 SRCDFFYTDKGEIFLNEL 197 >gb|AAA24785.1| (L15304) vanB2 ORF [Enterococcus faecalis] Length = 210 Score = 269 bits (689), Expect = 3e-71 Identities = 81/216 (37%), Positives = 130/216 (59%), Gaps = 10/216 (4%) Query: 112 EDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISF 171 EDG +QG+ ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ Sbjct: 1 EDGCIQGLFELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPE--- 57 Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 L P+FVKPA GSS GV+KV E+ A++ A ++D K+++EQ I G E+ C Sbjct: 58 ---AGALTYPVFVKPARSGSSFGVTKVNGTEELNAAIEAAGQYDGKILIEQAISGCEVGC 114 Query: 232 AVLGN-DNPQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAV 287 AV+GN D+ +I L+ + + E G++ + VPA I E ++++ A Sbjct: 115 AVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQETAK 174 Query: 288 QAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFT 323 + Y+ LGC G+ARVD+FL + +V+NE+NTLPGFT Sbjct: 175 KVYRVLGCRGLARVDLFLQEDGGIVLNEVNTLPGFT 210 >gb|AAB41855.1| (U69166) D-Alanine:D-Alanine ligase [Streptococcus oralis] Length = 197 Score = 268 bits (685), Expect = 7e-71 Identities = 78/198 (39%), Positives = 125/198 (62%), Gaps = 1/198 (0%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 L V +P+VG ++L+S+ MDK TKR+L G+ P++ + + AEVE KL Sbjct: 1 FLEVLKMPYVGCNILSSSLAMDKITTKRVLESVGIAQVPYVAIVEGDDVTAKIAEVEEKL 60 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 P+F KP+N GSSVG+SK ++E+ A++LAF++D +V+VEQG+ REIE +LGN + Sbjct: 61 TYPVFTKPSNMGSSVGISKSENQEELRQALELAFQYDSRVLVEQGVNAREIEVGLLGNYD 120 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 +++ GE+V FY YD KYID + + +PA I+ ++ +R A A++ +G G+ Sbjct: 121 VKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRHNAETAFRAIGGLGL 179 Query: 299 ARVDVFLTPENEVVINEI 316 +R D F T + E+ +NE+ Sbjct: 180 SRCDFFYTDKGEIFLNEL 197 >gb|AAB62519.1| (U91912) D-alanine:D-alanine ligase [Streptococcus anginosus] Length = 197 Score = 267 bits (684), Expect = 1e-70 Identities = 74/198 (37%), Positives = 124/198 (62%), Gaps = 1/198 (0%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 L V +P+VG ++L+S+ MDK TKR+L AG+ P++ + + A VE+ L Sbjct: 1 FLEVLKMPYVGCNILSSSVAMDKITTKRVLASAGIPQVPYVAVIEGENIDEKIAAVEANL 60 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 P+F KP+N GSSVG+SK ++++ A++LAF++D +V++EQG+ REIE +LGN+ Sbjct: 61 TYPVFTKPSNMGSSVGISKSENQDELRSALELAFKYDSRVLIEQGVNAREIEVGLLGNEG 120 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 ++S GE+V FY Y+ KYID + + +PA ++ ++ +R A + + +G G+ Sbjct: 121 AKSSLPGEVVKDVAFYDYEAKYID-NKITIDIPAKLSEDVIATMRQYAEKRFHAIGGVGL 179 Query: 299 ARVDVFLTPENEVVINEI 316 AR D F T + E+ +NE+ Sbjct: 180 ARCDFFYTDKGEIFLNEL 197 >gb|AAB62520.1| (U91913) D-alanine:D-alanine ligase [Streptococcus intermedius] Length = 197 Score = 267 bits (682), Expect = 2e-70 Identities = 73/198 (36%), Positives = 121/198 (60%), Gaps = 1/198 (0%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 L V +P+VG ++L+S+ MDK TKR+L AG+ P++ + AEVE L Sbjct: 1 FLEVLKMPYVGCNILSSSIAMDKITTKRVLASAGIPQVPYVAVVEGEDVEEKIAEVEVNL 60 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 P+F KP+N GSSVG+SK ++++ A+ LAF++D +V++EQG+ REIE + GN+ Sbjct: 61 TYPVFTKPSNMGSSVGISKSENKDELCSALKLAFKYDTRVLIEQGVNAREIEVGLFGNEG 120 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 ++S GE+V FY Y+ KYID + + +PA ++ ++ + A +A+ +G G+ Sbjct: 121 AKSSLPGEVVKDVAFYDYEAKYID-NKITMDIPAKLSEDVIATMCDYAEKAFHAIGGVGL 179 Query: 299 ARVDVFLTPENEVVINEI 316 +R D F T + E+ +NE+ Sbjct: 180 SRCDFFYTNKGEIFLNEL 197 >gb|AAK28428.1|AF251259_1 (AF251259) D-alanine-D-X ligase VanD4 [Enterococcus faecium] Length = 210 Score = 266 bits (681), Expect = 2e-70 Identities = 80/216 (37%), Positives = 129/216 (59%), Gaps = 10/216 (4%) Query: 112 EDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISF 171 EDG +QG+L ++ +P+VG D+ +S CMDK + ++++AG+ + F L + + Sbjct: 1 EDGCIQGLLELSGIPYVGCDIQSSVICMDKSLAYMVVKNAGIEVPGFRVLQKGDSLE--- 57 Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 L P+FVKPA GSS GV+KV E+ AV A ++D K++VE+ + G E+ C Sbjct: 58 ---AETLSYPVFVKPARSGSSFGVNKVCRAEELQAAVTEAGKYDSKILVEEAVSGSEVGC 114 Query: 232 AVLGNDN-PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAV 287 A+LGN N +I L F+ + E G++ + VPAA+ E+ ++I+ A Sbjct: 115 AILGNGNDLITGEVDQIELKHGFFKIHQEAQPEKGSENAVIRVPAALPDEVREQIQETAK 174 Query: 288 QAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFT 323 + Y+ LGC G+AR+D+FL + +V+NE+NT+PGFT Sbjct: 175 KIYRVLGCRGLARIDLFLREDGSIVLNEVNTMPGFT 210 >gb|AAF37348.1| (AF170809) D-alanine:D-alanine ligase [Enterococcus solitarius] Length = 200 Score = 266 bits (681), Expect = 2e-70 Identities = 78/201 (38%), Positives = 122/201 (59%), Gaps = 4/201 (1%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRHNISFAEVE 175 L ++P+VG+ V+ SA+ MDK +TK +L + P++ + + F + E Sbjct: 1 FLETIDMPYVGAGVMTSASSMDKIMTKYILHAVDIPQVPYVPVLKSQWKENPKKIFEQCE 60 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 L P+FVKPAN GSSVG++K ++ A+ A+ +D +V++EQ I+ REIE A+LG Sbjct: 61 GTLLYPMFVKPANMGSSVGMAKANDRKELQEALIEAYRYDSRVVIEQSIEAREIEVAILG 120 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 N++ + + GEIV FY Y++KYID + K+ +PA I E+ K R A AY +LG Sbjct: 121 NEDVRTTLPGEIVKEEAFYDYNSKYIDNN-IKMQIPAQIPEEVQQKAREYATIAYTSLGG 179 Query: 296 AGMARVDVFLTPENEVVINEI 316 G++R D FLT +NE+ +NE+ Sbjct: 180 RGLSRCDFFLTNKNELFLNEL 200 >gb|AAB41856.1| (U69167) D-Alanine:D-Alanine ligase [Streptococcus salivarius] Length = 197 Score = 263 bits (673), Expect = 2e-69 Identities = 77/198 (38%), Positives = 118/198 (58%), Gaps = 1/198 (0%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 L LP+VG++VL+S+ MDK +TK +L AG+ + + AE KL Sbjct: 1 FLETLKLPYVGTNVLSSSVAMDKIMTKHILEVAGVPQVAYTVFIEGEDLEAAVAETLEKL 60 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 P+FVKPAN GSSVG+SK +E + A+DLA ++D ++++EQG+ REIE +LGN Sbjct: 61 TFPVFVKPANMGSSVGISKAENEAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTT 120 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 + + GE+V FY Y KYID + + +PA + E+ ++R A +A++ LG G+ Sbjct: 121 VKTTNPGEVVKDVAFYDYQAKYID-NKITMDIPAHVPAEVMTQMRVYAAKAFRALGGCGL 179 Query: 299 ARVDVFLTPENEVVINEI 316 AR D FLT + + +NE+ Sbjct: 180 ARCDFFLTEDGAIYLNEL 197 >sp|P95803|DDL_STRMU PUTATIVE D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAB41854.1| (U69165) D-Alanine:D-Alanine ligase [Streptococcus mutans] Length = 198 Score = 262 bits (670), Expect = 4e-69 Identities = 82/199 (41%), Positives = 122/199 (61%), Gaps = 2/199 (1%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDA-GLNIAPFITLTRANRHNISFAEVESK 177 L V +P+VG+++L+S+ MDK TK++L A + ++ L AEVE K Sbjct: 1 FLEVLKMPYVGTNILSSSVAMDKITTKQVLESATTIPQVAYVALIEGEPLESKLAEVEEK 60 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 L P+FVKPAN GSSVG+SK + A+ LA ++D +V++EQG+ REIE +LGN Sbjct: 61 LIYPVFVKPANMGSSVGISKAENRTDLKQAIALALKYDSRVLIEQGVDAREIEVGILGNT 120 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 + + + GEIV FY Y+ KYID + + +PA I P I +K+R A++TLGC G Sbjct: 121 DVKTTLPGEIVKVVAFYDYEAKYID-NKITMAIPAEIDPVIVEKMRDYRATAFRTLGCCG 179 Query: 298 MARVDVFLTPENEVVINEI 316 ++R D FLT + +V +NE+ Sbjct: 180 LSRCDFFLTEDGKVYLNEL 198 >gb|AAB17898.1| (U39776) D-alanine:D-alanine ligase [Enterococcus cecorum] Length = 195 Score = 261 bits (668), Expect = 6e-69 Identities = 78/201 (38%), Positives = 117/201 (57%), Gaps = 9/201 (4%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT---RANRHNISFAEVE 175 L +P+VG+ VLASA MDK +TK +L+ G+ P++ + + F E Sbjct: 1 FLETLKMPYVGTGVLASACGMDKIMTKYVLQAGGIPQVPYVPVLAMHWKQDPQLIFEHCE 60 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 L P+FVKPAN GSSVG+SK + ++ A++ AF +D + I+EQGI E AVL Sbjct: 61 GSLLYPMFVKPANMGSSVGISKAENRDELEAALNEAFLYDTRGIIEQGI-----EVAVLE 115 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 N + + GEIV FY Y++KYID + + +PA + E+ K + A +AY LG Sbjct: 116 MKNVRTTMAGEIVKDVAFYDYNSKYID-NKIVMQIPAQVPDEVQQKAQEYAKKAYTMLGG 174 Query: 296 AGMARVDVFLTPENEVVINEI 316 +G++R D FLT +NE+ +NE+ Sbjct: 175 SGLSRCDFFLTNKNELFLNEL 195 >ref|NP_187496.1| (NC_003074) unknown protein [Arabidopsis thaliana] gb|AAF07838.1|AC010871_14 (AC010871) unknown protein [Arabidopsis thaliana] Length = 515 Score = 261 bits (668), Expect = 8e-69 Identities = 94/372 (25%), Positives = 151/372 (40%), Gaps = 39/372 (10%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 + LRVG++ GG SAE +SL SA++++D I +V ID + ++ N Sbjct: 76 KSLRVGLICGGPSAERGISLNSARSVLDHIQGDGINVSCYYIDPDLKAFAISSAQVYSNT 135 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 L A + + EH + VD++FP++HG GEDG +Q +L Sbjct: 136 PSDFDFKLESLAQGFSSLSELAEHLV---------SAVDIVFPVIHGRFGEDGGIQELLE 186 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAP--FITLTRANRHNISFAEVESKLG 179 N+PFVG+ DK L++ G P + T ++ I+ +++L Sbjct: 187 SHNIPFVGTGSRECFRAFDKYEASLELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLD 246 Query: 180 LP---LFVKPANQGSSVGVSKVTS-EEQYAIAVDLAFEF-DHKVIVEQGIK-GREIECAV 233 L + VKPA GSS+GV + A +L E D +V+VE I+ E V Sbjct: 247 LEMGKVVVKPAKAGSSIGVKVAFGVNDSIKKATELILEGIDDRVVVEVFIEDAYEFTAIV 306 Query: 234 LGND-----NPQASTCGEI---------VLTSDFYAYDTKYIDEDGAKVVVPAAIAPEIN 279 L +P E+ + + Y KY+ P + Sbjct: 307 LDVGSGSVCHPVVLMPTEVQLQFHGIGDPKENAIFDYRRKYLPTQQVTYHTPPRFPIHVI 366 Query: 280 DKIRAIAVQAYQTLGCAGMARVD-VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLG 338 IR A +Q LG AR+D +L P + N + + G S L+Q + Sbjct: 367 KSIREEASLIFQKLGLRDFARIDGWYLAPNS----NLSSPISGMEQTSF---LFQQASKV 419 Query: 339 YTDLITRLIELA 350 D++T +I + Sbjct: 420 IKDIVTLMIIDS 431 Score = 34.4 bits (78), Expect = 1.9 Identities = 9/29 (31%), Positives = 19/29 (65%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDK 33 +V ++FGG ++E +VS+ S N+ + + Sbjct: 482 KVFVIFGGDTSERQVSVMSGTNVWVNLQR 510 >gb|AAB41851.1| (U69162) D-Alanine:D-Alanine ligase [Streptococcus bovis] Length = 197 Score = 256 bits (655), Expect = 2e-67 Identities = 78/198 (39%), Positives = 121/198 (60%), Gaps = 1/198 (0%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 L + +P+VG+++L+S+ MDK TK +L AG+ + ++T + AEV KL Sbjct: 1 FLEILKMPYVGTNILSSSVAMDKISTKHVLESAGVPLVAYVTYVEGADLEKAVAEVNEKL 60 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 P+F+KPAN GSSVG+SK EE A+DLA ++D ++++E G+ REIE +LGN + Sbjct: 61 TYPVFIKPANMGSSVGISKADDEEGLRSAIDLALKYDSRILIETGVNAREIEVGILGNAD 120 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 Q + GE+V FY YD KYID + + +PA I I +++R A A++ +G G+ Sbjct: 121 VQTTLPGEVVKDVAFYDYDAKYID-NKITMDIPAHIDSNIMEEMRGYATTAFRAIGGCGL 179 Query: 299 ARVDVFLTPENEVVINEI 316 +R D FLT + V +NE+ Sbjct: 180 SRCDFFLTEDGHVYLNEL 197 >ref|NP_281959.1| (NC_002163) putative D-alanine--D-alanine ligase [Campylobacter jejuni] pir||F81351 probable D-alanine--D-alanine ligase (EC 6.3.2.4) Cj0798c [imported] - Campylobacter jejuni (strain NCTC 11168) emb|CAB73063.1| (AL139076) putative D-alanine--D-alanine ligase [Campylobacter jejuni] Length = 346 Score = 252 bits (644), Expect = 4e-66 Identities = 77/327 (23%), Positives = 149/327 (45%), Gaps = 34/327 (10%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 ++ I+FGG S EHE+S+ SA + I++ ++ + D++ +++ + Sbjct: 1 MKFAILFGGNSYEHEISIVSAVVLKKVINQ---NLEFIFCDEERRFYHIPS--------- 48 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNG--------QPLPTVDVIFPIVHGTLGEDGS 115 + ++ + + K E +L Q G + + + ++HG GEDG Sbjct: 49 -----EKMNSKTFSTKAYKKEKELFIKQGGFFSKGFLKENKLECECVINLIHGRDGEDGK 103 Query: 116 LQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVE 175 + + ++ F+G + AS +K++TK + G+ + L + Sbjct: 104 IAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTLDYTILRKNQNSK------- 156 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVL 234 KL P +KPA GSS+G+S V E+ A D+ FEFD+ ++VE+ +E A Sbjct: 157 EKLSFPCIIKPARLGSSIGISIVKDEKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGC 216 Query: 235 GNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 ++ + E +F ++ KY+ G ++ A ++ E+ +K++ + Y L Sbjct: 217 MINDEFVFSIIEEPKKKEFLDFEQKYLSFSGHNELIEADLSEELKEKLKDSFKKIYNPLF 276 Query: 295 CAGMARVDVFLTPENEVVINEINTLPG 321 + R D F+ +NE+ +NEIN PG Sbjct: 277 KGALIRCDFFIL-DNEIYLNEINPNPG 302 >gb|AAF37347.1|AF170808_1 (AF170808) D-alanine:D-alanine ligase [Lactococcus garvieae] Length = 198 Score = 251 bits (643), Expect = 5e-66 Identities = 77/199 (38%), Positives = 123/199 (61%), Gaps = 2/199 (1%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 L + L +VG L++++ MDK + + G+ P++ AEV+ KL Sbjct: 1 FLEIMRLAYVGPKYLSASSTMDKLLANDVFTAVGVPQVPYVAAYADENQEKIHAEVQDKL 60 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN-D 237 P+FVKPAN GSSVG+SKV+S E+ + +A+++D++V++EQG+ REIECAVLGN Sbjct: 61 TFPVFVKPANMGSSVGISKVSSLEELEAGLAVAYKYDNRVVIEQGVNAREIECAVLGNGG 120 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 +++ GE+V DFY Y +KYID + ++ +PA I E+ +K+R A +AYQ + AG Sbjct: 121 KVRSTLPGEVVKDVDFYDYRSKYID-NKIEMAIPADIPAEVAEKMRHYAEKAYQAMNGAG 179 Query: 298 MARVDVFLTPENEVVINEI 316 ++R D F + ++ +NEI Sbjct: 180 LSRCDFFYDQKGDIYLNEI 198 >ref|NP_223393.1| (NC_000921) D-ALANINE--D-ALANINE LIGASE [Helicobacter pylori J99] sp|Q9ZLA5|DDL_HELPJ D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||A71903 D-alanine--D-alanine ligase A homolog - Helicobacter pylori (strain J99) gb|AAD06259.1| (AE001499) D-ALANINE--D-ALANINE LIGASE [Helicobacter pylori J99] Length = 347 Score = 251 bits (642), Expect = 8e-66 Identities = 90/327 (27%), Positives = 148/327 (44%), Gaps = 30/327 (9%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 + ++FGG S EHE+S+ SA + + K R + +D+ +++ + SN Sbjct: 1 MEFCVLFGGASFEHEISIVSAIA-LKGVLKDRIK-YFIFLDENHYFYLIEESN------- 51 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQN--------GQPLPTVDVIFPIVHGTLGEDGS 115 + AQ+ K LI N G + + ++ +VHG GEDG Sbjct: 52 -------MHSKYFAQIKEKKLPPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGK 104 Query: 116 LQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVE 175 L +L + F+G V AS +K +TK +D G+ ++ L NR N A Sbjct: 105 LASLLEFYRIAFIGPRVEASVLSYNKYLTKLYAKDLGVKALDYVLLNEKNRAN---ALDL 161 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVL 234 P VKP+N GSS+GV+ V E++ A+D AFE+ +V++E I+G +E A Sbjct: 162 IGFNFPFIVKPSNAGSSLGVNVVKEEKELIYALDSAFEYSKEVLIEPFIQGVKEYNLAGC 221 Query: 235 GNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 + E +F + KY+D K A ++ + ++++ + Y L Sbjct: 222 KIKKGFCFSYVEEPNKQEFLDFKQKYLDFSRTK-APKANLSNALEEQLKENFKKLYNDLF 280 Query: 295 CAGMARVDVFLTPENEVVINEINTLPG 321 + R D F+ NEV +NEIN +PG Sbjct: 281 DGAIIRCDFFVIE-NEVYLNEINPIPG 306 >ref|NP_207532.1| (NC_000915) D-alanine:D-alanine ligase A (ddlA) [Helicobacter pylori 26695] sp|P56191|DDL_HELPY D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||B64612 D-alanine--D-alanine ligase A homolog - Helicobacter pylori (strain 26695) gb|AAD07784.1| (AE000586) D-alanine:D-alanine ligase A (ddlA) [Helicobacter pylori 26695] Length = 347 Score = 249 bits (636), Expect = 4e-65 Identities = 87/328 (26%), Positives = 149/328 (44%), Gaps = 32/328 (9%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAI-DKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 + ++FGG S EHE+S+ SA + + D+ ++ + +D+ +++ + SN Sbjct: 1 MEFCVLFGGASFEHEISIVSAIALKGVLKDRIKY---FIFLDENHHFYLIEESN------ 51 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQN--------GQPLPTVDVIFPIVHGTLGEDG 114 + AQ+ K LI N G + + ++ +VHG GEDG Sbjct: 52 --------MHSKYFAQIKEKKLPPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDG 103 Query: 115 SLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 L +L + F+G + AS +K +TK +D G+ + L NR N A Sbjct: 104 KLASLLEFYRIAFIGPRIEASVLSYNKYLTKLYAKDLGVKTLDHVLLNEKNRAN---ALD 160 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAV 233 P +KP N GSS+GV+ V E++ A+D AFE+ +V++E I+G +E A Sbjct: 161 LMNFNFPFIIKPNNAGSSLGVNVVKEEKELVYALDGAFEYSKEVLIEPFIQGVKEYNLAG 220 Query: 234 LGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 + E +F + KY+D K A ++ + ++++ + Y L Sbjct: 221 CKIKKDFCFSYVEEPNKQEFLDFKQKYLDFSRNK-APKANLSNALEEQLKENFKKLYNDL 279 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPG 321 + R D F+ +NEV +NEIN +PG Sbjct: 280 FDGAIIRCDFFVI-KNEVYLNEINPIPG 306 >gb|AAB41857.1| (U69168) D-Alanine:D-Alanine ligase [Streptococcus sanguinis] Length = 197 Score = 244 bits (624), Expect = 8e-64 Identities = 73/199 (36%), Positives = 114/199 (56%), Gaps = 3/199 (1%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 L V +P+VG ++L+S+ MDK TKR+L AG+ P++ L E+E KL Sbjct: 1 FLEVLKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKL 60 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREIECAVLGND 237 P+F KP+N GSSVG+SK ++ Q + + +V+VEQG + REIE +LGN Sbjct: 61 TYPVFTKPSNMGSSVGISKSETK-QNCVLLWTWLSIRRRVLVEQGDRTAREIEVGLLGNV 119 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 + +++ GE+V FY Y+ KYID + + +PA I E+ +R A A++ LG G Sbjct: 120 DVKSTLPGEVVKDVAFYDYEAKYID-NKITMDIPAKIPEEVVSLMRQNAEAAFRALGGLG 178 Query: 298 MARVDVFLTPENEVVINEI 316 ++R D F + +V +NE+ Sbjct: 179 LSRCDFFYAEDGQVFLNEL 197 >pir||S36974 hypothetical protein 8 (atpB 5' region) - Synechococcus sp. (PCC 6716) (fragment) emb|CAA49884.1| (X70432) URF 8 [Synechococcus sp.] Length = 218 Score = 243 bits (620), Expect = 3e-63 Identities = 89/240 (37%), Positives = 130/240 (54%), Gaps = 32/240 (13%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQS----AKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 M +LRVG++FGG+S EHEVS+ S A+ D ++ R++VV + I K G+W ++ + Sbjct: 1 MGRLRVGLLFGGRSREHEVSVVSAAAIAQAFADPLNGDRYEVVPIYIQKDGRWRCTETVS 60 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 A SL P E T+DV FPI+HG GEDG++ Sbjct: 61 A---------PAPSLDNQSLWSFPAVAE-------------TIDVWFPILHGPNGEDGTI 98 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN------RHNIS 170 QG+L + P+VGS V ASA MDK + K GL ++ ++R+ R+ Sbjct: 99 QGLLEMMQRPYVGSGVAASAIGMDKILMKTFFGAVGLPQVQYVAISRSELWSDPCRYRQV 158 Query: 171 FAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIE 230 +E++LG P FVKPAN GSSVG+SK + +Q A++ A E D ++IVE G+ RE+E Sbjct: 159 CDRIETELGYPCFVKPANLGSSVGISKAKNRQQLTTALETAAELDRRIIVEAGVVARELE 218 >pir||PN0478 vancomycin resistance-conferring protein - Enterococcus faecalis (strain V583) (fragment) Length = 196 Score = 241 bits (615), Expect = 1e-62 Identities = 70/202 (34%), Positives = 119/202 (58%), Gaps = 10/202 (4%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 + ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 1 LFELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIEKGDKPE------ARTL 54 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN-D 237 P+FVKPA GSS GV+KV S E+ A++ A ++D K+++EQ I G E+ CAV+GN D Sbjct: 55 TYPVFVKPARSGSSFGVTKVNSTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNED 114 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLG 294 + +I L+ + + E G++ ++VPA I E ++++ A + Y+ LG Sbjct: 115 DLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMIIVPADIPVEERNRVQETAKKVYRVLG 174 Query: 295 CAGMARVDVFLTPENEVVINEI 316 C G+ARVD+FL + +V+NE+ Sbjct: 175 CRGLARVDLFLQEDGGIVLNEV 196 >gb|AAA60991.1| (L29639) ligase [Enterococcus flavescens] Length = 197 Score = 240 bits (612), Expect = 2e-62 Identities = 71/198 (35%), Positives = 104/198 (51%), Gaps = 1/198 (0%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 M + LP+VG V SA CM+K + + G+ AP I LT Sbjct: 1 MFELMKLPYVGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNHANQQEQIEAFIQTH 60 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 G P+F KP GSS G++KVT E+ A A+ AF + V++++ I G EI C +LGND+ Sbjct: 61 GFPVFFKPNEAGSSKGITKVTCVEEIASALKEAFTYCSAVLLQKNIAGVEIGCGILGNDS 120 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 C I L F+ ++ KY AK+ VPA + I K++ A Y++LG G+ Sbjct: 121 LTVGACDAISLVDGFFDFEEKY-QLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGL 179 Query: 299 ARVDVFLTPENEVVINEI 316 AR+D F+T + E+ +NEI Sbjct: 180 ARIDFFVTDQGELYLNEI 197 >gb|AAD45667.1|AF136925_1 (AF136925) D-alanine-D-serine ligase [Enterococcus faecalis] Length = 201 Score = 233 bits (596), Expect = 2e-60 Identities = 66/203 (32%), Positives = 117/203 (57%), Gaps = 2/203 (0%) Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 QG+ + ++P+VG + A+A M+K + + G+ P + + + E Sbjct: 1 QGVFELLDIPYVGCGIGAAAISMNKIMLHQFAEIVGVKSTPSMIIEKGQDLQ-KVDEFAK 59 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN 236 G PL++KP GSS G+SKV + A+D A ++D ++++++ +KG EI C +LGN Sbjct: 60 IHGFPLYIKPNEAGSSKGISKVEQKSDLYKAIDEASKYDSRILIQKEVKGVEIGCGILGN 119 Query: 237 DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 + C +I L F+ Y+ KY + A++++PA ++ + + I+ A + Y+ LGC Sbjct: 120 EQLVVGECDQISLVDGFFDYEEKY-NLVTAEILLPAKLSIDKKEDIQIKAKKLYRLLGCK 178 Query: 297 GMARVDVFLTPENEVVINEINTL 319 G+AR+D FLT + E+++NEINTL Sbjct: 179 GLARIDFFLTDDGEILLNEINTL 201 >emb|CAA94438.1| (Z70527) D-alanine:D-alanine ligase-related protein [Streptococcus bovis] Length = 211 Score = 232 bits (592), Expect = 5e-60 Identities = 69/216 (31%), Positives = 115/216 (52%), Gaps = 11/216 (5%) Query: 69 LRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPF 127 + P + H L+ + + +DV FP++HG GEDG++QG+ ++ +P+ Sbjct: 1 WEADSLPAILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPY 60 Query: 128 VGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187 VG D+ +SAACMDK + L ++AG+ + F + + ++ L P+FVKPA Sbjct: 61 VGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPE------AGTLTYPVFVKPA 114 Query: 188 NQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN-DNPQASTCGE 246 GSS GV+KV E+ A++ A ++D K+++EQ I G E+ CAV+GN D+ + Sbjct: 115 RSGSSFGVTKVNGTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQ 174 Query: 247 IVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEIN 279 I L+ + + E G++ + VPA I E Sbjct: 175 IRLSHGIFRIHQENEPEKGSENAMITVPADIPVEER 210 >ref|NP_444059.1| (NC_000914) Y4sG [Rhizobium sp. NGR234] sp|P55650|Y4SG_RHISN HYPOTHETICAL 37.0 KD PROTEIN Y4SG gb|AAB91846.1| (AE000096) Y4sG [Rhizobium sp. NGR234] Length = 336 Score = 231 bits (591), Expect = 6e-60 Identities = 79/328 (24%), Positives = 138/328 (41%), Gaps = 17/328 (5%) Query: 43 IDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTV--- 99 I++ GQ + + + +A + + L + P + Sbjct: 15 INRFGQPYPQPPQPWPQGRIADSVVAALQECGHETLLCEGDKGLLTTLERFMPPDPLART 74 Query: 100 -DVIFPIVHGTLGED--GSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIA 156 ++F + G GE + ML +A +P+ GS L DK ++K L+RD+G+ Sbjct: 75 SGMVFNLAEGIQGEYRFTHVPAMLEMAGVPYTGSSPLGHGLTDDKVISKTLMRDSGVPTP 134 Query: 157 PFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAF-EFD 215 F + R E L P+ VKP ++ +S G+ V Q AV + ++ Sbjct: 135 NFSIMRRG-------TESTDDLRFPVVVKPRHEDNSFGLQLVHEPAQLQQAVKMIVTKYA 187 Query: 216 HKVIVEQGIKGREIECAVLGNDNPQASTCGEIVL---TSDFYAYDTKYIDEDGAKVVVPA 272 +VE+ I GREI A+LGN + E L + ++ KY+ PA Sbjct: 188 QDALVEEYIDGREIHVALLGNQEVEVLPMVEFELGEHEAPLLTWEAKYLAAVQPPKTCPA 247 Query: 273 AIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLW 332 I ++ +R I+V ++ C ARVD+ L + + EIN++PG + S Y Sbjct: 248 KIESKLATLLRDISVATFRACQCRDYARVDLRLDRSGQPFVLEINSMPGLSTHSAYVLAA 307 Query: 333 QASGLGYTDLITRLIELALERHAADNAL 360 +G Y+ LI ++++A R+ + L Sbjct: 308 MTAGHSYSSLINGILDVAHRRYFGNGIL 335 >gb|AAA87682.1| (U08912) putative D-alanine:D-alanine ligase [Lactobacillus plantarum] Length = 201 Score = 227 bits (580), Expect = 1e-58 Identities = 75/201 (37%), Positives = 127/201 (62%), Gaps = 3/201 (1%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 + ++ P+VGS VLASAA DKD+TK++L + ++ +T NR +++A +++ + Sbjct: 1 LFKLLKKPYVGSGVLASAASFDKDITKQILTHHHIQNTKYVVVTPENRDQMTYAYLQAHV 60 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREIECAVLGND 237 G L +KPANQGSS+G+ K +E++Y + AF++D+K++VE+ I RE+EC++LGN+ Sbjct: 61 GDHLSIKPANQGSSIGIHKAENEQEYLDGLADAFKYDYKILVEESIDNPREVECSILGNE 120 Query: 238 NPQASTCGEI--VLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 NP+AS G I T FY Y+ ++D G +P + ++ +I+ + V A++ LG Sbjct: 121 NPKASKLGAIDVPKTDTFYDYNNMFVDASGVTFELPVELPADLTKRIQQMCVDAFRALGL 180 Query: 296 AGMARVDVFLTPENEVVINEI 316 GMARVD ++ + E + EI Sbjct: 181 KGMARVDFLVSEDGEPYLGEI 201 >gb|AAA87683.1| (U08913) putative D-alanine:D-alanine ligase [Lactobacillus salivarius] Length = 201 Score = 223 bits (569), Expect = 2e-57 Identities = 72/201 (35%), Positives = 123/201 (60%), Gaps = 3/201 (1%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 + R+ N P++GS V +S DKD+T +LL G+ ++ +T N+ + +A+V +L Sbjct: 1 LFRLLNKPWIGSGVTSSGVSFDKDLTNKLLTLNGIRNTKYVLVTPENKADYPYAKVAEEL 60 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREIECAVLGND 237 G LFVKPA QGSSVG+ KV +EE+Y A++ F++D+K++VE+ IK RE+EC+VLGN Sbjct: 61 GETLFVKPARQGSSVGIHKVRNEEEYNAALEDGFKYDYKILVEEAIKNPREVECSVLGNR 120 Query: 238 NPQASTCG--EIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 + +AS G I + DFY Y+ K++D G +P + ++ + + +++ A++ L Sbjct: 121 DIKASKLGAIRIPESDDFYDYNNKFVDASGVVFEMPIKLPEKLTKENQQMSLDAFRALDN 180 Query: 296 AGMARVDVFLTPENEVVINEI 316 G+AR+D + + E+ Sbjct: 181 RGLARMDFLVDENDVPYFGEV 201 >gb|AAA87681.1| (U08911) putative D-alanine:D-alanine ligase [Lactobacillus leichmannii] Length = 206 Score = 216 bits (551), Expect = 3e-55 Identities = 87/206 (42%), Positives = 130/206 (62%), Gaps = 8/206 (3%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR-----ANRHNISFAE 173 + R+ + PFVG DVLA+ MDK+ TK L + AG+ +A ++++ R A +S+ Sbjct: 1 LFRLIDKPFVGVDVLAARVTMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDW 60 Query: 174 VESKLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECA 232 V +LG LFVKP+NQGSSVG++ VT + YA A+ AF++D KV+VE+GI G E+E A Sbjct: 61 VSGQLGTTNLFVKPSNQGSSVGITHVTDDSNYAEALAEAFKYDDKVLVEEGIVGTEVETA 120 Query: 233 VLGNDNPQASTCGEIVL-TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 VLGND+P S G I+ + +Y+Y+ KY E + +PA I E +K++ A++ YQ Sbjct: 121 VLGNDHPVVSGVGRIINADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKIYQ 180 Query: 292 TLGCAGMARVDVFLTP-ENEVVINEI 316 C+GMAR+D L + EV+ NE+ Sbjct: 181 ITECSGMARIDSMLRESDGEVIFNEL 206 >emb|CAB64495.1| (AJ387982) D-alanine--D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 205 bits (522), Expect = 6e-52 Identities = 61/147 (41%), Positives = 97/147 (65%), Gaps = 1/147 (0%) Query: 170 SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 AEVE KL P+F KP+N GSSVG+SK ++E+ A++LAF++D +++VEQG+ REI Sbjct: 2 KIAEVEGKLTYPVFTKPSNMGSSVGISKSENQEELRQALELAFQYDSRILVEQGVNAREI 61 Query: 230 ECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 E +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A Sbjct: 62 EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETA 120 Query: 290 YQTLGCAGMARVDVFLTPENEVVINEI 316 ++ +G G++R D F T + E+ +NE+ Sbjct: 121 FRAIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAB64494.1| (AJ387981) D-alanine--D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 204 bits (521), Expect = 7e-52 Identities = 63/147 (42%), Positives = 96/147 (64%), Gaps = 1/147 (0%) Query: 170 SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 AEVE KL P+F KP+N GSSVG+SK ++E+ A+ LAF++D +V+VEQG+ REI Sbjct: 2 KIAEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKLAFQYDSRVLVEQGVNAREI 61 Query: 230 ECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 E +LGN N +++ GE+V FY YD KYID + + +PA I+ ++ +R A A Sbjct: 62 EVGLLGNYNVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETA 120 Query: 290 YQTLGCAGMARVDVFLTPENEVVINEI 316 ++ +G G++R D F T + E+ +NE+ Sbjct: 121 FRAIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAB64493.1| (AJ387980) D-alanine--D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 204 bits (521), Expect = 8e-52 Identities = 62/147 (42%), Positives = 97/147 (65%), Gaps = 1/147 (0%) Query: 170 SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 AEVE KL P+F KP+N GSSVG+SK ++E+ A++LAF++D +V+VEQG+ REI Sbjct: 2 KIAEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALELAFQYDSRVLVEQGVNAREI 61 Query: 230 ECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 E +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A Sbjct: 62 EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETA 120 Query: 290 YQTLGCAGMARVDVFLTPENEVVINEI 316 ++ +G G++R D F T + E+ +NE+ Sbjct: 121 FRAIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAA13256.1| (AJ232253) D-alanine D-alanine ligase [Streptococcus pneumoniae] emb|CAB64456.1| (AJ387988) D-alanine--D-alanine ligase [Streptococcus oralis] emb|CAB64498.1| (AJ387985) D-alanine--D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 204 bits (520), Expect = 1e-51 Identities = 62/147 (42%), Positives = 96/147 (65%), Gaps = 1/147 (0%) Query: 170 SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 AEVE KL P+F KP+N GSSVG+SK ++E+ A++LAF +D +V+VEQG+ REI Sbjct: 2 KIAEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALELAFRYDSRVLVEQGVNAREI 61 Query: 230 ECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 E +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A Sbjct: 62 EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETA 120 Query: 290 YQTLGCAGMARVDVFLTPENEVVINEI 316 ++ +G G++R D F T + E+ +NE+ Sbjct: 121 FRAIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAA13247.1| (AJ232244) D-alanine D-alanine ligase [Streptococcus pneumoniae] emb|CAA13266.1| (AJ232263) D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 204 bits (520), Expect = 1e-51 Identities = 62/147 (42%), Positives = 96/147 (65%), Gaps = 1/147 (0%) Query: 170 SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 AEVE KL P+F KP+N GSSVG+SK ++E+ A+ LAF++D +V+VEQG+ REI Sbjct: 2 KIAEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKLAFQYDSRVLVEQGVNAREI 61 Query: 230 ECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 E +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A Sbjct: 62 EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETA 120 Query: 290 YQTLGCAGMARVDVFLTPENEVVINEI 316 ++ +G G++R D F T + E+ +NE+ Sbjct: 121 FRAIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAB60643.1| (AJ252530) D-ala,D-ala ligase [Streptococcus pneumoniae] emb|CAB64492.1| (AJ387979) D-alanine--D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 204 bits (519), Expect = 1e-51 Identities = 62/147 (42%), Positives = 97/147 (65%), Gaps = 1/147 (0%) Query: 170 SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 AEVE KL P+F KP+N GSSVG+SK ++E+ A++LAF++D +V+VEQG+ REI Sbjct: 2 KIAEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALELAFQYDSRVLVEQGVNAREI 61 Query: 230 ECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 E +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A Sbjct: 62 EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRRNAETA 120 Query: 290 YQTLGCAGMARVDVFLTPENEVVINEI 316 ++ +G G++R D F T + E+ +NE+ Sbjct: 121 FRAIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAB60645.1| (AJ252532) D-ala,D-ala ligase [Streptococcus pneumoniae] emb|CAB64500.1| (AJ387987) D-alanine--D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 204 bits (519), Expect = 1e-51 Identities = 61/147 (41%), Positives = 97/147 (65%), Gaps = 1/147 (0%) Query: 170 SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 AEVE KL P+F KP+N GSSVG+SK ++E+ A++LAF++D +++VEQG+ REI Sbjct: 2 KIAEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALELAFQYDSRILVEQGVNAREI 61 Query: 230 ECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 E +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A Sbjct: 62 EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETA 120 Query: 290 YQTLGCAGMARVDVFLTPENEVVINEI 316 ++ +G G++R D F T + E+ +NE+ Sbjct: 121 FRAIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAA13255.1| (AJ232252) D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 203 bits (518), Expect = 2e-51 Identities = 62/147 (42%), Positives = 96/147 (65%), Gaps = 1/147 (0%) Query: 170 SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 AEVE KL P+F KP+N GSSVG+SK ++E+ A+ LAF++D +V+VEQG+ REI Sbjct: 2 KIAEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKLAFQYDSRVLVEQGVNAREI 61 Query: 230 ECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 E +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A Sbjct: 62 EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAIMRQNAETA 120 Query: 290 YQTLGCAGMARVDVFLTPENEVVINEI 316 ++ +G G++R D F T + E+ +NE+ Sbjct: 121 FRAIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAA13261.1| (AJ232258) D-alanine D-alanine ligase [Streptococcus pneumoniae] emb|CAA13277.1| (AJ232274) D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 203 bits (517), Expect = 2e-51 Identities = 62/147 (42%), Positives = 95/147 (64%), Gaps = 1/147 (0%) Query: 170 SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 AEVE KL P+F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REI Sbjct: 2 KIAEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREI 61 Query: 230 ECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 E +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A Sbjct: 62 EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNN-ITMDIPAKISDDVVAVMRQNAETA 120 Query: 290 YQTLGCAGMARVDVFLTPENEVVINEI 316 ++ +G G++R D F T + E+ +NE+ Sbjct: 121 FRAIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAA13269.1| (AJ232266) D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 203 bits (517), Expect = 3e-51 Identities = 62/147 (42%), Positives = 96/147 (65%), Gaps = 1/147 (0%) Query: 170 SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 AEVE KL P+F KP+N GSSVG+SK ++E+ A++LAF +D +V+VEQG+ REI Sbjct: 2 KIAEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRPALELAFRYDSRVLVEQGVNAREI 61 Query: 230 ECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 E +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A Sbjct: 62 EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETA 120 Query: 290 YQTLGCAGMARVDVFLTPENEVVINEI 316 ++ +G G++R D F T + E+ +NE+ Sbjct: 121 FRAIGGLGLSRCDFFYTDKGEIFLNEL 147 >gb|AAA87680.1| (U08910) putative D-alanine:D-alanine ligase [Weissella confusa] Length = 202 Score = 203 bits (516), Expect = 3e-51 Identities = 69/201 (34%), Positives = 117/201 (57%), Gaps = 4/201 (1%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 + R+ P++G+ ASA DKD+TKR+L AG+ ++ LT + N ++ + +L Sbjct: 1 LFRLLQKPYIGAGTAASAMSFDKDLTKRILNQAGVRNTKYVLLTDQDYQNYTYEGLVKEL 60 Query: 179 GLPL-FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGI-KGREIECAVLGN 236 G + FVK A QGSSVG+S+VT+ ++ V A ++D+KV+VE + K RE+ ++LGN Sbjct: 61 GTEVLFVKAAKQGSSVGISRVTNAAEFEAGVKDALQYDYKVLVEAALNKPREVFISILGN 120 Query: 237 DNPQASTCGEIVLTSD--FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 + P+AS G IVL +Y Y+ K++D G +P + ++ +I +A+ AY+ LG Sbjct: 121 EQPRASRLGGIVLPEQDVWYDYNNKFVDASGMVFELPVELGDDLEKEITDMALTAYKALG 180 Query: 295 CAGMARVDVFLTPENEVVINE 315 G+ R+D + + + E Sbjct: 181 LVGLTRMDFMIDADGTPYLGE 201 >emb|CAA13267.1| (AJ232264) D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 203 bits (516), Expect = 3e-51 Identities = 62/147 (42%), Positives = 96/147 (65%), Gaps = 1/147 (0%) Query: 170 SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 AEVE KL P+F KP+N GSSVG+SK ++E+ A++LAF +D +V+VEQG+ REI Sbjct: 2 KIAEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQALELAFRYDSRVLVEQGVNAREI 61 Query: 230 ECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 E +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A Sbjct: 62 EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVTVMRQNAETA 120 Query: 290 YQTLGCAGMARVDVFLTPENEVVINEI 316 ++ +G G++R D F T + E+ +NE+ Sbjct: 121 FRAIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAA13245.1| (AJ232242) D-alanine D-alanine ligase [Streptococcus mitis] Length = 147 Score = 203 bits (516), Expect = 3e-51 Identities = 62/147 (42%), Positives = 96/147 (65%), Gaps = 1/147 (0%) Query: 170 SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 AEVE KL P+F KP+N GSSVG+SK ++E+ A+ LAF++D +V+VEQG+ REI Sbjct: 2 KIAEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKLAFQYDSRVLVEQGVNAREI 61 Query: 230 ECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 E +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A Sbjct: 62 EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVVVMRQNAETA 120 Query: 290 YQTLGCAGMARVDVFLTPENEVVINEI 316 ++ +G G++R D F T + E+ +NE+ Sbjct: 121 FRAIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAA13259.1| (AJ232256) D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 203 bits (516), Expect = 3e-51 Identities = 62/147 (42%), Positives = 97/147 (65%), Gaps = 1/147 (0%) Query: 170 SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 AEVE KL P+F KP+N GSSVG+SK ++E+ A++LAF++D +V+VEQG+ REI Sbjct: 2 KIAEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQALELAFQYDSRVLVEQGVNAREI 61 Query: 230 ECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 E +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A Sbjct: 62 EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETA 120 Query: 290 YQTLGCAGMARVDVFLTPENEVVINEI 316 ++ +G G++R D F T + E+ +NE+ Sbjct: 121 FRAIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAB64496.1| (AJ387983) D-alanine--D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 203 bits (516), Expect = 3e-51 Identities = 62/147 (42%), Positives = 96/147 (65%), Gaps = 1/147 (0%) Query: 170 SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 AEVE KL P+F KP+N GSSVG+SK ++E+ A++LAF++D +V+VEQG+ REI Sbjct: 2 KIAEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALELAFQYDSRVLVEQGVNAREI 61 Query: 230 ECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 E +LGN + +++ GE+V FY YD KYID + + +PA I ++ +R A A Sbjct: 62 EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKIGDDVVAVMRQNAETA 120 Query: 290 YQTLGCAGMARVDVFLTPENEVVINEI 316 ++ +G G++R D F T + E+ +NE+ Sbjct: 121 FRAIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAB16964.1| (Z99839) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB16967.1| (Z99842) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17002.1| (Z99877) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17026.1| (Z99901) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAA13268.1| (AJ232265) D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 203 bits (516), Expect = 3e-51 Identities = 62/147 (42%), Positives = 95/147 (64%), Gaps = 1/147 (0%) Query: 170 SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 AEVE KL P+F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REI Sbjct: 2 KIAEVEEKLVYPVFTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREI 61 Query: 230 ECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 E +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A Sbjct: 62 EVGLLGNSDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETA 120 Query: 290 YQTLGCAGMARVDVFLTPENEVVINEI 316 ++ +G G++R D F T + E+ +NE+ Sbjct: 121 FRAIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAA13246.1| (AJ232243) D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 203 bits (516), Expect = 3e-51 Identities = 62/147 (42%), Positives = 96/147 (65%), Gaps = 1/147 (0%) Query: 170 SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 AEVE KL P+F KP+N GSSVG+SK ++E+ A+ LAF++D +V+VEQG+ REI Sbjct: 2 KIAEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKLAFQYDSRVLVEQGVNAREI 61 Query: 230 ECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 E +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A Sbjct: 62 EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETA 120 Query: 290 YQTLGCAGMARVDVFLTPENEVVINEI 316 ++ +G G++R D F T + E+ +NE+ Sbjct: 121 FRAIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAB16966.1| (Z99841) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB16968.1| (Z99843) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17021.1| (Z99896) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17025.1| (Z99900) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAA13251.1| (AJ232248) D-alanine D-alanine ligase [Streptococcus pneumoniae] emb|CAA13254.1| (AJ232251) D-alanine D-alanine ligase [Streptococcus pneumoniae] emb|CAA13260.1| (AJ232257) D-alanine D-alanine ligase [Streptococcus pneumoniae] emb|CAA13274.1| (AJ232271) D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 203 bits (516), Expect = 3e-51 Identities = 62/147 (42%), Positives = 96/147 (65%), Gaps = 1/147 (0%) Query: 170 SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 AEVE KL P+F KP+N GSSVG+SK ++E+ A++LAF +D +V+VEQG+ REI Sbjct: 2 KIAEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQALELAFRYDSRVLVEQGVNAREI 61 Query: 230 ECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 E +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A Sbjct: 62 EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETA 120 Query: 290 YQTLGCAGMARVDVFLTPENEVVINEI 316 ++ +G G++R D F T + E+ +NE+ Sbjct: 121 FRAIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAB64497.1| (AJ387984) D-alanine--D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 202 bits (515), Expect = 3e-51 Identities = 62/147 (42%), Positives = 95/147 (64%), Gaps = 1/147 (0%) Query: 170 SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 AEVE KL P+F KP+N GSSVG+SK ++E+ A+ LAF++D +V+VEQG+ REI Sbjct: 2 KIAEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKLAFQYDSRVLVEQGVNAREI 61 Query: 230 ECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 E +LGN + +++ GE+V FY YD KYID + + +PA I ++ +R A A Sbjct: 62 EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKIGDDVVAVMRQNAETA 120 Query: 290 YQTLGCAGMARVDVFLTPENEVVINEI 316 ++ +G G++R D F T + E+ +NE+ Sbjct: 121 FRAIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAB60642.1| (AJ252529) D-ala,D-ala ligase [Streptococcus pneumoniae] emb|CAB64491.1| (AJ387978) D-alanine--D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 202 bits (515), Expect = 3e-51 Identities = 62/147 (42%), Positives = 95/147 (64%), Gaps = 1/147 (0%) Query: 170 SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 AEVE KL P+F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REI Sbjct: 2 KIAEVEEKLAYPVFTKPSNMGSSVGISKAENQEELRQALKLAFRYDSRVLVEQGVNAREI 61 Query: 230 ECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 E +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A Sbjct: 62 EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETA 120 Query: 290 YQTLGCAGMARVDVFLTPENEVVINEI 316 ++ +G G++R D F T + E+ +NE+ Sbjct: 121 FRAIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAA13253.1| (AJ232250) D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 202 bits (515), Expect = 3e-51 Identities = 63/147 (42%), Positives = 95/147 (63%), Gaps = 1/147 (0%) Query: 170 SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 AEVE KL P+F KP+N GSSVG+SK ++E+ A+ LAF++D +V+VEQG+ REI Sbjct: 2 KIAEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKLAFQYDSRVLVEQGVNAREI 61 Query: 230 ECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 E +LGN + +++ GE+V FY YD KYID + + +PA I+ E+ +R A A Sbjct: 62 EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKISMDIPANISDEVIAVMRRNAETA 120 Query: 290 YQTLGCAGMARVDVFLTPENEVVINEI 316 ++ +G G++R D F T E+ +NE+ Sbjct: 121 FRAIGGLGLSRCDFFYTDTGEIFLNEL 147 >emb|CAB16962.1| (Z99837) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB16969.1| (Z99844) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB16970.1| (Z99845) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17003.1| (Z99878) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17018.1| (Z99893) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17019.1| (Z99894) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAA13248.1| (AJ232245) D-alanine D-alanine ligase [Streptococcus pneumoniae] emb|CAA13257.1| (AJ232254) D-alanine D-alanine ligase [Streptococcus pneumoniae] emb|CAA13263.1| (AJ232260) D-alanine D-alanine ligase [Streptococcus pneumoniae] emb|CAA13270.1| (AJ232267) D-alanine D-alanine ligase [Streptococcus pneumoniae] emb|CAA13271.1| (AJ232268) D-alanine D-alanine ligase [Streptococcus pneumoniae] emb|CAA13275.1| (AJ232272) D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 202 bits (515), Expect = 4e-51 Identities = 62/147 (42%), Positives = 95/147 (64%), Gaps = 1/147 (0%) Query: 170 SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 AEVE KL P+F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REI Sbjct: 2 KIAEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREI 61 Query: 230 ECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 E +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A Sbjct: 62 EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETA 120 Query: 290 YQTLGCAGMARVDVFLTPENEVVINEI 316 ++ +G G++R D F T + E+ +NE+ Sbjct: 121 FRAIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAB60641.1| (AJ252528) D-ala,D-ala ligase [Streptococcus pneumoniae] emb|CAB64490.1| (AJ387977) D-alanine--D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 202 bits (514), Expect = 5e-51 Identities = 62/147 (42%), Positives = 96/147 (65%), Gaps = 1/147 (0%) Query: 170 SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 AEVE KL P+F KP+N GSSVG+SK ++E+ A++LAF +D +V+VEQG+ REI Sbjct: 2 KIAEVEEKLVYPVFTKPSNMGSSVGISKSENQEELRQALELAFRYDSRVLVEQGVNAREI 61 Query: 230 ECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 E +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A Sbjct: 62 EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETA 120 Query: 290 YQTLGCAGMARVDVFLTPENEVVINEI 316 ++ +G G++R D F T + E+ +NE+ Sbjct: 121 FRAIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAA13262.1| (AJ232259) D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 202 bits (514), Expect = 5e-51 Identities = 62/147 (42%), Positives = 96/147 (65%), Gaps = 1/147 (0%) Query: 170 SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 AEVE KL P+F KP+N GSSVG+SK ++E+ A++LAF +D +V+VEQG+ REI Sbjct: 2 KIAEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQALELAFRYDSRVLVEQGVNAREI 61 Query: 230 ECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 E +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A Sbjct: 62 EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKVTMDIPAKISDDVVAVMRQNAETA 120 Query: 290 YQTLGCAGMARVDVFLTPENEVVINEI 316 ++ +G G++R D F T + E+ +NE+ Sbjct: 121 FRAIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAB16963.1| (Z99838) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAA13249.1| (AJ232246) D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 202 bits (514), Expect = 5e-51 Identities = 62/147 (42%), Positives = 95/147 (64%), Gaps = 1/147 (0%) Query: 170 SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 AEVE KL P+F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REI Sbjct: 2 KIAEVEEKLVYPVFTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREI 61 Query: 230 ECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 E +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A Sbjct: 62 EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETA 120 Query: 290 YQTLGCAGMARVDVFLTPENEVVINEI 316 ++ +G G++R D F T + E+ +NE+ Sbjct: 121 FRAIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAA13581.1| (AJ233888) D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 146 Score = 202 bits (514), Expect = 5e-51 Identities = 62/146 (42%), Positives = 95/146 (64%), Gaps = 1/146 (0%) Query: 170 SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 AEVE KL P+F KP+N GSSVG+SK ++E+ A++LAF +D +V+VEQG+ REI Sbjct: 2 KIAEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQALELAFRYDSRVLVEQGVNAREI 61 Query: 230 ECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 E +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A Sbjct: 62 EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETA 120 Query: 290 YQTLGCAGMARVDVFLTPENEVVINE 315 ++ +G G++R D F T + E+ +NE Sbjct: 121 FRAIGGLGLSRCDFFYTDKGEIFLNE 146 >emb|CAB16971.1| (Z99846) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB16972.1| (Z99847) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB16973.1| (Z99848) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB16974.1| (Z99849) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB16975.1| (Z99850) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB16976.1| (Z99851) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB16977.1| (Z99852) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB16978.1| (Z99853) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB16979.1| (Z99854) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB16980.1| (Z99855) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB16981.1| (Z99856) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB16983.1| (Z99858) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB16984.1| (Z99859) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB16985.1| (Z99860) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB16986.1| (Z99861) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB16987.1| (Z99862) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB16988.1| (Z99863) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17004.1| (Z99879) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17006.1| (Z99881) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17007.1| (Z99882) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17008.1| (Z99883) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17009.1| (Z99884) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17010.1| (Z99885) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17011.1| (Z99886) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17012.1| (Z99887) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17013.1| (Z99888) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17014.1| (Z99889) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17015.1| (Z99890) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17017.1| (Z99892) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17020.1| (Z99895) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17022.1| (Z99897) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17023.1| (Z99898) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17024.1| (Z99899) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAA13244.1| (AJ232241) D-alanine D-alanine ligase [Streptococcus pneumoniae] emb|CAA13250.1| (AJ232247) D-alanine D-alanine ligase [Streptococcus pneumoniae] emb|CAA13258.1| (AJ232255) D-alanine D-alanine ligase [Streptococcus pneumoniae] emb|CAA13272.1| (AJ232269) D-alanine D-alanine ligase [Streptococcus pneumoniae] emb|CAA13273.1| (AJ232270) D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 202 bits (514), Expect = 5e-51 Identities = 62/147 (42%), Positives = 95/147 (64%), Gaps = 1/147 (0%) Query: 170 SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 AEVE KL P+F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REI Sbjct: 2 KIAEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREI 61 Query: 230 ECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 E +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A Sbjct: 62 EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKVTMDIPAKISDDVVAVMRQNAETA 120 Query: 290 YQTLGCAGMARVDVFLTPENEVVINEI 316 ++ +G G++R D F T + E+ +NE+ Sbjct: 121 FRAIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAA13580.1| (AJ233887) D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 146 Score = 202 bits (514), Expect = 5e-51 Identities = 62/146 (42%), Positives = 94/146 (63%), Gaps = 1/146 (0%) Query: 170 SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 AEVE KL P+F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REI Sbjct: 2 KIAEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREI 61 Query: 230 ECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 E +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A Sbjct: 62 EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETA 120 Query: 290 YQTLGCAGMARVDVFLTPENEVVINE 315 ++ +G G++R D F T + E+ +NE Sbjct: 121 FRAIGGLGLSRCDFFYTDKGEIFLNE 146 >emb|CAB60640.1| (AJ252527) D-ala,D-ala ligase [Streptococcus pneumoniae] emb|CAB64489.1| (AJ387976) D-alanine--D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 201 bits (513), Expect = 6e-51 Identities = 62/147 (42%), Positives = 95/147 (64%), Gaps = 1/147 (0%) Query: 170 SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 AEVE KL P+F KP+N GSSVG+SK ++E+ A++LAF +D +V+VEQG+ REI Sbjct: 2 KIAEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQALELAFRYDSRVLVEQGVNAREI 61 Query: 230 ECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 E +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A Sbjct: 62 EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETA 120 Query: 290 YQTLGCAGMARVDVFLTPENEVVINEI 316 ++ +G G++R D F T E+ +NE+ Sbjct: 121 FRAIGGLGLSRCDFFYTDRGEIFLNEL 147 >emb|CAA13276.1| (AJ232273) D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 201 bits (512), Expect = 8e-51 Identities = 62/147 (42%), Positives = 95/147 (64%), Gaps = 1/147 (0%) Query: 170 SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 AEVE KL P+F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REI Sbjct: 2 KIAEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREI 61 Query: 230 ECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 E +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A Sbjct: 62 EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKVTMDIPAKISDDVVAVMRQNAEAA 120 Query: 290 YQTLGCAGMARVDVFLTPENEVVINEI 316 ++ +G G++R D F T + E+ +NE+ Sbjct: 121 FRAIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAA13252.1| (AJ232249) D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 201 bits (512), Expect = 9e-51 Identities = 62/147 (42%), Positives = 95/147 (64%), Gaps = 1/147 (0%) Query: 170 SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 AEVE KL P+F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REI Sbjct: 2 KIAEVEEKLAYPVFAKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREI 61 Query: 230 ECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 E +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A Sbjct: 62 EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETA 120 Query: 290 YQTLGCAGMARVDVFLTPENEVVINEI 316 ++ +G G++R D F T + E+ +NE+ Sbjct: 121 FRAIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAB16982.1| (Z99857) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17005.1| (Z99880) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17027.1| (Z99902) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAA13265.1| (AJ232262) D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 201 bits (511), Expect = 1e-50 Identities = 61/147 (41%), Positives = 95/147 (64%), Gaps = 1/147 (0%) Query: 170 SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 AEVE KL P+F KP+N GSSVG+S+ ++E+ A+ LAF +D +V+VEQG+ REI Sbjct: 2 KIAEVEEKLAYPVFTKPSNMGSSVGISRSENQEELRQALKLAFRYDSRVLVEQGVNAREI 61 Query: 230 ECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 E +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A Sbjct: 62 EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKVTMDIPAKISDDVVAVMRQNAETA 120 Query: 290 YQTLGCAGMARVDVFLTPENEVVINEI 316 ++ +G G++R D F T + E+ +NE+ Sbjct: 121 FRAIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAB16965.1| (Z99840) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAB17016.1| (Z99891) D-alanine:D-alanine ligase [Streptococcus pneumoniae] emb|CAA13264.1| (AJ232261) D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 200 bits (510), Expect = 1e-50 Identities = 62/147 (42%), Positives = 95/147 (64%), Gaps = 1/147 (0%) Query: 170 SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 AEVE KL P+F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REI Sbjct: 2 KIAEVEEKLVYPVFTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREI 61 Query: 230 ECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 E +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A Sbjct: 62 EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAEIA 120 Query: 290 YQTLGCAGMARVDVFLTPENEVVINEI 316 ++ +G G++R D F T + E+ +NE+ Sbjct: 121 FRAIGGLGLSRCDFFYTDKGEIFLNEL 147 >emb|CAB60644.1| (AJ252531) D-ala,D-ala ligase [Streptococcus pneumoniae] emb|CAB64499.1| (AJ387986) D-alanine--D-alanine ligase [Streptococcus pneumoniae] Length = 147 Score = 199 bits (506), Expect = 4e-50 Identities = 62/147 (42%), Positives = 96/147 (65%), Gaps = 1/147 (0%) Query: 170 SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 AEVE KL P+F KP+N GSSVG+SK ++E+ A+ LAF++D +V+VEQG+ REI Sbjct: 2 KIAEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKLAFQYDSRVLVEQGVNAREI 61 Query: 230 ECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 E +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A Sbjct: 62 EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETA 120 Query: 290 YQTLGCAGMARVDVFLTPENEVVINEI 316 ++ +G G++R D F T + E+ +NE+ Sbjct: 121 FRAIGGLGLSRCDFFYTDKEEIFLNEL 147 >emb|CAA13579.1| (AJ233886) D-alanine D-alanine ligase [Streptococcus pneumoniae] Length = 146 Score = 198 bits (505), Expect = 6e-50 Identities = 62/146 (42%), Positives = 95/146 (64%), Gaps = 1/146 (0%) Query: 170 SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 AEVE KL P+F KP+N GSSVG+SK ++E+ A+ LAF++D +V+VEQG+ REI Sbjct: 2 KIAEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKLAFQYDSRVLVEQGVNAREI 61 Query: 230 ECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 E +LGN + +++ GE+V FY YD KYID + + +PA I+ ++ +R A A Sbjct: 62 EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYID-NKITMDIPAKISDDVVAVMRQNAETA 120 Query: 290 YQTLGCAGMARVDVFLTPENEVVINE 315 ++ +G G++R D F T + E+ +NE Sbjct: 121 FRAIGGLGLSRCDFFYTDKEEIFLNE 146 >gb|AAC83823.1| (AF098802) putative D-alanine:D-alanine ligase [Paenibacillus popilliae] Length = 158 Score = 188 bits (479), Expect = 5e-47 Identities = 64/155 (41%), Positives = 94/155 (60%), Gaps = 4/155 (2%) Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRHNISFAEVESKLGL 180 P+VG+ VLAS+ MDK + K + AGL + R V+++LG Sbjct: 5 RFPYVGAGVLASSVGMDKAIMKHVFAHAGLPQCKYEHFLRREWDQNQAEILDRVQTELGY 64 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P FVKPAN GSSVG+SK + + A++LA ++D K+IVE+ + RE+E +VLGND PQ Sbjct: 65 PCFVKPANLGSSVGISKARNAAELKQAIELALQYDRKIIVEEFVDAREVEVSVLGNDEPQ 124 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIA 275 AS GEI+ +++FY Y KYID +++ +PA + Sbjct: 125 ASIPGEIISSNEFYDYKAKYID-GKSQIAIPAPLD 158 >gb|AAD20832.1| (AF125320) D-alanine:D-alanine ligase B homolog [Bartonella bacilliformis] Length = 172 Score = 184 bits (468), Expect = 1e-45 Identities = 59/172 (34%), Positives = 98/172 (56%), Gaps = 9/172 (5%) Query: 184 VKPANQGSSVGVSKVTSEEQYA--IAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 +KP +GSS GV V S+E ++ + +D +++VE+ + GRE+ CAVLG++ Sbjct: 1 IKPIREGSSFGVVIVGSDETMPLHDIMNNEWVYDDEIMVEKYVPGRELTCAVLGDEVLDV 60 Query: 242 STCGEIVLTS--DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 EIV FY YD+KY G+ + PA ++ I ++ +++ A+Q +GC G++ Sbjct: 61 C---EIVPKECFQFYDYDSKY-KSGGSLHICPAKLSSNIYQNVQRMSLAAHQAIGCRGVS 116 Query: 300 RVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 R D E E++ EINT PG T+ S+ P + +ASG Y D++ ++E A Sbjct: 117 RSDFRFNEETGELIWLEINTQPGMTSTSLVPDIAKASGRTYGDIVKWIVEDA 168 >gb|AAF37346.1|AF170807_1 (AF170807) D-alanine:D-alanine ligase [Enterococcus raffinosus] Length = 125 Score = 181 bits (461), Expect = 7e-45 Identities = 55/126 (43%), Positives = 82/126 (64%), Gaps = 1/126 (0%) Query: 191 SSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTCGEIVLT 250 SSVG+++ + E+ A+ A+ +D + +VEQGI REIE AVLGND+ + + GEIV Sbjct: 1 SSVGITRAENREELQNALQEAYRYDSRALVEQGIDAREIEVAVLGNDDVRTTLPGEIVKE 60 Query: 251 SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENE 310 FY Y+ KYID + ++ +PA I E+ K R A AY LG +G++R+D FLT +NE Sbjct: 61 EAFYDYNAKYID-NTIQMAIPANIPEEVMQKARDYAKSAYTMLGGSGLSRIDFFLTNKNE 119 Query: 311 VVINEI 316 + +NE+ Sbjct: 120 LFLNEL 125 >sp|P35660|DDL_ANACE D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||PQ0272 D-alanine--D-alanine ligase (EC 6.3.2.4) - Anaplasma centrale (fragment) gb|AAA22065.1| (M80425) D-alanine:D-alanine ligase [Anaplasma centrale] Length = 205 Score = 156 bits (396), Expect = 3e-37 Identities = 57/230 (24%), Positives = 97/230 (41%), Gaps = 48/230 (20%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 L + ++ GG S E EVSL K I DA+ + ++ ++++ Sbjct: 13 LSIAVLCGGSSPEREVSLAGGKRIADALGRLGHRAAVVDLNRE----------------- 55 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 HQL+ D+++ +HG GEDG G+L + Sbjct: 56 -------------------SAHQLLAM-------APDLVYNALHGGQGEDGCASGLLDIL 89 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 L + S V AS+ MDK +TK +L+ G++ F LT+ + + P Sbjct: 90 GLAYTHSRVAASSVGMDKVLTKHVLKSLGIDFPEFSVLTKEEVLSAK-----EVMPYPFV 144 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAV 233 +KP GS++GV + S +Y A + +++VE+ I G+E+ AV Sbjct: 145 IKPICGGSTIGVHAIFSRSEYLDLSVHADALEGRMLVEEYIPGQEVHTAV 194 >gb|AAB49635.1| (U72705) vancomycin resistance protein [Enterococcus casseliflavus] Length = 126 Score = 153 bits (388), Expect = 2e-36 Identities = 45/125 (36%), Positives = 63/125 (50%) Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + LP+VG V ASA CM+K + + G+ AP I LT G Sbjct: 1 ELMKLPYVGCGVAASALCMNKWLLHQAAEAIGVQSAPTILLTNQANQQDQIEAFIQTHGF 60 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+F KP GSS G++KVT E+ A A+ AF + V++++ I G EI C +LGND+ Sbjct: 61 PVFFKPNEAGSSKGITKVTCVEEIASALKEAFTYCSAVLLQKNIAGVEIGCGILGNDSLT 120 Query: 241 ASTCG 245 C Sbjct: 121 VGACD 125 >sp|Q92233|PUR6_CRYNE PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE (AIR CARBOXYLASE) (AIRC) Length = 582 Score = 151 bits (381), Expect = 1e-35 Identities = 55/208 (26%), Positives = 84/208 (39%), Gaps = 14/208 (6%) Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 L V +K K+ L + G+ +APF L AN F + +LGL Sbjct: 90 EKEGLCEVQPSPKTIRLIQNKYDQKKYLAEKGVAVAPFEELP-ANPTEEDFKAIAGRLGL 148 Query: 181 PLFVKP---ANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 PL +K A G K TS E L F D + E G E AV+ Sbjct: 149 PLMLKAKTLAYDGRGNSPLKSTSSEDIQA--SLKFLGDRPLYAE-GWAPFVKEVAVMVVR 205 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 N + GE+ + A +T + + + P +N + R +A +A L AG Sbjct: 206 NKE----GEV---QSYDAVETIHRESILRVCLAPLRGERGVNQRARELAEKAVGHLEGAG 258 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNI 325 + V++FL P+ E+++NEI P + Sbjct: 259 IFGVEMFLMPDGELLLNEIAPRPHNSGH 286 >gb|AAB09711.1| (U70673) phosphoribosylaminoimidazole carboxylase [Filobasidiella neoformans] Length = 583 Score = 151 bits (381), Expect = 1e-35 Identities = 55/208 (26%), Positives = 84/208 (39%), Gaps = 14/208 (6%) Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 L V +K K+ L + G+ +APF L AN F + +LGL Sbjct: 91 EKEGLCEVQPSPKTIRLIQNKYDQKKYLAEKGVAVAPFEELP-ANPTEEDFKAIAGRLGL 149 Query: 181 PLFVKP---ANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 PL +K A G K TS E L F D + E G E AV+ Sbjct: 150 PLMLKAKTLAYDGRGNSPLKSTSSEDIQA--SLKFLGDRPLYAE-GWAPFVKEVAVMVVR 206 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 N + GE+ + A +T + + + P +N + R +A +A L AG Sbjct: 207 NKE----GEV---QSYDAVETIHRESILRVCLAPLRGERGVNQRARELAEKAVGHLEGAG 259 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNI 325 + V++FL P+ E+++NEI P + Sbjct: 260 IFGVEMFLMPDGELLLNEIAPRPHNSGH 287 >gb|AAB49637.1| (U72706) vancomycin resistance protein [Enterococcus flavescens] Length = 123 Score = 150 bits (380), Expect = 2e-35 Identities = 44/123 (35%), Positives = 61/123 (48%) Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 LP+VG V SA CM+K + + G+ AP I LT G P+ Sbjct: 1 MKLPYVGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGFPV 60 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 F KP GSS G++KVT E+ A A+ AF + V++++ I G EI C +LGND+ Sbjct: 61 FFKPNEAGSSKGITKVTCVEEIASALKEAFTYCSAVLLQKNIAGVEIGCGILGNDSLTVG 120 Query: 243 TCG 245 C Sbjct: 121 ACD 123 >gb|AAC98316.1| (AF112302) phosphoribosylaminoimidazole carboxylase [Filobasidiella neoformans] Length = 582 Score = 150 bits (379), Expect = 2e-35 Identities = 53/206 (25%), Positives = 83/206 (39%), Gaps = 10/206 (4%) Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 L V +K K+ L + G+ +APF L AN F + +LGL Sbjct: 90 EKEGLCEVQPSPKTIRLIQNKYDQKKYLAERGVAVAPFEELP-ANPTEEDFKAIAGRLGL 148 Query: 181 PLFVKPANQG-SSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 PL +K G S + S I L F D + E G E AV+ N Sbjct: 149 PLMLKAKTLAYDGRGNSPLKSASSEDIQASLKFLGDRPLYAE-GWAPFVKEVAVMVVRNK 207 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 + GE+ + A +T + + + P +N + R +A +A L AG+ Sbjct: 208 E----GEV---QSYDAVETIHRESILRVCLTPLRGEKGVNQRARELAEKAVGHLEGAGIF 260 Query: 300 RVDVFLTPENEVVINEINTLPGFTNI 325 V++FL P+ E+++NEI P + Sbjct: 261 GVEMFLMPDGELLLNEIAPRPHNSGH 286 >gb|AAF37345.1|AF170806_1 (AF170806) D-alanine:D-alanine ligase [Enterococcus mundtii] Length = 105 Score = 145 bits (366), Expect = 7e-34 Identities = 43/106 (40%), Positives = 67/106 (62%), Gaps = 1/106 (0%) Query: 191 SSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTCGEIVLT 250 SSVG++K + E+ A+ A+++D + IVEQGI+ REIE AVLGN++ + + GE+V Sbjct: 1 SSVGITKAENREELQNALATAYQYDSRAIVEQGIEAREIEVAVLGNEDVRTTLPGEVVKD 60 Query: 251 SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 FY YD KYI + ++ +PA + E++ K + A AY LG + Sbjct: 61 VAFYDYDAKYI-NNRIEMQIPAEVPEEVHQKAQEYAKLAYTMLGGS 105 >gb|AAB62172.1| (U94524) vancomycin resistance protein C2 [Enterococcus casseliflavus] Length = 119 Score = 141 bits (356), Expect = 1e-32 Identities = 42/118 (35%), Positives = 59/118 (49%) Query: 130 SDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQ 189 V ASA CM+K + + G+ AP I LT + G P+F KP Sbjct: 1 CGVAASALCMNKWLLHQAAATIGVQSAPTILLTNQDNQQQQIEAFIQTHGFPVFFKPNEA 60 Query: 190 GSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTCGEI 247 GSS G++KVT E+ A A+ AF + V++++ I G EI C +LGND+ C I Sbjct: 61 GSSKGITKVTCVEEIAPALKEAFAYCSAVLLQKNIAGVEIGCGILGNDSLTVGACDAI 118 >gb|AAB62173.1| (U94525) vancomycin resistance protein C2 [Enterococcus casseliflavus] Length = 122 Score = 140 bits (354), Expect = 2e-32 Identities = 42/122 (34%), Positives = 58/122 (47%) Query: 130 SDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQ 189 V SA CM+K + + G+ AP I LT G P+F KP Sbjct: 1 CGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGFPVFFKPNEA 60 Query: 190 GSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTCGEIVL 249 GSS G++KVT E+ A A+ AF + V++++ I G EI C +LGND+ C I L Sbjct: 61 GSSKGITKVTCVEEIASALKEAFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGACDAISL 120 Query: 250 TS 251 Sbjct: 121 VD 122 >gb|AAB62171.1| (U94523) vancomycin resistance protein C2 [Enterococcus casseliflavus] Length = 120 Score = 140 bits (353), Expect = 3e-32 Identities = 42/120 (35%), Positives = 58/120 (48%) Query: 130 SDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQ 189 V SA CM+K + + G+ AP I LT G P+F KP Sbjct: 1 CGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGFPVFFKPNEA 60 Query: 190 GSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTCGEIVL 249 GSS G++KVT E+ A A+ AF + V++++ I G EI C +LGND+ C I L Sbjct: 61 GSSKGITKVTCVEEIASALKEAFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGACDAISL 120 >gb|AAB62170.1| (U94522) vancomycin resistance protein C2 [Enterococcus casseliflavus] Length = 117 Score = 136 bits (343), Expect = 4e-31 Identities = 40/116 (34%), Positives = 56/116 (47%) Query: 130 SDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQ 189 V SA CM+K + + G+ AP I LT G P+F KP Sbjct: 1 CGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGFPVFFKPNEA 60 Query: 190 GSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTCG 245 GSS G++KVT E+ A A+ AF + V++++ I G EI C +LGND+ C Sbjct: 61 GSSKGITKVTCVEEIASALKKAFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGACD 116 >gb|AAB62169.1| (U94521) vancomycin resistance protein C2 [Enterococcus casseliflavus] Length = 117 Score = 135 bits (341), Expect = 6e-31 Identities = 40/116 (34%), Positives = 56/116 (47%) Query: 130 SDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQ 189 V ASA CM+K + + G+ AP I L G P+F KP Sbjct: 1 CGVAASALCMNKWLLHQAAAAIGVQSAPTILLINQANQQEQIEAFIQTHGFPVFFKPNEA 60 Query: 190 GSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTCG 245 GSS G++KVT E+ A A+ AF + V++++ I G EI C +LGND+ C Sbjct: 61 GSSKGITKVTCVEEIASALKEAFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGACD 116 >emb|CAC35262.1| (AJ290360) D-alanin-D-alanin ligase [Campylobacter jejuni] Length = 160 Score = 135 bits (341), Expect = 7e-31 Identities = 41/167 (24%), Positives = 76/167 (44%), Gaps = 8/167 (4%) Query: 128 VGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187 +G + AS +K++TK + G+ + L + KL P +KPA Sbjct: 1 IGPRLEASVLSFNKELTKLYAKSVGVKTLDYTMLRKNQNSK-------EKLSFPCIIKPA 53 Query: 188 NQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGNDNPQASTCGE 246 GSS+G+S V E+ A D+ FEFD+ ++VE+ +E A ++ + E Sbjct: 54 RLGSSIGISIVKDEKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIE 113 Query: 247 IVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 +F ++ KY+ G ++ A ++ E+ +K++ + Y L Sbjct: 114 EPKKKEFLDFEQKYLSFSGHNELIEADLSEELKEKLKDSFKKIYNPL 160 >emb|CAC35256.1| (AJ290354) D-alanin-D-alanin ligase [Campylobacter jejuni] emb|CAC35264.1| (AJ290362) D-alanin-D-alanin ligase [Campylobacter jejuni] Length = 160 Score = 135 bits (340), Expect = 7e-31 Identities = 40/167 (23%), Positives = 76/167 (44%), Gaps = 8/167 (4%) Query: 128 VGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187 +G + AS +K++TK + G+ + + + KL P +KPA Sbjct: 1 IGPRLEASVLSFNKELTKLYAKSVGVKTLDYTMVRKGQNSK-------EKLSFPCIIKPA 53 Query: 188 NQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGNDNPQASTCGE 246 GSS+G+S V E+ A D+ FEFD+ ++VE+ +E A ++ + E Sbjct: 54 RLGSSIGISIVKDEKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIE 113 Query: 247 IVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 +F ++ KY+ G ++ A ++ E+ +K++ + Y L Sbjct: 114 EPKKKEFLDFEQKYLSFSGHNELIEANLSEELKEKLKDSFKKIYNPL 160 >emb|CAC35254.1| (AJ290352) D-alanin-D-alanin ligase [Campylobacter jejuni] emb|CAC35257.1| (AJ290355) D-alanin-D-alanin ligase [Campylobacter jejuni] Length = 160 Score = 135 bits (340), Expect = 8e-31 Identities = 41/167 (24%), Positives = 76/167 (44%), Gaps = 8/167 (4%) Query: 128 VGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187 +G + AS +K++TK + G+ + L + KL P +KPA Sbjct: 1 IGPRLEASVLSFNKELTKLYAKSVGVKTLDYTMLRKNQNSK-------EKLNFPCIIKPA 53 Query: 188 NQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGNDNPQASTCGE 246 GSS+G+S V E+ A D+ FEFD+ ++VE+ +E A ++ + E Sbjct: 54 RLGSSIGISIVKDEKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIE 113 Query: 247 IVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 +F ++ KY+ G ++ A ++ E+ +K++ + Y L Sbjct: 114 EPKKKEFLDFEQKYLSFSGHNELIEADLSEELKEKLKDSFKKIYNPL 160 >emb|CAC35255.1| (AJ290353) D-alanin-D-alanin ligase [Campylobacter jejuni] Length = 160 Score = 135 bits (340), Expect = 9e-31 Identities = 41/167 (24%), Positives = 76/167 (44%), Gaps = 8/167 (4%) Query: 128 VGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187 +G + AS +K++TK + G+ + L + KL P +KPA Sbjct: 1 IGPRLEASVLSFNKELTKLYAKSVGVKTLDYTILRKNQNSK-------EKLSFPCIIKPA 53 Query: 188 NQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGNDNPQASTCGE 246 GSS+G+S V E+ A D+ FEFD+ ++VE+ +E A ++ + E Sbjct: 54 RLGSSIGISIVKDEKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIE 113 Query: 247 IVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 +F ++ KY+ G ++ A ++ E+ +K++ + Y L Sbjct: 114 EPKKKEFLDFEQKYLSFSGHNELIEADLSEELKEKLKDSFKKIYNPL 160 >emb|CAC35265.1| (AJ290363) D-alanin-D-alanin ligase [Campylobacter jejuni] Length = 160 Score = 134 bits (339), Expect = 9e-31 Identities = 41/167 (24%), Positives = 76/167 (44%), Gaps = 8/167 (4%) Query: 128 VGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187 +G + AS +K++TK + G+ + L + KL P +KPA Sbjct: 1 IGPRLEASVLSFNKELTKLYAKSVGVKTLDYTMLRKNQNSK-------EKLSFPCIIKPA 53 Query: 188 NQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGNDNPQASTCGE 246 GSS+G+S V E+ A D+ FEFD+ ++VE+ +E A ++ + E Sbjct: 54 RLGSSIGISIVKDEKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIE 113 Query: 247 IVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 +F ++ KY+ G ++ A ++ E+ +K++ + Y L Sbjct: 114 EPKKKEFLDFEQKYLSFSGHNELIEANLSEELKEKLKDSFKKIYNPL 160 >emb|CAC35258.1| (AJ290356) D-alanin-D-alanin ligase [Campylobacter jejuni] Length = 160 Score = 134 bits (339), Expect = 9e-31 Identities = 41/167 (24%), Positives = 76/167 (44%), Gaps = 8/167 (4%) Query: 128 VGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187 +G + AS +K++TK + G+ + L + KL P +KPA Sbjct: 1 IGPRLEASVLSFNKELTKLYAKSVGVKTLDYTMLRKNQNSK-------EKLSFPCIIKPA 53 Query: 188 NQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGNDNPQASTCGE 246 GSS+G+S V E+ A D+ FEFD+ ++VE+ +E A ++ + E Sbjct: 54 RLGSSIGISIVKDEKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIE 113 Query: 247 IVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 +F ++ KY+ G ++ A ++ E+ +K++ + Y L Sbjct: 114 EPKKKEFLDFEQKYLSFSGHNELIEADLSKELKEKLKDSFKKIYNPL 160 >emb|CAC35260.1| (AJ290358) D-alanin-D-alanin ligase [Campylobacter jejuni] Length = 160 Score = 134 bits (338), Expect = 1e-30 Identities = 41/167 (24%), Positives = 76/167 (44%), Gaps = 8/167 (4%) Query: 128 VGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187 +G + AS +K++TK + G+ + L + KL P +KPA Sbjct: 1 IGPRLEASVLSFNKELTKLYAKSVGVKTLDYTMLRKNQNSK-------EKLNFPCIIKPA 53 Query: 188 NQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGNDNPQASTCGE 246 GSS+G+S V E+ A D+ FEFD+ ++VE+ +E A ++ + E Sbjct: 54 RLGSSIGISIVKDEKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIE 113 Query: 247 IVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 +F ++ KY+ G ++ A ++ E+ +K++ + Y L Sbjct: 114 EPKKKEFLDFEQKYLSFSGHNELIEANLSEELKEKLKDSFKKIYNPL 160 >emb|CAC35259.1| (AJ290357) D-alanin-D-alanin ligase [Campylobacter jejuni] Length = 160 Score = 133 bits (336), Expect = 2e-30 Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 8/167 (4%) Query: 128 VGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187 +G + AS +K++TK + G+ + L + KL P +KPA Sbjct: 1 IGPRLEASVLSFNKELTKLYAKSVGVKTLDYTMLRKNQNSK-------EKLNFPCIIKPA 53 Query: 188 NQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGNDNPQASTCGE 246 GSS+G+S V E+ A D+ FEFD+ ++VE +E A ++ + E Sbjct: 54 RLGSSIGISIVKDEKDLEYAKDVGFEFDNDLVVEDFKNNIKEYNLAGCMINDEFVFSIIE 113 Query: 247 IVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 +F ++ KY+ G ++ A ++ E+ +K++ + Y L Sbjct: 114 EPKKKEFLDFEQKYLSFSGHNELIEADLSEELKEKLKDSFKKIYNPL 160 >ref|NP_171808.1| (NC_003070) putative 3-methylcrotonyl-CoA carboxylase [Arabidopsis thaliana] gb|AAL50065.1| (AY070723) At1g03090/F10O3_8 [Arabidopsis thaliana] Length = 734 Score = 133 bits (336), Expect = 2e-30 Identities = 50/226 (22%), Positives = 95/226 (41%), Gaps = 27/226 (11%) Query: 107 HGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR 166 +G L E + + L F+G A DK +KR++ AG+ + P + Sbjct: 118 YGFLSESSDFAQLCEDSGLTFIGPPASAIRDMGDKSASKRIMGAAGVPLVPG---YHGHE 174 Query: 167 HNISFAEVE-SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV-----DLAFEFD-HKVI 219 +I + E K+G P+ +KP + G G+ V S + +A + + A F + ++ Sbjct: 175 QDIDHMKSEAEKIGYPIIIKPTHGGGGKGMRIVQSGKDFADSFLGAQREAAASFGVNTIL 234 Query: 220 VEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEI 278 +E+ I + R IE + G+ + + Y+ + + ++ A AP I Sbjct: 235 LEKYITRPRHIEVQIFGDKHGNVL-----------HLYERDCSVQRRHQKIIEEAPAPNI 283 Query: 279 NDKIR----AIAVQAYQTLGCAGMARVDVFL-TPENEVVINEINTL 319 ++K R AV A + +G V+ + T ++ E+NT Sbjct: 284 SEKFRANLGQAAVSAARAVGYYNAGTVEFIVDTESDQFYFMEMNTR 329 >emb|CAC35261.1| (AJ290359) D-alanin-D-alanin ligase [Campylobacter jejuni] Length = 160 Score = 132 bits (332), Expect = 6e-30 Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 8/167 (4%) Query: 128 VGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187 +G + AS +K++TK + G+ + L + KL P +KPA Sbjct: 1 IGPRLEASILSFNKELTKLYAKSVGVKTLDYTMLRKNQNSK-------EKLNFPCIIKPA 53 Query: 188 NQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGNDNPQASTCGE 246 GSS+G+S V E+ A D+ FEFD+ ++VE+ +E A ++ + E Sbjct: 54 RLGSSIGISIVKDEKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIE 113 Query: 247 IVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 +F ++ KY+ G ++ A ++ E+ +K+ + Y L Sbjct: 114 EPKKKEFLDFEQKYLSFSGHNELIEADLSEELKEKLEDSFKKIYNPL 160 >emb|CAC35263.1| (AJ290361) D-alanin-D-alanin ligase [Campylobacter jejuni] Length = 160 Score = 131 bits (331), Expect = 9e-30 Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 8/167 (4%) Query: 128 VGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187 +G + AS +K++TK + G+ L + KL P +KPA Sbjct: 1 IGPRLEASVLSFNKELTKLYAKSVGVKTLDCTMLRKNQNSK-------EKLNFPCIIKPA 53 Query: 188 NQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGNDNPQASTCGE 246 GSS+G+S V E+ A D+ FEFD+ ++VE+ +E A ++ + E Sbjct: 54 RLGSSIGISIVKDEKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIE 113 Query: 247 IVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 +F ++ KY+ G ++ A ++ E+ +K++ + Y L Sbjct: 114 EPKKKEFLDFEQKYLSFSGHNELIEADLSEELKEKLKDSFKKIYNPL 160 >dbj|BAB64425.1| (AB070701) vancomycin resistance protein C-2 [Enterococcus casseliflavus] Length = 115 Score = 131 bits (330), Expect = 1e-29 Identities = 41/114 (35%), Positives = 60/114 (51%), Gaps = 1/114 (0%) Query: 173 EVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECA 232 G P+F KP GSS G++KVT E+ A A+ AF + V++++ I G EI C Sbjct: 1 AFIQTHGFPVFFKPNEAGSSKGITKVTCVEEIAPALKEAFAYCSAVLLQKNIAGVEIGCG 60 Query: 233 VLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIA 286 +LGND+ C I L F+ Y+ KY AK+ VPA + I +++ A Sbjct: 61 ILGNDSLTVGACDAISLVDGFFDYEEKY-QLISAKITVPAPLPETIETRVKEQA 113 >dbj|BAB64428.1| (AB070704) vancomycin resistance protein C-2 [Enterococcus casseliflavus] Length = 115 Score = 131 bits (329), Expect = 1e-29 Identities = 42/114 (36%), Positives = 60/114 (51%), Gaps = 1/114 (0%) Query: 173 EVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECA 232 G P+F KP GSS G++KVT E+ A A+ AF + V++++ I G EI C Sbjct: 1 AFIQTHGFPVFFKPNEAGSSKGITKVTCVEEIAPALKEAFAYCSAVLLQKNIAGVEIGCG 60 Query: 233 VLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIA 286 +LGND+ C I L F+ Y+ KY AK+ VPA + I K++ A Sbjct: 61 ILGNDSLTVGACDAISLVDGFFDYEEKY-QLISAKITVPAPLPETIETKVKEQA 113 >dbj|BAB64420.1| (AB070696) vancomycin resistance protein C-2 [Enterococcus casseliflavus] dbj|BAB64421.1| (AB070697) vancomycin resistance protein C-2 [Enterococcus casseliflavus] dbj|BAB64424.1| (AB070700) vancomycin resistance protein C-2 [Enterococcus casseliflavus] dbj|BAB64429.1| (AB070705) vancomycin resistance protein C-2 [Enterococcus casseliflavus] Length = 115 Score = 129 bits (324), Expect = 5e-29 Identities = 41/114 (35%), Positives = 60/114 (51%), Gaps = 1/114 (0%) Query: 173 EVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECA 232 G P+F KP GSS G++KVT E+ A A+ AF + V++++ I G EI C Sbjct: 1 AFIQTHGFPVFFKPNEAGSSKGITKVTCVEEIAPALKEAFAYCSAVLLQKNIAGVEIGCG 60 Query: 233 VLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIA 286 +LGND+ C I L F+ ++ KY AK+ VPA + I K++ A Sbjct: 61 ILGNDSLTVGACDAISLVDGFFDFEEKY-QLISAKITVPAPLPETIETKVKEQA 113 >dbj|BAB64426.1| (AB070702) vancomycin resistance protein C-2 [Enterococcus casseliflavus] Length = 115 Score = 128 bits (322), Expect = 9e-29 Identities = 41/114 (35%), Positives = 60/114 (51%), Gaps = 1/114 (0%) Query: 173 EVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECA 232 G P+F KP GSS G++KVT E+ A A+ AF + V++++ I G EI C Sbjct: 1 AFIQTHGFPVFFKPNEAGSSKGITKVTCVEEIAPALKEAFAYCSAVLLQKNIAGVEIGCG 60 Query: 233 VLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIA 286 +LGND+ C I L F+ ++ KY AK+ VPA + I K++ A Sbjct: 61 ILGNDSLTVGACDAISLVYGFFDFEEKY-QLISAKITVPAPLPETIETKVKEQA 113 >dbj|BAB64423.1| (AB070699) vancomycin resistance protein C-2 [Enterococcus casseliflavus] Length = 115 Score = 127 bits (321), Expect = 1e-28 Identities = 41/114 (35%), Positives = 60/114 (51%), Gaps = 1/114 (0%) Query: 173 EVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECA 232 G P+F KP GSS G++KVT E+ A A+ AF + V++++ I G EI C Sbjct: 1 AFIQTHGFPVFFKPNEAGSSKGITKVTCVEEIAPALKEAFAYCSAVLLQKNIAGVEIGCG 60 Query: 233 VLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIA 286 +LGND+ C I L F+ ++ KY AK+ VPA + I K++ A Sbjct: 61 ILGNDSLTVGACDAISLVEGFFDFEEKY-QLISAKITVPAPLPETIETKVKEQA 113 >dbj|BAA99407.1| (AB029826) 3-methylcrotonyl-CoA carboxylase biotin-containing subunit [Homo sapiens] gb|AAG53095.1|AF310972_1 (AF310972) 3-methylcrotonyl-CoA carboxylase alpha subunit [Homo sapiens] Length = 725 Score = 127 bits (320), Expect = 2e-28 Identities = 40/223 (17%), Positives = 88/223 (38%), Gaps = 24/223 (10%) Query: 108 GTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRH 167 G L E+ + + + F+G A K +K ++ AG+ + ++ Sbjct: 130 GFLSENMEFAELCKQEGIIFIGPPPSAIRDMGIKSTSKSIMAAAGVPVVEG--YHGEDQS 187 Query: 168 NISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEF------DHKVIVE 221 + E ++G P+ +K G G+ V SE+++ ++ A D +++E Sbjct: 188 DQCLKEHARRIGYPVMIKAVRGGGGKGMRIVRSEQEFQEQLESARREAKKSFNDDAMLIE 247 Query: 222 QGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEIND 280 + + R +E V G+ + + Y ++ + + ++ A AP I Sbjct: 248 KFVDTPRHVEVQVFGDHHG-----------NAVYLFERDCSVQRRHQKIIEEAPAPGIKS 296 Query: 281 KIR----AIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTL 319 ++R AV+A + + G V+ + ++ E+NT Sbjct: 297 EVRKKLGEAAVRAAKAVNYVGAGTVEFIMDSKHNFCFMEMNTR 339 >ref|NP_064551.2| (NM_020166) methylcrotonoyl-Coenzyme A carboxylase 1 (alpha); 3-methylcrotonyl-CoA carboxylase biotin-containing subunit [Homo sapiens] dbj|BAB14377.1| (AK023051) unnamed protein product [Homo sapiens] gb|AAG50245.1|AF310339_1 (AF310339) 3-methylcrotonyl-CoA carboxylase alpha subunit [Homo sapiens] gb|AAH04187.1|AAH04187 (BC004187) methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [Homo sapiens] gb|AAH04214.1|AAH04214 (BC004214) methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [Homo sapiens] Length = 725 Score = 127 bits (320), Expect = 2e-28 Identities = 40/223 (17%), Positives = 88/223 (38%), Gaps = 24/223 (10%) Query: 108 GTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRH 167 G L E+ + + + F+G A K +K ++ AG+ + ++ Sbjct: 130 GFLSENMEFAELCKQEGIIFIGPPPSAIRDMGIKSTSKSIMAAAGVPVVEG--YHGEDQS 187 Query: 168 NISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEF------DHKVIVE 221 + E ++G P+ +K G G+ V SE+++ ++ A D +++E Sbjct: 188 DQCLKEHARRIGYPVMIKAVRGGGGKGMRIVRSEQEFQEQLESARREAKKSFNDDAMLIE 247 Query: 222 QGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEIND 280 + + R +E V G+ + + Y ++ + + ++ A AP I Sbjct: 248 KFVDTPRHVEVQVFGDHHG-----------NAVYLFERDCSVQRRHQKIIEEAPAPGIKS 296 Query: 281 KIR----AIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTL 319 ++R AV+A + + G V+ + ++ E+NT Sbjct: 297 EVRKKLGEAAVRAAKAVNYVGAGTVEFIMDSKHNFCFMEMNTR 339 >gb|AAK67986.1|AF297332_1 (AF297332) 3-methylcrotonyl-CoA carboxylase biotin-containing subunit [Homo sapiens] Length = 725 Score = 127 bits (320), Expect = 2e-28 Identities = 40/223 (17%), Positives = 88/223 (38%), Gaps = 24/223 (10%) Query: 108 GTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRH 167 G L E+ + + + F+G A K +K ++ AG+ + ++ Sbjct: 130 GFLSENMEFAELCKQEGIIFIGPPPSAIRDMGIKSTSKSIMAAAGVPVVEG--YHGEDQS 187 Query: 168 NISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEF------DHKVIVE 221 + E ++G P+ +K G G+ V SE+++ ++ A D +++E Sbjct: 188 DQCLKEHARRIGYPVMIKAVRGGGGKGMRIVRSEQEFQEQLESARREAKKSFNDDAMLIE 247 Query: 222 QGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEIND 280 + + R +E V G+ + + Y ++ + + ++ A AP I Sbjct: 248 KFVDTPRHVEVQVFGDHHG-----------NAVYLFERDCSVQRRHQKIIEEAPAPGIKS 296 Query: 281 KIR----AIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTL 319 ++R AV+A + + G V+ + ++ E+NT Sbjct: 297 EVRKKLGEAAVRAAKAVNYVGAGTVEFIMDSKHNFCFMEMNTR 339 >ref|NP_539980.1| (NC_003317) BIOTIN CARBOXYLASE [Brucella melitensis] gb|AAL52244.1| (AE009546) BIOTIN CARBOXYLASE [Brucella melitensis] Length = 459 Score = 126 bits (317), Expect = 4e-28 Identities = 47/224 (20%), Positives = 81/224 (35%), Gaps = 25/224 (11%) Query: 107 HGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR 166 +G L E+ +L ++ F+G DK KR + G+ + P Sbjct: 89 YGFLSENAKFAEILEAHDITFIGPTASHIRIMGDKIEAKRTAKRLGIPVVPGS--DGGVT 146 Query: 167 HNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFE------FDHKVIV 220 + A + ++G P+ +K + G G+ S E+ IA+ A D V + Sbjct: 147 DEVEAARIAKEIGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAGAAFGDDAVYI 206 Query: 221 EQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEIN 279 E+ ++ R IE V+G+ A GE + + V +P +N Sbjct: 207 EKYLEKPRHIEVQVMGDGAGNAVHLGE-----------RDCSLQRRHQKVWEEGNSPALN 255 Query: 280 DKIRA----IAVQAYQTLGCAGMARVDVFLTPENEVVINEINTL 319 + R I A LG G ++ + E E+NT Sbjct: 256 AEAREKIGMICANACAELGYRGAGTIEFLY-EDGEFYFIEMNTR 298 >dbj|BAB64422.1| (AB070698) vancomycin resistance protein C-2 [Enterococcus casseliflavus] dbj|BAB64427.1| (AB070703) vancomycin resistance protein C-2 [Enterococcus casseliflavus] Length = 115 Score = 126 bits (316), Expect = 5e-28 Identities = 40/114 (35%), Positives = 59/114 (51%), Gaps = 1/114 (0%) Query: 173 EVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECA 232 P+F KP GSS G++KVT E+ A A+ AF + V++++ I G EI C Sbjct: 1 AFIQTHDFPVFFKPNEAGSSKGITKVTCVEEIAPALKEAFAYCSAVLLQKNIAGVEIGCG 60 Query: 233 VLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIA 286 +LGND+ C I L F+ ++ KY AK+ VPA + I K++ A Sbjct: 61 ILGNDSLTVGACDAISLVEGFFDFEEKY-QLISAKITVPAPLPETIETKVKEQA 113 >ref|NP_076133.1| (NM_023644) methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [Mus musculus] gb|AAG50244.1|AF310338_1 (AF310338) 3-methylcrotonyl-CoA carboxylase alpha subunit [Mus musculus] Length = 717 Score = 119 bits (298), Expect = 6e-26 Identities = 49/307 (15%), Positives = 111/307 (35%), Gaps = 24/307 (7%) Query: 24 AKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKH 83 +I + +R ++ I + V + Y + H+ + A S+ P + Sbjct: 42 GGSITKVLIANRGEIACRVIRTAKKMGVQSVAVYSEADRNSMHVDMADEAYSIGPAPSQQ 101 Query: 84 EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + ++ + +G L E+ + + + F+G A K Sbjct: 102 SYLAMEKIIQVAKSSAAQAIHPGYGFLSENMEFAELCKQEGIIFIGPPSSAIRDMGIKST 161 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 +K ++ AG+ + ++ + E K+G P+ +K G G+ V SE + Sbjct: 162 SKSIMAAAGVPVVEG--YHGKDQSDQCLREHAGKIGYPVMIKAVRGGGGKGMRIVRSERE 219 Query: 204 YAIAVDLAFEF------DHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 + ++ A D +++E+ + R +E V G+ + + Y + Sbjct: 220 FQEQLESARREAKKSFNDDAMLIEKFVDTPRHVEVQVFGDHHG-----------NAVYLF 268 Query: 257 DTKYIDEDGAKVVVPA----AIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVV 312 + + + ++ I PE+ K+ AV+A + + G V+ + + Sbjct: 269 ERDCSVQRRHQKIIEEAPAPGINPEVRRKLGEAAVRAAKAVKYVGAGTVEFIMDSRHNFY 328 Query: 313 INEINTL 319 E+NT Sbjct: 329 FMEMNTR 335 >dbj|BAB25253.1| (AK007782) putative [Mus musculus] Length = 717 Score = 118 bits (297), Expect = 7e-26 Identities = 49/307 (15%), Positives = 111/307 (35%), Gaps = 24/307 (7%) Query: 24 AKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKH 83 +I + +R ++ I + V + Y + H+ + A S+ P + Sbjct: 42 GGSITKVLIANRGEIACRVIRTAKKMGVQSVAVYSEADRNSMHVDMADEAYSIGPAPSQQ 101 Query: 84 EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + ++ + +G L E+ + + + F+G A K Sbjct: 102 SYLAMEKIIQVAKSSAAQAIHPGYGFLSENMEFAELCKQEGIIFIGPPSSAIRDMGIKST 161 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 +K ++ AG+ + ++ + E K+G P+ +K G G+ V SE + Sbjct: 162 SKSIMAAAGVPVVEG--YHGKDQSDQCLREHAGKIGYPVMIKAVRGGGGKGMRIVRSERE 219 Query: 204 YAIAVDLAFEF------DHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 + ++ A D +++E+ + R +E V G+ + + Y + Sbjct: 220 FQEQLESARREAKKSFNDDAMLIEKFVDTPRHVEVQVFGDHHG-----------NAVYLF 268 Query: 257 DTKYIDEDGAKVVVPA----AIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVV 312 + + + ++ I PE+ K+ AV+A + + G V+ + + Sbjct: 269 ERDCSVQRRHQKIIEEAPAPGINPEVRRKLGEAAVRAAKAVKYVGAGTVEFIMDSRHNFY 328 Query: 313 INEINTL 319 E+NT Sbjct: 329 FMEMNTR 335 >pir||S62738 D-alanylalanine ligase homolog - Thermotoga maritima (fragment) gb|AAA68950.1| (U27841) unknown [Thermotoga maritima] Length = 128 Score = 117 bits (295), Expect = 1e-25 Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 43/162 (26%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 + +RV ++ GG S E E+SL+S + + A++K ++ + + + Sbjct: 9 KTVRVALLMGGVSREREISLRSGERVKKALEKLGYEHTVFDVRED--------------- 53 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 + L + DV+F ++HGT GEDG+LQ +L Sbjct: 54 ---------------------------FLKKVDQLKSFDVVFNVLHGTFGEDGTLQAILD 86 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR 163 + + GSD +S C DK VT R L+ + I F+ + Sbjct: 87 FLGIRYTGSDAFSSMICFDKLVTYRFLKGT-VEIPDFVEIKE 127 >ref|NP_389706.1| (NC_000964) similar to biotin carboxylase [Bacillus subtilis] pir||E69893 biotin carboxylase homolog yngH - Bacillus subtilis emb|CAA74216.1| (Y13917) yngH [Bacillus subtilis] emb|CAB13707.1| (Z99113) similar to biotin carboxylase [Bacillus subtilis] Length = 444 Score = 116 bits (290), Expect = 5e-25 Identities = 41/224 (18%), Positives = 91/224 (40%), Gaps = 24/224 (10%) Query: 107 HGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR 166 +G L E+ + N+ F+G A K ++ + AG+ + P ++ + + Sbjct: 82 YGLLSENSRFAERCKQENIVFIGPSPDIIAKMGSKIEARKAMEAAGVPVVPGVSESLGDI 141 Query: 167 HNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVD------LAFEFDHKVIV 220 S++G P+ +K + G +G+ +V +EE A + F D + + Sbjct: 142 EAAC--RTASQIGYPVMLKASAGGGGIGMQRVENEEALKKAYEGNKKRAADFFGDGSMYI 199 Query: 221 EQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEIN 279 E+ I+ R IE +L + + + ++ + + V+ A +P ++ Sbjct: 200 EKVIEHARHIEVQLLADQHG-----------HTVHLFERDCSVQRRHQKVIEEAPSPFVD 248 Query: 280 DKIR----AIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTL 319 D++R AV+A + +G ++ + + E+NT Sbjct: 249 DELRMKIGQTAVKAAKAIGYTNAGTIEFIVDQKQNFYFLEMNTR 292 >gb|AAA67356.1| (U12536) 3-methylcrotonyl-CoA carboxylase precursor [Arabidopsis thaliana] Length = 715 Score = 114 bits (286), Expect = 1e-24 Identities = 43/222 (19%), Positives = 85/222 (37%), Gaps = 39/222 (17%) Query: 107 HGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR 166 +G L E + + L F+G A DK +KR++ AG+ + P + Sbjct: 119 YGFLSESSDFAQLCEDSGLTFIGPPASAIRDMGDKSASKRIMGAAGVPLVPG---YHGHE 175 Query: 167 HNISFAEVE-SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV-----DLAFEFD-HKVI 219 +I + E K+G P+ +KP + G G+ V S + +A + + A F + ++ Sbjct: 176 QDIDHMKSEAEKIGYPIIIKPTHGGGGKGMRIVQSGKDFADSFLGAQREAAASFGVNTIL 235 Query: 220 VEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEI 278 +E+ I + R IE + G+ + + Y+ + + ++ A A Sbjct: 236 LEKYITRPRHIEVQIFGDKHGNVL-----------HLYERDCSVQRRHQKIIEEAPA--- 281 Query: 279 NDKIRAIAVQAYQTLGCAGMARVDVFL-TPENEVVINEINTL 319 +G V+ + T ++ E+NT Sbjct: 282 -------------AVGYYNAGTVEFIVDTESDQFYFMEMNTR 310 >ref|NP_484982.1| (NC_003272) biotin carboxylase [Nostoc sp. PCC 7120] sp|Q06862|ACCC_ANASP BIOTIN CARBOXYLASE (A SUBUNIT OF ACETYL-COA CARBOXYLASE (ACC) pir||A53311 biotin carboxylase (EC 6.3.4.14) - Anabaena sp. (strain PCC 7120) gb|AAB51770.1| (L14862) biotin carboxylase [Anabaena sp.] dbj|BAB72896.1| (AP003584) biotin carboxylase [Nostoc sp. PCC 7120] Length = 447 Score = 114 bits (286), Expect = 2e-24 Identities = 44/220 (20%), Positives = 82/220 (37%), Gaps = 16/220 (7%) Query: 107 HGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR 166 +G L E+ + ++ F+G A DK K ++ AG+ P Sbjct: 83 YGFLSENAKFAEICADHHIAFIGPTPEAIRLMGDKSTAKETMQKAGVPTVPGSEGLVETE 142 Query: 167 HNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ-----YAIAVDLAFEFDHK-VIV 220 E+ +G P+ +K G G+ V S ++ A + F + V + Sbjct: 143 QEGL--ELAKDIGYPVMIKATAGGGGRGMRLVRSPDEFVKLFLAAQGEAGAAFGNAGVYI 200 Query: 221 EQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEIN 279 E+ I+ R IE +L ++ GE + K ++E A+ ++ Sbjct: 201 EKFIERPRHIEFQILADNYGNVIHLGER--DCSIQRRNQKLLEE-----APSPALDSDLR 253 Query: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTL 319 +K+ AV+A Q + G ++ L + E+NT Sbjct: 254 EKMGQAAVKAAQFINYTGAGTIEFLLDRSGQFYFMEMNTR 293 >pir||T44813 biotin carboxylase (EC 6.3.4.14) yngH [imported] - Bacillus subtilis gb|AAF08802.1|AF184956_9 (AF184956) YngH [Bacillus subtilis] Length = 444 Score = 113 bits (284), Expect = 2e-24 Identities = 43/224 (19%), Positives = 89/224 (39%), Gaps = 24/224 (10%) Query: 107 HGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR 166 +G L E+ + N+ F+G A K ++ + AG+ + P ++ + + Sbjct: 82 YGLLSENSRFAERCKQENIVFIGPAPDIIAKMGSKIEARKAMEAAGVPVVPGVSESLGDI 141 Query: 167 HNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVD------LAFEFDHKVIV 220 S++G P+ +K + G +G+ V +EE A + F D + + Sbjct: 142 QEAC--RTASQIGYPVMLKASAGGGGIGMQLVQNEEALRKAYEGNKKRAADFFGDGSMYI 199 Query: 221 EQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEIN 279 E+ I+ R IE +L + + ++ + + V+ A +P ++ Sbjct: 200 EKVIEHARHIEVQLLADH-----------FGHTIHLFERDCSVQRRHQKVIEEAPSPFLD 248 Query: 280 DKIR----AIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTL 319 DK+R AV+A + +G ++ + P E+NT Sbjct: 249 DKLRMKIGQTAVKAAKAIGYTNAGTIEFLVDPNQNFYFLEMNTR 292 >ref|NP_442228.1| (NC_000911) biotin carboxylase [Synechocystis sp. PCC 6803] pir||S74380 biotin carboxylase accC - Synechocystis sp. (strain PCC 6803) dbj|BAA10298.1| (D64001) biotin carboxylase [Synechocystis sp. PCC 6803] Length = 448 Score = 113 bits (284), Expect = 3e-24 Identities = 42/220 (19%), Positives = 84/220 (38%), Gaps = 16/220 (7%) Query: 107 HGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR 166 +G L E+ + + F+G A A DK K+ ++ +G+ P Sbjct: 83 YGFLAENARFAEICADHQITFIGPSPEAITAMGDKSTAKKTMQKSGVPCVPGSPGL--IE 140 Query: 167 HNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY-----AIAVDLAFEFDHK-VIV 220 + ++ +++G P+ +K G G+ V E+ + A + F + V + Sbjct: 141 SEATALKIAAEIGYPVIIKATAGGGGRGMRLVQEEKDFLKLFHAAQGEAGAAFGNPGVYL 200 Query: 221 EQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEIN 279 E+ I+ R IE +L + + GE K ++E + + P + Sbjct: 201 EKFIEKPRHIEFQILADSHGNVVHLGER--DCSIQRRHQKLLEEAPSPFLTP-----HLR 253 Query: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTL 319 K+ AV+A +++ G V+ + E+NT Sbjct: 254 KKMGEAAVKAAKSINYVGAGTVEFLVDGNGNFYFMEMNTR 293 >ref|NP_102052.1| (NC_002678) biotin carboxylase [Mesorhizobium loti] dbj|BAB47838.1| (AP002994) biotin carboxylase [Mesorhizobium loti] Length = 447 Score = 113 bits (283), Expect = 3e-24 Identities = 49/232 (21%), Positives = 83/232 (35%), Gaps = 18/232 (7%) Query: 95 PLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLN 154 + D + P +G L E+ +L N+ F+G DK KR + G+ Sbjct: 71 EITGADAVHPG-YGFLSENAKFADILAAHNITFIGPSGDHIRIMGDKIEAKRTAKRLGIP 129 Query: 155 IAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFE- 213 + P + +++G P+ +K + G G+ SE +A+ A Sbjct: 130 VVPGSDGAVTEEKEA--KRIAAEIGYPVIIKASAGGGGRGMKVAHSEADLEVALQTARSE 187 Query: 214 -----FDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAK 267 D V +E+ + K R IE V G+ + GE K +E + Sbjct: 188 AGAAFGDDAVYIEKYLQKPRHIEVQVFGDGFGRGVHFGER--DCSLQRRHQKVWEEANS- 244 Query: 268 VVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTL 319 A+ E +I I +A LG +G ++ E E+NT Sbjct: 245 ----PALNAEERSRIGGICAKAIADLGYSGAGTIEFLY-ENGEFYFIEMNTR 291 >gb|AAF57199.1| (AE003779) CG2118 gene product [Drosophila melanogaster] Length = 684 Score = 113 bits (283), Expect = 3e-24 Identities = 42/225 (18%), Positives = 83/225 (36%), Gaps = 25/225 (11%) Query: 107 HGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR 166 +G L E + + + F+G A K +K ++ AG+ I ++ Sbjct: 107 YGFLSESVEFAELCQREGIIFMGPPSSAIRDMGIKSTSKAIMAAAGVPIING--YHGDDQ 164 Query: 167 HNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFE------FDHKVIV 220 + K+G PL +K G G+ + + A++ A D V++ Sbjct: 165 SDECLQREADKIGFPLMIKAVRGGGGKGMRIAEKPDDFLTALNSARTESEKSFGDSSVLL 224 Query: 221 EQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEIN 279 E+ + R +E V + Y ++ + + ++ A AP ++ Sbjct: 225 ERYVRSPRHVEVQVFADQYG-----------DAVYLWERDCSVQRRHQKIIEEAPAPGLS 273 Query: 280 DKIR----AIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTL 319 + +R AV+A + +G G V+ L E+ E+NT Sbjct: 274 EDLRRELGEAAVRAAKAVGYVGAGTVEFILDKEDLSFHFMEMNTR 318 >ref|NP_251581.1| (NC_002516) probable biotin carboxylase/biotin carboxyl carrier protein [Pseudomonas aeruginosa] pir||F83284 probable biotin carboxylase/biotin carboxyl carrier protein PA2891 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG06279.1|AE004715_5 (AE004715) probable biotin carboxylase/biotin carboxyl carrier protein [Pseudomonas aeruginosa] Length = 661 Score = 112 bits (281), Expect = 5e-24 Identities = 44/224 (19%), Positives = 82/224 (35%), Gaps = 24/224 (10%) Query: 107 HGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR 166 +G L E+ A + F+G D A K ++K + AG+ P A + Sbjct: 84 YGFLSENAEFARACEAAGIVFIGPDAEAIHLMGSKRLSKIAMLAAGVPCIPG--YEGAEQ 141 Query: 167 HNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFE------FDHKVIV 220 + + ++G PL +K + G G+ V Q + A ++I+ Sbjct: 142 DDATLRREAERIGYPLMIKASAGGGGRGMRLVEEPGQLLEQLRTARSEALGAFGSAELIL 201 Query: 221 EQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEIN 279 E+ + + R +E V G+ + GE + + V+ A P ++ Sbjct: 202 ERAVLRPRHVEIQVFGDRHGNLLYLGE-----------RDCSVQRRHQKVIEEAPCPVLD 250 Query: 280 DKIR----AIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTL 319 +R AV+A ++ G V+ L + E+NT Sbjct: 251 ADLRRAMGEAAVKAAASVNYVGAGTVEFLLGEDGRFYFLEMNTR 294 >ref|NP_534077.1| (NC_003305) propionyl-coenzyme A carboxylase, alpha polypeptide [Agrobacterium tumefaciens str. C58 (U. Washington)] gb|AAL44393.1| (AE009288) propionyl-coenzyme A carboxylase, alpha polypeptide [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 677 Score = 112 bits (281), Expect = 5e-24 Identities = 52/251 (20%), Positives = 101/251 (39%), Gaps = 23/251 (9%) Query: 107 HGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR 166 +G L E+ + L A + F+G V A A DK +K+L AG++ P + Sbjct: 92 YGFLSENAAFAQALEKAGVVFIGPPVGAIEAMGDKITSKKLAAKAGVSTVPGHMGLIEDA 151 Query: 167 HNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ----YAIAVDLAFE--FDHKVIV 220 ++ S++G P+ +K + G G+ +E + + + + A D ++ + Sbjct: 152 DEAV--KIASQIGYPVMIKASAGGGGKGMRIAFNEAEAREGFQSSKNEAKSSFGDDRIFI 209 Query: 221 EQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEIN 279 E+ + + R IE VLG+ + GE + + K I+E + + Sbjct: 210 EKFVTQPRHIEIQVLGDKHGTILYLGERECSIQ--RRNQKVIEEAPSPF-----LDEATR 262 Query: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGY 339 + AV + +G V+ + E E+NT + P +G+ Sbjct: 263 HAMGEQAVALARAVGYHSAGTVEFIVDGERNFYFLEMNTRLQVEH----PVTELVTGI-- 316 Query: 340 TDLITRLIELA 350 DL+ ++I +A Sbjct: 317 -DLVEQMIRVA 326 >dbj|BAB01486.1| (AB034950) phosphoribosyl-5-aminoimidazole carboxylase [Candida boidinii] Length = 572 Score = 112 bits (281), Expect = 6e-24 Identities = 53/241 (21%), Positives = 95/241 (38%), Gaps = 32/241 (13%) Query: 115 SLQGMLRVANLP-FVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAE 173 +LQ + LP + L+ DK + K L G+ +A + + + S + Sbjct: 81 ALQKISDSTGLPIYPTPATLS--VIKDKYLQKEHLIKHGIAVAESVAV---ESNEESLLK 135 Query: 174 VESKLGLPLFVKPANQG-SSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECA 232 V + G P +K G V S+++ A++ F D + E+ E A Sbjct: 136 VGEQFGYPFMLKARTLAYDGRGNFVVKSQDKIKEAIE--FLGDRPLYAEK-WAPFTKELA 192 Query: 233 VLGNDNPQASTCGEIVLTSDFYAY---DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 V+ + + Y+Y +T + D V PA + I K + +A A Sbjct: 193 VMVVRSV----------DGNVYSYPTVETIHRDNICHTVFAPARVQDSILKKAQILADNA 242 Query: 290 YQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNI--------SMYPKLWQA-SGLGYT 340 ++ AG+ V++FL P ++++NEI P + S + L +A +GL Sbjct: 243 VKSFDGAGIFGVEMFLLPSGDLLVNEIAPRPHNSGHYTIDACVTSQFEALIRALAGLPMP 302 Query: 341 D 341 D Sbjct: 303 D 303 >gb|AAF32338.1|AF218939_6 (AF218939) acetyl-CoA carboxylase [Bacillus subtilis] Length = 430 Score = 112 bits (280), Expect = 6e-24 Identities = 43/224 (19%), Positives = 90/224 (39%), Gaps = 24/224 (10%) Query: 107 HGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR 166 +G L E+ + N+ F+G A K ++ + +AG+ + P ++ + + Sbjct: 68 YGLLSENSRFAQRCKEENIVFIGPSPAVIAKIGSKIKARKAMEEAGVPVVPGVSESLGDI 127 Query: 167 HNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVD------LAFEFDHKVIV 220 A E +G P+ +K + G +G+ V EE A + F D + + Sbjct: 128 QAACLAASE--IGYPVMLKASAGGGGIGMQLVPDEEALIKAYEGNKKRAADFFGDGSMYI 185 Query: 221 EQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEIN 279 E+ I+ R IE +L + + + ++ + + V+ A +P ++ Sbjct: 186 EKVIEHARHIEIQILADHHG-----------HAVHLFERDCSVQRRHQKVIEEAPSPFVD 234 Query: 280 DKIR----AIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTL 319 D++R AV+A + +G A ++ + E+NT Sbjct: 235 DELRMKIGETAVKAAKAIGYANAGTIEFLVDENKNFYFLEMNTR 278 >ref|NP_357031.1| (NC_003063) AGR_L_580GMp [Agrobacterium tumefaciens] [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAK89816.1| (AE008324) AGR_L_580GMp [Agrobacterium tumefaciens str. C58 (Cereon)] Length = 667 Score = 112 bits (280), Expect = 7e-24 Identities = 52/251 (20%), Positives = 101/251 (39%), Gaps = 23/251 (9%) Query: 107 HGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR 166 +G L E+ + L A + F+G V A A DK +K+L AG++ P + Sbjct: 82 YGFLSENAAFAQALEKAGVVFIGPPVGAIEAMGDKITSKKLAAKAGVSTVPGHMGLIEDA 141 Query: 167 HNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ----YAIAVDLAFE--FDHKVIV 220 ++ S++G P+ +K + G G+ +E + + + + A D ++ + Sbjct: 142 DEAV--KIASQIGYPVMIKASAGGGGKGMRIAFNEAEAREGFQSSKNEAKSSFGDDRIFI 199 Query: 221 EQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEIN 279 E+ + + R IE VLG+ + GE + + K I+E + + Sbjct: 200 EKFVTQPRHIEIQVLGDKHGTILYLGERECSIQ--RRNQKVIEEAPSPF-----LDEATR 252 Query: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGY 339 + AV + +G V+ + E E+NT + P +G+ Sbjct: 253 HAMGEQAVALARAVGYHSAGTVEFIVDGERNFYFLEMNTRLQVEH----PVTELVTGI-- 306 Query: 340 TDLITRLIELA 350 DL+ ++I +A Sbjct: 307 -DLVEQMIRVA 316 >ref|NP_354336.1| (NC_003062) AGR_C_2451p [Agrobacterium tumefaciens] [Agrobacterium tumefaciens str. C58 (Cereon)] ref|NP_532020.1| (NC_003304) acetyl-CoA carboxylase, biotin carboxylase [Agrobacterium tumefaciens str. C58 (U. Washington)] gb|AAK87121.1| (AE008059) AGR_C_2451p [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAL42336.1| (AE009094) acetyl-CoA carboxylase, biotin carboxylase [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 448 Score = 111 bits (279), Expect = 1e-23 Identities = 45/236 (19%), Positives = 82/236 (34%), Gaps = 27/236 (11%) Query: 95 PLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLN 154 + D + P +G L E+ +L + F+G DK K+ ++ G+ Sbjct: 71 EITGADAVHPG-YGFLSENAKFADILDAHGITFIGPTAEHIRIMGDKITAKQTAQELGIP 129 Query: 155 IAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFE- 213 + P + + E+ +G P+ +K G G+ +E AV A Sbjct: 130 VVPG---SDGEVKPENALEIARTIGFPVLIKATAGGGGRGMKVAKTEADLEDAVATARSE 186 Query: 214 -----FDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAK 267 + V +E+ + K R IE V G+ A GE + + Sbjct: 187 AAAAFGNDAVYMEKYLGKPRHIEVQVFGDGEGNAVHLGE-----------RDCSLQRRHQ 235 Query: 268 VVVPAAIAPE--INDKIR--AIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTL 319 V+ A +P + +++ I A + L G ++ E E+NT Sbjct: 236 KVLEEANSPALTVEQRMKIGEICADAMRKLKYRGAGTIEFLY-ENGEFYFIEMNTR 290 >pir||T06360 methylcrotonoyl-CoA carboxylase (EC 6.4.1.4) biotin carboxylase chain - soybean Length = 731 Score = 110 bits (276), Expect = 2e-23 Identities = 45/225 (20%), Positives = 88/225 (39%), Gaps = 25/225 (11%) Query: 107 HGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR 166 +G L E + + L F+G A DK +KR++ AG+ + P + Sbjct: 113 YGFLSESADFAKLCEESGLTFIGPPASAIRDMGDKSASKRIMGAAGVPLVPGYHGYDQDI 172 Query: 167 HNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ-----YAIAVDLAFEFD-HKVIV 220 + ++G P+ +KP + G G+ V + ++ A + A F + +++ Sbjct: 173 EKMKLE--ADRIGYPVLIKPTHGGGGKGMRIVHTPDEFVESFLAAQREAAASFGVNTILL 230 Query: 221 EQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEIN 279 E+ I + R IE + G+ + + Y+ + + ++ A AP I+ Sbjct: 231 EKYITRPRHIEVQIFGDKHGNVL-----------HLYERDCSVQRRHQKIIEEAPAPNIS 279 Query: 280 DKIRA----IAVQAYQTLGCAGMARVDVFLTP-ENEVVINEINTL 319 RA AV A + + V+ + +E E+NT Sbjct: 280 ADFRAQLGVAAVSAAKAVNYYNAGTVEFIVDTVSDEFYFMEMNTR 324 >gb|AAA53140.1| (U08469) 3-methylcrotonyl-CoA carboxylase, biotin-carrier domain [Glycine max] Length = 674 Score = 110 bits (275), Expect = 3e-23 Identities = 45/225 (20%), Positives = 88/225 (39%), Gaps = 25/225 (11%) Query: 107 HGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR 166 +G L E + + L F+G A DK +KR++ AG+ + P + Sbjct: 56 YGFLSESADFAKLCEESGLTFIGPPASAIRDMGDKSASKRIMGAAGVPLVPGYHGYDQDI 115 Query: 167 HNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ-----YAIAVDLAFEFD-HKVIV 220 + ++G P+ +KP + G G+ V + ++ A + A F + +++ Sbjct: 116 EKMKLE--ADRIGYPVLIKPTHGGGGKGMRIVHTPDEFVESFLAAQREAAASFGVNTILL 173 Query: 221 EQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEIN 279 E+ I + R IE + G+ + + Y+ + + ++ A AP I+ Sbjct: 174 EKYITRPRHIEVQIFGDKHGNVL-----------HLYERDCSVQRRHQKIIEEAPAPNIS 222 Query: 280 DKIRA----IAVQAYQTLGCAGMARVDVFLTP-ENEVVINEINTL 319 RA AV A + + V+ + +E E+NT Sbjct: 223 ADFRAQLGVAAVSAAKAVNYYNAGTVEFIVDTVSDEFYFMEMNTR 267 >ref|NP_437988.1| (NC_003078) putative propionyl-CoA carboxylase alpha chain protein [Sinorhizobium meliloti] emb|CAC49848.1| (AL603647) putative propionyl-CoA carboxylase alpha chain protein [Sinorhizobium meliloti] Length = 670 Score = 109 bits (273), Expect = 5e-23 Identities = 53/255 (20%), Positives = 102/255 (39%), Gaps = 31/255 (12%) Query: 107 HGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR 166 +G L E+ + L + F+G V A A DK +K+L +AG+ P + Sbjct: 85 YGFLSENAAFAEALEKDGVTFIGPPVRAIEAMGDKITSKKLAAEAGVFTVPGHMGLIEDA 144 Query: 167 HNISFAEVESKLGLPLFVKPANQGSSVGVSKV----TSEEQYAIAVDLAFE--FDHKVIV 220 A + +++G P+ +K + G G+ + E + + + A D ++ + Sbjct: 145 DEA--ARIAAEIGFPVMIKASAGGGGKGMRIAWNEREAREGFQSSRNEAKSSFGDDRIFI 202 Query: 221 EQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEIN 279 E+ + + R IE VLG+ + GE + + + V+ A +P ++ Sbjct: 203 EKFVTEPRHIEIQVLGDKHGNILYLGE-----------RECSIQRRNQKVIEEAPSPFLD 251 Query: 280 DKIR----AIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQAS 335 +K R AV + +G V+ + E+NT + P + Sbjct: 252 EKTRRAMGEQAVALAKAVGYHSAGTVEFIVDAGRNFYFLEMNTRLQVEH----PVTELVT 307 Query: 336 GLGYTDLITRLIELA 350 GL DL+ ++I +A Sbjct: 308 GL---DLVEQMIRVA 319 >gb|AAD25800.1|AC006550_8 (AC006550) Identical to gb|U12536 3-methylcrotonyl-CoA carboxylase precursor protein from Arabidopsis thaliana. ESTs gb|H35836, gb|AA651295 and gb|AA721862 come from this gene Length = 730 Score = 107 bits (268), Expect = 2e-22 Identities = 44/227 (19%), Positives = 87/227 (37%), Gaps = 33/227 (14%) Query: 107 HGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR 166 +G L E + + L F+G A DK +KR++ AG+ + P + Sbjct: 118 YGFLSESSDFAQLCEDSGLTFIGPPASAIRDMGDKSASKRIMGAAGVPLVPG---YHGHE 174 Query: 167 HNISFAEVE-SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV-----DLAFEFD-HKVI 219 +I + E K+G P+ +KP + G G+ V S + +A + + A F + ++ Sbjct: 175 QDIDHMKSEAEKIGYPIIIKPTHGGGGKGMRIVQSGKDFADSFLGAQREAAASFGVNTIL 234 Query: 220 VEQGI-KGREIECAVLGNDNPQASTCGEIVL---TSD--FYAYDTKYIDEDGAKVVVPAA 273 +E+ I + R IE V+ + E ++ + Y+ + + ++ A Sbjct: 235 LEKYITRPRHIEVQVVSREISCCFFFHERLIFGDKHGNVLHLYERDCSVQRRHQKIIEEA 294 Query: 274 IAPEINDKIRAIAVQAYQTLGCAGMARVDVFL-TPENEVVINEINTL 319 A +G V+ + T ++ E+NT Sbjct: 295 PA----------------AVGYYNAGTVEFIVDTESDQFYFMEMNTR 325 >gb|AAG45427.1|AF317651_4 (AF317651) pyruvate carboxylase ATP-binding subunit PYCA [Methanosarcina barkeri] Length = 493 Score = 106 bits (266), Expect = 3e-22 Identities = 41/224 (18%), Positives = 86/224 (38%), Gaps = 25/224 (11%) Query: 107 HGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR 166 +G L E+ + F+G A K + L+ AG+ + P + Sbjct: 82 YGFLSENPVFAKRCEEEGIVFIGPPSHVIAEMGSKIRARNLMVKAGVPVVPGTKDAVEDP 141 Query: 167 HNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFE------FDHKVIV 220 ++ ++G P+ +K + G +G+ V S +++A A+ + D V + Sbjct: 142 VEAV--KIAEEIGYPVLIKASAGGGGIGMKVVNSSDEFATALSSTRQMAGSAFGDSSVFI 199 Query: 221 EQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIA---- 275 E+ + + R IE +L + + Y D + + + ++ A + Sbjct: 200 EKYVEEPRHIEIQILADGYG-----------NTIYLSDRECSIQRRHQKLIEEAPSPIMT 248 Query: 276 PEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTL 319 PE+ K+ AV+ +T+G V+ + + E+NT Sbjct: 249 PELRAKMGEAAVRVAKTIGYVNAGTVEFLYS-KGNFYFLEVNTR 291 >ref|NP_181305.1| (NC_003071) putative phosphoribosylaminoimidazole carboxylase [Arabidopsis thaliana] pir||T02535 phosphoribosylaminoimidazole carboxylase (EC 4.1.1.21) - Arabidopsis thaliana gb|AAC23639.1| (AC004684) putative phosphoribosylaminoimidazole carboxylase [Arabidopsis thaliana] Length = 645 Score = 106 bits (266), Expect = 3e-22 Identities = 49/239 (20%), Positives = 89/239 (36%), Gaps = 34/239 (14%) Query: 120 LRVANLPFVGSDVLASAACM--DKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK 177 L V AS + DK + K G+ + F+ + +I A + Sbjct: 167 LEKLEKQGVDCQPKASTIRIIQDKYMQKVHFSQHGIPLPEFMEI-----SDIEGARKAGE 221 Query: 178 L-GLPLFVKPANQG-SSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 L G PL +K G + ++++ + AV F + +E+ E AV+ Sbjct: 222 LFGYPLMIKSKRLAYDGRGNAVANNQDELSSAVTALGGFSRGLYIEK-WAPFVKELAVIV 280 Query: 236 ----NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 + + E T + D V PA + +IN +A +A Sbjct: 281 ARGRDGSMVCYPVVE-----------TIHRDNICHIVKAPADVPWKINKLATDVAQKAVG 329 Query: 292 TLGCAGMARVDVFLTPENEVVINEINTLPGFTNI--------SMYPK-LWQASGLGYTD 341 +L AG+ V++FLT ++++++NE+ P + S + + L GL D Sbjct: 330 SLEGAGVFAVELFLTEDSQILLNEVAPRPHNSGHQTIECCYTSQFEQHLRAVVGLPLGD 388 >emb|CAB87214.1| (AL163641) acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces coelicolor A3(2)] Length = 646 Score = 106 bits (266), Expect = 3e-22 Identities = 49/226 (21%), Positives = 85/226 (36%), Gaps = 26/226 (11%) Query: 107 HGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR 166 +G L E+ A L F+G A A DK K +R AG+ + P + + Sbjct: 82 YGFLAENAGFARACEEAGLVFIGPSADAIALMGDKIRAKETVRAAGVPVVPGS--SGSGL 139 Query: 167 HNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFE------FDHKVIV 220 + A+ ++G P+ +KP+ G G+ V A + A D ++V Sbjct: 140 TDEQLADAAREIGTPVLLKPSAGGGGKGMRLVRDTAVLADEIAAARREARASFGDDTLLV 199 Query: 221 EQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAA----IA 275 E+ I R IE VL + + GE + + + V+ A + Sbjct: 200 ERWIDRPRHIEIQVLADGHGGVVHLGE-----------RECSLQRRHQKVIEEAPSVLLD 248 Query: 276 PEINDKIRAIAVQAYQTLGCAGMARVDVFL--TPENEVVINEINTL 319 + AVQA ++ G G V+ + + ++ E+NT Sbjct: 249 EATRAAMGEAAVQAARSCGYRGAGTVEFIVPGSDPSQYYFMEMNTR 294 >ref|NP_250702.1| (NC_002516) probable acyl-CoA carboxylase alpha chain [Pseudomonas aeruginosa] pir||A83395 probable acyl-CoA carboxylase alpha chain PA2012 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG05400.1|AE004627_8 (AE004627) probable acyl-CoA carboxylase alpha chain [Pseudomonas aeruginosa] Length = 655 Score = 106 bits (265), Expect = 3e-22 Identities = 52/225 (23%), Positives = 88/225 (39%), Gaps = 26/225 (11%) Query: 107 HGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR 166 +G L E+ A L F+G A A K K L+ +AG+ + P Sbjct: 88 YGFLSENADFARACEEAGLLFLGPPAAAIDAMGSKSAAKALMEEAGVPLVPG---YHGEA 144 Query: 167 HNI-SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFE------FDHKVI 219 ++ +F ++G P+ +K A G G+ V E + A A+ A D +++ Sbjct: 145 QDLETFRREAGRIGYPVLLKAAAGGGGKGMKVVEREAELAEALSSAQREAKAAFGDARML 204 Query: 220 VEQG-IKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEI 278 VE+ +K R +E V + + Y + + + VV A AP + Sbjct: 205 VEKYLLKPRHVEIQVFADRHGHCL-----------YLNERDCSIQRRHQKVVEEAPAPGL 253 Query: 279 NDKIR----AIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTL 319 ++R AV+A Q +G G V+ L + E+NT Sbjct: 254 GAELRRAMGEAAVRAAQAIGYVGAGTVEFLLDERGQFFFMEMNTR 298 >ref|NP_385425.1| (NC_003047) PROBABLE BIOTIN CARBOXYLASE PROTEIN [Sinorhizobium meliloti] emb|CAC45898.1| (AL591786) PROBABLE BIOTIN CARBOXYLASE PROTEIN [Sinorhizobium meliloti] Length = 449 Score = 106 bits (265), Expect = 4e-22 Identities = 52/272 (19%), Positives = 91/272 (33%), Gaps = 29/272 (10%) Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLP--TVDVIFPIVHGTLGEDGSLQG 118 AD A + P E L Q D + P +G L E+ Sbjct: 37 ADSDAMHVRLADESVCIGPPPSRESYLNIHQIVAACEITGADAVHPG-YGFLSENAKFAD 95 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 +L + F+G DK K+ + G+ + P + + E+ ++ Sbjct: 96 ILDAHGITFIGPTAEHIRLMGDKITAKKTAEELGIPVVPG---SDGEVRPENALEIARQI 152 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFE------FDHKVIVEQGI-KGREIEC 231 G P+ +K G G+ +EE+ AV A + V +E+ + K R IE Sbjct: 153 GFPVLIKATAGGGGRGMKVARTEEELENAVATARSEAAAAFGNDAVYMEKFLGKPRHIEI 212 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAP--EINDKIR--AIAV 287 V+G+ A GE + + V A +P + +++ + Sbjct: 213 QVVGDGEGNAIHLGE-----------RDCSLQRRHQKVWEEANSPALNVEQRMKIGQVCA 261 Query: 288 QAYQTLGCAGMARVDVFLTPENEVVINEINTL 319 A + L G ++ E E+NT Sbjct: 262 DAMKKLKYRGAGTIEFLY-ENGEFYFIEMNTR 292 >gb|AAL48287.1|AF452495_1 (AF452495) aminoimidazole ribonucleotide carboxylase [Vigna unguiculata] Length = 634 Score = 106 bits (264), Expect = 4e-22 Identities = 55/237 (23%), Positives = 88/237 (36%), Gaps = 30/237 (12%) Query: 120 LRVANLPFVGSDVLASAACM--DKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK 177 L V AS + DK K G+ + F+ + S +V Sbjct: 156 LEKLEKQGVDCQPKASTVRIIQDKYQQKVHFSKHGIPLPEFMKI----DDLESAKKVGEL 211 Query: 178 LGLPLFVKPANQG-SSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL-- 234 G PL +K G SEE+ + AVD FD + E+ E AV+ Sbjct: 212 FGYPLMIKSRRLAYDGRGNFVAKSEEELSSAVDALGGFDRGLYAEK-WAPFVKELAVIVA 270 Query: 235 -GNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 G DN + +T + D V PA + + + +AV A ++L Sbjct: 271 RGRDNSISCYPV----------VETIHRDNICHIVKAPANVKWKTRELATEVAVNAVKSL 320 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFT--------NISMYPK-LWQASGLGYTD 341 AG+ V++FLT + E+++NE+ P + + S + + L GL D Sbjct: 321 EGAGVFAVELFLTNDGEILLNEVAPRPHNSGHHTIESCHTSQFEQHLRAVVGLPLGD 377 >ref|NP_187495.1| (NC_003074) hypothetical protein [Arabidopsis thaliana] gb|AAF07839.1|AC010871_15 (AC010871) hypothetical protein [Arabidopsis thaliana] Length = 269 Score = 106 bits (264), Expect = 5e-22 Identities = 41/115 (35%), Positives = 60/115 (51%), Gaps = 8/115 (6%) Query: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDA---GLNIAPF 158 +F VHG +GEDG+LQG+L + + G VLAS CMDK +T + L + G++ Sbjct: 43 VFIAVHGGIGEDGTLQGLLEDEGVSYTGPGVLASRTCMDKVMTSQALSNLSEFGIHTISK 102 Query: 159 ITLTRANRHNISFAEVESKL-----GLPLFVKPANQGSSVGVSKVTSEEQYAIAV 208 + + +F V +L L L VKPA G S GV+++ S E A+ V Sbjct: 103 DVKRTEDIMHETFPNVWDELIKKLQCLTLCVKPAKDGCSTGVARLCSSEDLAVYV 157 >ref|NP_539717.1| (NC_003317) PROPIONYL-COA CARBOXYLASE ALPHA CHAIN, MITOCHONDRIAL [Brucella melitensis] gb|AAL51981.1| (AE009521) PROPIONYL-COA CARBOXYLASE ALPHA CHAIN, MITOCHONDRIAL [Brucella melitensis] Length = 667 Score = 106 bits (264), Expect = 5e-22 Identities = 45/220 (20%), Positives = 85/220 (38%), Gaps = 16/220 (7%) Query: 107 HGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR 166 +G L E+ L+ AN+ F+G V A A DK +K+L +AG++ P + Sbjct: 82 YGFLSENPRFAEALKAANVTFIGPPVNAIDAMGDKITSKKLAAEAGVSTVPGHMGLIEDA 141 Query: 167 HNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFE------FDHKVIV 220 + +G P+ +K + G G+ ++E+ L+ D ++ + Sbjct: 142 DEAV--RIAGSIGYPVMIKASAGGGGKGMRIAWNDEEAREGFQLSRNEAKSSFGDDRIFI 199 Query: 221 EQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEIN 279 E+ + + R IE VLG+ + GE + + K I+E + + Sbjct: 200 EKFVTQPRHIEIQVLGDQHGNVVYLGERECSIQ--RRNQKVIEEAPSPF-----LDEATR 252 Query: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTL 319 + AV + +G V+ + E+NT Sbjct: 253 KAMGEQAVALAKAVGYYSAGTVEFIVDGNRNFYFLEMNTR 292 >ref|NP_471220.1| (NC_003212) phosphoribosylaminoimidazole carboxylase II [Listeria innocua] emb|CAC97116.1| (AL596170) phosphoribosylaminoimidazole carboxylase II [Listeria innocua] Length = 374 Score = 105 bits (263), Expect = 7e-22 Identities = 40/202 (19%), Positives = 75/202 (36%), Gaps = 25/202 (12%) Query: 129 GSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPAN 188 GS++L+ D+ + K L A +NIAP+ + + G P +K A Sbjct: 98 GSELLS--ITQDRILEKAYLESANINIAPYAVIVDKEEIESEIRSI----GYPAVLKTAQ 151 Query: 189 QG-SSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG----NDNPQAST 243 G G + S A L + V+ + E E +V+ N + Sbjct: 152 GGYDGKGQVVIHSASDIEDAAQL-LRYGSCVL--EAWIPFEKEISVIVARNLNGQVETFP 208 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 E V +++ + PA +A ++ ++ IA + L G+ V++ Sbjct: 209 VAENV-----------HVNNILHTTIAPAKVAADVYEEAEEIAKKLADVLQLCGVLAVEM 257 Query: 304 FLTPENEVVINEINTLPGFTNI 325 F+T + +NE+ P + Sbjct: 258 FVTSSGAIYVNELAPRPHNSGH 279 >ref|NP_047031.1| (NC_001905) PCACA; L549.5 [Leishmania major] pir||T02793 propionyl CoA carboxylase (alpha chain) PCACA [imported] - Leishmania major (strain Friedlin) gb|AAC24617.1| (AE001274) PCACA; L549.5 [Leishmania major] Length = 665 Score = 105 bits (263), Expect = 7e-22 Identities = 55/250 (22%), Positives = 100/250 (40%), Gaps = 36/250 (14%) Query: 107 HGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAP-FITLTRAN 165 +G L E+G Q L N+ FVG D + A DK +KRL AG+ P FI + + Sbjct: 86 YGFLSENGEFQAALHKNNIIFVGPDAHSIEAMGDKIESKRLAHSAGVTCIPGFIGEVKTH 145 Query: 166 RHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDL-------AFEFDHKV 218 + FA ++G P+ +K + G G+ ++ Q D+ AF D K+ Sbjct: 146 EDVLKFAR---EVGYPVMIKASGGGGGKGMRVAYNDSQCVEYYDMCREEAKAAFNSD-KM 201 Query: 219 IVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAA---- 273 +VE+ I+ R IE V+ + + Y + + + + V+ A Sbjct: 202 LVEKFIENPRHIEIQVIADRRG-----------NTLYLPERECSIQRRNQKVIEEAPSVL 250 Query: 274 IAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTL--------PGFTNI 325 + + + AV + + V+ + P+ + E+NT T I Sbjct: 251 LDAKTRKAMGEEAVAMARAVQYVSAGTVENVVNPQKQFYFLEMNTRLQVEHPITEEITGI 310 Query: 326 SMYPKLWQAS 335 + ++ +A+ Sbjct: 311 DLVEQMLRAA 320 >ref|NP_241998.1| (NC_002570) biotin carboxylase [Bacillus halodurans] dbj|BAB04851.1| (AP001511) biotin carboxylase [Bacillus halodurans] Length = 452 Score = 105 bits (263), Expect = 7e-22 Identities = 42/224 (18%), Positives = 89/224 (38%), Gaps = 24/224 (10%) Query: 107 HGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR 166 +G L E+ A + F+G K + ++ AG+ + P + A+ Sbjct: 82 YGLLSENARFARACVEAGISFIGPSPEVIERMGSKIAARTAMQTAGVPVIPGSDVALADE 141 Query: 167 HNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV------DLAFEFDHKVIV 220 + K G P+ +K + G +G+ V ++E+ A +F D + + Sbjct: 142 EEAVH--LARKFGYPVMLKASAGGGGIGMQLVRNDEEMRKAFAGNQKRATSFFGDGTMFL 199 Query: 221 EQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAP--- 276 E+ ++ R IE + + + G +V + ++ + + VV A +P Sbjct: 200 EKAVENPRHIEVQIAADHH------GHVV-----HLWERDCSIQRRHQKVVEEAPSPFVD 248 Query: 277 -EINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTL 319 + +KI +AV+A + + + V+ + E + E+NT Sbjct: 249 EALREKIGQLAVKAAKAIDYRNLGTVECLVDGEKNIYFLEMNTR 292 >ref|NP_107983.1| (NC_002678) 3-methylcrotonyl-CoA carboxylase biotin-containing subunit [Mesorhizobium loti] dbj|BAB54128.1| (AP003012) 3-methylcrotonyl-CoA carboxylase biotin-containing subunit [Mesorhizobium loti] Length = 694 Score = 104 bits (261), Expect = 1e-21 Identities = 47/230 (20%), Positives = 90/230 (38%), Gaps = 31/230 (13%) Query: 107 HGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR 166 +G L E+ + A L F+G + A KD KRL+ AG+ + P Sbjct: 122 YGFLSENPDFVDQVVAAGLTFIGPSAASIRAMGLKDAAKRLMEKAGVPVVPG---YHGEA 178 Query: 167 HNISFAEVESK-LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFE------FDHKVI 219 I +++ +G P+ +K G G+ +V + ++ A+ A D +V+ Sbjct: 179 QEIVLLASKAREIGYPVLIKARAGGGGKGMRRVEHPDDFSEALSSARREAKAAFGDDRVL 238 Query: 220 VEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAI---- 274 VE+ + K R IE V G++ + + Y+ + + V+ A Sbjct: 239 VEKYVDKPRHIEVQVFGDN-----------FGNAVHLYERDCSAQRRHQKVIEEAPAPGM 287 Query: 275 APEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE-----NEVVINEINTL 319 P + + AV+A + +G +G ++ + + E+NT Sbjct: 288 TPALRKAMTEAAVKAAKAIGYSGAGTIEFIVDASQGLKPDRFWFMEMNTR 337 >ref|NP_277017.1| (NC_000916) biotin carboxylase [Methanothermobacter thermautotrophicus] sp|O27939|PYCA_METTH PYRUVATE CARBOXYLASE SUBUNIT A (PYRUVIC CARBOXYLASE A) pir||A69123 biotin carboxylase - Methanobacterium thermoautotrophicum (strain Delta H) gb|AAB86377.1| (AE000942) biotin carboxylase [Methanothermobacter thermautotrophicus] Length = 491 Score = 104 bits (260), Expect = 1e-21 Identities = 52/305 (17%), Positives = 110/305 (36%), Gaps = 36/305 (11%) Query: 24 AKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKH 83 A ++ A + V + + + ++ PA + +V K Sbjct: 14 AIRVMRACRELGIKSVAVYSEADKNALFTRYADEAYEIGKPAPSQSYLRIDRILEVAEKA 73 Query: 84 EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + I +G L E+ L + +G A DK Sbjct: 74 GAEAIHPG---------------YGFLAENPRLGEECEKQGIKLIGPKGSVIEAMGDKIT 118 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 +K+L++ AG+ + P ++ A + +G P+ +K + G +G+ V E++ Sbjct: 119 SKKLMKKAGVPVIPGTDQGVSDPDEA--ARIADSIGYPVIIKASAGGGGIGMRAVYEEDE 176 Query: 204 YAIAVD-------LAFEFDHKVIVEQGIK-GREIECAVLGNDNP-QASTCGEIVLTSDFY 254 A++ AF D V +E+ ++ R IE V+ +++ Sbjct: 177 LIRAMESTQSVAASAF-GDPTVYIEKYLERPRHIEFQVMADESGNVIHLADREC---SIQ 232 Query: 255 AYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVIN 314 K I+E + ++ P E+ +++ + AV+A + +G V+ + + Sbjct: 233 RRHQKLIEEAPSPIMTP-----ELRERMGSAAVKAAEYIGYENAGTVEFLYSN-GDFYFL 286 Query: 315 EINTL 319 E+NT Sbjct: 287 EMNTR 291 >ref|NP_009767.1| (NC_001134) Urea amidolyase (contains urea carboxylase and allophanate hydrolase); Dur1,2p [Saccharomyces cerevisiae] sp|P32528|DUR1_YEAST UREA AMIDOLYASE [INCLUDES: UREA CARBOXYLASE ; ALLOPHANATE HYDROLASE ] pir||S46082 urea carboxylase (EC 6.3.4.6) - yeast (Saccharomyces cerevisiae) emb|CAA85172.1| (Z36077) ORF YBR208c [Saccharomyces cerevisiae] Length = 1835 Score = 104 bits (260), Expect = 1e-21 Identities = 50/255 (19%), Positives = 91/255 (35%), Gaps = 31/255 (12%) Query: 107 HGTLGEDGSLQGMLRVANLPFVGSD---VLASAACMDKDVTKRLLRDAGLNIAPFITLTR 163 +G L E+ A + FVG + K +++ + AG+ + P L Sbjct: 713 YGFLSENADFSDACTSAGITFVGPSGDIIRGLGL---KHSARQIAQKAGVPLVPGSLLI- 768 Query: 164 ANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVD------LAFEFDHK 217 +V ++L P+ VK G +G+ KV SEE + F D Sbjct: 769 --TSVEEAKKVAAELEYPVMVKSTAGGGGIGLQKVDSEEDIEHIFETVKHQGETFFGDAG 826 Query: 218 VIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAP 276 V +E+ I+ R +E ++G+ +A GE + ++ + + Sbjct: 827 VFLERFIENARHVEVQLMGDGFGKAIALGER-------DCSLQRRNQKVIEETPAPNLPE 879 Query: 277 EINDKIRAIAVQAYQTLGCAGMARVDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQAS 335 + +R A L V+ ++E E+NT + P + Sbjct: 880 KTRLALRKAAESLGSLLNYKCAGTVEFIYDEKKDEFYFLEVNTRLQVEH----PITEMVT 935 Query: 336 GLGYTDLITRLIELA 350 GL DL+ +I +A Sbjct: 936 GL---DLVEWMIRIA 947 >ref|NP_217017.1| (NC_000962) accA1 [Mycobacterium tuberculosis H37Rv] ref|NP_337066.1| (NC_002755) acetyl/propionyl-CoA carboxylase, alpha subunit [Mycobacterium tuberculosis CDC1551] sp|P46401|BCCA_MYCTU ACETYL-/PROPIONYL-COENZYME A CARBOXYLASE ALPHA CHAIN [INCLUDES: BIOTIN CARBOXYLASE ; BIOTIN CARBOXYL CARRIER PROTEIN (BCCP)] pir||B55579 biotin carboxyl carrier protein - Mycobacterium tuberculosis emb|CAA79609.1| (Z19549) biotin carboxyl carrier protein [Mycobacterium tuberculosis] emb|CAB08919.1| (Z95556) accA1 [Mycobacterium tuberculosis H37Rv] gb|AAK46880.1| (AE007094) acetyl/propionyl-CoA carboxylase, alpha subunit [Mycobacterium tuberculosis CDC1551] Length = 654 Score = 104 bits (260), Expect = 1e-21 Identities = 42/226 (18%), Positives = 84/226 (36%), Gaps = 26/226 (11%) Query: 107 HGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR 166 +G L E+ A + F+G A DK K + + + P + RA Sbjct: 82 YGFLAENADFAAACERARVVFLGPPARAIEVMGDKIAAKNAVAAFDVPVVPGVA--RAGL 139 Query: 167 HNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFE------FDHKVIV 220 + + +++G P+ +KP+ G G+ V + A+ A D + + Sbjct: 140 TDDALVTAAAEVGYPVLIKPSAGGGGKGMRLVQDPARLPEALVSARREAMSSFGDDTLFL 199 Query: 221 EQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAA----IA 275 E+ + + R IE VL + + GE + + + V+ A + Sbjct: 200 ERFVLRPRHIEVQVLADAHGNVVHLGE-----------RECSLQRRHQKVIEEAPSPLLD 248 Query: 276 PEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE--NEVVINEINTL 319 P+ ++I A + + G V+ ++ + +E E+NT Sbjct: 249 PQTRERIGVAACNTARCVDYVGAGTVEFIVSAQRPDEFFFMEMNTR 294 >gb|AAB92588.1| (AF038548) pyruvate carboxylase [Corynebacterium glutamicum] emb|CAA70739.1| (Y09548) pyruvate carboxylase [Corynebacterium glutamicum] Length = 1140 Score = 104 bits (259), Expect = 2e-21 Identities = 55/239 (23%), Positives = 89/239 (37%), Gaps = 26/239 (10%) Query: 92 NGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDA 151 D I+P +G L E+ L + F+G DK + A Sbjct: 79 GAAKKVKADAIYPG-YGFLSENAQLARECAENGITFIGPTPEVLDLTGDKSRAVTAAKKA 137 Query: 152 GLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLA 211 GL + T + + E + P+FVK G G+ V S ++ A Sbjct: 138 GLPVL--AESTPSKNIDEIVKSAEGQ-TYPIFVKAVAGGGGRGMRFVASPDELRKLATEA 194 Query: 212 FE------FDHKVIVEQG-IKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDED 264 D V VE+ I + IE +LG+ GE+V + Y+ + Sbjct: 195 SREAEAAFGDGAVYVERAVINPQHIEVQILGDHT------GEVV-----HLYERDCSLQR 243 Query: 265 GAKVVV---PAA-IAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTL 319 + VV PA + PE+ D+I A AV+ +++G G V+ + + V E+N Sbjct: 244 RHQKVVEIAPAQHLDPELRDRICADAVKFCRSIGYQGAGTVEFLVDEKGNHVFIEMNPR 302 >dbj|BAB16297.1| (AB039884) acetyl-CoA carboxylase biotin carboxylase subunit [Myxococcus xanthus] Length = 573 Score = 103 bits (258), Expect = 2e-21 Identities = 47/220 (21%), Positives = 84/220 (37%), Gaps = 16/220 (7%) Query: 107 HGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR 166 +G L E+ R A L F+G + A +K + AG+ P + + Sbjct: 84 YGFLSENADFARACRDAGLVFIGPEAEAITLMGNKRQANVRMIAAGVPCIPGYEASDLDD 143 Query: 167 HNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFE------FDHKVIV 220 ++ ++G PL VK A G G+ V Q A+ A ++I+ Sbjct: 144 EALAVEG--ERIGFPLMVKAAAGGGGRGMRLVHEASQLRAALRAARSEATNAFGSGELIL 201 Query: 221 EQG-IKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEIN 279 E+ I R +E V + + GE + K ++E A++P + Sbjct: 202 EKAVIDARHVEVQVFADTHGNVVHLGERDCSVQ--RRHQKIVEES-----PSPAVSPALR 254 Query: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTL 319 ++ +AV A + +G G ++ L P + E+NT Sbjct: 255 ARMGEVAVAAARAIGYRGAGTIEFLLAPSGDFYFMEMNTR 294 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: ref|NP_286119.1| (NC_002655) Z0477 gene product [Escherichia col... 398 e-110 ref|NP_454975.1| (NC_003198) D-alanine:D-alanine ligase A [Salmo... 394 e-109 sp|Q47827|DDL_ENTHR D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 364 e-100 gb|AAB17902.2| (U39790) D-alanine:D-alanine ligase [Enterococcus... 363 2e-99 gb|AAG49141.1|AF215736_1 (AF215736) D-alanine:D-alanine ligase [... 359 3e-98 ref|NP_372607.1| (NC_002758) D-alanine-D-alanine ligase [Staphyl... 345 4e-94 ref|NP_388337.1| (NC_000964) D-alanyl-D-alanine ligase A [Bacill... 342 2e-93 emb|CAB64487.1| (AJ243059) D-ala,D-ala ligase [Streptococcus pne... 341 9e-93 ref|NP_346110.1| (NC_003028) D-alanine--D-alanine ligase [Strept... 340 2e-92 sp|O54631|DDL_STRPN D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 339 2e-92 emb|CAB64471.1| (AJ243055) D-ala,D-ala ligase [Streptococcus pne... 339 3e-92 emb|CAB64475.1| (AJ243056) D-ala,D-ala ligase [Streptococcus pne... 339 3e-92 emb|CAB64459.1| (AJ243052) D-ala,D-ala ligase [Streptococcus pne... 337 7e-92 ref|NP_359108.1| (NC_003098) D-alanine-D-alanine ligase [Strepto... 337 7e-92 emb|CAB64463.1| (AJ243053) D-ala,D-ala ligase [Streptococcus pne... 337 9e-92 emb|CAB64483.1| (AJ243058) D-ala,D-ala ligase [Streptococcus pne... 337 1e-91 gb|AAF36803.1|AF155139_2 (AF155139) putative D-alanyl-D-alanine ... 336 2e-91 sp|P25051|VANA_ENTFC VANCOMYCIN/TEICOPLANIN A-TYPE RESISTANCE PR... 336 2e-91 emb|CAB61227.1| (Y15704) vana protein [Bacillus circulans] 335 4e-91 ref|NP_266497.1| (NC_002662) D-alanine-D-alanine ligase (EC 6.3.... 334 5e-91 sp|Q06893|VANB_ENTFC VANCOMYCIN B-TYPE RESISTANCE PROTEIN VANB (... 334 1e-90 pdb|1E4E|A Chain A, D-Alanyl-D-Lacate Ligase 334 1e-90 emb|CAB63849.1| (AJ243051) D-ala,D-ala ligase [Streptococcus pne... 333 1e-90 pdb|1E4E|B Chain B, D-Alanyl-D-Lacate Ligase 332 3e-90 gb|AAG37026.1|AF277571_3 (AF277571) D-alanine:D-lactate ligase [... 332 4e-90 ref|NP_269512.1| (NC_002737) putative D-ala,D-ala ligase [Strept... 331 5e-90 sp|Q47758|DDL_ENTFA D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 331 7e-90 gb|AAF72363.1|AF192329_24 (AF192329) VanB [Enterococcus faecalis] 331 7e-90 gb|AAC43218.1| (U00457) D-alanine:D-alanine ligase-related prote... 329 2e-89 pir||T35363 D-alanine--D-alanine ligase (EC 6.3.2.4) A SC66T3.06... 329 3e-89 ref|NP_464381.1| (NC_003210) D-alanine--D-alanine ligase [Lister... 328 6e-89 emb|CAB05883.1| (Z83305) D-alanine:D-alanine ligase-related prot... 328 6e-89 ref|NP_485023.1| (NC_003272) D-alanyl-D-alanine ligase [Nostoc s... 327 7e-89 gb|AAG34685.1|AF310955_1 (AF310955) ligase VanB2 [Enterococcus f... 327 9e-89 gb|AAF71281.1|AF253562_5 (AF253562) ligase [Enterococcus faecalis] 326 2e-88 gb|AAG34683.1|AF310953_1 (AF310953) ligase VanB2 [Enterococcus f... 325 3e-88 gb|AAG34684.1|AF310954_1 (AF310954) ligase VanB2 [Enterococcus f... 325 4e-88 ref|NP_470190.1| (NC_003212) D-alanine--D-alanine ligase [Lister... 325 5e-88 gb|AAD42184.1|AF130997_5 (AF130997) D-alanine:D-lactate ligase [... 324 1e-87 ref|NP_103309.1| (NC_002678) D-alanine-D-alanine ligase A [Mesor... 322 3e-87 gb|AAD41882.1|AF153050_3 (AF153050) D-alanine:D-lactate ligase [... 320 1e-86 ref|NP_349497.1| (NC_003030) D-alanine-D-alanine ligase [Clostri... 319 2e-86 ref|NP_294085.1| (NC_001263) D-alanine--D-alanine ligase [Deinoc... 317 1e-85 gb|AAC23582.1| (U82965) D-alanine:D-alanine ligase-related prote... 315 4e-85 gb|AAD51060.1|AF175293_5 (AF175293) D-alanine:D-lactate ligase [... 315 5e-85 sp|Q9ZGN0|DDL_MYCSM D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 313 1e-84 gb|AAD19835.1| (AF060799) D-alanyl-D-alanine ligase [Amycolatops... 311 1e-83 sp|P29753|VANC_ENTGA VANCOMYCIN C-TYPE RESISTANCE PROTEIN VANC (... 309 4e-83 sp|Q47823|DDL_ENTGA D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 308 6e-83 ref|NP_302152.1| (NC_002677) D-alanine-D-alanine ligase A [Mycob... 307 8e-83 ref|NP_440997.1| (NC_000911) D-alanine:D-alanine ligase-related ... 307 1e-82 ref|NP_220281.1| (NC_000117) UDP-N-acetylmuramate-alanine ligase... 306 2e-82 ref|NP_337574.1| (NC_002755) D-alanine--D-alanine ligase [Mycoba... 304 6e-82 ref|NP_217497.1| (NC_000962) ddlA [Mycobacterium tuberculosis H3... 303 2e-81 ref|NP_219107.1| (NC_000919) D-alanine--D-alanine ligase (ddlA) ... 303 2e-81 gb|AAL27442.1|AF430807_7 (AF430807) VanE [Enterococcus faecalis] 301 1e-80 ref|NP_296522.1| (NC_002620) UDP-N-acetylmuramate--alanine ligas... 299 2e-80 sp|Q9PLG1|MUDD_CHLMU MURC/DDL BIFUNCTIONAL ENZYME [INCLUDES: UDP... 298 5e-80 gb|AAA60990.1| (L29638) ligase [Enterococcus casseliflavus] 295 4e-79 sp|Q9ZBR9|DDL_STRCO D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 295 5e-79 pdb|1EHI|A Chain A, D-Alanine:d-Lactate Ligase (Lmddl2) Of Vanco... 291 6e-78 gb|AAB18338.1| (U75444) D-Ala-D-Ala ligase2 [Leuconostoc mesente... 290 1e-77 sp|Q48745|DDL_LEUME D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 290 1e-77 ref|NP_539644.1| (NC_003317) D-ALANINE--D-ALANINE LIGASE A [Bruc... 289 3e-77 ref|NP_225100.1| (NC_000922) Muramate-Ala Ligase & D-Ala-D-Ala L... 285 6e-76 ref|NP_439298.1| (NC_000907) D-alanine--D-alanine ligase (ddlB) ... 274 1e-72 emb|CAC84690.1| (AJ306727) D-Ala:D-Lac ligase [Enterococcus faec... 271 6e-72 emb|CAC84688.1| (AJ306726) D-Ala:D-Lac ligase [Enterococcus faec... 268 8e-71 ref|NP_245081.1| (NC_002663) DdlB [Pasteurella multocida] >gi|13... 267 1e-70 ref|NP_212334.1| (NC_001318) D-alanine--D-alanine ligase (ddlA) ... 264 8e-70 ref|NP_252890.1| (NC_002516) D-alanine-D-alanine ligase A [Pseud... 264 1e-69 ref|NP_459135.1| (NC_003197) D-alanine-D-alanine ligase B, affec... 264 1e-69 ref|NP_414634.1| (NC_000913) D-alanine-D-alanine ligase B, affec... 263 2e-69 ref|NP_454742.1| (NC_003198) D-alanine:D-alanine ligase B [Salmo... 263 3e-69 ref|NP_285788.1| (NC_002655) D-alanine-D-alanine ligase B, affec... 262 3e-69 pdb|1IOW| Complex Of Y216f D-Ala:d-Ala Ligase With Adp And A P... 261 8e-69 ref|NP_386277.1| (NC_003047) PROBABLE D-ALANINE--D-ALANINE LIGAS... 260 1e-68 ref|NP_253100.1| (NC_002516) D-alanine--D-alanine ligase [Pseudo... 260 2e-68 ref|NP_103112.1| (NC_002678) D-alanyl-D-alanine ligase [Mesorhiz... 259 5e-68 ref|NP_404198.1| (NC_003143) D-alanine--D-alanine ligase B [Yers... 258 7e-68 gb|AAK97387.1|AF363615_1 (AF363615) D-alanine:D-alanine ligase 2... 252 3e-66 ref|NP_232962.1| (NC_002506) D-alanine--D-alanine ligase [Vibrio... 252 4e-66 ref|NP_242487.1| (NC_002570) D-alanyl-D-alanine ligase A [Bacill... 247 1e-64 ref|NP_520963.1| (NC_003295) PROBABLE D-ALANINE--D-ALANINE LIGAS... 245 3e-64 gb|AAB62175.1| (U94527) vancomycin resistance protein B [Enteroc... 243 2e-63 pir||T51694 D-alanine--D-alanine ligase (EC 6.3.2.4) [imported] ... 242 4e-63 ref|NP_355054.1| (NC_003062) AGR_C_3788p [Agrobacterium tumefaci... 241 6e-63 ref|NP_532764.1| (NC_003304) D-alanine:D-alanine ligase [Agrobac... 240 2e-62 dbj|BAA99407.1| (AB029826) 3-methylcrotonyl-CoA carboxylase biot... 239 3e-62 ref|NP_064551.2| (NM_020166) methylcrotonoyl-Coenzyme A carboxyl... 239 3e-62 gb|AAK67986.1|AF297332_1 (AF297332) 3-methylcrotonyl-CoA carboxy... 239 3e-62 gb|AAB62174.1| (U94526) vancomycin resistance protein B [Enteroc... 239 4e-62 gb|AAB62176.1| (U94528) vancomycin resistance protein B [Enteroc... 238 5e-62 sp|O51927|DDL_BUCAP D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 237 1e-61 gb|AAB49636.1| (U72704) vancomycin resistance protein [Enterococ... 235 6e-61 ref|NP_284760.1| (NC_003116) D-alanine--D-alanine ligase B [Neis... 232 5e-60 ref|NP_228072.1| (NC_000853) D-alanine--D-alanine ligase [Thermo... 230 2e-59 gb|AAD53933.1|AF179611_17 (AF179611) D-alanine:D-alanine ligase ... 230 2e-59 ref|NP_273472.1| (NC_003112) D-alanine--D-alanine ligase [Neisse... 230 2e-59 emb|CAA55651.1| (X79049) vanA2 [Oerskovia turbata] 229 2e-59 emb|CAB95026.1| (AJ237851) D-alanine-D-alanine ligase [Prochloro... 227 1e-58 ref|NP_213366.1| (NC_000918) D-alanine:D-alanine ligase [Aquifex... 227 2e-58 ref|NP_442228.1| (NC_000911) biotin carboxylase [Synechocystis s... 227 2e-58 ref|NP_539980.1| (NC_003317) BIOTIN CARBOXYLASE [Brucella melite... 226 3e-58 gb|AAB88214.1| (U59234) biotin carboxylase [Synechococcus sp. PC... 225 4e-58 ref|NP_359970.1| (NC_003103) D-alanine--D-alanine ligase [EC:6.3... 225 4e-58 ref|NP_484982.1| (NC_003272) biotin carboxylase [Nostoc sp. PCC ... 225 4e-58 ref|NP_076133.1| (NM_023644) methylcrotonoyl-Coenzyme A carboxyl... 222 4e-57 dbj|BAB25253.1| (AK007782) putative [Mus musculus] 222 5e-57 ref|NP_232019.1| (NC_002505) carbamoyl-phosphate synthase, large... 222 7e-57 ref|NP_220634.1| (NC_000963) D-ALANINE--D-ALANINE LIGASE (ddlB) ... 221 8e-57 ref|NP_243491.1| (NC_002570) pyruvate carboxylase [Bacillus halo... 220 2e-56 ref|NP_389369.1| (NC_000964) pyruvate carboxylase [Bacillus subt... 220 2e-56 ref|NP_539717.1| (NC_003317) PROPIONYL-COA CARBOXYLASE ALPHA CHA... 219 4e-56 gb|AAF80469.1|AF163150_1 (AF163150) acetyl-CoA carboxylase [Glyc... 219 4e-56 ref|NP_534077.1| (NC_003305) propionyl-coenzyme A carboxylase, a... 218 5e-56 pir||T07093 acetyl-CoA carboxylase (EC 6.4.1.2) biotin carboxyla... 218 6e-56 pir||T06279 acetyl-CoA carboxylase (EC 6.4.1.2), biotin carboxyl... 218 7e-56 ref|NP_102052.1| (NC_002678) biotin carboxylase [Mesorhizobium l... 218 7e-56 ref|NP_539499.1| (NC_003317) D-ALANINE--D-ALANINE LIGASE [Brucel... 218 7e-56 ref|NP_357031.1| (NC_003063) AGR_L_580GMp [Agrobacterium tumefac... 218 9e-56 pir||T02431 acetyl-CoA carboxylase (EC 6.4.1.2), biotin carboxyl... 218 9e-56 ref|NP_421346.1| (NC_002696) D-alanine--D-alanine ligase B [Caul... 215 5e-55 ref|NP_298089.1| (NC_002488) D-alanine--D-alanine ligase B [Xyle... 215 7e-55 ref|NP_354336.1| (NC_003062) AGR_C_2451p [Agrobacterium tumefaci... 215 8e-55 ref|NP_385425.1| (NC_003047) PROBABLE BIOTIN CARBOXYLASE PROTEIN... 213 2e-54 ref|NP_437988.1| (NC_003078) putative propionyl-CoA carboxylase ... 213 2e-54 ref|NP_519642.1| (NC_003295) PROBABLE CARBAMOYL-PHOSPHATE SYNTHA... 212 5e-54 ref|NP_214014.1| (NC_000918) biotin carboxylase [Aquifex aeolicu... 212 6e-54 gb|AAK25989.1|AF360279_1 (AF360279) putative biotin carboxylase ... 211 8e-54 ref|NP_198386.1| (NC_003076) acetyl-CoA carboxylase [Arabidopsis... 211 9e-54 ref|NP_371638.1| (NC_002758) pyruvate carboxylase [Staphylococcu... 211 1e-53 ref|NP_251581.1| (NC_002516) probable biotin carboxylase/biotin ... 210 1e-53 ref|NP_454677.1| (NC_003198) carbamoyl-phosphate synthase large ... 210 2e-53 sp|P14846|CARB_SALTY CARBAMOYL-PHOSPHATE SYNTHASE LARGE CHAIN (C... 210 2e-53 ref|NP_459072.1| (NC_003197) carbamoyl-phosphate synthase, large... 210 2e-53 gb|AAF57199.1| (AE003779) CG2118 gene product [Drosophila melano... 209 3e-53 ref|NP_281959.1| (NC_002163) putative D-alanine--D-alanine ligas... 209 3e-53 emb|CAB09721.1| (Z97025) pyruvate carboxylase [Bacillus subtilis] 209 4e-53 gb|AAK60339.1| (AY034410) biotin carboxylase [Brassica napus] 208 5e-53 pdb|1CE8|A Chain A, Carbamoyl Phosphate Synthetase From Escheric... 208 6e-53 ref|NP_414574.1| (NC_000913) carbamoyl-phosphate synthase large ... 208 6e-53 ref|NP_285727.1| (NC_002655) carbamoyl-phosphate synthase large ... 208 8e-53 ref|NP_246444.1| (NC_002663) CarB [Pasteurella multocida] >gi|12... 208 9e-53 ref|NP_274851.1| (NC_003112) carbamoyl-phosphate synthase, large... 208 9e-53 gb|AAF16526.1|AF191301_2 (AF191301) ADP-forming, carbamate-phosp... 208 1e-52 ref|NP_298397.1| (NC_002488) carbamoyl-phosphate synthase large ... 207 1e-52 ref|NP_283414.1| (NC_003116) carbamoyl phosphate synthase large ... 207 2e-52 ref|NP_248224.1| (NC_000909) biotin carboxylase (accC) [Methanoc... 206 2e-52 ref|NP_300241.1| (NC_002491) biotin carboxylase [Chlamydophila p... 206 3e-52 ref|NP_171808.1| (NC_003070) putative 3-methylcrotonyl-CoA carbo... 205 4e-52 gb|AAB41852.1| (U69163) D-Alanine:D-Alanine ligase [Streptococcu... 205 5e-52 gb|AAA60989.1| (L29641) D-alanine-D-alanine ligase-related enzym... 205 5e-52 ref|NP_224391.1| (NC_000922) Biotin Carboxylase [Chlamydophila p... 205 5e-52 ref|NP_219627.1| (NC_000117) Biotin Carboxylase [Chlamydia trach... 205 6e-52 pir||T44813 biotin carboxylase (EC 6.3.4.14) yngH [imported] - B... 205 6e-52 gb|AAA60988.1| (L29640) D-alanine-D-alanine ligase-related enzym... 205 7e-52 gb|AAB17900.1| (U39775) D-alanine:D-alanine ligase [Enterococcus... 204 9e-52 ref|NP_253444.1| (NC_002516) carbamoylphosphate synthetase large... 204 1e-51 dbj|BAA12072.1| (D83706) pyruvate carboxylase [Geobacillus stear... 204 1e-51 ref|NP_277017.1| (NC_000916) biotin carboxylase [Methanothermoba... 204 1e-51 dbj|BAB16297.1| (AB039884) acetyl-CoA carboxylase biotin carboxy... 203 1e-51 ref|NP_404125.1| (NC_003143) carbamoyl-phosphate synthase large ... 203 2e-51 gb|AAA24785.1| (L15304) vanB2 ORF [Enterococcus faecalis] 203 2e-51 gb|AAC16915.1| (U91914) D-alanine:D-alanine ligase [Streptococcu... 203 2e-51 ref|NP_241998.1| (NC_002570) biotin carboxylase [Bacillus halodu... 203 3e-51 ref|NP_372050.1| (NC_002758) acetyl-CoA carboxylase [Staphylococ... 202 4e-51 gb|AAF37343.1|AF170804_1 (AF170804) D-alanine:D-alanine ligase [... 202 4e-51 ref|NP_102581.1| (NC_002678) propionyl-CoA carboxylase alpha cha... 202 4e-51 gb|AAK28428.1|AF251259_1 (AF251259) D-alanine-D-X ligase VanD4 [... 202 5e-51 gb|AAB41853.1| (U69164) D-Alanine:D-Alanine ligase [Streptococcu... 202 6e-51 gb|AAB62520.1| (U91913) D-alanine:D-alanine ligase [Streptococcu... 202 7e-51 gb|AAG45427.1|AF317651_4 (AF317651) pyruvate carboxylase ATP-bin... 201 9e-51 gb|AAB41856.1| (U69167) D-Alanine:D-Alanine ligase [Streptococcu... 201 1e-50 gb|AAB62519.1| (U91912) D-alanine:D-alanine ligase [Streptococcu... 201 1e-50 ref|NP_296778.1| (NC_002620) acetyl-coenzyme A carboxylase, biot... 200 2e-50 gb|AAB41855.1| (U69166) D-Alanine:D-Alanine ligase [Streptococcu... 200 2e-50 gb|AAF37344.1|AF170805_1 (AF170805) D-alanine:D-alanine ligase [... 200 2e-50 ref|NP_293843.1| (NC_001263) acetyl-CoA carboxylase, biotin carb... 200 2e-50 emb|CAB44435.1| (AJ242913) carbamoylphosphate synthase (large su... 200 2e-50 ref|NP_187496.1| (NC_003074) unknown protein [Arabidopsis thalia... 199 3e-50 ref|NP_009767.1| (NC_001134) Urea amidolyase (contains urea carb... 199 4e-50 ref|NP_223393.1| (NC_000921) D-ALANINE--D-ALANINE LIGASE [Helico... 198 5e-50 ref|NP_283408.1| (NC_003116) putative acetyl-CoA carboxylase bio... 198 5e-50 ref|NP_070102.1| (NC_000917) carbamoyl-phosphate synthase, large... 198 7e-50 gb|AAB67843.1| (U40341) carbamoyl phosphate synthetase large cha... 198 8e-50 gb|AAB17897.1| (U39774) D-alanine:D-alanine ligase [Enterococcus... 198 8e-50 gb|AAF37349.1|AF170810_1 (AF170810) D-alanine:D-alanine ligase [... 198 8e-50 gb|AAF37342.1|AF170803_1 (AF170803) D-alanine:D-alanine ligase [... 198 9e-50 ref|NP_253535.1| (NC_002516) biotin carboxylase [Pseudomonas aer... 198 9e-50 gb|AAF32338.1|AF218939_6 (AF218939) acetyl-CoA carboxylase [Baci... 198 1e-49 ref|NP_274857.1| (NC_003112) acetyl-CoA carboxylase, biotin carb... 197 1e-49 ref|NP_276131.1| (NC_000916) carbamoyl-phosphate synthase, large... 197 1e-49 gb|AAB17901.1| (U39777) D-alanine:D-alanine ligase [Enterococcus... 197 1e-49 ref|NP_389706.1| (NC_000964) similar to biotin carboxylase [Baci... 197 1e-49 gb|AAC41643.1| (M64926) urea amidolyase [Saccharomyces cerevisiae] 196 2e-49 gb|AAH06915.1|AAH06915 (BC006915) Similar to Propionyl Coenzyme ... 196 2e-49 gb|AAB41851.1| (U69162) D-Alanine:D-Alanine ligase [Streptococcu... 196 3e-49 gb|AAB31500.1| (S72370) pyruvate carboxylase; pyruvate:carbon di... 196 3e-49 ref|NP_000273.1| (NM_000282) Propionyl-Coenzyme A carboxylase, a... 196 3e-49 ref|NP_174283.1| (NC_003070) carbamoylphosphate synthetase, puta... 196 3e-49 gb|AAB17899.1| (U39778) D-alanine:D-alanine ligase [Enterococcus... 196 3e-49 pir||T06360 methylcrotonoyl-CoA carboxylase (EC 6.4.1.4) biotin ... 196 3e-49 gb|AAL02364.1| (AY046947) propionyl CoA-carboxylase alpha-subuni... 196 4e-49 ref|NP_207532.1| (NC_000915) D-alanine:D-alanine ligase A (ddlA)... 195 5e-49 gb|AAB92588.1| (AF038548) pyruvate carboxylase [Corynebacterium ... 195 6e-49 ref|NP_217017.1| (NC_000962) accA1 [Mycobacterium tuberculosis H... 195 6e-49 ref|NP_000911.1| (NM_000920) pyruvate carboxylase precursor [Hom... 195 7e-49 sp|P11498|PYC_HUMAN Pyruvate carboxylase, mitochondrial precurso... 195 8e-49 ref|NP_032823.1| (NM_008797) pyruvate decarboxylase [Mus musculu... 194 9e-49 sp|P95803|DDL_STRMU PUTATIVE D-ALANINE--D-ALANINE LIGASE (D-ALAN... 194 1e-48 ref|NP_539184.1| (NC_003317) PYRUVATE CARBOXYLASE [Brucella meli... 194 1e-48 ref|NP_250702.1| (NC_002516) probable acyl-CoA carboxylase alpha... 194 1e-48 ref|NP_297342.1| (NC_002488) biotin carboxylase subunit of acety... 193 1e-48 gb|AAF37348.1| (AF170809) D-alanine:D-alanine ligase [Enterococc... 193 2e-48 emb|CAB87214.1| (AL163641) acetyl/propionyl CoA carboxylase alph... 193 2e-48 pir||S68252 pyruvate carboxylase (EC 6.4.1.1) precursor - rat >g... 193 2e-48 ref|NP_036876.1| (NM_012744) pyruvate carboxylase [Rattus norveg... 193 2e-48 pir||A34337 propionyl-CoA carboxylase (EC 6.4.1.3) alpha chain p... 193 3e-48 ref|NP_387384.1| (NC_003047) PROBABLE PYRUVATE CARBOXYLASE PROTE... 193 3e-48 ref|NP_357130.1| (NC_003063) AGR_L_2704p [Agrobacterium tumefaci... 193 3e-48 ref|NP_243653.1| (NC_002570) acetyl-CoA carboxylase biotin carbo... 193 3e-48 pir||T06565 acetyl-CoA carboxylase (EC 6.4.1.2) biotin carboxyla... 193 3e-48 ref|NP_282436.1| (NC_002163) biotin carboxylase [Campylobacter j... 192 3e-48 gb|AAC44388.1| (U51439) pyruvate carboxylase [Rhizobium etli] 192 4e-48 ref|NP_214048.1| (NC_000918) pyruvate carboxylase n-terminal dom... 192 4e-48 ref|NP_269044.1| (NC_002737) putative carbamoylphosphate synthet... 192 5e-48 ref|NP_509293.1| (NM_076892) Propionyl-coA carboxylase alpha cha... 191 6e-48 gb|AAF09095.1|AF068759_1 (AF068759) pyruvate carboxylase [Lactoc... 191 6e-48 ref|NP_355659.1| (NC_003062) AGR_C_4940p [Agrobacterium tumefaci... 191 7e-48 emb|CAA70282.1| (Y09061) acetyl-CoA carboxylase, biotin carboxyl... 191 7e-48 ref|NP_470397.1| (NC_003212) highly similar to pyruvate carboxyl... 191 8e-48 ref|NP_254123.1| (NC_002516) probable biotin carboxylase subunit... 191 9e-48 ref|NP_104954.1| (NC_002678) pyruvate carboxylase [Mesorhizobium... 191 1e-47 ref|NP_520908.1| (NC_003295) PROBABLE BIOTIN CARBOXYLASE PROTEIN... 191 1e-47 ref|NP_350153.1| (NC_003030) Biotin carboxylase [Clostridium ace... 190 1e-47 ref|NP_464597.1| (NC_003210) highly similar to pyruvate carboxyl... 190 1e-47 ref|NP_505977.1| (NM_073576) pyruvate carboxylase [Caenorhabditi... 190 2e-47 ref|NP_464882.1| (NC_003210) acetyl-CoA carboxylase subunit (bio... 190 2e-47 ref|NP_349267.1| (NC_003030) Pyruvate carboxylase, PYKA [Clostri... 190 2e-47 ref|NP_103843.1| (NC_002678) carbamoyl-phosphate synthase large ... 189 3e-47 ref|NP_470730.1| (NC_003212) acetyl-CoA carboxylase subunit (bio... 189 4e-47 gb|AAA88512.1| (M22631) alpha-propionyl-CoA carboxylase (EC 6.4.... 189 4e-47 ref|NP_248384.1| (NC_000909) carbamoyl-phosphate synthase, large... 188 5e-47 ref|NP_349251.1| (NC_003030) Carbamoylphosphate synthase large s... 188 5e-47 pir||T43735 pyruvate carboxylase (EC 6.4.1.1) [validated] - yell... 188 6e-47 ref|NP_239976.1| (NC_002528) carbamoyl-phosphate synthase large ... 188 7e-47 gb|AAA53140.1| (U08469) 3-methylcrotonyl-CoA carboxylase, biotin... 188 7e-47 pir||S71009 biotin carboxylase protein A2 - Saccharopolyspora er... 188 7e-47 gb|AAF37347.1|AF170808_1 (AF170808) D-alanine:D-alanine ligase [... 188 8e-47 sp|P14882|PCCA_RAT PROPIONYL-COA CARBOXYLASE ALPHA CHAIN, MITOCH... 188 8e-47 pdb|1A9X|A Chain A, Carbamoyl Phosphate Synthetase: Caught In Th... 188 8e-47 sp|P46537|CARB_BACCL CARBAMOYL-PHOSPHATE SYNTHASE, PYRIMIDINE-SP... 188 9e-47 ref|NP_069058.1| (NC_000917) biotin carboxylase (acc) [Archaeogl... 188 1e-46 gb|AAD34740.1| (AF132152) unknown [Drosophila melanogaster] >gi|... 187 1e-46 pir||S36974 hypothetical protein 8 (atpB 5' region) - Synechococ... 187 1e-46 gb|AAA67356.1| (U12536) 3-methylcrotonyl-CoA carboxylase precurs... 187 1e-46 ref|NP_501777.1| (NM_069376) carbomoyl-phosphate carboxylase [Ca... 187 1e-46 ref|NP_282187.1| (NC_002163) putative pyruvate carboxylase A sub... 187 2e-46 gb|AAG22289.1| (AE003831) BcDNA:GH06348 gene product [alt 1] [Dr... 187 2e-46 ref|NP_533976.1| (NC_003305) 3-methylcrotonyl-CoA carboxylase al... 186 2e-46 prf||2009329A urea amidolyase [Pichia jadinii] 186 3e-46 ref|NP_385682.1| (NC_003047) PROBABLE CARBAMOYL-PHOSPHATE SYNTHA... 186 3e-46 ref|NP_107983.1| (NC_002678) 3-methylcrotonyl-CoA carboxylase bi... 186 3e-46 pir||S71006 biotin carboxylase protein A1 - Saccharopolyspora er... 186 3e-46 ref|NP_420691.1| (NC_002696) acetyl-CoA carboxylase, biotin carb... 186 3e-46 gb|AAB17898.1| (U39776) D-alanine:D-alanine ligase [Enterococcus... 186 3e-46 ref|NP_437243.1| (NC_003078) putative methylcrotonoyl-CoA carbox... 185 4e-46 pir||T44419 carbamoyl-phosphate synthase (glutamine-hydrolyzing)... 185 6e-46 ref|NP_345739.1| (NC_003028) carbamoyl-phosphate synthase, large... 185 6e-46 ref|NP_358746.1| (NC_003098) Carbamoylphosphate synthase (ammoni... 185 6e-46 ref|NP_420982.1| (NC_002696) propionyl-CoA carboxylase, alpha su... 185 6e-46 ref|NP_518386.1| (NC_003295) PROBABLE ACYL-COA CARBOXYLASE ALPHA... 185 7e-46 ref|NP_301455.1| (NC_002677) putative carbamoyl-phosphate syntha... 185 7e-46 ref|NP_371727.1| (NC_002758) carbamoyl-phosphate synthase large ... 184 1e-45 pir||PN0478 vancomycin resistance-conferring protein - Enterococ... 184 1e-45 ref|NP_047031.1| (NC_001905) PCACA; L549.5 [Leishmania major] >g... 184 1e-45 ref|NP_220985.1| (NC_000963) PROPIONYL-COA CARBOXYLASE ALPHA CHA... 184 1e-45 gb|AAG37836.1|AF295372_1 (AF295372) pyruvate carboxylase [Danio ... 184 1e-45 ref|NP_389435.1| (NC_000964) carbamoyl-phosphate synthetase (cat... 184 1e-45 ref|NP_465360.1| (NC_003210) highly similar to carbamoyl-phospha... 183 2e-45 dbj|BAA94293.1| (AB029444) Carbamoyl-phosphate Synthetase [Leish... 183 2e-45 ref|NP_246028.1| (NC_002663) AccC [Pasteurella multocida] >gi|12... 183 2e-45 ref|NP_439133.1| (NC_000907) acetyl-CoA carboxylase, biotin carb... 183 2e-45 pir||T09538 acetyl-CoA carboxylase (EC 6.4.1.2) - alfalfa >gi|49... 183 2e-45 gb|AAA74996.1| (U11295) carbamoyl phosphate synthetase (glutamin... 183 3e-45 ref|NP_360596.1| (NC_003103) propionyl-CoA carboxylase alpha cha... 183 3e-45 ref|NP_390314.1| (NC_000964) acetyl-CoA carboxylase subunit (bio... 183 3e-45 pir||T30820 carbamoyl-phosphate synthase (ammonia) (EC 6.3.4.16)... 183 3e-45 ref|NP_215900.1| (NC_000962) Carbamoylphosphate synthase large s... 183 3e-45 ref|NP_243402.1| (NC_002570) carbamoyl-phosphate synthetase (cat... 183 3e-45 ref|NP_267519.1| (NC_002662) carbamoylphosphate synthetase [Lact... 182 4e-45 ref|NP_539439.1| (NC_003317) CARBAMOYL-PHOSPHATE SYNTHASE LARGE ... 182 4e-45 ref|NP_471283.1| (NC_003212) highly similar to carbamoyl-phospha... 182 4e-45 ref|NP_281472.1| (NC_002163) carbamoyl-phosphate synthase large ... 182 5e-45 gb|AAD25800.1|AC006550_8 (AC006550) Identical to gb|U12536 3-met... 182 5e-45 gb|AAG10491.1|AF279106_53 (AF279106) predicted acetyl-CoA carbox... 182 5e-45 emb|CAB56843.1| (X99978) carbamoyl-phosphate synthase large subu... 182 5e-45 emb|CAA72256.1| (Y11467) carbamoyl-phosphate synthase (glutamine... 181 6e-45 gb|AAB40890.1| (U35023) acyl coenzyme A carboxylase [Corynebacte... 181 6e-45 emb|CAA03928.1| (AJ000109) carbamoylphosphate synthetase [Lactoc... 181 7e-45 gb|AAF04493.2|AF157612_1 (AF157612) acetyl-CoA carboxylase 1 pre... 181 7e-45 emb|CAA94438.1| (Z70527) D-alanine:D-alanine ligase-related prot... 181 1e-44 ref|NP_372130.1| (NC_002758) acetyl-CoA carboxylase [Staphylococ... 181 1e-44 ref|NP_214438.1| (NC_000918) carbamoyl-phosphate synthase large ... 181 1e-44 ref|NP_214146.1| (NC_000918) biotin carboxylase [Aquifex aeolicu... 181 1e-44 ref|NP_243761.1| (NC_002570) arginine specific carbamoyl-phospha... 181 1e-44 ref|NP_540842.1| (NC_003317) acetyl-CoA carboxylase alpha chain ... 180 1e-44 gb|AAD37851.1|AF126429_1 (AF126429) JadJ [Streptomyces venezuelae] 180 2e-44 pir||A64472 carbamoyl-phosphate synthase, large chain (EC 6.3.-.... 180 2e-44 sp|P49787|ACCC_BACSU BIOTIN CARBOXYLASE (A SUBUNIT OF ACETYL-COA... 180 2e-44 pir||T39734 pyruvate carboxylase (EC 6.4.1.1) [similarity] - fis... 180 2e-44 ref|NP_207168.1| (NC_000915) biotin carboxylase (accC) [Helicoba... 180 2e-44 sp|Q9TTS3|COA1_BOVIN ACETYL-COA CARBOXYLASE 1 (ACC-ALPHA) [INCLU... 180 2e-44 ref|NP_442333.1| (NC_000911) carbamoyl-phosphate synthase, pyrim... 180 2e-44 ref|NP_444059.1| (NC_000914) Y4sG [Rhizobium sp. NGR234] >gi|249... 180 2e-44 dbj|BAA11239.1| (D78170) pyruvate carboxylase [Schizosaccharomyc... 180 2e-44 ref|NP_228367.1| (NC_000853) carbamoyl-phosphate synthase, large... 180 2e-44 ref|NP_407114.1| (NC_003143) biotin carboxylase [Yersinia pestis... 180 3e-44 ref|NP_106581.1| (NC_002678) 3-methylcrotonyl-CoA carboxylase bi... 180 3e-44 ref|NP_487849.1| (NC_003272) carbamoyl phosphate synthetase larg... 180 3e-44 gb|AAA60991.1| (L29639) ligase [Enterococcus flavescens] 179 3e-44 ref|NP_248381.1| (NC_000909) carbamoyl-phosphate synthase, mediu... 179 3e-44 ref|NP_355138.1| (NC_003062) AGR_C_3955p [Agrobacterium tumefaci... 179 3e-44 pir||S41121 acetyl-CoA carboxylase (EC 6.4.1.2) - human >gi|4523... 179 3e-44 ref|NP_356721.1| (NC_003063) AGR_L_1864p [Agrobacterium tumefaci... 179 4e-44 ref|NP_420636.1| (NC_002696) urea amidolyase-related protein [Ca... 179 4e-44 sp|Q28559|COA1_SHEEP ACETYL-COA CARBOXYLASE 1 (ACC-ALPHA) [INCLU... 179 4e-44 ref|NP_223728.1| (NC_000921) BIOTIN CARBOXYLASE [Helicobacter py... 179 4e-44 ref|NP_229950.1| (NC_002505) acetyl-CoA carboxylase, biotin carb... 179 4e-44 ref|NP_532851.1| (NC_003304) carbamoylphosphate synthase large s... 179 4e-44 gb|AAG30191.1| (AF293442) biotin carboxylase [Streptomyces sp. R... 179 5e-44 ref|NP_421694.1| (NC_002696) carbamoyl-phosphate synthase, large... 178 5e-44 gb|AAD09129.1| (AF112473) PyrABCN [Emericella nidulans] 178 5e-44 gb|AAG40564.1|AF062308_2 (AF062308) acetyl-CoA carboxylase 2 [Ar... 178 6e-44 ref|NP_249185.1| (NC_002516) probable acyl-CoA carboxylase subun... 178 6e-44 sp|P77886|CARB_LACPL CARBAMOYL-PHOSPHATE SYNTHASE, PYRIMIDINE-SP... 178 6e-44 pir||T06161 acetyl-CoA carboxylase (EC 6.4.1.2) - wheat >gi|2827... 178 6e-44 ref|NP_457756.1| (NC_003198) biotin carboxylase [Salmonella ente... 178 7e-44 ref|NP_174850.1| (NC_003070) acetyl-CoA carboxylase, putative [A... 178 8e-44 ref|NP_174849.1| (NC_003070) acetyl-CoA carboxylase, putative [A... 178 9e-44 dbj|BAA07012.1| (D34630) acetyl-CoA carboxylase [Arabidopsis tha... 178 1e-43 gb|AAF18638.2|AC006228_9 (AC006228) F5J5.19 [Arabidopsis thaliana] 178 1e-43 gb|AAA68280.1| (M27174) carbamyl phosphate synthetase [Saccharom... 178 1e-43 ref|NP_012405.1| (NC_001142) First and second steps of pyrimidin... 178 1e-43 gb|AAL02056.1|AF294805_1 (AF294805) acetyl-coenzyme A carboxylas... 177 1e-43 sp|P11029|COAC_CHICK ACETYL-COA CARBOXYLASE (ACC) [INCLUDES: BIO... 177 1e-43 gb|AAC41645.1| (L27074) acetyl-CoA carboxylase [Arabidopsis thal... 177 1e-43 emb|CAA60825.1| (X87371) carbamyl phosphate synthetase [Saccharo... 177 1e-43 gb|AAA34843.1| (J03889) pyruvate carboxylase (EC 6.4.1.1) [Sacch... 177 1e-43 gb|AAB41857.1| (U69168) D-Alanine:D-Alanine ligase [Streptococcu... 177 2e-43 ref|NP_011453.1| (NC_001139) converts pyruvate to oxaloacetate; ... 177 2e-43 pir||T02235 acetyl-CoA carboxylase (EC 6.4.1.2) - maize >gi|8547... 176 2e-43 sp|Q09794|PYR1_SCHPO URA1 PROTEIN [INCLUDES: GLUTAMINE-DEPENDENT... 176 2e-43 ref|NP_009777.1| (NC_001134) converts pyruvate to oxaloacetate; ... 176 2e-43 pir||T06162 acetyl-CoA carboxylase (EC 6.4.1.2) - wheat (fragmen... 176 2e-43 pir||A57710 acetyl-CoA carboxylase (EC 6.4.1.2) - wheat >gi|5143... 176 2e-43 emb|CAC19876.1| (AJ131866) acetyl-CoA carboxylase [Brassica napus] 176 2e-43 gb|AAC49275.1| (U39321) acetyl-CoA carboxylase [Triticum aestivu... 176 2e-43 ref|NP_071529.1| (NM_022193) acetyl-coenzyme A carboxylase [Ratt... 176 2e-43 emb|CAC22142.1| (AL512902) putative acyl-CoA carboxylase complex... 176 2e-43 sp|P08955|PYR1_MESAU CAD PROTEIN [INCLUDES: GLUTAMINE-DEPENDENT ... 176 2e-43 ref|NP_357979.1| (NC_003098) Biotin carboxylase (a subunit of ac... 176 2e-43 gb|AAC39331.1| (AF029896) acetyl-coenzyme A carboxylase [Triticu... 176 2e-43 ref|NP_344948.1| (NC_003028) acetyl-CoA carboxylase, biotin carb... 176 3e-43 gb|AAA37062.1| (J05503) carbamoyl-phosphate synthetase (E.C.6.3.... 176 3e-43 emb|CAA42544.1| (X59890) pyruvate carboxylase [Saccharomyces cer... 176 3e-43 ref|NP_000655.1| (NM_000664) acetyl-Coenzyme A carboxylase alpha... 176 3e-43 ref|NP_280547.1| (NC_002607) carbamoyl-phosphate synthase large ... 176 4e-43 emb|CAC19838.1| (AJ009972) pyruvate carboxylase [Aspergillus niger] 176 4e-43 gb|AAC69197.1| (AF097728) pyruvate carboxylase [Aspergillus terr... 176 4e-43 ref|NP_417722.1| (NC_000913) acetyl CoA carboxylase, biotin carb... 175 4e-43 gb|AAA23748.1| (M79446) biotin carboxylase [Escherichia coli] 175 4e-43 pir||T33717 carbamoyl-phosphate synthase (glutamine-hydrolyzing)... 175 4e-43 emb|CAC21629.1| (AL512667) putative acyl-CoA carboxylase complex... 175 5e-43 sp|P20054|PYR1_DICDI PROTEIN PYR1-3 [INCLUDES: GLUTAMINE-DEPENDE... 175 5e-43 ref|NP_312155.1| (NC_002695) acetyl CoA carboxylase biotin carbo... 175 5e-43 ref|NP_213797.1| (NC_000918) carbamoyl-phosphate synthase large ... 175 6e-43 ref|NP_294391.1| (NC_001263) carbamoyl-phosphate synthase, large... 175 7e-43 ref|NP_289824.1| (NC_002655) acetyl CoA carboxylase, biotin carb... 175 8e-43 pir||T07084 acetyl-CoA carboxylase (EC 6.4.1.2) A - soybean >gi|... 175 9e-43 ref|NP_266934.1| (NC_002662) biotin carboxylase (EC 6.3.4.14) [L... 174 1e-42 pdb|1DV2|A Chain A, The Structure Of Biotin Carboxylase, Mutant ... 174 1e-42 pir||T07923 acetyl-CoA carboxylase (EC 6.4.1.2) A - rape (fragme... 173 2e-42 emb|CAC19875.1| (AJ131865) acetyl-CoA carboxylase [Brassica napus] 173 2e-42 pir||S23738 pyr1-3 protein - slime mold (Dictyostelium discoideu... 173 2e-42 pir||T07920 probable acetyl-CoA carboxylase (EC 6.4.1.2) - rape ... 173 2e-42 pir||T42206 probable acyl-CoA carboxylase complex A chain - Stre... 172 5e-42 ref|NP_376481.1| (NC_003106) 513aa long hypothetical biotin carb... 172 5e-42 ref|NP_522501.1| (NC_003296) PUTATIVE BIOTIN CARBOXYLASE PROTEIN... 171 8e-42 gb|AAD45667.1|AF136925_1 (AF136925) D-alanine-D-serine ligase [E... 171 8e-42 pir||S65074 pyrimidine synthesis protein URA1 - fission yeast (... 171 1e-41 pir||T07081 acetyl-CoA carboxylase (EC 6.4.1.2) B - soybean (fra... 170 1e-41 pir||T42202 probable acyl-CoA carboxylase complex A chain - Stre... 170 1e-41 ref|XP_002428.5| (XM_002428) similar to carbamoyl-phosphate synt... 170 2e-41 ref|NP_389006.1| (NC_000964) carbamoyl-phosphate transferase-arg... 170 2e-41 ref|NP_356380.1| (NC_003063) AGR_L_1177p [Agrobacterium tumefaci... 170 2e-41 ref|NP_420971.1| (NC_002696) acetyl/propionyl-CoA carboxylase, a... 170 2e-41 ref|NP_266825.1| (NC_002662) pyruvate carboxylase (6.4.1.1) [Lac... 170 2e-41 ref|NP_269768.1| (NC_002737) putative acetyl-CoA carboxylase bio... 170 2e-41 ref|NP_223571.1| (NC_000921) CARBAMOYL-PHOSPHATE SYNTHASE LARGE ... 169 4e-41 emb|CAB93363.1| (AL357523) carbamoylphosphate synthetase large c... 169 4e-41 ref|NP_004332.1| (NM_004341) carbamoyl-phosphate synthetase 2, a... 169 5e-41 gb|AAD51318.2| (AF169248) acetylglutamate-activated carbamoyl ph... 168 7e-41 dbj|BAA93643.1| (AB025973) biotin carboxylase [Lactobacillus pla... 168 8e-41 gb|AAG30411.1|AF262949_2 (AF262949) pyruvate carboxylase [Mycoba... 168 8e-41 gb|AAA87683.1| (U08913) putative D-alanine:D-alanine ligase [Lac... 167 1e-40 gb|AAA87682.1| (U08912) putative D-alanine:D-alanine ligase [Lac... 167 2e-40 pir||T30518 carbamoyl-phosphate synthase (ammonia) (EC 6.3.4.16)... 166 2e-40 sp|Q91437|PYR1_SQUAC CAD PROTEIN [INCLUDES: GLUTAMINE-DEPENDENT ... 165 5e-40 emb|CAB48407.1| (AJ243652) urea amidolyase homologue [Pseudomona... 165 5e-40 ref|NP_058768.1| (NM_017072) carboamyl-phosphate synthetase 1 [R... 165 8e-40 pir||T44290 biotin carboxylase (EC 6.3.4.14) [imported] - Sulfol... 165 8e-40 sp|P78992|PYC_PICPA PYRUVATE CARBOXYLASE (PYRUVIC CARBOXYLASE) (... 165 8e-40 ref|XP_040883.1| (XM_040883) similar to CARBAMOYL-PHOSPHATE SYNT... 165 9e-40 pir||S73055 pyc protein - Mycobacterium tuberculosis >gi|560527|... 165 1e-39 gb|AAL38923.1| (AF325676) acetyl-CoA carboxylase [Lolium multifl... 164 1e-39 ref|NP_301567.1| (NC_002677) acetyl/propionyl CoA carboxylase [a... 164 1e-39 gb|AAB62566.1| (AF006491) carbamoyl-phosphate synthetase III; CP... 164 1e-39 gb|AAD43968.1|AF119250_1 (AF119250) carbamoyl-phosphate syntheta... 164 1e-39 pir||A55579 biotin carboxyl carrier protein - Mycobacterium lepr... 163 2e-39 emb|CAB59603.1| (AL132662) pyruvate carboxylase [Streptomyces co... 163 2e-39 gb|AAA87681.1| (U08911) putative D-alanine:D-alanine ligase [Lac... 163 2e-39 ref|NP_207711.1| (NC_000915) carbamoyl-phosphate synthase (gluta... 163 2e-39 gb|AAF59156.1| (AE003839) CG8723 gene product [Drosophila melano... 163 2e-39 ref|NP_001866.1| (NM_001875) carbamoyl-phosphate synthetase 1, m... 163 2e-39 ref|NP_217483.1| (NC_000962) pca [Mycobacterium tuberculosis H37... 163 2e-39 gb|AAC78719.1| (U43091) carbamoylphosphate synthetase heavy subu... 163 2e-39 gb|AAC60207.1| (U65893) carbamoyl-phosphate synthetase III [Onco... 163 3e-39 emb|CAA89922.1| (Z49809) unknown [Saccharomyces cerevisiae] 162 4e-39 ref|NP_215488.1| (NC_000962) accA2 [Mycobacterium tuberculosis H... 161 7e-39 ref|XP_011009.3| (XM_011009) methylcrotonoyl-Coenzyme A carboxyl... 161 7e-39 sp|P32874|HFA1_YEAST HFA1 PROTEIN 161 8e-39 dbj|BAA24410.1| (D78165) acetyl-coenzyme A carboxylase like carb... 161 9e-39 emb|CAA80280.1| (Z22558) HFA1 [Saccharomyces cerevisiae] 161 1e-38 ref|NP_013934.1| (NC_001145) Similar to acetyl-coenzyme A carbox... 161 1e-38 ref|NP_285633.1| (NC_001264) carboxylase [Deinococcus radioduran... 161 1e-38 pir||T39898 carbamoyl-phosphate synthase (glutamine-hydrolyzing)... 160 1e-38 ref|NP_217802.1| (NC_000962) accA3 [Mycobacterium tuberculosis H... 160 2e-38 pir||S49991 acetyl-CoA carboxylase (EC 6.4.1.2) - smut fungus (U... 160 2e-38 ref|NP_493922.1| (NM_061521) acetyl-CoA carboxylase [Caenorhabdi... 160 2e-38 sp|Q91293|CPSM_RANCA CARBAMOYL-PHOSPHATE SYNTHASE [AMMONIA], MIT... 160 2e-38 ref|NP_012643.1| (NC_001142) carbamyl phosphate synthetase; Cpa2... 160 2e-38 pir||S53602 carbamoyl-phosphate synthase (glutamine-hydrolyzing)... 159 4e-38 ref|NP_111322.1| (NC_002689) Carbamoylphosphate synthase large s... 159 4e-38 gb|AAA96435.1| (L31362) carbamyl phosphate synthetase III [Squal... 159 4e-38 pir||A48757 acetyl-CoA carboxylase (EC 6.4.1.2) - Cyclotella cry... 159 4e-38 pir||T18410 carbamoyl-phosphate synthase (glutamine-hydrolyzing)... 157 2e-37 ref|NP_280339.1| (NC_002607) biotin carboxylase; Acc [Halobacter... 156 3e-37 gb|AAA20073.1| (M92156) acetyl-CoA carboxylase [Saccharomyces ce... 156 4e-37 ref|NP_014413.1| (NC_001146) acetyl-CoA carboxylase; Acc1p [Sacc... 156 4e-37 gb|AAG10785.1| (AF286897) carbamoyl phosphate synthetase II [Pla... 155 5e-37 ref|NP_394253.1| (NC_002578) probable carbamoyl-phosphate syntha... 155 5e-37 ref|NP_495838.1| (NM_063437) glutamine-dependent carbamoyl-phosp... 155 6e-37 emb|CAB07850.1| (Z93780) carbamoyl phosphate synthetase III [Tak... 155 6e-37 sp|P46056|CARB_TRICU CARBAMOYL-PHOSPHATE SYNTHASE, ARGININE-SPEC... 155 7e-37 pir||T30568 acetyl-CoA carboxylase (EC 6.4.1.2) - Emericella nid... 155 7e-37 ref|NP_446374.1| (NM_053922) acetyl-Coenzyme A carboxylase beta ... 155 7e-37 sp|P78820|COAC_SCHPO ACETYL-COA CARBOXYLASE (ACC) [INCLUDES: BIO... 154 1e-36 emb|CAB64493.1| (AJ387980) D-alanine--D-alanine ligase [Streptoc... 153 3e-36 emb|CAB64494.1| (AJ387981) D-alanine--D-alanine ligase [Streptoc... 153 3e-36 emb|CAA13256.1| (AJ232253) D-alanine D-alanine ligase [Streptoco... 152 4e-36 emb|CAA13247.1| (AJ232244) D-alanine D-alanine ligase [Streptoco... 152 4e-36 emb|CAA13255.1| (AJ232252) D-alanine D-alanine ligase [Streptoco... 152 4e-36 ref|NP_343814.1| (NC_002754) Biotin carboxylase a subunit of pro... 152 5e-36 emb|CAB60643.1| (AJ252530) D-ala,D-ala ligase [Streptococcus pne... 152 6e-36 emb|CAB60645.1| (AJ252532) D-ala,D-ala ligase [Streptococcus pne... 152 6e-36 ref|NP_377467.1| (NC_003106) 1049aa long hypothetical carbamoyl-... 151 7e-36 emb|CAB64495.1| (AJ387982) D-alanine--D-alanine ligase [Streptoc... 151 9e-36 emb|CAA13261.1| (AJ232258) D-alanine D-alanine ligase [Streptoco... 151 9e-36 pir||T42531 acetyl-CoA carboxylase (EC 6.4.1.2) - fission yeast ... 151 1e-35 emb|CAB60642.1| (AJ252529) D-ala,D-ala ligase [Streptococcus pne... 151 1e-35 gb|AAF48639.2| (AE003503) CG18572 gene product [Drosophila melan... 151 1e-35 emb|CAB16964.1| (Z99839) D-alanine:D-alanine ligase [Streptococc... 151 1e-35 emb|CAA13267.1| (AJ232264) D-alanine D-alanine ligase [Streptoco... 151 1e-35 emb|CAA13253.1| (AJ232250) D-alanine D-alanine ligase [Streptoco... 151 1e-35 gb|AAA87680.1| (U08910) putative D-alanine:D-alanine ligase [Wei... 151 1e-35 emb|CAA13259.1| (AJ232256) D-alanine D-alanine ligase [Streptoco... 151 1e-35 emb|CAA13245.1| (AJ232242) D-alanine D-alanine ligase [Streptoco... 151 1e-35 emb|CAB16966.1| (Z99841) D-alanine:D-alanine ligase [Streptococc... 151 1e-35 gb|AAF04494.2|AF157613_1 (AF157613) acetyl-CoA carboxylase 2 [To... 151 1e-35 emb|CAA13246.1| (AJ232243) D-alanine D-alanine ligase [Streptoco... 150 1e-35 emb|CAB64496.1| (AJ387983) D-alanine--D-alanine ligase [Streptoc... 150 1e-35 emb|CAB16962.1| (Z99837) D-alanine:D-alanine ligase [Streptococc... 150 2e-35 emb|CAB60641.1| (AJ252528) D-ala,D-ala ligase [Streptococcus pne... 150 2e-35 emb|CAA13581.1| (AJ233888) D-alanine D-alanine ligase [Streptoco... 150 2e-35 emb|CAB64497.1| (AJ387984) D-alanine--D-alanine ligase [Streptoc... 150 2e-35 emb|CAA13269.1| (AJ232266) D-alanine D-alanine ligase [Streptoco... 150 2e-35 emb|CAB16963.1| (Z99838) D-alanine:D-alanine ligase [Streptococc... 150 2e-35 gb|AAD18071.1| (AF129814) carbamyl phosphate synthetase II; CPS.... 150 2e-35 emb|CAA13580.1| (AJ233887) D-alanine D-alanine ligase [Streptoco... 150 2e-35 emb|CAB60640.1| (AJ252527) D-ala,D-ala ligase [Streptococcus pne... 150 2e-35 emb|CAA13262.1| (AJ232259) D-alanine D-alanine ligase [Streptoco... 150 2e-35 emb|CAB16971.1| (Z99846) D-alanine:D-alanine ligase [Streptococc... 150 2e-35 emb|CAA13252.1| (AJ232249) D-alanine D-alanine ligase [Streptoco... 150 3e-35 pir||A49930 carB protein homolog - Mycobacterium bovis (strain B... 150 3e-35 emb|CAA13276.1| (AJ232273) D-alanine D-alanine ligase [Streptoco... 150 3e-35 emb|CAB16982.1| (Z99857) D-alanine:D-alanine ligase [Streptococc... 149 4e-35 ref|NP_342159.1| (NC_002754) Carbamoyl-phosphate synthase large ... 149 5e-35 Sequences not found previously or not previously below threshold: gb|AAG10786.1| (AF286898) carbamoyl phosphate synthetase II [Pla... 154 1e-36 >ref|NP_286119.1| (NC_002655) Z0477 gene product [Escherichia coli O157:H7 EDL933] ref|NP_308458.1| (NC_002695) D-alanine-D-alanine ligase A [Escherichia coli O157:H7] ref|NP_414915.1| (NC_000913) D-alanine-D-alanine ligase A [Escherichia coli K12] sp|P23844|DDLA_ECOLI D-ALANINE--D-ALANINE LIGASE A (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||CEECDA D-alanine--D-alanine ligase (EC 6.3.2.4) A - Escherichia coli gb|AAA23671.1| (M58467) D-alanine:D-alanine ligase A [Escherichia coli] gb|AAB18104.1| (U73857) D-alanine--D-alanine ligase A [Escherichia coli] gb|AAC73484.1| (AE000144) D-alanine-D-alanine ligase A [Escherichia coli K12] gb|AAG54727.1|AE005217_5 (AE005217) Z0477 gene product [Escherichia coli O157:H7 EDL933] dbj|BAB33854.1| (AP002551) D-alanine-D-alanine ligase A [Escherichia coli O157:H7] Length = 364 Score = 398 bits (1022), Expect = e-110 Identities = 364/364 (100%), Positives = 364/364 (100%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN Sbjct: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML Sbjct: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL Sbjct: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ Sbjct: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR Sbjct: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL Sbjct: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 Query: 361 KTTM 364 KTTM Sbjct: 361 KTTM 364 >ref|NP_454975.1| (NC_003198) D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica serovar Typhi] ref|NP_459375.1| (NC_003197) D-alanine-D-alanine ligase A [Salmonella typhimurium LT2] sp|P15051|DDLA_SALTY D-alanine--D-alanine ligase A (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) pir||CEEBDT D-alanine--D-alanine ligase (EC 6.3.2.4) A - Salmonella typhimurium gb|AAA27056.1| (M20793) D-alanine:D-alanine ligase (EC 6.3.2.4) [Salmonella typhimurium] gb|AAL19334.1| (AE008713) D-alanine-D-alanine ligase A [Salmonella typhimurium LT2] emb|CAD08835.1| (AL627266) D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica serovar Typhi] Length = 364 Score = 394 bits (1014), Expect = e-109 Identities = 327/364 (89%), Positives = 344/364 (93%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDK+RFDVVLLGIDK GQWHV+DA NYL N Sbjct: 1 MAKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQN 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 ADDPAHIALRPSA SLAQVPGKH+HQLI+AQNGQPLPTVDVIFPIVHGTLGEDGSLQGML Sbjct: 61 ADDPAHIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 RVANLPFVGSDVL+SAACMDKDV KRLLRDAGLNIAPFITLTR NRH SFAEVES+LGL Sbjct: 121 RVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGL 180 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 PLFVKPANQGSSVGVSKV +E QY AV LAFEFDHKV+VEQGIKGREIECAVLGNDNPQ Sbjct: 181 PLFVKPANQGSSVGVSKVANEAQYQQAVALAFEFDHKVVVEQGIKGREIECAVLGNDNPQ 240 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 ASTCGEIVL S+FYAYDTKYID++GA+VVVPA I E+NDKIRAIA+QAYQTLGCAGMAR Sbjct: 241 ASTCGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMAR 300 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 VDVFLT +NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLI+RLIELALERH A+NAL Sbjct: 301 VDVFLTADNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELALERHTANNAL 360 Query: 361 KTTM 364 KTTM Sbjct: 361 KTTM 364 >sp|Q47827|DDL_ENTHR D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAB17904.1| (U39788) D-alanine:D-alanine ligase [Enterococcus hirae] Length = 358 Score = 364 bits (935), Expect = e-100 Identities = 141/358 (39%), Positives = 213/358 (59%), Gaps = 10/358 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ +++GG+SAEH+VS+ SA ++++AI + + V L+ I K+GQW + + Sbjct: 1 MKITLLYGGRSAEHDVSVLSAFSVLNAIYYTYYQVQLIFISKEGQWVKGPLLTEKPTSKE 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 H+ PS G+ G+ ++FP++HG GEDG++QG L Sbjct: 61 DLHLTWDPSGKVTDGFTGR------VINPGEIKEEGTIVFPVLHGPNGEDGTIQGFLETL 114 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRHNISFAEVESKLGL 180 NLP+VG+ VL SA MDK +TK +L+ AG+ P++ + + F + E L Sbjct: 115 NLPYVGAGVLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKIFDQCEGSLLY 174 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+FVKPAN GSSVG+SK + E+ A+ LA+++D + IVEQGI+ REIE AVLGN++ + Sbjct: 175 PMFVKPANMGSSVGISKAENREELQNALALAYQYDSRAIVEQGIEAREIEVAVLGNEDVR 234 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 + GE+V FY YD KYI+ ++ +PA + E+ K + A AY LG +G++R Sbjct: 235 TTLPGEVVKDVAFYDYDAKYINNK-IEMQIPAEVPEEVYQKAQEYAKIAYTMLGGSGLSR 293 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 D FLT +NE+ +NE+NT+PGFT SMYP LW+ GL Y DLI LI+L + R Sbjct: 294 CDFFLTNKNELFLNELNTMPGFTQFSMYPLLWENMGLKYGDLIEELIQLGINRFNQRQ 351 >gb|AAB17902.2| (U39790) D-alanine:D-alanine ligase [Enterococcus faecium] Length = 358 Score = 363 bits (932), Expect = 2e-99 Identities = 139/358 (38%), Positives = 215/358 (59%), Gaps = 10/358 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ +++GG+SAEHEVS+ SA ++++AI + + V L+ I K+GQW + D Sbjct: 1 MKITLLYGGRSAEHEVSILSAFSVLNAIYYNYYQVQLVFITKEGQWVKGPLLTEKPASKD 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 H++ PS + GK G+ ++FP++HG GEDG++QG L Sbjct: 61 VLHLSWDPSGQTEEGFTGK------VINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETL 114 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRHNISFAEVESKLGL 180 N+P+VG+ VL SA MDK +TK +L+ AG+ P++ + + F + E L Sbjct: 115 NMPYVGAGVLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLY 174 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+FVKPAN GSSVG++K + E+ A+ A+++D + IVEQGI+ REIE AVLGN++ + Sbjct: 175 PMFVKPANMGSSVGITKAENREELQNALATAYQYDSRAIVEQGIEAREIEVAVLGNEDVR 234 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 + GE+V FY Y+ KYI+ ++ +PA + E+ K + A AY LG +G++R Sbjct: 235 TTLPGEVVKDVAFYDYEAKYINNK-IEMQIPAEVPEEVYQKAQEYAKLAYTMLGGSGLSR 293 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 D FLT +NE+ +NE+N++PGFT SMYP LW+ GL Y DLI LI+L + R+ Sbjct: 294 CDFFLTNKNELFLNELNSMPGFTEFSMYPLLWENMGLKYGDLIEELIQLGMNRYHQRQ 351 >gb|AAG49141.1|AF215736_1 (AF215736) D-alanine:D-alanine ligase [Enterococcus faecium] Length = 358 Score = 359 bits (922), Expect = 3e-98 Identities = 138/358 (38%), Positives = 214/358 (59%), Gaps = 10/358 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ +++GG+SA HEVS+ SA ++++AI + + V L+ I K+GQW + D Sbjct: 1 MKITLLYGGRSAGHEVSILSAFSVLNAIYYNYYQVQLVFITKEGQWVKGPLLTEKPASKD 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 H++ PS + GK G+ ++FP++HG GEDG++QG L Sbjct: 61 VLHLSWDPSGQTEEGFTGK------VINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETL 114 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRHNISFAEVESKLGL 180 N+P+VG+ VL SA MDK +TK +L+ AG+ P++ + + F + E L Sbjct: 115 NMPYVGAGVLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLY 174 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+FVKPAN GSSVG++K + E+ A+ A+++D + IVEQGI+ REIE AVLGN++ + Sbjct: 175 PMFVKPANMGSSVGITKAENREELQNALATAYQYDSRAIVEQGIEAREIEVAVLGNEDVR 234 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 + GE+V FY Y+ KYI+ ++ +PA + E+ K + A AY LG +G++R Sbjct: 235 TTLPGEVVKDVAFYDYEAKYINNK-IEMQIPAEVPEEVYQKAQEYAKLAYTMLGGSGLSR 293 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 D FLT +NE+ +NE+N++PGFT SMYP LW+ GL Y DLI LI+L + R+ Sbjct: 294 CDFFLTNKNELFLNELNSMPGFTEFSMYPLLWENMGLKYGDLIEELIQLGMNRYHQRQ 351 >ref|NP_372607.1| (NC_002758) D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus Mu50] ref|NP_375191.1| (NC_002745) D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus N315] dbj|BAB43170.1| (AP003136) D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus N315] dbj|BAB58245.1| (AP003364) D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus Mu50] Length = 356 Score = 345 bits (886), Expect = 4e-94 Identities = 147/367 (40%), Positives = 220/367 (59%), Gaps = 15/367 (4%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K + IVFGGKSAEHEVS+ +A+N+++AIDK ++ V ++ I G W + + Sbjct: 1 MTKENICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIK 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + D H+ A ++Q+ + D +FP++HG GEDG++QG+ Sbjct: 61 STDELHLE-NGEALEISQLLKESSSG----------QPYDAVFPLLHGPNGEDGTIQGLF 109 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS---FAEVESK 177 V ++P+VG+ VL++A+ MDK V K+L GL P+I+ R+ V K Sbjct: 110 EVLDVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDK 169 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 L P+FVKPAN GSSVG+SK +E + + AF+FD K+++EQG+ REIE AVLGND Sbjct: 170 LNYPVFVKPANLGSSVGISKCNNEAELKEGIKEAFQFDRKLVIEQGVNAREIEVAVLGND 229 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 P+A+ GE+V FY Y +KY D ++ +PA + ++ +R +A++A++ C+G Sbjct: 230 YPEATWPGEVVKDVAFYDYKSKYKDGK-VQLQIPADLDEDVQLTLRNMALEAFKATDCSG 288 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 + R D F+T +N++ INE N +PGFT SMYPKLW+ GL Y +LIT+LIELA ERH Sbjct: 289 LVRADFFVTEDNQIYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELAKERHQDK 348 Query: 358 NALKTTM 364 K + Sbjct: 349 QKNKYKI 355 >ref|NP_388337.1| (NC_000964) D-alanyl-D-alanine ligase A [Bacillus subtilis] sp|P96612|DDL_BACSU D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||D69613 D-alanine--D-alanine ligase (EC 6.3.2.4) A ddlA - Bacillus subtilis dbj|BAA19293.1| (AB001488) PROBABLE D-ALANINE--D-ALANINE LIGASE A [Bacillus subtilis] emb|CAB12263.1| (Z99106) D-alanyl-D-alanine ligase A [Bacillus subtilis] Length = 354 Score = 342 bits (879), Expect = 2e-93 Identities = 153/358 (42%), Positives = 219/358 (60%), Gaps = 8/358 (2%) Query: 9 VFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIA 68 ++GGKSAEH VSLQ+A ++ A++ +FD+ + I ++G+W ++ Sbjct: 1 MYGGKSAEHNVSLQTALAVIKALNTEKFDIHPIYITEKGEWVRGARLTEPVSNVKMLQFE 60 Query: 69 LRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFV 128 SA S P ++ + Q +DV+FP++HG GEDG++QGML + N+P+V Sbjct: 61 QGGSAFS----PAALNQEMFPQEASQQNEAIDVVFPLLHGPNGEDGTIQGMLELLNIPYV 116 Query: 129 GSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN---RHNISFAEVESKLGLPLFVK 185 G+ VLAS+A MDK V K L GL A + + + S EVE +LG P FVK Sbjct: 117 GNGVLASSAGMDKVVMKHLFAQVGLAQAKYAAFLKKDWTRSPKESCEEVEQELGYPCFVK 176 Query: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTCG 245 PAN GSSVG+SK + E+ A +LAF++D KV+VE+GI GREIE VLGND+P+ S G Sbjct: 177 PANLGSSVGISKCRNREELQKAFELAFQYDRKVVVEEGINGREIEIGVLGNDDPKCSVVG 236 Query: 246 EIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFL 305 EI +DFY Y KY D D + +PA + E I +A++A++ + +G+ R D FL Sbjct: 237 EIAPKTDFYDYKAKYEDGDTDLM-IPAIVTDEEYATISDMAIKAFKAIDGSGLVRADFFL 295 Query: 306 TPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALKTT 363 T + EV+INE+NT+PGFT SM+P LW+ +G+ Y DLI +L+ELA ERHA +K T Sbjct: 296 TADGEVLINEVNTMPGFTPFSMFPLLWKEAGVEYADLIEQLVELAKERHAEKQLIKHT 353 >emb|CAB64487.1| (AJ243059) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 341 bits (874), Expect = 9e-93 Identities = 130/357 (36%), Positives = 204/357 (56%), Gaps = 14/357 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A++ +RF V I + G + + + + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVNYNRFTVKTFFISQSGDFIKTQEFSQTPGQE 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D V+FP++HG +GEDGS+QG L V Sbjct: 62 DRLMTNATIDWDKQV-------------VPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEV 108 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P+ Sbjct: 109 LKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPV 168 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 F KP+N GSSVG+SK ++E+ A+ LAF++D +V+VEQG+ REIE +LGN + +++ Sbjct: 169 FTKPSNMGSSVGISKSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKST 228 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G++R D Sbjct: 229 LPGEVVKDVAFYDYDAKYIDNK-ITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCD 287 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 F T + E+ +NE+NT+PGFT SMYP LW G+ Y+DLI L++LA + A Sbjct: 288 FFYTDKGEIFLNELNTMPGFTQWSMYPLLWDNMGISYSDLIEHLVDLAKQSFDKREA 344 >ref|NP_346110.1| (NC_003028) D-alanine--D-alanine ligase [Streptococcus pneumoniae TIGR4] gb|AAK75750.1| (AE007460) D-alanine--D-alanine ligase [Streptococcus pneumoniae TIGR4] Length = 347 Score = 340 bits (872), Expect = 2e-92 Identities = 132/357 (36%), Positives = 203/357 (55%), Gaps = 14/357 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A+D RF V I + G + + ++ + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQE 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D V+FP++HG +GEDGS+QG L V Sbjct: 62 DRLMTNETIDWDKKVA-------------PSAIYEEGAVVFPVLHGPMGEDGSVQGFLEV 108 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P+ Sbjct: 109 LKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPV 168 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +LGN + +++ Sbjct: 169 FTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKST 228 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 GE+V FY YD KYID + + +PA I+ ++ +R A A++ +G G++R D Sbjct: 229 LPGEVVKDVAFYDYDAKYIDNN-ITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCD 287 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 F T + E+ +NE+NT+PGFT SMYP LW G+ Y LI RL++LA E A Sbjct: 288 FFYTDKGEIFLNELNTMPGFTQWSMYPLLWDNMGISYPKLIERLVDLAKESFDKREA 344 >sp|O54631|DDL_STRPN D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAC95435.1| (AF068901) D-Ala-D-Ala ligase [Streptococcus pneumoniae] Length = 347 Score = 339 bits (870), Expect = 2e-92 Identities = 131/357 (36%), Positives = 203/357 (56%), Gaps = 14/357 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A++ RF V I + G + + ++ + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSHAPGQE 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D V+FP++HG +GEDGS+QG L V Sbjct: 62 DRLMTNETIDWDKKVA-------------PSAIYEEGAVVFPVLHGPMGEDGSVQGFLEV 108 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P+ Sbjct: 109 LKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPV 168 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +LGN + +++ Sbjct: 169 FTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKST 228 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G++R D Sbjct: 229 LPGEVVKDVAFYDYDAKYIDNK-ITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCD 287 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 F T + E+ +NE+NT+PGFT SMYP LW G+ Y +LI RL++LA E A Sbjct: 288 FFYTDKGEIFLNELNTMPGFTQWSMYPLLWDNMGISYPELIERLVDLAKESFDKREA 344 >emb|CAB64471.1| (AJ243055) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 339 bits (870), Expect = 3e-92 Identities = 130/357 (36%), Positives = 202/357 (56%), Gaps = 14/357 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A++ RF V I + G + + + + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQE 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D V+FP++HG +GEDGS+QG L V Sbjct: 62 DRLMTNATIDWDKKVA-------------PSAIYEEEAVVFPVLHGPMGEDGSVQGFLEV 108 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+VG ++L+S+ MDK TKR+L G+ P++ + + AEVE KL P+ Sbjct: 109 LKMPYVGCNILSSSLAMDKITTKRVLESTGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPV 168 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 F KP+N GSSVG+SK ++E+ A+ LAF++D +V+VEQG+ REIE +LGN + +++ Sbjct: 169 FTKPSNMGSSVGISKSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKST 228 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G++R D Sbjct: 229 LPGEVVKDVAFYDYDAKYIDNK-ITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCD 287 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 F T + E+ +NE+NT+PGFT SMYP LW G+ Y +LI RL++LA E A Sbjct: 288 FFYTDKGEIFLNELNTMPGFTQWSMYPLLWDNMGISYPELIERLVDLAKESFDKREA 344 >emb|CAB64475.1| (AJ243056) D-ala,D-ala ligase [Streptococcus pneumoniae] emb|CAB64479.1| (AJ243057) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 339 bits (869), Expect = 3e-92 Identities = 132/357 (36%), Positives = 203/357 (55%), Gaps = 14/357 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A+D RF V I + G + + ++ + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQE 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D V+FP++HG +GEDGS+QG L V Sbjct: 62 DRLMTNETIDWDKKVA-------------PSAIYEEGAVVFPVLHGPMGEDGSVQGFLEV 108 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P+ Sbjct: 109 LKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPV 168 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +LGN + +++ Sbjct: 169 FTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKST 228 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G++R D Sbjct: 229 LPGEVVKDVAFYDYDAKYIDNK-ITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCD 287 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 F T + E+ +NE+NT+PGFT SMYP LW G+ Y +LI RL++LA E A Sbjct: 288 FFYTDKGEIFLNELNTMPGFTQWSMYPLLWDNMGISYPELIERLVDLAKESFDKREA 344 >emb|CAB64459.1| (AJ243052) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 337 bits (866), Expect = 7e-92 Identities = 131/357 (36%), Positives = 202/357 (55%), Gaps = 14/357 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A++ RF V I + G + ++ + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDSIKTQEFSHAPGQE 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D V+FP++HG +GEDGS+QG L V Sbjct: 62 DRLMTNETIDWDKKVA-------------PSAIYEEGAVVFPVLHGPMGEDGSVQGFLEV 108 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P+ Sbjct: 109 LKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPV 168 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +LGN + +++ Sbjct: 169 FTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKST 228 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G++R D Sbjct: 229 LPGEVVKDVAFYDYDAKYIDNK-VTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCD 287 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 F T + E+ +NE+NT+PGFT SMYP LW G+ Y +LI RL++LA E A Sbjct: 288 FFYTDKGEIFLNELNTMPGFTQWSMYPLLWDNMGISYPELIERLVDLAKESFDKREA 344 >ref|NP_359108.1| (NC_003098) D-alanine-D-alanine ligase [Streptococcus pneumoniae R6] gb|AAL00319.1| (AE008520) D-alanine-D-alanine ligase [Streptococcus pneumoniae R6] Length = 347 Score = 337 bits (866), Expect = 7e-92 Identities = 132/357 (36%), Positives = 204/357 (56%), Gaps = 14/357 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A+D RF V I + G + + ++ + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQE 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D V+FP++HG +GEDGS+QG L V Sbjct: 62 DRLMTNETIDWDKKVA-------------PSAIYEEGAVVFPVLHGPMGEDGSVQGFLEV 108 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P+ Sbjct: 109 LKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPV 168 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +LGN + +++ Sbjct: 169 FTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKST 228 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G++R D Sbjct: 229 LPGEVVKDVAFYDYDAKYIDNK-VTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCD 287 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 F T + E+ +NE+NT+PGFT SMYP LW+ G+ Y +LI RL++LA E A Sbjct: 288 FFYTDKGEIFLNELNTMPGFTQWSMYPLLWENMGISYPELIERLVDLAKESFDKREA 344 >emb|CAB64463.1| (AJ243053) D-ala,D-ala ligase [Streptococcus pneumoniae] emb|CAB64467.1| (AJ243054) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 337 bits (865), Expect = 9e-92 Identities = 131/357 (36%), Positives = 203/357 (56%), Gaps = 14/357 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A++ RF V I + G + ++ + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDSIKTQEFSHAPGQE 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D V+FP++HG +GEDGS+QG L V Sbjct: 62 DRLMTNETIDWDKKVA-------------PSAIYEEGAVVFPVLHGPMGEDGSVQGFLEV 108 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P+ Sbjct: 109 LKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPV 168 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +LGN + +++ Sbjct: 169 FTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKST 228 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G++R D Sbjct: 229 LPGEVVKDVAFYDYDAKYIDNK-VTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCD 287 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 F T + E+ +NE+NT+PGFT SMYP LW+ G+ Y +LI RL++LA E A Sbjct: 288 FFYTDKGEIFLNELNTMPGFTQWSMYPLLWENMGISYPELIERLVDLAKESFDKREA 344 >emb|CAB64483.1| (AJ243058) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 337 bits (865), Expect = 1e-91 Identities = 129/357 (36%), Positives = 202/357 (56%), Gaps = 14/357 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A++ RF V I + G + + + + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQE 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D V+FP++HG +GEDGS+QG L V Sbjct: 62 DRLMTNATIDWDKQVA-------------PSAIYEEGAVVFPVLHGPMGEDGSVQGFLEV 108 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P+ Sbjct: 109 LKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDLTAKIAEVEEKLTYPV 168 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 F KP+N GSSVG+SK ++E+ A+ LAF++D +V+VEQG+ REIE +LGN + +++ Sbjct: 169 FTKPSNMGSSVGISKSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKST 228 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G++R + Sbjct: 229 LPGEVVKDVAFYDYDAKYIDNK-ITMDIPAKISDDVVPIMRQNAKTAFRAIGGLGLSRCN 287 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 F T + E+ +N++NT+PGFT SMYP LW + Y DLI RL++LA E A Sbjct: 288 FFYTDKGEISLNKLNTMPGFTQWSMYPLLWDNMRISYPDLIERLVDLAKESFDKREA 344 >gb|AAF36803.1|AF155139_2 (AF155139) putative D-alanyl-D-alanine ligase VanE [Paenibacillus popilliae] Length = 343 Score = 336 bits (863), Expect = 2e-91 Identities = 126/357 (35%), Positives = 207/357 (57%), Gaps = 20/357 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +L++ I+FGG S EH+VS++SAK I + ID +++ + +GI + G W + + + Sbjct: 1 MNRLKIAILFGGCSEEHDVSVKSAKEIANNIDTEKYEPIYIGITRSGVWKMCEKPCMDWD 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQN-GQPLPTVDVIFPIVHGTLGEDGSLQGM 119 ++ S P K H L+ +N G + +D +F ++HG GEDG++QG+ Sbjct: 61 NENCR---------SAVLSPDKKMHGLLVMRNKGYQIQRIDAVFSVLHGKSGEDGAIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++++P+VG DV +SA CMDK +T + ++AG F+ L + + + L Sbjct: 112 FELSSIPYVGCDVQSSAVCMDKSLTYIVAQNAGFGTPEFLILNHGDIPDS------NTLT 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GV+KV +E++ A++ A ++D KV++EQ + G E+ CAVLGN + Sbjct: 166 YPVFVKPARSGSSFGVNKVNNEDELDAAIETARQYDSKVLIEQAVPGLEVGCAVLGNGTD 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L+ + + E G++ V+VPA ++ E KI+ A Y+ LGC Sbjct: 226 LIVGEVDQISLSHGIFRIHQEDQPEKGSENAVVLVPANLSAEKRIKIQETAKAIYKALGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 G++RVD+FL +++NE+NTLPGFT S YP++ A+G+ + LI I LAL+ Sbjct: 286 KGLSRVDMFLQENGRIILNEVNTLPGFTAYSRYPRMMAAAGMTLSGLIDHCITLALK 342 >sp|P25051|VANA_ENTFC VANCOMYCIN/TEICOPLANIN A-TYPE RESISTANCE PROTEIN VANA (VANA LIGASE) (D-ALANINE--D-LACTATE LIGASE) pir||CESOVM vancomycin resistance protein vanA - Enterococcus faecium plasmid pIP816 emb|CAA40215.1| (X56895) VANA ligase [Enterococcus faecium] gb|AAA65956.1| (M97297) vanA [Transposon Tn1546] Length = 343 Score = 336 bits (862), Expect = 2e-91 Identities = 130/357 (36%), Positives = 203/357 (56%), Gaps = 20/357 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I I+K +++ + +GI K G W + + Sbjct: 1 MNRIKVAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGM 119 D+ S P K H L+ +N + + VDV F +HG GEDGS+QG+ Sbjct: 61 NDN---------CYSAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +PFVG D+ +SA CMDK +T + ++AG+ F + + +R V + Sbjct: 112 FELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRP------VAATFT 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GV KV S ++ A++ A ++D K+++EQ + G E+ CAVLGN Sbjct: 166 YPVFVKPARSGSSFGVKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAA 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L + + E G++ + VPA ++ E +I+ A + Y+ LGC Sbjct: 226 LVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETAKKIYKALGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 G+ARVD+FL +V+NE+NTLPGFT+ S YP++ A+G+ +LI RLI LAL+ Sbjct: 286 RGLARVDMFLQDNGRIVLNEVNTLPGFTSYSRYPRMMAAAGIALPELIDRLIVLALK 342 >emb|CAB61227.1| (Y15704) vana protein [Bacillus circulans] Length = 343 Score = 335 bits (859), Expect = 4e-91 Identities = 129/357 (36%), Positives = 201/357 (56%), Gaps = 20/357 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I IDK +++ + +GI K G W + + Sbjct: 1 MNRIKVAILFGGCSEEHDVSVKSAIEIAANIDKEKYETLYIGITKSGVWKMCEKPCVEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGM 119 D+ S P K H L+ +N + + VDV F ++HG GEDGS+QG+ Sbjct: 61 NDNCC---------SAVLSPDKKMHGLLVKKNHEYEIDHVDVAFSVLHGKSGEDGSIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +PFVG D+ +SA CMDK +T + +AG+ F + ++ + Sbjct: 112 FELSGIPFVGCDIQSSAICMDKSLTYIVAENAGIATPEFWVFNKDDKP------MADTFT 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN- 238 P+FVKPA GSS GV KV ++ A++LA ++D K+++EQ + G E+ CAVLGN + Sbjct: 166 YPVFVKPARSGSSFGVKKVNGADELDAAIELAGQYDSKILIEQAVLGCEVGCAVLGNSSA 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L + + E G++ + VPA ++ E +I+ A + Y LGC Sbjct: 226 FVVGEVDQIRLQHGIFRIHQEAEPEKGSENAVITVPADLSAEERGRIQETAKKIYNALGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 G+ARVD+FL +V+NE+NTLPGFT+ S YP++ A G+ + +LI RLI LAL+ Sbjct: 286 RGLARVDMFLQDNGRIVLNEVNTLPGFTSYSRYPRMMAAVGIAFPELIDRLIVLALK 342 >ref|NP_266497.1| (NC_002662) D-alanine-D-alanine ligase (EC 6.3.2.4) [Lactococcus lactis subsp. lactis] sp|Q9CIL5|DDL_LACLA D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAK04439.1|AE006271_2 (AE006271) D-alanine-D-alanine ligase (EC 6.3.2.4) [Lactococcus lactis subsp. lactis] Length = 349 Score = 334 bits (858), Expect = 5e-91 Identities = 129/358 (36%), Positives = 206/358 (57%), Gaps = 15/358 (4%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K + +++GG+SAE EVS+ SA++++ A++ SRF V I K G++ + Sbjct: 1 MSKETLILLYGGRSAEREVSVLSAESVMRAVNYSRFVVKTYFITKGGEFIKTQEFTDKPA 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 ++ LA+ K V+FP++HG +GEDGS+QG L Sbjct: 61 EEEKL------LTNDLAESYPK-------ISPAAIYEKAAVVFPVLHGPMGEDGSIQGFL 107 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + L +VG ++L++++ MDK + K + G+ P++ EV KL Sbjct: 108 EILRLAYVGPNILSASSTMDKLLAKHVFEAVGVPQVPYVAAFADENQGEIAQEVVEKLEF 167 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-NP 239 P+FVKPAN GSSVG+SKV A+ A+++D++V++EQG+ REIECAVLGN+ + Sbjct: 168 PVFVKPANMGSSVGISKVDDLADLQPALSEAYKYDNRVVIEQGVDAREIECAVLGNNSDV 227 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 A+ GE+V +FY Y++KYID ++ +PA + ++ K++ A++AY+ + G++ Sbjct: 228 SATLPGEVVKDVEFYDYNSKYIDNK-IQMDIPAKVPADLAQKMQEYAIKAYKAVNGTGLS 286 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 R D F+T + V +NEIN +PGFT SMYP LW+ GL Y+DLI +L++LA E Sbjct: 287 RCDFFVTKDGNVYLNEINAIPGFTQWSMYPLLWENMGLSYSDLIEKLVDLAKETFETR 344 >sp|Q06893|VANB_ENTFC VANCOMYCIN B-TYPE RESISTANCE PROTEIN VANB (VANB LIGASE) (D-ALANINE--D-LACTATE LIGASE) gb|AAC43217.1| (U00456) D-alanine:D-alanine ligase-related protein induced by vancomycin [Enterococcus faecalis] gb|AAB05627.1| (U35369) D-Ala:D-Lac ligase [Enterococcus faecalis] prf||2007289A D-Ala lactate ligase [Enterococcus faecalis] Length = 342 Score = 334 bits (856), Expect = 1e-90 Identities = 129/358 (36%), Positives = 205/358 (57%), Gaps = 21/358 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K++V I+FGG S EH+VS++SA I I+ +FD +GI K G W + Sbjct: 1 MNKIKVAIIFGGCSEEHDVSVKSAIEIAANINTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGM 119 AD + P + H L+ + + +DV FP++HG GEDG++QG+ Sbjct: 61 AD----------SLPAIFSPDRKTHGLLVMKEREYETRRIDVAFPVLHGKCGEDGAIQGL 110 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 111 FELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIEKGDKPE------ARTLT 164 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GV+KV S E+ A++ A ++D K+++EQ I G E+ CAV+GN+ + Sbjct: 165 YPVFVKPARSGSSFGVTKVNSTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDD 224 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L+ + + E G++ ++VPA I E ++++ A + Y+ LGC Sbjct: 225 LIVGEVDQIRLSHGIFRIHQENEPEKGSENAMIIVPADIPVEERNRVQETAKKVYRVLGC 284 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+ARVD+FL + +V+NE+NTLPGFT+ S YP++ A+G+ LI LI LA+ER Sbjct: 285 RGLARVDLFLQEDGGIVLNEVNTLPGFTSYSRYPRMAAAAGITLPALIDSLITLAIER 342 >pdb|1E4E|A Chain A, D-Alanyl-D-Lacate Ligase Length = 343 Score = 334 bits (856), Expect = 1e-90 Identities = 129/357 (36%), Positives = 203/357 (56%), Gaps = 20/357 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I I+K +++ + +GI K G W + + Sbjct: 1 MNRIKVAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGM 119 ++ S P K H L+ +N + + VDV F +HG GEDGS+QG+ Sbjct: 61 NEN---------CYSAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +PFVG D+ +SA CMDK +T + ++AG+ F + + +R V + Sbjct: 112 FELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRP------VAATFT 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GV KV S ++ A++ A ++D K+++EQ + G E+ CAVLGN Sbjct: 166 YPVFVKPARSGSSFGVKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAA 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L + + E G++ + VPA ++ E +I+ + Y+TLGC Sbjct: 226 LVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETVKKIYKTLGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 G+ARVD+FL +V+NE+NTLPGFT+ S YP++ A+G+ +LI RLI LAL+ Sbjct: 286 RGLARVDMFLQDNGRIVLNEVNTLPGFTSYSRYPRMMAAAGISLPELIDRLIVLALK 342 >emb|CAB63849.1| (AJ243051) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 333 bits (855), Expect = 1e-90 Identities = 130/357 (36%), Positives = 203/357 (56%), Gaps = 14/357 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A+D RF V I + G + + ++ + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQE 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D V+FP++HG +GEDGS+QG L V Sbjct: 62 DRLMTNETIDWDKKVA-------------PSAIYEEGAVVFPVLHGPMGEDGSVQGFLEV 108 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P+ Sbjct: 109 LKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPV 168 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 F KP+N G SVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +LGN + +++ Sbjct: 169 FTKPSNMGCSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKST 228 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G++R + Sbjct: 229 LPGEVVKDVAFYDYDAKYIDNK-VTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCN 287 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 F T + E+ +NE+NT+PGFT SMYP LW+ G+ Y +LI RL++LA E A Sbjct: 288 FFYTDKGEIFLNELNTMPGFTQWSMYPLLWENMGISYPELIERLVDLAKESFDKREA 344 >pdb|1E4E|B Chain B, D-Alanyl-D-Lacate Ligase Length = 343 Score = 332 bits (852), Expect = 3e-90 Identities = 129/357 (36%), Positives = 203/357 (56%), Gaps = 20/357 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I I+K +++ + +GI K G W + + Sbjct: 1 MNRIKVAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGM 119 ++ S P K H L+ +N + + VDV F +HG GEDGS+QG+ Sbjct: 61 NEN---------CYSAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +PFVG D+ +SA CMDK +T + ++AG+ F + + +R V + Sbjct: 112 FELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRP------VAATFT 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GV KV S ++ A++ A ++D K+++EQ + G E+ CAVLGN Sbjct: 166 YPVFVKPARSGSSFGVKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAA 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L + + E G++ + VPA ++ E +I+ + Y+TLGC Sbjct: 226 LVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETVKKIYKTLGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 G+ARVD+FL +V+NE+NTLPGFT+ S YP++ A+G+ +LI RLI LAL+ Sbjct: 286 RGLARVDMFLQDRGRIVLNEVNTLPGFTSYSRYPRMMAAAGISLPELIDRLIVLALK 342 >gb|AAG37026.1|AF277571_3 (AF277571) D-alanine:D-lactate ligase [Enterococcus faecium] Length = 343 Score = 332 bits (851), Expect = 4e-90 Identities = 122/358 (34%), Positives = 201/358 (56%), Gaps = 20/358 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M KL++ ++FGG S EH+VS++SA + I+K ++ +GI K G W + D Sbjct: 1 MYKLKIAVLFGGCSEEHDVSVKSAMEVAANINKEKYQPFYIGITKSGAWKLCDKPCRDWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQ-NGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 P + H L+ + G VDV+ P++HG GEDG++QG+ Sbjct: 61 NYA---------GYPAVISPDRRIHGLLIQKDGGYESQPVDVVLPMIHGKFGEDGTIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L ++ +P+VG D+ +S CMDK + ++++AG+ + F L + + L Sbjct: 112 LELSGIPYVGCDIQSSVICMDKSLAYMVVKNAGIEVPGFRVLQKGDSLE------AETLS 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GV+KV E+ AV A ++D K++VE+ + G E+ CA+LGN + Sbjct: 166 YPVFVKPARSGSSFGVNKVCRAEELQAAVTEAGKYDSKILVEEAVSGSEVGCAILGNGND 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L F+ + E G++ + VPAA+ E+ ++I+ A + Y+ LGC Sbjct: 226 LITGEVDQIELKHGFFKIHQEAQPEKGSENAVIRVPAALPDEVREQIQETAKKIYRVLGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+AR+D+FL + +V+NE+NT+PGFT+ S YP++ A+G ++++ RLI L+L R Sbjct: 286 RGLARIDLFLREDGSIVLNEVNTMPGFTSYSRYPRMMTAAGFTLSEILDRLIGLSLRR 343 >ref|NP_269512.1| (NC_002737) putative D-ala,D-ala ligase [Streptococcus pyogenes] [Streptococcus pyogenes M1 GAS] gb|AAK34233.1| (AE006579) putative D-ala,D-ala ligase [Streptococcus pyogenes M1 GAS] Length = 348 Score = 331 bits (850), Expect = 5e-90 Identities = 125/357 (35%), Positives = 200/357 (56%), Gaps = 14/357 (3%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K + +++GG+SAE EVS+ SA++++ A++ +F V I + GQ+ + + + Sbjct: 1 MSKQTLVLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQMGQFIKTQQFSEKPS 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + ++ K + V+FP++HG +GEDGS+QG L Sbjct: 61 ESERLM------TNETIELTQK-------IKPSDIYEEGAVVFPVLHGPMGEDGSIQGFL 107 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 V +P++G++V++S+ MDK TKR+L G+ + E ++L Sbjct: 108 EVLRMPYIGTNVMSSSIAMDKITTKRVLESIGIPQVAYTVYIDGQDLEACLVETLARLTF 167 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+FVKPAN GSSVG+SK ++ + A+ LA +D +V++EQG+ REIE +LGND + Sbjct: 168 PIFVKPANMGSSVGISKAQTKVELRKAIQLALTYDSRVLIEQGVVAREIEVGLLGNDKVK 227 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 ++ GE++ DFY Y KY+D + +PA + I ++R+ A A++ LG G++R Sbjct: 228 STLPGEVIKDVDFYDYQAKYVDNK-ITMAIPADVDQSIVTEMRSYAEVAFKALGGCGLSR 286 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 D FLT + +V +NE+NT+PGFT SMYP LW+ GL Y DLI L+ LA E Sbjct: 287 CDFFLTQDGQVYLNELNTMPGFTQWSMYPLLWENMGLAYPDLIEELVTLAQEMFDQR 343 >sp|Q47758|DDL_ENTFA D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) Length = 348 Score = 331 bits (849), Expect = 7e-90 Identities = 138/355 (38%), Positives = 213/355 (59%), Gaps = 10/355 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ +++GG+S EH+VS+ SA ++++AI + V L+ I K GQW + + Sbjct: 1 MKIILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKE 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 H+ + + GK + ++FP++HG GEDG++QG + Sbjct: 61 VLHLTWAQTPEETGEFSGKR------ISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETI 114 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN---RHNISFAEVESKLGL 180 N+P+VG+ VLAS MDK +TK LL+ G+ PF+ + R++ F + E L Sbjct: 115 NMPYVGAGVLASVNAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIY 174 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+FVKPAN GSSVG+SKV + E+ A++ AF +D + IVEQGI+ REIE A+LGN++ + Sbjct: 175 PVFVKPANMGSSVGISKVENREELQEALEEAFRYDARAIVEQGIEAREIEVAILGNEDVR 234 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 + GE+V FY YD KYI + ++ +PA + E+ + + A +AY L +G++R Sbjct: 235 TTLPGEVVKDVAFYDYDAKYI-NNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSR 293 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 D FLT +NE+ +NE+NT+PGFT+ SMYP LW+ GL Y+DLI LI+LAL R Sbjct: 294 CDFFLTSKNELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLALNRFK 348 >gb|AAF72363.1|AF192329_24 (AF192329) VanB [Enterococcus faecalis] Length = 342 Score = 331 bits (849), Expect = 7e-90 Identities = 127/358 (35%), Positives = 203/358 (56%), Gaps = 21/358 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I I+ +FD +GI K G W + Sbjct: 1 MNRIKVAIIFGGCSEEHDVSVKSAIEIAANINTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGM 119 AD + P + H L+ + + +DV FP++HG GEDG++QG+ Sbjct: 61 AD----------SLPAILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGL 110 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 111 FELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPE------AGALT 164 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GV+KV E+ A++ A ++D K+++EQ I G E+ CAV+GN+ + Sbjct: 165 YPVFVKPARSGSSFGVTKVNGTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDD 224 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L+ + + E G++ + VPA I E ++++ A + Y+ LGC Sbjct: 225 LIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGC 284 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+ARVD+FL + +V+NE+NTLPGFT+ S YP++ A+G+ LI LI LAL+R Sbjct: 285 RGLARVDLFLQEDGGIVLNEVNTLPGFTSYSRYPRMVAAAGITLPALIDSLITLALKR 342 >gb|AAC43218.1| (U00457) D-alanine:D-alanine ligase-related protein [Enterococcus faecalis] prf||2007289B D-Ala D-Ala ligase [Enterococcus faecalis] Length = 348 Score = 329 bits (845), Expect = 2e-89 Identities = 139/355 (39%), Positives = 213/355 (59%), Gaps = 10/355 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 L++ +++GG+S EH+VS+ SA ++++AI + V L+ I K GQW + + Sbjct: 1 LKIILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKE 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 H+ + + GK + ++FP++HG GEDG++QG + Sbjct: 61 VLHLTWAQTPEETGEFSGKR------ISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETI 114 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN---RHNISFAEVESKLGL 180 N+P+VG+ VLAS MDK +TK LL+ G+ PF+ + R++ F + E L Sbjct: 115 NMPYVGAGVLASVNAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIY 174 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+FVKPAN GSSVG+SKV + E+ A++ AF +D + IVEQGI+ REIE A+LGN++ + Sbjct: 175 PVFVKPANMGSSVGISKVENREELQEALEEAFRYDARAIVEQGIEAREIEVAILGNEDVR 234 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 + GE+V FY YD KYI + ++ +PA + E+ + + A +AY L +G++R Sbjct: 235 TTLPGEVVKDVAFYDYDAKYI-NNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSR 293 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 D FLT +NE+ +NE+NT+PGFT+ SMYP LW+ GL Y+DLI LI+LAL R Sbjct: 294 CDFFLTSKNELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLALNRFK 348 >pir||T35363 D-alanine--D-alanine ligase (EC 6.3.2.4) A SC66T3.06 [similarity] - Streptomyces coelicolor emb|CAB45462.1| (AL079348) putative D-alanine:D-lactate ligase [Streptomyces coelicolor A3(2)] Length = 346 Score = 329 bits (844), Expect = 3e-89 Identities = 136/356 (38%), Positives = 200/356 (55%), Gaps = 20/356 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +L+VGIVFGG S EH VS++SA+ + +D ++ +GI K G W + D Sbjct: 1 MARLKVGIVFGGSSEEHAVSVKSAQEVARNLDTEKYQPFFVGITKDGAWRLCDGPGQDWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLP-TVDVIFPIVHGTLGEDGSLQGM 119 D + P + H L+ + GQ +DV+ P++HGTLGEDG+ QG+ Sbjct: 61 NGDCRPV---------VLSPDRSVHGLLVLEQGQYRSVRLDVVLPVLHGTLGEDGATQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L ++ +P+VG DV +SA CMDK + + R AG+ F T+T + +L Sbjct: 112 LELSGIPYVGCDVQSSALCMDKSLAYVVARSAGIATPDFWTVTGDETID------PGRLT 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GVSKV E A AV+ A +D KV++E + G E+ CA+LGND + Sbjct: 166 YPVFVKPARSGSSFGVSKVCRPEDLATAVESARRYDTKVLIEAAVVGSEVGCAILGNDPD 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 I L+ F+ + E+G++ VVPA I E ++ A Y+ LGC Sbjct: 226 LIVGEVDRIALSHGFFRIHQEEQPENGSENSTPVVPADIPTEKRSLVQETAKAVYRALGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 G++RVD+FL + EVV+NE+NTLPG T+ S YP++ A+GL +++I R + LAL Sbjct: 286 RGLSRVDMFLKEDGEVVLNEVNTLPGMTSYSRYPRMMAAAGLPLSEVIDRTLSLAL 341 >ref|NP_464381.1| (NC_003210) D-alanine--D-alanine ligase [Listeria monocytogenes EGD-e] emb|CAC98933.1| (AL591977) D-alanine--D-alanine ligase [Listeria monocytogenes] Length = 370 Score = 328 bits (841), Expect = 6e-89 Identities = 152/368 (41%), Positives = 226/368 (61%), Gaps = 7/368 (1%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K ++ +++GGKSAEHEVSLQ+A ++++A+D +F+ + I +G+W + L+ Sbjct: 2 KTKLILLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFV 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + + + K E + I + V+FP++HG GEDG++QG+ V Sbjct: 62 EQLRFSATDTIKLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEV 121 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFIT---LTRANRHNISFAEVESKLG 179 N+P+VG+ VLAS+A MDK V K++ DAG+ P + + N AE+E L Sbjct: 122 LNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVAEMEEVLT 181 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+FVKPAN GSSVG+SK T++++ A+ AF +D +V+VEQG+ REIE VLGND P Sbjct: 182 YPVFVKPANLGSSVGISKATNKKELVDAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTP 241 Query: 240 QASTCGEIVLTSD---FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 S GEI+ FY Y KY D + A +++P + PEI ++++ A+QA+ L + Sbjct: 242 VCSVPGEILPEGAVATFYDYKAKYQDNNTA-LIIPTEVDPEILEQMKEYAIQAFLGLDAS 300 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 G+ R D FLT +N++ +NE+NT+PGFT SMYP LWQ +GL Y LI RL++LA ERHAA Sbjct: 301 GLVRADFFLTEDNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLAKERHAA 360 Query: 357 DNALKTTM 364 NALK + Sbjct: 361 KNALKYKL 368 >emb|CAB05883.1| (Z83305) D-alanine:D-alanine ligase-related protein [Enterococcus faecium] gb|AAB39760.1| (U81452) D-alanine:D-alanine ligase-related protein [Enterococcus faecium] gb|AAG34691.1|AF310956_6 (AF310956) D-alanine:D-lactate ligase [Enterococcus faecium] Length = 342 Score = 328 bits (841), Expect = 6e-89 Identities = 127/358 (35%), Positives = 203/358 (56%), Gaps = 21/358 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I ID +FD +GI K G W + Sbjct: 1 MNRIKVAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGM 119 AD + P + H L+ + + +DV FP++HG GEDG++QG+ Sbjct: 61 AD----------SLPAILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGL 110 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 111 FVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPE------AGALT 164 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS G++KV E+ A++ A ++D K+++EQ I G E+ CAV+GN+ + Sbjct: 165 YPVFVKPARSGSSFGLTKVNGTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDD 224 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L+ + + E G++ + VPA I E ++++ A + Y+ LGC Sbjct: 225 LIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGC 284 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+ARVD+FL + +V+NE+NTLPGFT+ S YP++ A+G+ LI LI LAL+R Sbjct: 285 RGLARVDLFLQEDGGIVLNEVNTLPGFTSYSRYPRMMAAAGITLPALIDSLITLALKR 342 >ref|NP_485023.1| (NC_003272) D-alanyl-D-alanine ligase [Nostoc sp. PCC 7120] dbj|BAB72937.1| (AP003584) D-alanyl-D-alanine ligase [Nostoc sp. PCC 7120] Length = 364 Score = 327 bits (840), Expect = 7e-89 Identities = 158/363 (43%), Positives = 223/363 (60%), Gaps = 13/363 (3%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAI----DKSRFDVVLLGIDKQGQWHVSDASNYLL 59 +RVG++FGG+S EHEVS+ SA+ I A+ + S+++++ I K G+W +A +L Sbjct: 1 MRVGLLFGGRSGEHEVSISSARAIASALSAGENASKYEILPFYIHKDGRWLAGEAPQQVL 60 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 + P + S + + L Q+ + VDV FPI+HG GEDG++QG+ Sbjct: 61 KSGAPLLESSNSSPAE-NNLVNSQQQTLERWQSPSQVAEVDVWFPILHGPNGEDGTIQGL 119 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHN------ISFAE 173 L + PFVGS VL SA MDK K AGL + +TRA + E Sbjct: 120 LTLMQTPFVGSGVLGSALGMDKIAMKMAFEQAGLPQVKYKAVTRAQIWSNPCVFPKLCDE 179 Query: 174 VESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAV 233 +E+ LG P FVKPAN GSSVG+SKV S ++ A+D A +D ++I+E G+ RE+ECAV Sbjct: 180 IEASLGYPCFVKPANLGSSVGISKVRSRQELEDALDNAANYDRRIIIEAGVAAREVECAV 239 Query: 234 LGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 LGND PQAST GEI SDFY Y+TKY A +++PA I +I+ +I+ +A+QA+ + Sbjct: 240 LGNDQPQASTVGEITFNSDFYDYETKYTAGK-ADLLIPAIIPDDISRQIQNMALQAFAAV 298 Query: 294 GCAGMARVDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 AG+ARVD F EV+INEINTLPGFT SMYP+LW SG+ + +L+ +L++LA+E Sbjct: 299 DAAGLARVDFFYVEATGEVLINEINTLPGFTATSMYPQLWAHSGIPFPELVDKLVQLAIE 358 Query: 353 RHA 355 RH Sbjct: 359 RHN 361 >gb|AAG34685.1|AF310955_1 (AF310955) ligase VanB2 [Enterococcus faecalis] gb|AAG34693.1|AF310957_1 (AF310957) ligase VanB2 [Enterococcus faecium] Length = 342 Score = 327 bits (839), Expect = 9e-89 Identities = 126/358 (35%), Positives = 202/358 (56%), Gaps = 21/358 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V +FGG S EH+VS++SA I ID +FD +GI K G W + Sbjct: 1 MNRIKVATIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGM 119 AD + P + H L+ + + +DV FP++HG GEDG++QG+ Sbjct: 61 AD----------SLPAILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGL 110 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 111 FVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPE------AGALT 164 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GV+KV E+ A++ A ++D K+++EQ I G E+ CAV+GN+ + Sbjct: 165 YPVFVKPARSGSSFGVTKVNGPEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDD 224 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L+ + + E G++ + VPA I E ++++ A + Y+ LGC Sbjct: 225 LIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGC 284 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+ARVD+FL + +V+NE+NT+PGFT+ S YP++ A+G+ LI LI LAL+R Sbjct: 285 RGLARVDLFLQEDGGIVLNEVNTMPGFTSYSRYPRMVAAAGITLPALIDSLITLALKR 342 >gb|AAF71281.1|AF253562_5 (AF253562) ligase [Enterococcus faecalis] Length = 349 Score = 326 bits (836), Expect = 2e-88 Identities = 133/352 (37%), Positives = 210/352 (58%), Gaps = 3/352 (0%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+ ++ ++FGG S E+EVSLQSA + + I+ ++FD++ +GI + G+W+ + Sbjct: 1 MQNKKIAVIFGGNSTEYEVSLQSASAVFENINTNKFDIIPIGITRSGEWYHYTGEKEKIL 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + + ++Q L A + + VD++FP++HG GE+G+LQG+ Sbjct: 61 NNTWFEDSKNLCPVVVSQNRSVKGF-LEIASDKYRIIKVDLVFPVLHGKNGENGTLQGIF 119 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 +A +P VG D L+SA CMDKD +L+ AG+++ +T R N + E+E+ L Sbjct: 120 ELAGIPVVGCDTLSSALCMDKDRAHKLVSLAGISVPKSVTFKRFNE-EAAMKEIEANLTY 178 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 PLF+KP GSS G++KV +++ A++LAFE D +VIVE+ I G E+ CAVLG D Sbjct: 179 PLFIKPVRAGSSFGITKVIEKQELDAAIELAFEHDTEVIVEETINGFEVGCAVLGIDELI 238 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 EI L+S F+ Y KY +K+ +PA I E +I+ AV Y+ LGC+G +R Sbjct: 239 VGRVDEIELSSGFFDYTEKYTL-KSSKIYMPARIDAEAEKRIQEAAVTIYKALGCSGFSR 297 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 VD+F TP E+V NE+NT+PGFT+ S YP + + GL ++ ++ +LI L +E Sbjct: 298 VDMFYTPSGEIVFNEVNTIPGFTSHSRYPNMMKGIGLSFSQMLDKLIGLYVE 349 >gb|AAG34683.1|AF310953_1 (AF310953) ligase VanB2 [Enterococcus faecium] Length = 342 Score = 325 bits (834), Expect = 3e-88 Identities = 125/358 (34%), Positives = 202/358 (55%), Gaps = 21/358 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V +FGG S EH+VS++SA I ID +FD +GI K G W + Sbjct: 1 MNRIKVATIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGM 119 AD + P + H L+ + + +DV FP++HG GEDG++QG+ Sbjct: 61 AD----------SLPAILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGL 110 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 111 FVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPE------AGALT 164 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS G++KV E+ A++ A ++D K+++EQ I G E+ CAV+GN+ + Sbjct: 165 YPVFVKPARSGSSFGLTKVNGTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDD 224 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L+ + + E G++ + VPA I E ++++ A + Y+ LGC Sbjct: 225 LIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGC 284 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+ARVD+FL + +V+NE+NTLPGFT+ S YP++ A+G+ +I LI LAL+R Sbjct: 285 RGLARVDLFLQEDGGIVLNEVNTLPGFTSYSRYPRMMAAAGITLPAMIDSLITLALKR 342 >gb|AAG34684.1|AF310954_1 (AF310954) ligase VanB2 [Enterococcus faecium] Length = 342 Score = 325 bits (834), Expect = 4e-88 Identities = 126/358 (35%), Positives = 202/358 (56%), Gaps = 21/358 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V +FGG S EH+VS++SA I ID +FD +GI K G W + Sbjct: 1 MNRIKVATIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGM 119 AD + P + H L+ + + +DV FP++HG GEDG++QG+ Sbjct: 61 AD----------SLPAILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGL 110 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 111 FVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPE------AGALT 164 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS G++KV E+ A++ A ++D K+++EQ I G E+ CAV+GN+ + Sbjct: 165 YPVFVKPARAGSSFGLTKVNGTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDD 224 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L+ + + E G++ + VPA I E ++++ A + Y+ LGC Sbjct: 225 LIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGC 284 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+ARVD+FL + +V+NE+NTLPGFT+ S YP++ A+G+ LI LI LAL+R Sbjct: 285 RGLARVDLFLQEDGGIVLNEVNTLPGFTSYSRYPRMMAAAGITLPALIDSLITLALKR 342 >ref|NP_470190.1| (NC_003212) D-alanine--D-alanine ligase [Listeria innocua] emb|CAC96080.1| (AL596166) D-alanine--D-alanine ligase [Listeria innocua] Length = 370 Score = 325 bits (833), Expect = 5e-88 Identities = 152/368 (41%), Positives = 223/368 (60%), Gaps = 7/368 (1%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K ++ +++GGKSAEHEVSLQ+A ++++A+D +F+ + I +G+W + L+ Sbjct: 2 KTKLILLYGGKSAEHEVSLQTAFSVINALDLEKFEAEPIYITNEGEWVQGPLLSGKLDFV 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + + K E + I + V+FP++HG GEDG++QG+ V Sbjct: 62 EQLRFSATDRVKLATAESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEV 121 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFIT---LTRANRHNISFAEVESKLG 179 N+P+VG+ VLAS+A MDK V K++ DAG+ P + + N E+E L Sbjct: 122 LNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVTEMEEVLT 181 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+FVKPAN GSSVG+SK T++ + A+ AF +D +V+VEQG+ REIE VLGND P Sbjct: 182 YPVFVKPANLGSSVGISKATNKTELIEAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTP 241 Query: 240 QASTCGEIVLTSD---FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 S GEI+ FY Y KY D + A +++P + PEI ++++ AVQA+ L + Sbjct: 242 VCSVPGEILPEGAVAKFYDYKAKYQDNNTA-LIIPTEVEPEILEQMKEYAVQAFLGLDAS 300 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 G+ R D FLT +N++ +NE+NT+PGFT SMYP LWQ +GL Y LI RL++LA ERHAA Sbjct: 301 GLVRADFFLTEDNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLAKERHAA 360 Query: 357 DNALKTTM 364 NALK + Sbjct: 361 KNALKYKL 368 >gb|AAD42184.1|AF130997_5 (AF130997) D-alanine:D-lactate ligase [Enterococcus faecium] Length = 343 Score = 324 bits (830), Expect = 1e-87 Identities = 123/358 (34%), Positives = 206/358 (57%), Gaps = 20/358 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V ++FGG S EH VS++SA I ID ++ +GI K G W + + Sbjct: 1 MFRIKVAVLFGGCSEEHNVSIKSAMEIAANIDTKKYQPYYIGITKSGVWKMCEKPCLEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQN-GQPLPTVDVIFPIVHGTLGEDGSLQGM 119 + P + H L+ ++ G + VDV+FP++HG GEDGS+QG+ Sbjct: 61 QYA---------GDPVVFSPDRSTHGLLIQKDKGYEIQPVDVVFPMIHGKFGEDGSIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L ++ +P+VG D+ +S CMDK + ++++AG+ + F L +R Sbjct: 112 LELSGIPYVGCDIQSSVICMDKALAYTVVKNAGITVPGFRILQEGDRLET------EDFV 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GV+KV E+ A++ A ++D K+++E+ + G E+ CA+LGN + Sbjct: 166 YPVFVKPARSGSSFGVNKVCKAEELQAAIEEARKYDSKILIEEAVTGSEVGCAILGNGND 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 A +I L F+ + E G++ + VPAA+ E+ ++I+ A++ Y+ LGC Sbjct: 226 LMAGEVDQIELRHGFFKIHQEAQPEKGSENAVIRVPAALPDEVREQIQETAMKIYRILGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+AR+D+FL + +V+NE+NT+PGFT+ S YP++ A+G ++++ RLIEL+L R Sbjct: 286 RGLARIDLFLREDGCIVLNEVNTMPGFTSYSRYPRMMTAAGFTLSEILDRLIELSLRR 343 >ref|NP_103309.1| (NC_002678) D-alanine-D-alanine ligase A [Mesorhizobium loti] dbj|BAB49095.1| (AP002998) D-alanine-D-alanine ligase A [Mesorhizobium loti] Length = 357 Score = 322 bits (826), Expect = 3e-87 Identities = 160/360 (44%), Positives = 228/360 (62%), Gaps = 9/360 (2%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 EK RV I++GG+SAEH+VS SA N++ AID++R++VV + I + G+W + +S Sbjct: 3 EKTRVAILYGGRSAEHDVSRLSAANVLKAIDRTRYEVVPIAISRDGRWRLQPSS---EAG 59 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 D A + +A +PG + +NG+ VDV+FP++HG GEDGS+QG Sbjct: 60 ADGAGAQVPEDGVEVALLPGGKGRLVALTKNGEQPDPVDVVFPVLHGPFGEDGSVQGYAE 119 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 VA++ +VG +LASAA MDKDV KRLLR+AGL +A +T+ + + SF E+ LGLP Sbjct: 120 VADVAYVGCGILASAAAMDKDVAKRLLREAGLAVARSVTVLKGD--VGSFQEIAGALGLP 177 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL--GNDNP 239 F KPA QGSS GVSKV + + AV+ A +D K ++E+ + GREIEC+VL + + Sbjct: 178 FFAKPARQGSSFGVSKVHDRDGFEQAVETALRYDSKALIEEFVDGREIECSVLERADGSL 237 Query: 240 QASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 S GEI+ FY Y+ KY D +GA V VPA + ++ + +A +A++ LGC Sbjct: 238 TVSPPGEIIPADKHGFYTYEAKYFDAEGAVVKVPADVPADVVARTSEMAARAFRALGCEA 297 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 MARVD FL + +++NE+NTLPGFT+ISMY K A+G+GY+ +I LIE AL RH A Sbjct: 298 MARVDFFLRADGSLLVNEVNTLPGFTDISMYAKALAAAGIGYSKVIDVLIEHALARHRAR 357 >gb|AAD41882.1|AF153050_3 (AF153050) D-alanine:D-lactate ligase [Enterococcus faecium] Length = 343 Score = 320 bits (821), Expect = 1e-86 Identities = 125/358 (34%), Positives = 206/358 (56%), Gaps = 20/358 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K++V ++FGG S EH VS++SA I ID ++ +GI K G W + + Sbjct: 1 MFKIKVAVLFGGCSEEHNVSIKSAMEIAANIDTKKYQPYYIGITKSGVWKMCEKPCLGWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQN-GQPLPTVDVIFPIVHGTLGEDGSLQGM 119 + P + H L+ ++ G + VDV+FP++HG GEDGS+QG+ Sbjct: 61 QYA---------GDPVVFSPDRSTHGLLIQKDTGYEIQPVDVVFPMIHGKFGEDGSIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L ++ +P+VG D+ +S CMDK + ++++AG+ + F L +R L Sbjct: 112 LELSGIPYVGCDIQSSVICMDKALAYTVVKNAGIAVPGFRILQEGDRLET------EDLV 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GV+KV E+ A+ A ++D K+++E+ + G E+ CA+LGN+ + Sbjct: 166 YPVFVKPARSGSSFGVNKVCKAEELQAAIREARKYDSKILIEEAVTGSEVGCAILGNEND 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 A +I L F+ + E G++ + VPAA+ E+ ++IR A++ Y+ LGC Sbjct: 226 LMAGEVDQIELRHGFFKIHQEAQPEKGSENAVIRVPAALPDEVRERIRKTAMKIYRILGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+AR+D+FL + +V+NE+NT+PGFT+ S YP++ A+G ++++ RLIE +L R Sbjct: 286 RGLARIDLFLREDGCIVLNEVNTMPGFTSYSRYPRMMTAAGFTLSEILDRLIEFSLRR 343 >ref|NP_349497.1| (NC_003030) D-alanine-D-alanine ligase [Clostridium acetobutylicum] gb|AAK80837.1|AE007787_3 (AE007787) D-alanine-D-alanine ligase [Clostridium acetobutylicum] Length = 343 Score = 319 bits (819), Expect = 2e-86 Identities = 139/358 (38%), Positives = 217/358 (59%), Gaps = 20/358 (5%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K +V I+FGG+S EHEVS SA +++ ID S++D+ +GI K+G+W S + Sbjct: 2 KKKVAILFGGQSTEHEVSRVSAASVLRNIDTSKYDLFPIGITKKGEWFEYTGSADKIENG 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + S A + K VDV+FP++HG GEDG++QG+ ++ Sbjct: 62 EWEKDEFYKSPNGQAILFNK---------------EVDVVFPVMHGLYGEDGTIQGLCKL 106 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR---HNISFAEVESKLG 179 +P VG VL+S+ CMDK TK +L + A ++ + E+E+KLG Sbjct: 107 VGVPCVGPSVLSSSVCMDKVYTKYVLEHFNIKQADYVVVHAHEYKTSKEEIIKEIENKLG 166 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 +F+KP+N GSSVG++K + ++ ++ A ++D K++VE+ + REIE AVLGN+ P Sbjct: 167 YAVFIKPSNSGSSVGITKAHNRKELEAGLEEAMKYDRKILVEEALNAREIEVAVLGNEEP 226 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 +A+ GEIV +FY Y+ KY + +K+++PA ++ E +KI+ IA++ Y+ L C+GM+ Sbjct: 227 KAAIPGEIVPAKEFYDYEAKY-ENAASKLLIPANLSNENLEKIKNIAIEVYKALDCSGMS 285 Query: 300 RVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 RVD + + E+ +NE+NT+PGFT+ISMYPKLW A+G Y+ LI LIELA R+ A Sbjct: 286 RVDFLVDKDTTEMYLNEVNTIPGFTSISMYPKLWAAAGKDYSKLIDELIELAASRNNA 343 >ref|NP_294085.1| (NC_001263) D-alanine--D-alanine ligase [Deinococcus radiodurans] pir||D75529 D-alanine--D-alanine ligase - Deinococcus radiodurans (strain R1) gb|AAF09941.1|AE001896_6 (AE001896) D-alanine--D-alanine ligase [Deinococcus radiodurans] Length = 339 Score = 317 bits (812), Expect = 1e-85 Identities = 150/355 (42%), Positives = 218/355 (61%), Gaps = 24/355 (6%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K R+ ++ GG+S EHEVSL+SA++++ A+ + +FDV + I KQG+W + L Sbjct: 2 KRRILLLAGGQSGEHEVSLRSARSVLAALPRDQFDVTPVVISKQGRWLPPTETQKALETG 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + + D +FP++HG +GEDG++QG+L + Sbjct: 62 ------------------VSSQGGDLMLHRAAAAEGYDAVFPLLHGPMGEDGTIQGLLTL 103 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHN--ISFAEVESKLGL 180 A +PFVGS VL SA MDK +TK++L AG+ + R + ++LG Sbjct: 104 AGIPFVGSGVLGSAVSMDKVMTKQVLDSAGIPQVAWRLAVRREWQQTPDAVRARAAELGY 163 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGI--KGREIECAVLGNDN 238 PLFVKPAN GSSVG+SKV S E+ A+ LAF D +VI+E K RE+E +LGND Sbjct: 164 PLFVKPANLGSSVGISKVGSPEELDAALTLAFGLDRRVILEAMTPHKPREVEVGILGNDV 223 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 P AS GE+ +DFY Y+TKY + A++ +PA I PE++++IR A++A++ L CAG+ Sbjct: 224 PVASPVGELSFDADFYDYETKYTEGR-AEMHIPARIPPEVSERIRTEALRAFRALDCAGL 282 Query: 299 ARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 ARVD F E E+ +NE+NT+PGFT SMYPKL++A+GL Y++L+TRL+ELALE Sbjct: 283 ARVDFFYVEETGELFLNEVNTMPGFTTTSMYPKLFEAAGLSYSELVTRLVELALE 337 >gb|AAC23582.1| (U82965) D-alanine:D-alanine ligase-related protein [Streptomyces toyocaensis] Length = 340 Score = 315 bits (808), Expect = 4e-85 Identities = 125/349 (35%), Positives = 201/349 (56%), Gaps = 20/349 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +L++GIVFGG+S EH VS++SA+ + +D +++ +GI K G W + D + Sbjct: 1 MARLKIGIVFGGRSEEHPVSIKSAREVARNLDLEKYEPFYIGITKSGAWKLCDGPDAEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDA-QNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 D + L P + H L+ Q G +DV+ P++HG LGEDG++QG+ Sbjct: 61 DGDCRPVVLSPDSDV---------HGLLVLEQGGCSTIRLDVVLPVLHGKLGEDGAMQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L ++ +P+VG D+ +SA CMDK + ++R+AG+ F T+ + ++ Sbjct: 112 LELSGIPYVGCDIQSSAVCMDKSLAYAVVRNAGIATPNFWTVAADETVD------AARFT 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GV+KV+ EE+ + AV+ A ++D KV++E+ + G EI CA+LG + Sbjct: 166 YPVFVKPARSGSSFGVTKVSREEEMSSAVETARQYDSKVLIEEAVPGSEIGCAILGTGTD 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 I L+ F+ + E G++ +VPA I +++ A Y+ LGC Sbjct: 226 LVVGEVDRIALSHGFFRIHQEDSPETGSENSIAIVPADIPEASRLRVQEEAKAVYRVLGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLIT 344 G+ARVD+FL + EVV+NE+NTLPG T+ S YP++ A+GL +++I Sbjct: 286 RGIARVDMFLKEDGEVVLNEVNTLPGLTSYSRYPRMMAAAGLPMSEVID 334 >gb|AAD51060.1|AF175293_5 (AF175293) D-alanine:D-lactate ligase [Enterococcus faecium] Length = 343 Score = 315 bits (807), Expect = 5e-85 Identities = 123/358 (34%), Positives = 204/358 (56%), Gaps = 20/358 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V ++FGG S EH VS++SA I ID ++ +GI K G W + + Sbjct: 1 MFRIKVAVLFGGCSEEHNVSIKSAMEIAANIDTKKYQPYYIGITKSGVWKMCEKPCLEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQN-GQPLPTVDVIFPIVHGTLGEDGSLQGM 119 + P + H L+ ++ G + VDV P++HG GEDGS+QG+ Sbjct: 61 QYA---------GDPVVFSPDRSTHGLLIQKDTGYEIQPVDVGLPMIHGKFGEDGSIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L ++ +P+VG D+ +S CMDK + ++++AG+ + F L +R Sbjct: 112 LELSGIPYVGCDIQSSVTCMDKALAYTVVKNAGIAVPGFRILQEGDRLET------EDFV 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GV+KV E+ A++ A ++D K+++E+ + G E+ CA+LGN + Sbjct: 166 YPVFVKPARSGSSFGVNKVCKAEELQAAIEDARKYDSKILIEEAVTGSEVGCAILGNGND 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 A +I L F+ + E G++ + VPAA+ E+ ++I+ A++ Y+ LGC Sbjct: 226 LMAGEVDQIELRHGFFKIHQEAQPEKGSENAVIRVPAALPDEVIERIQKTAMKIYRILGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+AR+D+FL + +V+NE+NT+PGFT+ S YP++ A+G T+++ RLIEL+L R Sbjct: 286 RGLARIDLFLREDGCIVLNEVNTMPGFTSYSRYPRMMTAAGFTLTEILDRLIELSLRR 343 >sp|Q9ZGN0|DDL_MYCSM D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAC99396.1| (AF077728) D-alanine:D-alanine ligase [Mycobacterium smegmatis] Length = 373 Score = 313 bits (803), Expect = 1e-84 Identities = 158/363 (43%), Positives = 223/363 (60%), Gaps = 16/363 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 + RV +V+GG+S+EH +S SA +I+ +D RF+VV +GI G W ++D L Sbjct: 10 RTRVAVVYGGRSSEHAISCVSAGSILRNLDPERFEVVAIGITPDGSWVLTDGRPETLAIT 69 Query: 63 D---PAHIALRPSATSLAQVPGKHEHQL-IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118 D PA + +L P + L + G+ L VDV+FP++HG GEDG++QG Sbjct: 70 DGKLPAVTEASGTELALPAAPNRSGQLLALGNGPGEILAAVDVVFPVLHGPYGEDGTIQG 129 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 +L +A +P+VGS VLASAA MDK+ TK+LL GL I + L E +L Sbjct: 130 LLELAGVPYVGSGVLASAAGMDKEYTKKLLAAEGLPIGDQVVLRPGVETLD--LEQRERL 187 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG--N 236 GLP+FVKPA GSS+GVS+VT+ ++ AV LA D KVIVE + GRE+EC VL + Sbjct: 188 GLPVFVKPARGGSSIGVSRVTAWDELPAAVALARRHDPKVIVEAAVIGRELECGVLEFPD 247 Query: 237 DNPQASTCGEIVL------TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 +AST GEI + FY + TKY+ ED A++ VPA + ++ D+IR +AV+A+ Sbjct: 248 GRLEASTVGEIRVAGVRGREDGFYDFATKYL-EDAAELDVPAKVDDDVADEIRQLAVRAF 306 Query: 291 QTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 +GC G+ARVD FLT + V INEINT+PGFT ISMYP++W A G+ Y L+ +++ A Sbjct: 307 TAIGCQGLARVDFFLTDDGPV-INEINTMPGFTTISMYPRMWAAGGIDYPTLLAAMVDTA 365 Query: 351 LER 353 + R Sbjct: 366 IAR 368 >gb|AAD19835.1| (AF060799) D-alanyl-D-alanine ligase [Amycolatopsis orientalis] Length = 348 Score = 311 bits (796), Expect = 1e-83 Identities = 124/357 (34%), Positives = 201/357 (55%), Gaps = 20/357 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +L++GI+FGG S EH +S++SA+ + +D +++ +GI + G W + D Sbjct: 1 MGRLKIGILFGGLSEEHPISIKSAREVQKHLDLEKYEPYYIGITQSGSWMLCDGPAEDWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGM 119 D P + H L+ G+ +DV+ P++HG GEDG++QG+ Sbjct: 61 NGDVRPA---------VLSPDRGVHGLLVLDEGKYETIALDVVLPVLHGKFGEDGAMQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L ++ +P+VG D+ +S C+DK +T ++R AG+ F +T N + L Sbjct: 112 LEISGIPYVGCDLPSSVMCIDKSLTYSVVRGAGIATPTFHIVTPDNDVDPDA------LN 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GVSKV+S+E+ A+ A ++D K+++E+ + G EI C++LG+ + Sbjct: 166 YPVFVKPARSGSSFGVSKVSSKEELPAALAEARQYDAKILIEEAVIGSEIGCSILGDGED 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 A + LT F+ + E G++ +VPA I D ++ A Y+ LGC Sbjct: 226 LFAGEVDRVALTHGFFKIHQEKSPETGSENSSFIVPADIPDASRDLVQETAKVIYRALGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 +G+ARVD+FL + VV+NE+NTLPG T+ S YP++ A+GL D+I RL++L L Sbjct: 286 SGLARVDLFLKEDGSVVLNEVNTLPGLTSYSRYPRMMNAAGLSLGDVIDRLVKLTLA 342 >sp|P29753|VANC_ENTGA VANCOMYCIN C-TYPE RESISTANCE PROTEIN VANC (VANC LIGASE) pir||JN0249 vancomycin resistance protein vanC - Enterococcus gallinarum gb|AAA24786.1| (AF162694) D-alanine-D-alanine ligase-related protein [Enterococcus gallinarum] Length = 343 Score = 309 bits (791), Expect = 4e-83 Identities = 120/355 (33%), Positives = 185/355 (51%), Gaps = 18/355 (5%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 ++ ++FGG S E+ VSL SA +++ AID +++V+ +GI W+ + + D Sbjct: 2 KKIAVLFGGNSPEYSVSLTSAASVIQAIDPLKYEVMTIGIAPTMDWYWYQGNLANVRNDT 61 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQN----GQPLPTVDVIFPIVHGTLGEDGSLQGM 119 K+ HQL + G+ DV+FP++HG GEDG +QG+ Sbjct: 62 WL-------------EDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGL 108 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L + NLP+VG V ASA CM+K + +L G+ AP + L+R + G Sbjct: 109 LELMNLPYVGCHVAASALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHG 168 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+F+KP GSS G++KVT + A+ AF + V++++ I G EI C +LGN+ Sbjct: 169 FPIFIKPNEAGSSKGITKVTDKTALQSALTTAFAYGSTVLIQKAIAGIEIGCGILGNEQL 228 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 C I L F+ ++ KY A + VPA + + +I+ A Y+ LG G+A Sbjct: 229 TIGACDAISLVDGFFDFEEKYQL-ISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLA 287 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 R+D F+T + + +NEINT+PGFT S YP + GL Y L+ +LI LA E Sbjct: 288 RIDFFVTNQGAIYLNEINTMPGFTGHSRYPAMMAEVGLSYEILVEQLIALAEEDK 342 >sp|Q47823|DDL_ENTGA D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAB17903.1| (U39789) D-alanine:D-alanine ligase [Enterococcus gallinarum] Length = 316 Score = 308 bits (789), Expect = 6e-83 Identities = 116/322 (36%), Positives = 187/322 (58%), Gaps = 17/322 (5%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ +++GG+SAEH+VSL SA ++V+A+ + + V L+ I + GQW + + Sbjct: 1 MKIILLYGGRSAEHDVSLLSAFSVVNAVYYNYYQVQLVMITRDGQWLKGSLLTEAPTSKE 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 ++ +Q Q G+ ++FP++HG GEDG++QG L Sbjct: 61 VLNLTD-------------SAYQGTPIQPGEIKEEDAIVFPLLHGPNGEDGTIQGFLETI 107 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRHNISFAEVESKLGL 180 +P+VG+ VL SA MDK +TK +L+ AG+ P++ + + F + E L Sbjct: 108 GMPYVGAGVLTSACGMDKIMTKYILQAAGIPQVPYVPVLKNYWKENPKKVFEQCEGSLLY 167 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+F+KPAN GSSVG++K + E+ A+ A+ +D + IVEQGI+ REIE AVLGN++ + Sbjct: 168 PMFIKPANMGSSVGITKAENREELQNALQEAYRYDTRAIVEQGIEAREIEVAVLGNEDVR 227 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 + GEIV FY Y++KY+D ++ +PA I E K + A +AY LG +G++R Sbjct: 228 TTMPGEIVKDVAFYDYNSKYLDNK-IEMQIPAQIPEETQAKAQEFAKKAYTMLGGSGLSR 286 Query: 301 VDVFLTPENEVVINEINTLPGF 322 D FLT +NE+ +NE+NT+P Sbjct: 287 CDFFLTNKNELFLNELNTIPAL 308 >ref|NP_302152.1| (NC_002677) D-alanine-D-alanine ligase A [Mycobacterium leprae] emb|CAC30631.1| (AL583923) D-alanine-D-alanine ligase A [Mycobacterium leprae] Length = 384 Score = 307 bits (788), Expect = 8e-83 Identities = 150/367 (40%), Positives = 217/367 (58%), Gaps = 20/367 (5%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 ++RV +VFGG+S EH VS SA +I+ +D+ RFDVV +GI +G W ++D + L Sbjct: 17 RVRVAVVFGGRSNEHAVSCLSAGSILRNLDRQRFDVVAVGITPEGTWMLTDPNPDALAIA 76 Query: 63 D---PAHIALRPSATSLAQVPGKHEHQL-----IDAQNGQPLPTVDVIFPIVHGTLGEDG 114 + PA +L P + + G+ L +VDV+FP++HG GEDG Sbjct: 77 NRQLPAVSCESGIELTLPADPRRSGQLVSLSHGAGLGAGEVLTSVDVVFPVLHGPYGEDG 136 Query: 115 SLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 ++QG+L +A +P+VG+ VLASAA MDK+ TK+L GL ++ + L + Sbjct: 137 TIQGLLELARVPYVGAGVLASAAGMDKEFTKKLFAAEGLPLSAYTVLRPLRPT--LHRQE 194 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL 234 +L LP+FVKPA GSS+G+S+V+S Q A+ A D KVIVE + GRE+EC VL Sbjct: 195 CERLSLPVFVKPARGGSSIGISRVSSWGQLPSAIAYARRHDPKVIVEAAVNGRELECGVL 254 Query: 235 G--NDNPQASTCGEIV------LTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIA 286 + AS GEI FY + TKY+D D A++ VPA + ++ D++R +A Sbjct: 255 EMPDGTVAASAVGEIRVAGVSGSEDSFYDFTTKYLD-DAAELDVPAKVDDDVADEVRQLA 313 Query: 287 VQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 +QA++ + C G+ARVD FLT + V INEINT+PGFT SMYPKLW S + Y L+ + Sbjct: 314 IQAFRAIDCQGLARVDFFLTDDGPV-INEINTMPGFTMTSMYPKLWAVSSVDYPTLLATM 372 Query: 347 IELALER 353 ++ AL R Sbjct: 373 VDTALAR 379 >ref|NP_440997.1| (NC_000911) D-alanine:D-alanine ligase-related protein [Synechocystis sp. PCC 6803] sp|P73632|DDL_SYNY3 D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||S77119 D-alanine--D-alanine ligase (EC 6.3.2.4) A - Synechocystis sp. (strain PCC 6803) dbj|BAA17677.1| (D90908) D-alanine:D-alanine ligase-related protein [Synechocystis sp. PCC 6803] Length = 354 Score = 307 bits (787), Expect = 1e-82 Identities = 144/363 (39%), Positives = 216/363 (58%), Gaps = 27/363 (7%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAI----DKSRFDVVLLGIDKQGQWHVSDASNYLL 59 +RVG++FGG S EHEVS++SA+ I A+ +++++ V I K G W D S +L Sbjct: 1 MRVGLLFGGCSGEHEVSIKSAQAIAKALASDDNQTKYQVSPFYIQKNGVWLGPDVSQQVL 60 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 + P + Q P ++V FPI+HG GEDG++QG+ Sbjct: 61 DQGVPWGDQPVTAGQR-WQFPP-------------EAARMEVWFPILHGPNGEDGTVQGL 106 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHN------ISFAE 173 + +P+VGS VL S MDK K + AGL ++ + R + + Sbjct: 107 FSLMQVPYVGSGVLGSCVGMDKLAMKMVFERAGLPQVNYMGVERGEIWSNPCVFPALCEK 166 Query: 174 VESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECA 232 +E+++G P FVKPAN GSSVG++KV + + A+D A +D ++IVE G+ RE+ECA Sbjct: 167 IEAQVGYPCFVKPANLGSSVGIAKVRNRSELEAALDNAASYDRRIIVEAGLTDIREVECA 226 Query: 233 VLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 VLGN+NPQAS GEI SDFY Y+TKY D +++ +PA + + ++I+ +A+QA++ Sbjct: 227 VLGNENPQASVVGEITYDSDFYDYETKYTDGR-SQMHIPANLPKAVVNQIQTMAIQAFKA 285 Query: 293 LGCAGMARVDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 + AG+ R+D F P ++VINEINTLPGFT SMYP+LW+ASG+ + L+ RL++LAL Sbjct: 286 VDAAGLGRLDFFYQPTTGQIVINEINTLPGFTAFSMYPELWRASGVEFPSLVDRLLQLAL 345 Query: 352 ERH 354 + H Sbjct: 346 DYH 348 >ref|NP_220281.1| (NC_000117) UDP-N-acetylmuramate-alanine ligase and D-Ala-D-Ala Ligase [Chlamydia trachomatis] sp|O84767|MUDD_CHLTR MURC/DDL BIFUNCTIONAL ENZYME [INCLUDES: UDP-N-ACETYLMURAMATE--ALANINE LIGASE (UDP-N-ACETYLMURAMOYL-L-ALANINE SYNTHETASE); D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE)] pir||A71475 probable muramate-Ala ligase and D-Ala-D-Ala ligase - Chlamydia trachomatis (serotype D, strain UW3/Cx) gb|AAC68357.1| (AE001348) UDP-N-acetylmuramate-alanine ligase and D-Ala-D-Ala Ligase [Chlamydia trachomatis] Length = 803 Score = 306 bits (785), Expect = 2e-82 Identities = 112/370 (30%), Positives = 179/370 (48%), Gaps = 30/370 (8%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +KL +GI+ GGKS EHE+S+ SAKNI + KS +DV I ++G W Sbjct: 446 QKLHLGIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITREGLW------------ 493 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 + S + + D + Q L VDV+ PI+HG GEDG++QG L Sbjct: 494 ----------ESVSSLETAEDSGKSVFDPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLE 543 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT---RANRHNISFAEVESKL 178 P+ G + SA M+K TKR + D G+ + P++ LT + A + Sbjct: 544 TIGKPYTGPAIAFSAIAMNKVFTKRFMSDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAF 603 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGND 237 P+FVK ++ GSS+GV +V + + A++ AF D+ V VE+ G +EIE +VLG+ Sbjct: 604 SFPIFVKSSHLGSSIGVFEVHNVIELRDAINEAFMRDNDVFVEENRLGCKEIEVSVLGDG 663 Query: 238 NP--QASTCGEIVLTSDFYAYDTKY--IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 + + E + F Y KY + A++V ++ EI ++I A + Y+ L Sbjct: 664 SGAFVVAGLHERRGSGGFIDYQEKYGLSGKSSAQIVFDTDLSKEIQEQILEAADKIYRLL 723 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G R+D F+ E ++E+N +PG T S + + G Y ++ +L+ L+R Sbjct: 724 LGKGSCRIDFFVDEEGNFWLSEMNPIPGMTETSPFLTSFIRKGWSYEQIVHQLVIDGLQR 783 Query: 354 HAADNALKTT 363 L +T Sbjct: 784 FNQRQRLIST 793 >ref|NP_337574.1| (NC_002755) D-alanine--D-alanine ligase [Mycobacterium tuberculosis CDC1551] gb|AAK47388.1| (AE007126) D-alanine--D-alanine ligase [Mycobacterium tuberculosis CDC1551] Length = 373 Score = 304 bits (780), Expect = 6e-82 Identities = 153/363 (42%), Positives = 222/363 (61%), Gaps = 16/363 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 ++RV +VFGG+S EH +S SA +I+ +D RFDV+ +GI G W ++DA+ L Sbjct: 10 RVRVAVVFGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTIT 69 Query: 63 DPAHIALRPSATSLAQVPGKHEHQL----IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118 + ++ + + +P + G+ L +VDV+FP++HG GEDG++QG Sbjct: 70 NRELPQVKSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQG 129 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 +L +A +P+VG+ VLASA MDK+ TK+LL GL + + L + + +L Sbjct: 130 LLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRP--PRSTLHRQECERL 187 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG--N 236 GLP+FVKPA GSS+GVS+V+S +Q AV A D KVIVE I GRE+EC VL + Sbjct: 188 GLPVFVKPARGGSSIGVSRVSSWDQLPAAVARARRHDPKVIVEAAISGRELECGVLEMPD 247 Query: 237 DNPQASTCGEIVL------TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 +AST GEI + FY + TKY+D D A++ VPA + ++ + IR +A++A+ Sbjct: 248 GTLEASTLGEIRVAGVRGREDSFYDFATKYLD-DAAELDVPAKVDDQVAEAIRQLAIRAF 306 Query: 291 QTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + C G+ARVD FLT + V INEINT+PGFT ISMYP++W ASG+ Y L+ +IE A Sbjct: 307 AAIDCRGLARVDFFLTDDGPV-INEINTMPGFTTISMYPRMWAASGVDYPTLLATMIETA 365 Query: 351 LER 353 L R Sbjct: 366 LAR 368 >ref|NP_217497.1| (NC_000962) ddlA [Mycobacterium tuberculosis H37Rv] sp|P95114|DDL_MYCTU D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||B70673 probable ddlA - Mycobacterium tuberculosis (strain H37RV) emb|CAB05431.1| (Z83018) ddlA [Mycobacterium tuberculosis H37Rv] Length = 373 Score = 303 bits (776), Expect = 2e-81 Identities = 152/363 (41%), Positives = 221/363 (60%), Gaps = 16/363 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 ++RV +VFGG+S EH +S SA +I+ +D RFDV+ +GI G W ++DA+ L Sbjct: 10 RVRVAVVFGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTIT 69 Query: 63 DPAHIALRPSATSLAQVPGKHEHQL----IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118 + ++ + + +P + G+ L +VDV+FP++HG GEDG++QG Sbjct: 70 NRELPQVKSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQG 129 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 +L +A +P+VG+ VLASA MDK+ TK+LL GL + + L + + +L Sbjct: 130 LLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRP--PRSTLHRQECERL 187 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG--N 236 GLP+FVKPA GSS+GVS+V+S +Q AV A D KVIVE I GRE+EC VL + Sbjct: 188 GLPVFVKPARGGSSIGVSRVSSWDQLPAAVARARRHDPKVIVEAAISGRELECGVLEMPD 247 Query: 237 DNPQASTCGEIVL------TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 +AST GEI + FY + TKY+D D A++ VPA + ++ + IR +A++A+ Sbjct: 248 GTLEASTLGEIRVAGVRGREDSFYDFATKYLD-DAAELDVPAKVDDQVAEAIRQLAIRAF 306 Query: 291 QTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + C G+ARVD FLT + V INEINT+PGFT ISMYP++W ASG+ Y L+ +IE Sbjct: 307 AAIDCRGLARVDFFLTDDGPV-INEINTMPGFTTISMYPRMWAASGVDYPTLLATMIETT 365 Query: 351 LER 353 L R Sbjct: 366 LAR 368 >ref|NP_219107.1| (NC_000919) D-alanine--D-alanine ligase (ddlA) [Treponema pallidum] sp|O83676|DDL_TREPA D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||A71296 D-alanine--D-alanine ligase (EC 6.3.2.4) A ddlA - syphilis spirochete gb|AAC26568.1| (AE001241) D-alanine--D-alanine ligase (ddlA) [Treponema pallidum] Length = 396 Score = 303 bits (776), Expect = 2e-81 Identities = 128/346 (36%), Positives = 203/346 (57%), Gaps = 5/346 (1%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 V +++GG+SAEH+VS++SA+ + + + V+L+GI ++G W+ A Sbjct: 3 HVTLLYGGRSAEHDVSVRSARFVARTL-CLQHTVMLIGITRRGVWYAQPACALEQLCTGT 61 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 ++++ + G P T DV+FP++HG+ GEDG++QG+L + Sbjct: 62 VALSIQEDEKRRVCLVPGGGTAGAFVIAGMPCVT-DVVFPVLHGSYGEDGTVQGLLEMLQ 120 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN---RHNISFAEVESKLGLP 181 +P+VG V ASA MDK K L + AGL + PF+ + A++E++LG P Sbjct: 121 VPYVGCGVCASALAMDKVKAKMLWQAAGLPVLPFVFFRKDAWRMHMQEFVAQLETRLGYP 180 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 LFVKPA GSSVG S V + A++ AF++D V+VE+ ++ REIECA+ GN Sbjct: 181 LFVKPAQAGSSVGASAVQTRAPLIPAIEAAFQWDEVVLVERYVRAREIECALSGNGPYTV 240 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 GE++ FY Y+ KY D A+V+V A + ++I +A++AY+ LG G+ARV Sbjct: 241 HGAGEVIAQGAFYDYEEKYADASVARVLVTAPLETAQYEQITTLALRAYEALGLTGLARV 300 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 D FL EV +NE+NT+PGFT+IS++P++ QA+G+ DL+ +L+ Sbjct: 301 DFFLLETGEVYVNEVNTMPGFTSISLFPQICQAAGVAPQDLMAQLL 346 >gb|AAL27442.1|AF430807_7 (AF430807) VanE [Enterococcus faecalis] Length = 352 Score = 301 bits (770), Expect = 1e-80 Identities = 110/354 (31%), Positives = 198/354 (55%), Gaps = 8/354 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 V I+FGG S+E+EVSL+SA I+ ++ ++V+ +GI ++G W++ + + + D Sbjct: 2 KTVAIIFGGVSSEYEVSLKSAVAIIKNMESIDYNVMKIGITEEGHWYLFEGTTDKIKKDR 61 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 L S + K +N + + D++FP++HG GE+G++QG+ + Sbjct: 62 WF---LDESCEEIVVDFAKKS---FVLKNSKKIIKPDILFPVLHGGYGENGAMQGVFELL 115 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 ++P+VG + A+A M+K + + G+ P + + + G PL+ Sbjct: 116 DIPYVGCGIGAAAISMNKIMLHQFAEAIGVKSTPSMIIEKGQDLQ-KVDAFAKIHGFPLY 174 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 +KP GSS G+SKV + A+D A ++D ++++++ +KG EI C +LGN+ Sbjct: 175 IKPNEAGSSKGISKVERKSDLYKAIDEASKYDSRILIQKEVKGVEIGCGILGNEQLVVGE 234 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 C +I L F+ Y+ KY + A++++PA ++ + + I+ A + Y+ LGC G+AR+D Sbjct: 235 CDQISLVDGFFDYEEKY-NLVTAEILLPAKLSIDKKEDIQMKAKKLYRLLGCKGLARIDF 293 Query: 304 FLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 FLT + E+++NEINT+PGFT S +P + G+ Y ++I L+ LA+E H Sbjct: 294 FLTDDGEILLNEINTMPGFTEHSRFPMMMNEIGMDYKEIIENLLVLAVENHEKK 347 >ref|NP_296522.1| (NC_002620) UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase [Chlamydia muridarum] pir||B81737 UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase TC0143 [imported] - Chlamydia muridarum (strain Nigg) gb|AAF39021.1| (AE002281) UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase [Chlamydia muridarum] Length = 833 Score = 299 bits (767), Expect = 2e-80 Identities = 102/370 (27%), Positives = 175/370 (46%), Gaps = 30/370 (8%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +KL +G++ GG+S EH++S+ SA+NI + S ++V I ++G W + Sbjct: 476 KKLSLGLICGGRSCEHDISILSAQNIAKYLSHSFYEVQYFLITREGLWKTGSSL------ 529 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 ++ + + D + L VDVI PI+HG GEDG++QG L Sbjct: 530 ----------------ELSEETGKTIFDPEIAGKLSKVDVILPILHGPYGEDGAMQGFLE 573 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT---RANRHNISFAEVESKL 178 P+ G ++ +A M+K +TKR + D G+ + P++ LT A++++ Sbjct: 574 TIGKPYTGPSLVFAAIGMNKVLTKRFMSDLGIPVVPYLPLTLKGWKQDQEKCLAQIKAAF 633 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGND 237 P+FVK + GSS+GV +V + A++ AF D V +E+ G REIE + LG+ Sbjct: 634 SFPMFVKSVHLGSSIGVFEVHDTNELRDAINEAFVRDDDVFIEESRLGCREIEVSFLGDG 693 Query: 238 NPQASTCG--EIVLTSDFYAYDTKYIDEDG--AKVVVPAAIAPEINDKIRAIAVQAYQTL 293 + G E F Y KY A++V ++ E +++ +A + Y+ L Sbjct: 694 SGVFFVAGMHERRGRGGFIDYQEKYGLSGRASAQIVFDVDLSKETREQLLGVAEKIYRLL 753 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G R+D F+ E ++EIN +PG T S + + G ++ +L+ L+R Sbjct: 754 QGKGSCRIDFFVDNEGSFWLSEINPIPGMTTASPFLAAFVRKGWNREQIVHQLVIDGLQR 813 Query: 354 HAADNALKTT 363 L +T Sbjct: 814 FDQRQRLIST 823 >sp|Q9PLG1|MUDD_CHLMU MURC/DDL BIFUNCTIONAL ENZYME [INCLUDES: UDP-N-ACETYLMURAMATE--ALANINE LIGASE (UDP-N-ACETYLMURAMOYL-L-ALANINE SYNTHETASE); D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE)] Length = 802 Score = 298 bits (764), Expect = 5e-80 Identities = 102/370 (27%), Positives = 175/370 (46%), Gaps = 30/370 (8%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +KL +G++ GG+S EH++S+ SA+NI + S ++V I ++G W + Sbjct: 445 KKLSLGLICGGRSCEHDISILSAQNIAKYLSHSFYEVQYFLITREGLWKTGSSL------ 498 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 ++ + + D + L VDVI PI+HG GEDG++QG L Sbjct: 499 ----------------ELSEETGKTIFDPEIAGKLSKVDVILPILHGPYGEDGAMQGFLE 542 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT---RANRHNISFAEVESKL 178 P+ G ++ +A M+K +TKR + D G+ + P++ LT A++++ Sbjct: 543 TIGKPYTGPSLVFAAIGMNKVLTKRFMSDLGIPVVPYLPLTLKGWKQDQEKCLAQIKAAF 602 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGND 237 P+FVK + GSS+GV +V + A++ AF D V +E+ G REIE + LG+ Sbjct: 603 SFPMFVKSVHLGSSIGVFEVHDTNELRDAINEAFVRDDDVFIEESRLGCREIEVSFLGDG 662 Query: 238 NPQASTCG--EIVLTSDFYAYDTKYIDEDG--AKVVVPAAIAPEINDKIRAIAVQAYQTL 293 + G E F Y KY A++V ++ E +++ +A + Y+ L Sbjct: 663 SGVFFVAGMHERRGRGGFIDYQEKYGLSGRASAQIVFDVDLSKETREQLLGVAEKIYRLL 722 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G R+D F+ E ++EIN +PG T S + + G ++ +L+ L+R Sbjct: 723 QGKGSCRIDFFVDNEGSFWLSEINPIPGMTTASPFLAAFVRKGWNREQIVHQLVIDGLQR 782 Query: 354 HAADNALKTT 363 L +T Sbjct: 783 FDQRQRLIST 792 >gb|AAA60990.1| (L29638) ligase [Enterococcus casseliflavus] Length = 350 Score = 295 bits (756), Expect = 4e-79 Identities = 123/352 (34%), Positives = 182/352 (50%), Gaps = 9/352 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKS--RFDVVLLGIDKQ-GQWHVSDASNYLLN 60 ++ I+FGG S E+ VSL SA + ++A+ S +D+ L+GI W++ + Sbjct: 2 KKIAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIR 61 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 D ++ E Q DV+FPI+HG GEDGS+QG+ Sbjct: 62 QDTWL-----LDTKHKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLF 116 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + LP+VG V SA CM+K + + G+ AP I LT G Sbjct: 117 ELMKLPYVGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGF 176 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+F KP GSS G++KVT E+ A A+ AF + V++++ I G EI C +LGND+ Sbjct: 177 PVFFKPNEAGSSKGITKVTCVEEIASALKEAFTYCSAVLLQKNIAGVEIGCGILGNDSLT 236 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 C I L F+ ++ KY AK+ VPA + I K++ A Y++LG G+AR Sbjct: 237 VGACDAISLVDGFFDFEEKYQL-ISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLAR 295 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 +D F+T E+ +NEINT+PGFT+ S YP + A GL Y +L+ +L+ LA E Sbjct: 296 IDFFVTERGELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLLVLAKE 347 >sp|Q9ZBR9|DDL_STRCO D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||T35644 D-alanine-D-alanine ligase - Streptomyces coelicolor emb|CAA22403.1| (AL034447) D-alanine-D-alanine ligase [Streptomyces coelicolor A3(2)] Length = 389 Score = 295 bits (755), Expect = 5e-79 Identities = 135/367 (36%), Positives = 212/367 (56%), Gaps = 18/367 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K RV +VFGG+S+EH +S+ +A ++ AID++R+DV+ +GI + G+W ++ + Sbjct: 20 KPRVAVVFGGRSSEHGISVVTAGAVLAAIDRTRYDVLPIGITRDGRWALTADEPERMAIT 79 Query: 63 DPAHIALRPSATS----LAQVPGKHEHQLIDAQNG---QPLPTVDVIFPIVHGTLGEDGS 115 + + A S + +++ ++ G + L VDV+FP++HG GEDG+ Sbjct: 80 ERRTPDVEELAESTEGGVLLPVDPANREVVYSEPGSVPKALGEVDVVFPVLHGPYGEDGT 139 Query: 116 LQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNI------ 169 LQG+L ++ +P+VG+ VLASA DK+ K + GL + P+ + Sbjct: 140 LQGLLELSGVPYVGAGVLASAVGQDKEYMKAVFTSYGLKVGPYAVIRPREWEQDRSGARK 199 Query: 170 SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 + + G PLFVKPA GSS+G++KV A++ A D K++VE ++GREI Sbjct: 200 KIVDFAGEHGWPLFVKPARAGSSIGITKVDDLAGLDEAIEEARRHDPKILVEAALRGREI 259 Query: 230 ECAVLGNDNP-QASTCGEIVLT--SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIA 286 EC VL ++ +AS EI +Y ++ KYID +VPA + E +++ +A Sbjct: 260 ECGVLEFEDGPRASVPAEIPPPSEHAYYDFEAKYIDSTPG--IVPAPLTAEETAEVQRLA 317 Query: 287 VQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 V A+ C G+ R D FLT ++E VINEINT+PGFT ISMYP++WQASG+ Y +L+ RL Sbjct: 318 VAAFDAASCEGLVRADFFLTEDDEFVINEINTMPGFTPISMYPQMWQASGVSYPELVDRL 377 Query: 347 IELALER 353 ++ AL R Sbjct: 378 VQAALRR 384 >pdb|1EHI|A Chain A, D-Alanine:d-Lactate Ligase (Lmddl2) Of Vancomycin-Resistant Leuconostoc Mesenteroides pdb|1EHI|B Chain B, D-Alanine:d-Lactate Ligase (Lmddl2) Of Vancomycin-Resistant Leuconostoc Mesenteroides Length = 377 Score = 291 bits (746), Expect = 6e-78 Identities = 129/369 (34%), Positives = 213/369 (56%), Gaps = 13/369 (3%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSR-FDVVLLGIDKQGQWHVSDASNYLL 59 M K RV ++FGG S+EH+VS +SA+N +AI+ + +++++ I + G + +++S +L Sbjct: 1 MTKKRVALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKIL 60 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 +D I T A P H L A + D+ FP+VHG LGEDG+LQG+ Sbjct: 61 ALEDEQPIVDAFMKTVDASDPLARIHALKSAGD------FDIFFPVVHGNLGEDGTLQGL 114 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ + P+VG+ + A DK +TK LL G+ +I + + +N S+ ++ ++LG Sbjct: 115 FKLLDKPYVGAPLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELG 174 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGNDN 238 +FVK ANQGSSVG+S+VT+ E+Y A+ +F++D+KV++E+ + G RE+E V+GND Sbjct: 175 NIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVNGARELEVGVIGNDQ 234 Query: 239 PQASTCGEIVLT-----SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 P S G + +Y Y+ K++D +PA ++PE+ +++ +A+ AY+ L Sbjct: 235 PLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQLSPEVTKEVKQMALDAYKVL 294 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G AR+D L N + E NTLPGFTN+S++ +LW S + L+ LI+ E Sbjct: 295 NLRGEARMDFLLDENNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLIDYGFED 354 Query: 354 HAADNALKT 362 A + L Sbjct: 355 FAQNKKLSY 363 >gb|AAB18338.1| (U75444) D-Ala-D-Ala ligase2 [Leuconostoc mesenteroides] Length = 377 Score = 290 bits (743), Expect = 1e-77 Identities = 129/369 (34%), Positives = 213/369 (56%), Gaps = 13/369 (3%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSR-FDVVLLGIDKQGQWHVSDASNYLL 59 M K RV ++FGG S+EH+VS +SA+N +AI+ + +++++ I + G + +++S +L Sbjct: 1 MTKKRVALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKIL 60 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 +D I T A P H L A + D+ FP+VHG LGEDG+LQG+ Sbjct: 61 ALEDEQPIVDAFMKTVDASDPLARIHALKSAGD------FDIFFPVVHGNLGEDGTLQGL 114 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ + P+VG+ + A DK +TK LL G+ +I + + +N S+ ++ ++LG Sbjct: 115 FKLLDKPYVGAPLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELG 174 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGNDN 238 +FVK ANQGSSVG+S+VT+ E+Y A+ +F++D+KV++E+ + G RE+E V+GND Sbjct: 175 NIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVNGARELEVGVIGNDQ 234 Query: 239 PQASTCGEIVLT-----SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 P S G + +Y Y+ K++D +PA ++PE+ +++ +A+ AY+ L Sbjct: 235 PLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFEIPAQLSPEVTKEVKQMALDAYKVL 294 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G AR+D L N + E NTLPGFTN+S++ +LW S + L+ LI+ E Sbjct: 295 NLRGEARMDFLLDENNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLIDYGFED 354 Query: 354 HAADNALKT 362 A + L Sbjct: 355 FAQNKKLSY 363 >sp|Q48745|DDL_LEUME D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAA87679.1| (U08909) putative D-alanine:D-alanine ligase [Leuconostoc mesenteroides] Length = 377 Score = 290 bits (743), Expect = 1e-77 Identities = 128/369 (34%), Positives = 212/369 (56%), Gaps = 13/369 (3%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDK-SRFDVVLLGIDKQGQWHVSDASNYLL 59 M K RV ++FGG S+EH+VS +SA+N +AI+ ++++++ I + G + +++S +L Sbjct: 1 MTKKRVALIFGGNSSEHDVSKRSAQNFYNAIEATDKYEIIVFAIAQNGFFLDTESSKKIL 60 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 +D I T P H L A + D+ FP+VHG LGEDG+LQG+ Sbjct: 61 ALEDEQPIVDAFMKTVDTSDPLARIHALKSAGD------FDIFFPVVHGNLGEDGTLQGL 114 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ + P+VG+ + A DK +TK LL G+ +I + + +N S+ ++ ++LG Sbjct: 115 FKLLDKPYVGAPLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELG 174 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGNDN 238 +FVK ANQGSSVG+S+VT+ E+Y A+ +F++D+KV++E+ + G RE+E V+GND Sbjct: 175 NIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVNGARELEVGVIGNDQ 234 Query: 239 PQASTCGEIVLT-----SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 P S G + +Y Y+ K++D +PA ++PE+ +++ +A+ AY+ L Sbjct: 235 PLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFEIPAQLSPEVTKEVKQMALDAYKVL 294 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G AR+D L N + E NTLPGFTN+S++ +LW S + L+ LI+ E Sbjct: 295 NLRGEARMDFLLDENNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLIDYGFED 354 Query: 354 HAADNALKT 362 A + L Sbjct: 355 FAQNKKLSY 363 >ref|NP_539644.1| (NC_003317) D-ALANINE--D-ALANINE LIGASE A [Brucella melitensis] gb|AAL51908.1| (AE009514) D-ALANINE--D-ALANINE LIGASE A [Brucella melitensis] Length = 366 Score = 289 bits (740), Expect = 3e-77 Identities = 150/357 (42%), Positives = 227/357 (63%), Gaps = 16/357 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K+R+ ++FGG+SAEH+VS+ SA N+++A+D ++++ V + + + GQW +S N L Sbjct: 18 KMRIVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKP 77 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLP--TVDVIFPIVHGTLGEDGSLQGML 120 S L VPG ++ G P +D+IFP++HG GEDG++QG+ Sbjct: 78 --------SSGAELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLA 129 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 +VA +P G + SA +DKD+ KRL+ +AGL+ A +T+TR +F+ +E LGL Sbjct: 130 QVARVPLAGCGIPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVP--AFSALEQALGL 187 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP- 239 P+F+KPA QGSSVGV KV +E Y A+ F +D K++ E+ I+ RE+EC VL ++ Sbjct: 188 PIFIKPARQGSSVGVHKVVTEADYQAAMSDGFIYDDKLLAEEFIQAREVECGVLEDEGGA 247 Query: 240 -QASTCGEIV--LTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 S GEIV + FY+YD KYID DG ++ VPA + ++ ++IRAIA +A++ LGC Sbjct: 248 LFVSRAGEIVPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCD 307 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 MARVD F+T + +V+NEINT+PGFT++SMY K+ SG+ Y ++I RL+ L R Sbjct: 308 SMARVDFFVTADRRIVLNEINTIPGFTDMSMYFKVMAVSGVSYPEIINRLVAHGLAR 364 >ref|NP_225100.1| (NC_000922) Muramate-Ala Ligase & D-Ala-D-Ala Ligase [Chlamydophila pneumoniae CWL029] ref|NP_300962.1| (NC_002491) muramate-Ala ligase/D-Ala-D-Ala ligase [Chlamydophila pneumoniae J138] ref|NP_445498.1| (NC_002179) UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase [Chlamydophila pneumoniae AR39] sp|Q9Z701|MUDD_CHLPN MURC/DDL BIFUNCTIONAL ENZYME [INCLUDES: UDP-N-ACETYLMURAMATE--ALANINE LIGASE (UDP-N-ACETYLMURAMOYL-L-ALANINE SYNTHETASE); D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE)] pir||D72022 UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase CP0961 [imported] - Chlamydophila pneumoniae (strains CWL029 and AR39) gb|AAD19043.1| (AE001670) Muramate-Ala Ligase & D-Ala-D-Ala Ligase [Chlamydophila pneumoniae CWL029] gb|AAF38741.1| (AE002254) UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase [Chlamydophila pneumoniae AR39] dbj|BAA99113.1| (AP002548) muramate-Ala ligase/D-Ala-D-Ala ligase [Chlamydophila pneumoniae J138] Length = 809 Score = 285 bits (729), Expect = 6e-76 Identities = 100/368 (27%), Positives = 168/368 (45%), Gaps = 28/368 (7%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +KL +G+V GGKS EH++SL SA+++ I +DV I++QG W +L+ Sbjct: 450 KKLSIGLVCGGKSCEHDISLLSAQHVSKYISPEFYDVSYFIINRQGLWRTGKDFPHLIEE 509 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 + ++ L VD +FP++HG GEDG++QG Sbjct: 510 T--------------------QGDSPLSSEIASALAKVDCLFPVLHGPFGEDGTIQGFFE 549 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT---RANRHNISFAEVESKL 178 + P+ G + +A MDK +TKR+ G+ + P+ L + + Sbjct: 550 ILGKPYAGPSLSLAATAMDKLLTKRIASAVGVPVVPYQPLNLCFWKRNPELCIQNLIETF 609 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQ-GIKGREIECAVLGND 237 P+ VK A+ GSS+G+ V +E+ + AF +D V VE+ + REIE + +G+ Sbjct: 610 SFPMIVKTAHLGSSIGIFLVRDKEELQEKISEAFLYDTDVFVEESRLGSREIEVSCIGHS 669 Query: 238 NPQASTCG--EIVLTSDFYAYDTKYI--DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 + G E S F Y KY D AK+ ++ E D +R +A + Y+ + Sbjct: 670 SSWYCMAGPNERCGASGFIDYQEKYGFDGIDCAKISFDLQLSQESLDCVRELAERVYRAM 729 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G AR+D FL E ++E+N +PG T S + + + +G ++ I AL + Sbjct: 730 QGKGSARIDFFLDEEGNYWLSEVNPIPGMTAASPFLQAFVHAGWTQEQIVDHFIIDALHK 789 Query: 354 HAADNALK 361 ++ Sbjct: 790 FDKQQTIE 797 >ref|NP_439298.1| (NC_000907) D-alanine--D-alanine ligase (ddlB) [Haemophilus influenzae Rd] sp|P44405|DDL_HAEIN D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||F64185 D-alanine--D-alanine ligase (EC 6.3.2.4) B - Haemophilus influenzae (strain Rd KW20) gb|AAC22795.1| (U32794) D-alanine--D-alanine ligase (ddlB) [Haemophilus influenzae Rd] Length = 306 Score = 274 bits (700), Expect = 1e-72 Identities = 107/351 (30%), Positives = 174/351 (49%), Gaps = 47/351 (13%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 +++ ++ ++ GG SAE EVSL S K +++A+ K ++ + Sbjct: 3 LKQEKIAVLLGGTSAEREVSLNSGKAVLEALLKQGYNAHPI------------------- 43 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 E+ + + + F I+HG GEDG++QG+L Sbjct: 44 --------------------DPKEYNVANL----KKDGFNRAFNILHGRGGEDGTMQGLL 79 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 LP+ G V+ASA MDK TK L + GL +A +TR + V +KLGL Sbjct: 80 EQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFSELDPQAVVAKLGL 139 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 PL VKP+ +GSSVG++KV + E+ AV+ A +FD+ +++E+ + G E+ VL N Sbjct: 140 PLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKFDNTILIEEWLAGDELTVPVLDNQ--- 196 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 IV +FY Y+ KYI D + PA + PE + + +AY +GC G +R Sbjct: 197 VLPAIRIVPEGEFYDYEAKYI-SDNTQYFCPAGLTPEREQALSTLVKRAYDAVGCRGWSR 255 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 +DV + + E+NT PG T+ S++PK G+ + L+ +++EL+L Sbjct: 256 IDVMCDAKGNFRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILELSL 306 >emb|CAC84690.1| (AJ306727) D-Ala:D-Lac ligase [Enterococcus faecium] Length = 289 Score = 271 bits (694), Expect = 6e-72 Identities = 101/305 (33%), Positives = 164/305 (53%), Gaps = 21/305 (6%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I ID +FD +GI K G W + Sbjct: 1 MNRIKVAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGM 119 AD + P + H L+ + + +DV FP++HG GEDG++QG+ Sbjct: 61 AD----------SLPAILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGL 110 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 111 FVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPE------AGALT 164 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GV+KV E+ A++ A ++D K+++EQ I G E+ CAV+GN+ + Sbjct: 165 YPVFVKPARSGSSFGVTKVNGTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDD 224 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L+ + + E G++ + VPA I E +++ A + Y+ LGC Sbjct: 225 LIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERKRVQETAKKVYRVLGC 284 Query: 296 AGMAR 300 G+AR Sbjct: 285 RGLAR 289 >emb|CAC84688.1| (AJ306726) D-Ala:D-Lac ligase [Enterococcus faecium] Length = 289 Score = 268 bits (685), Expect = 8e-71 Identities = 100/305 (32%), Positives = 164/305 (52%), Gaps = 21/305 (6%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I ID +FD +GI K G W + Sbjct: 1 MNRIKVAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGM 119 AD + P + H L+ + + +DV FP++HG GEDG++QG+ Sbjct: 61 AD----------SLPAILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGL 110 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +P+VG D+ +SAAC+DK + L ++AG+ + F + + ++ L Sbjct: 111 FVLSGIPYVGCDIQSSAACVDKSLAYILTKNAGIAVPEFQMIDKGDKPE------AGALT 164 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GV+KV E+ A++ A ++D K+++EQ I G E+ CAV+GN+ + Sbjct: 165 YPVFVKPARSGSSFGVTKVNGTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDD 224 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L+ + + E G++ + VPA I E +++ A + Y+ LGC Sbjct: 225 LIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERKRVQETAKKVYRVLGC 284 Query: 296 AGMAR 300 G+AR Sbjct: 285 RGLAR 289 >ref|NP_245081.1| (NC_002663) DdlB [Pasteurella multocida] sp|P57819|DDL_PASMU D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAK02228.1| (AE006049) DdlB [Pasteurella multocida] Length = 309 Score = 267 bits (682), Expect = 1e-70 Identities = 109/352 (30%), Positives = 177/352 (49%), Gaps = 47/352 (13%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 +++ ++ ++ GG SAE EVSL S + +++A+ + FD + Sbjct: 5 LKQEKIAVLLGGTSAEREVSLDSGQAVLNALLSAGFDAHPI------------------- 45 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 P +A + D +F I+HG GEDG++QG+L Sbjct: 46 ---------DPKTFPVATLKE---------------QGFDRVFNILHGRGGEDGTMQGLL 81 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 +P+ G V+ SA MDK TK L + GL +A +T+AN ++ + V KLGL Sbjct: 82 EQIGIPYTGCGVMTSALTMDKMRTKMLWKAFGLPVAEMEIVTKANVGELNPSAVVEKLGL 141 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+ VKP+ +GSSVG++KV E AVD A ++D V++E+ + G E VL N+ Sbjct: 142 PVMVKPSLEGSSVGLTKVKRVEDLKSAVDFALKYDDTVLIEEWLSGAEFTVPVLDNE--- 198 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 IV +FY Y+ KYI D + P+ ++ E D+++ + QAY +GC G +R Sbjct: 199 VLPSIRIVPEGEFYDYEAKYI-SDNTQYFCPSGLSAEREDELKQLVKQAYDVVGCRGWSR 257 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 +DV L + + E+NT PG T+ S++PK G + L+ +++EL+ E Sbjct: 258 IDVMLDGNDAFRLVEVNTNPGMTSHSLFPKSAATVGYSFEQLVVKILELSAE 309 >ref|NP_212334.1| (NC_001318) D-alanine--D-alanine ligase (ddlA) [Borrelia burgdorferi] sp|O51218|DDL_BORBU D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||H70124 D-alanine--D-alanine ligase (ddlA) homolog - Lyme disease spirochete gb|AAC66589.1| (AE001130) D-alanine--D-alanine ligase (ddlA) [Borrelia burgdorferi] Length = 356 Score = 264 bits (676), Expect = 8e-70 Identities = 115/357 (32%), Positives = 191/357 (53%), Gaps = 21/357 (5%) Query: 7 GIVFGGKSAEHEVSLQSAKNIVDA-IDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNADDP 64 ++FGG S EHE+S +SA +I A +D +++++ + IDK G W++ D+ + + Sbjct: 1 MLIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPINT 60 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 + + +DV+FP+VHG GEDG++QG+L+V + Sbjct: 61 DVLPIVSLLPGFGIFSNNKN------------LEIDVVFPVVHGRTGEDGAIQGVLKVMD 108 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN---RHNISFAEVESKLGLP 181 +P VG+ ++ SA +K K LL+ + + PFI + + V+ LG P Sbjct: 109 IPCVGAGIIGSAISSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEVLGYP 168 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 + VKPA GSS+G++ SE Q + A ++D +++E+ I+ REIEC+++GN+ + Sbjct: 169 VIVKPAVLGSSIGINVAYSENQIESFIKEALKYDLTIVIEKFIEAREIECSIIGNEKMKI 228 Query: 242 STCGEIVLTSD-FYAYDTKY--IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 + GE+V+ FY YD KY I + +PA + I+ A Y+ L GM Sbjct: 229 FSPGEVVVQDFIFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLTYKNLELRGM 288 Query: 299 ARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 ARVD F+ + + +NEINT+PGFT+ISM+ K+ GL + DL+ LI+ A + + Sbjct: 289 ARVDFFVEKKSGTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYAFQSY 345 >ref|NP_252890.1| (NC_002516) D-alanine-D-alanine ligase A [Pseudomonas aeruginosa] pir||E83121 D-alanine-D-alanine ligase A PA4201 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG07588.1|AE004836_7 (AE004836) D-alanine-D-alanine ligase A [Pseudomonas aeruginosa] Length = 346 Score = 264 bits (675), Expect = 1e-69 Identities = 113/356 (31%), Positives = 180/356 (49%), Gaps = 20/356 (5%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +KL+V ++FGG S E +VS+ S ++ A+ + V+ + G + Sbjct: 4 DKLKVAVLFGGSSEERDVSIASGAQVIQALRSAGHQVLAVD-TASGLL----GAEEERRL 58 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 + P + SLA + + L + L VDV F +HG GEDG+LQ +L Sbjct: 59 LASKVKEVPPDSDSLAIIRSGKQSLL----SAGELAGVDVFFLALHGGTGEDGTLQALLD 114 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 + GS LASA MDKDV KRL AG+ A ++ + EV +LG P Sbjct: 115 AGGFAYTGSGHLASAMAMDKDVAKRLFLAAGVETASWLMAPASEE------EVREQLGFP 168 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 L VKP +QGS+VG+S V S+ + A++LA + +V++E+ + GRE+ VL + A Sbjct: 169 LVVKPNSQGSTVGLSIVHSQAELQPAIELAGRYGDEVMLERFVAGREVTVGVLDDQ---A 225 Query: 242 STCGEIVLTSD-FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 GEI+L + Y+ KY + V PA + P I + + +A++ ++ L +G +R Sbjct: 226 LPVGEILLGGQEVFDYEHKYQAGAVRE-VFPADLPPAIAAEAQRLALKVHRALKLSGYSR 284 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 D L + + E+NTLPG T S+ P+ A+G+G+ +L R+ L +ER Sbjct: 285 TDFRLDEQGRLWCLEVNTLPGMTATSLLPQAAAAAGIGFAELCERICRLGIERCKG 340 >ref|NP_459135.1| (NC_003197) D-alanine-D-alanine ligase B, affects cell division [Salmonella typhimurium LT2] gb|AAL19094.1| (AE008700) D-alanine-D-alanine ligase B, affects cell division [Salmonella typhimurium LT2] Length = 306 Score = 264 bits (674), Expect = 1e-69 Identities = 106/349 (30%), Positives = 173/349 (49%), Gaps = 50/349 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 ++ ++ GG SAE +VSL S ++ + + + + Sbjct: 4 KIAVLLGGTSAERDVSLNSGAAVLAGLREGGINAHPV----------------------- 40 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 P +AQ+ +F +HG GEDG+LQGML + Sbjct: 41 -----DPQEVDVAQLKAM---------------GFQKVFIALHGRGGEDGTLQGMLELLG 80 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK---LGLP 181 LP+ GS V+ASA MDK +K L + AGL +AP++ LTRA E +++ LGLP Sbjct: 81 LPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSEEQKARISALGLP 140 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 L VKP+ +GSSVG++KV E A+ LAF+ D ++++E+ + G E A++G + Sbjct: 141 LIVKPSREGSSVGMTKVVEENALQGALSLAFQHDDEILIEKWLCGPEFTVAIVGEE---I 197 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 I FY Y+ KY+ D + PA + ++++ +QA++ LGC G R+ Sbjct: 198 LPSIRIQPAGTFYDYEAKYL-SDETQYFCPAGLDASQEAALQSLVLQAWKALGCTGWGRI 256 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 DV L + + + E NT PG T+ S+ P + +G+ ++ L+ R++ELA Sbjct: 257 DVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 >ref|NP_414634.1| (NC_000913) D-alanine-D-alanine ligase B, affects cell division [Escherichia coli K12] sp|P07862|DDLB_ECOLI D-ALANINE--D-ALANINE LIGASE B (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||CEECDL D-alanine--D-alanine ligase (EC 6.3.2.4) B - Escherichia coli pdb|1IOV| Complex Of D-Ala:d-Ala Ligase With Adp And A Phosphoryl Phosphonate pdb|2DLN| Mol_id: 1; Molecule: D-Alanine--D-Alanine Ligase; Chain: Null; Ec: 6.3.2.4 emb|CAA38869.1| (X55034) D-Ala:D-Ala ligase (Ddl) [Escherichia coli] gb|AAA23672.1| (M14029) ddl cell wall enzyme [Escherichia coli] gb|AAA23815.1| (K02668) D-alanine:D-alanine ligase [Escherichia coli] dbj|BAA01357.1| (D10483) D-alanine-D-alanine ligase [Escherichia coli] gb|AAC73203.1| (AE000118) D-alanine-D-alanine ligase B, affects cell division [Escherichia coli K12] Length = 306 Score = 263 bits (673), Expect = 2e-69 Identities = 109/349 (31%), Positives = 173/349 (49%), Gaps = 50/349 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 ++ ++ GG SAE EVSL S ++ + + D + Sbjct: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV----------------------- 40 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 P + Q+ +F +HG GEDG+LQGML + Sbjct: 41 -----DPKEVDVTQLKSM---------------GFQKVFIALHGRGGEDGTLQGMLELMG 80 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK---LGLP 181 LP+ GS V+ASA MDK +K L + AGL +AP++ LTRA + ++ LGLP Sbjct: 81 LPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLP 140 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 + VKP+ +GSSVG+SKV +E A+ LAF+ D +V++E+ + G E A+LG + Sbjct: 141 VIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE---I 197 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 I + FY Y+ KY+ D + PA + ++A+ ++A+ TLGC G R+ Sbjct: 198 LPSIRIQPSGTFYDYEAKYL-SDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRI 256 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 DV L + + + E NT PG T+ S+ P + +G+ ++ L+ R++ELA Sbjct: 257 DVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 >ref|NP_454742.1| (NC_003198) D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica serovar Typhi] emb|CAD01287.1| (AL627265) D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica serovar Typhi] Length = 306 Score = 263 bits (672), Expect = 3e-69 Identities = 107/349 (30%), Positives = 173/349 (48%), Gaps = 50/349 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 ++ ++ GG SAE +VSL S ++ + + D + Sbjct: 4 KIAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPV----------------------- 40 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 P +AQ+ +F +HG GEDG+LQGML + Sbjct: 41 -----DPQEVDVAQLKAM---------------GFQKVFIALHGRGGEDGTLQGMLELLG 80 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK---LGLP 181 LP+ GS V+ASA MDK +K L + AGL +AP++ LTRA E +++ LGLP Sbjct: 81 LPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSEEQKARISALGLP 140 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 L VKP+ +GSSVG++KV E A+ LAF+ D ++++E+ + G E A++G + Sbjct: 141 LIVKPSREGSSVGMTKVVEENALQGALSLAFQHDDEILIEKWLCGPEFTVAIVGEE---I 197 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 I FY Y+ KY+ D + PA + ++++ +QA++ LGC G R+ Sbjct: 198 LPSIRIQPAGTFYDYEAKYL-SDETQYFCPAGLEASQEAALQSLVLQAWKALGCTGWGRI 256 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 DV L + + + E NT PG T+ S+ P + +G+ ++ L+ R++ELA Sbjct: 257 DVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 >ref|NP_285788.1| (NC_002655) D-alanine-D-alanine ligase B, affects cell division [Escherichia coli O157:H7 EDL933] ref|NP_308123.1| (NC_002695) D-alanine-D-alanine ligase B [Escherichia coli O157:H7] gb|AAG54396.1|AE005186_2 (AE005186) D-alanine-D-alanine ligase B, affects cell division [Escherichia coli O157:H7 EDL933] dbj|BAB33519.1| (AP002550) D-alanine-D-alanine ligase B [Escherichia coli O157:H7] Length = 306 Score = 262 bits (671), Expect = 3e-69 Identities = 108/349 (30%), Positives = 172/349 (48%), Gaps = 50/349 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 ++ ++ GG SAE EVSL S ++ + + D + Sbjct: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV----------------------- 40 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 P + Q+ +F +HG GEDG+LQGML + Sbjct: 41 -----DPKEVDVTQLKSM---------------GFQKVFIALHGRGGEDGTLQGMLELMG 80 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK---LGLP 181 LP+ GS V+ASA MDK +K L + AGL +AP++ LTR + ++ LGLP Sbjct: 81 LPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRVEFEKGLSDKQLAEISALGLP 140 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 + VKP+ +GSSVG+SKV +E A+ LAF+ D +V++E+ + G E A+LG + Sbjct: 141 VIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE---I 197 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 I + FY Y+ KY+ D + PA + ++A+ ++A+ TLGC G R+ Sbjct: 198 LPSVRIQPSGTFYDYEAKYL-SDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRI 256 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 DV L + + + E NT PG T+ S+ P + +G+ ++ L+ R++ELA Sbjct: 257 DVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 >pdb|1IOW| Complex Of Y216f D-Ala:d-Ala Ligase With Adp And A Phosphoryl Phosphinate Length = 306 Score = 261 bits (667), Expect = 8e-69 Identities = 108/349 (30%), Positives = 173/349 (48%), Gaps = 50/349 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 ++ ++ GG SAE EVSL S ++ + + D + Sbjct: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV----------------------- 40 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 P + Q+ +F +HG GEDG+LQGML + Sbjct: 41 -----DPKEVDVTQLKSM---------------GFQKVFIALHGRGGEDGTLQGMLELMG 80 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK---LGLP 181 LP+ GS V+ASA MDK +K L + AGL +AP++ LTRA + ++ LGLP Sbjct: 81 LPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLP 140 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 + VKP+ +GSSVG+SKV +E A+ LAF+ D +V++E+ + G E A+LG + Sbjct: 141 VIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE---I 197 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 I + FY Y+ K++ D + PA + ++A+ ++A+ TLGC G R+ Sbjct: 198 LPSIRIQPSGTFYDYEAKFL-SDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRI 256 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 DV L + + + E NT PG T+ S+ P + +G+ ++ L+ R++ELA Sbjct: 257 DVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 >ref|NP_386277.1| (NC_003047) PROBABLE D-ALANINE--D-ALANINE LIGASE B PROTEIN [Sinorhizobium meliloti] emb|CAC46750.1| (AL591789) PROBABLE D-ALANINE--D-ALANINE LIGASE B PROTEIN [Sinorhizobium meliloti] Length = 308 Score = 260 bits (666), Expect = 1e-68 Identities = 106/357 (29%), Positives = 168/357 (46%), Gaps = 60/357 (16%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M V ++ GG S+E VSL S DA++ + V + + + + + Sbjct: 1 MSSKHVAVLLGGFSSERPVSLSSGTACADALEAEGYRVTRVDVGRDVAAVLQE------- 53 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 DV+F +HG GEDG++QG+L Sbjct: 54 ------------------------------------LRPDVVFNALHGPFGEDGTIQGIL 77 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 +P+ S VLASA MDKD K + + AG+ +A + + R + N + Sbjct: 78 EYLEIPYTHSGVLASALAMDKDQAKHVAKAAGIPVAEALVMDRRSFGNQHPMK------P 131 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAV--DLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 P VKP +GSS GV V ++ + V + + +V+VE+ I GRE C V+G+ Sbjct: 132 PYVVKPVREGSSFGVVIVKEDQSHPPQVITSSEWRYGDRVMVERYIAGREFTCGVMGD-- 189 Query: 239 PQASTCGEIVLT-SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 A EI+ FY YD+KY+ G+K V+PA I+P I KI+ +A++A+Q +GC G Sbjct: 190 -VALGVTEIIPQGHAFYDYDSKYVKG-GSKHVIPAQISPNIYQKIQTLALKAHQAIGCRG 247 Query: 298 MARVDVFLTP----ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 ++R D E E++ EINT PG T S+ P++ Q +GL + + + ++E A Sbjct: 248 VSRSDFRFDDRGDGEGELIWLEINTQPGMTPTSLVPEMAQHAGLQFGEFLRWMVEDA 304 >ref|NP_253100.1| (NC_002516) D-alanine--D-alanine ligase [Pseudomonas aeruginosa] pir||C83094 D-alanine--D-alanine ligase PA4410 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAF26456.1| (U19797) D-alanine:D-alanine ligase B [Pseudomonas aeruginosa] gb|AAG07798.1|AE004856_9 (AE004856) D-alanine--D-alanine ligase [Pseudomonas aeruginosa] Length = 319 Score = 260 bits (664), Expect = 2e-68 Identities = 104/348 (29%), Positives = 155/348 (43%), Gaps = 51/348 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 RV ++FGGKSAE EVSL+S ++ ++ + D + + + + + Sbjct: 20 RVAVLFGGKSAEREVSLKSGAMVLQSLLAAGVDAFGIDVGEDLLQRLVE----------- 68 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 +D F I+HG GEDGS+QG+L A Sbjct: 69 --------------------------------EKIDRAFIILHGRGGEDGSMQGLLECAG 96 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ GS VLASA MDK TKR+ GL + L E +LG PL V Sbjct: 97 IPYTGSGVLASALAMDKLRTKRVWLSLGLPTPDYAVL----ASEDDCREAAQRLGFPLIV 152 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KPA++GSS+G++KV ++ A A +D +V+VEQ I G E A L Q Sbjct: 153 KPAHEGSSIGMAKVGGLDELIAAWREAARYDSQVLVEQWISGPEFTVATLR---GQVLPA 209 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 + FY YD KY+ D VP + +++ + +A LG G R DV Sbjct: 210 IRLGTPHTFYDYDAKYLASDTR-YQVPCGLDEAKERELKELTARACDALGIQGWGRADVM 268 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 E + E+NT PG T+ S+ P +A+GL + L+ ++ + E Sbjct: 269 QDAEGRFWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADSRE 316 >ref|NP_103112.1| (NC_002678) D-alanyl-D-alanine ligase [Mesorhizobium loti] dbj|BAB48898.1| (AP002997) D-alanyl-D-alanine ligase [Mesorhizobium loti] Length = 308 Score = 259 bits (661), Expect = 5e-68 Identities = 103/357 (28%), Positives = 169/357 (46%), Gaps = 60/357 (16%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+ V ++ GG S+E VSL S K DA++ + V + + + +++ Sbjct: 1 MKSKHVAVLLGGFSSERPVSLSSGKACADALENEGYQVTRVDVGRDVGSVLAE------- 53 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 DV F +HG GEDG++QG+L Sbjct: 54 ------------------------------------LKPDVAFNALHGPFGEDGTIQGIL 77 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 +P+ S VLASA M+K+ K++++ G+ +A R N + Sbjct: 78 EYLGIPYTHSGVLASALAMNKEQAKKIVKTVGVPVAESKVANRFAIQNKHPMK------P 131 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAV--DLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 P +KP N+GSS GV V+ + + V +++ V+VE+ I GRE+ CAV+G+ Sbjct: 132 PYVIKPVNEGSSFGVVIVSEGQSHPPQVVGSSEWKYGDTVMVERYIHGRELTCAVMGD-- 189 Query: 239 PQASTCGEIVLT-SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 A EI+ T FY YD+KY+ G+K PA ++P I KI+ +A++A+Q +GC G Sbjct: 190 -VALGVCEIIPTGHSFYDYDSKYV-AGGSKHECPAKVSPNIYQKIQTLALKAHQAVGCRG 247 Query: 298 MARVDVFLT----PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 ++R D EVV E+NT PG T S+ P++ +G + +L++ ++E A Sbjct: 248 VSRSDFRYDDRHSENGEVVWLEVNTQPGMTPTSLVPEIAAHAGHSFGELLSWMVEDA 304 >ref|NP_404198.1| (NC_003143) D-alanine--D-alanine ligase B [Yersinia pestis] emb|CAC89413.1| (AJ414143) D-alanine--D-alanine ligase B [Yersinia pestis] Length = 306 Score = 258 bits (659), Expect = 7e-68 Identities = 107/349 (30%), Positives = 164/349 (46%), Gaps = 50/349 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 +V ++ GG SAE EVSL S + ++ + ++ D + Sbjct: 4 KVAVLLGGTSAEREVSLLSGQAVLAGLKEAGIDAYGVD---------------------- 41 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 D +F +HG GEDG+LQG+L Sbjct: 42 ---------------------TKDFPVTQLKEQGFDKVFIALHGRGGEDGTLQGVLEFLQ 80 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR---HNISFAEVESKLGLP 181 LP+ GS V+ASA MDK TK + + GL I+P++ L R +KLGLP Sbjct: 81 LPYTGSGVMASALTMDKLRTKLVWQALGLPISPYVALNRQQFETLSPEELVACVAKLGLP 140 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 L VKP+++GSSVG+SKV + A+ AF+ D V++E+ + G E A+LG++ Sbjct: 141 LIVKPSHEGSSVGMSKVDHASELQKALVEAFQHDSDVLIEKWLSGPEFTVAILGDE---V 197 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 I FY YD KY+ D + P+ ++ E ++ A+A+QAY L C+G RV Sbjct: 198 LPSIRIQPPGVFYDYDAKYL-SDKTQYFCPSGLSDESEQQLAALALQAYHALDCSGWGRV 256 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 DV + + E+NT PG T+ S+ P + GL ++ L+ R++ LA Sbjct: 257 DVMQDRDGHFYLLEVNTSPGMTSHSLVPMAARQYGLSFSQLVARILMLA 305 >gb|AAK97387.1|AF363615_1 (AF363615) D-alanine:D-alanine ligase 2 [Enterococcus gallinarum] Length = 343 Score = 252 bits (645), Expect = 3e-66 Identities = 96/353 (27%), Positives = 166/353 (46%), Gaps = 18/353 (5%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGI----DKQGQWHVSDASNYLL 59 + + ++ GG S E +VSL S I A+++ +LL + +++ Sbjct: 1 MNIVVLAGGLSHERDVSLSSGGQIAMALEERGHRALLLDLYQGNNEKTFESAYSIQKQEE 60 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 N D + P L Q ++ LI + D F +HG +GE+G LQ Sbjct: 61 NPYDYFVVENEPDIEKLIQ-KNSNQKNLIGKNVVELCLNADFCFIALHGGIGENGKLQAF 119 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 + + + GS S MDKD+ K+L++ + + + S Sbjct: 120 FDIYGIRYSGSHYKGSLLAMDKDIAKQLMKLNDIPTPKWQLWEQGQEVYYS--------- 170 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P VKP + GSS+GV V ++EQ+ A+ A +++ KV++EQ I+GRE VLG+ Sbjct: 171 TPCVVKPIDNGSSIGVEIVENKEQFFKALKKAEKYNSKVMIEQKIEGREFSVGVLGD--- 227 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 EI+ FY Y+ KY + + PA I+ ++ ++ + V + LG + + Sbjct: 228 NVLPAIEIIPQQGFYNYENKYQKG-ATEEITPADISSDLATRLSEMTVLVNKVLGLSIYS 286 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 RVD +T E ++ E N+LPG T S+ P+ +A G+ +++L ++EL+LE Sbjct: 287 RVDYIVTKELDIYCIEANSLPGMTPTSLLPQEAEAIGISFSELCETIVELSLE 339 >ref|NP_232962.1| (NC_002506) D-alanine--D-alanine ligase [Vibrio cholerae] pir||A82443 D-alanine--D-alanine ligase VCA0572 [imported] - Vibrio cholerae (group O1 strain N16961) gb|AAF96474.1| (AE004388) D-alanine--D-alanine ligase [Vibrio cholerae] Length = 334 Score = 252 bits (644), Expect = 4e-66 Identities = 104/351 (29%), Positives = 179/351 (50%), Gaps = 29/351 (8%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKS-RFDVVLLGIDKQGQWHVSDASNYLL 59 M K + ++ GG S+EHE+SL SA I ++ + F V+ + + K+G Sbjct: 1 MTKTTILLLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEG-----------W 49 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 ++ A + L ++ +L + +D + P +HG GE G +Q M Sbjct: 50 FSEQGALVYLDTNSATLNSDKASYP--------------IDFVVPCIHGFPGETGDIQSM 95 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L +A +P++G ASA +K +K + P++ LT+ +I A+ Sbjct: 96 LELAGIPYLGCGPEASANSFNKITSKLWYDALDIPNTPYLFLTQNTPSSIDKAKQAFGHW 155 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG-NDN 238 +FVK A QGSSVG KVT+E+Q A A++ AF F +V+VEQ +K RE+E + N Sbjct: 156 GSIFVKAARQGSSVGCYKVTTEDQIAPAIEAAFGFSEQVLVEQAVKPRELEVSAYEMNGK 215 Query: 239 PQASTCGEIV-LTSDFYAYDTKYIDEDGAKVVVPAA-IAPEINDKIRAIAVQAYQTLGCA 296 S GE++ FY+Y+ KY A+ V+ A + + + I+ A + + + Sbjct: 216 LYISKPGEVIAPEGTFYSYEEKYSANSHARTVLEAENLTEKHKELIQTYAERVFIHMKLR 275 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 ++R+D FLT E ++ +NE+NT PG T ISM+PK+ + +G +++ + + + Sbjct: 276 HLSRIDFFLTQEGQIYLNEVNTFPGMTPISMFPKMLEHNGHRFSEFLVQCV 326 >ref|NP_242487.1| (NC_002570) D-alanyl-D-alanine ligase A [Bacillus halodurans] dbj|BAB05340.1| (AP001512) D-alanyl-D-alanine ligase A [Bacillus halodurans] Length = 305 Score = 247 bits (631), Expect = 1e-64 Identities = 100/352 (28%), Positives = 168/352 (47%), Gaps = 49/352 (13%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ +++GG SAE EVSL S K I++A+ + +V+ + Sbjct: 1 MKIAVLYGGTSAEREVSLSSGKGIMEALKANGHEVIGIDFHPDQV--------------- 45 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 VD++F +HG LGEDG +Q +L + Sbjct: 46 ----------------------------RDLVDLDVDLVFIGLHGRLGEDGKVQALLDLL 77 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 N+P+VG+ V SA MDK K AG+ +A + L P+ Sbjct: 78 NIPYVGTGVQGSALAMDKAKAKLFFEKAGIRVAEEVVLHSFTY---DANAFNFTGTYPVV 134 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN-DNPQAS 242 VKP +GS++G++ +EE+ ++ AF D +++E+ I G E+ AVLGN ++ Sbjct: 135 VKPNQEGSTIGLTVAETEEELLQGIEEAFRHDDTILIEEFIAGTEVTVAVLGNKGEERSL 194 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 EIV + Y Y++KY ++ +VPA I+ E ++ AV+A+Q LGC +RVD Sbjct: 195 PVVEIVPKNKLYDYESKYAPGM-SEHIVPARISEEHTAYVQQAAVRAHQALGCDVYSRVD 253 Query: 303 VFLTPEN-EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 + + + VI ++NTLPG T S+YP + G+ Y ++I + L+L++ Sbjct: 254 FIVPNDGSDPVILKVNTLPGMTPTSLYPDAAKGVGMSYEEMIQTFVNLSLKK 305 >ref|NP_520963.1| (NC_003295) PROBABLE D-ALANINE--D-ALANINE LIGASE B PROTEIN [Ralstonia solanacearum] emb|CAD16549.1| (AL646072) PROBABLE D-ALANINE--D-ALANINE LIGASE B PROTEIN [Ralstonia solanacearum] Length = 331 Score = 245 bits (627), Expect = 3e-64 Identities = 112/348 (32%), Positives = 165/348 (47%), Gaps = 50/348 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 +VG++ GG+SAE E+SL S ++ A+ D Sbjct: 19 KVGVILGGRSAEREISLLSGNGVLAALRSRGVDAHPF----------------------- 55 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 P +A + + H+++ + +HG GEDG++QG+L Sbjct: 56 -----DPGTQPVAGLAAQGFHRVVIS---------------LHGRFGEDGTIQGLLEQFG 95 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ GS VLASA MDK+ TKRL + L F+ L + V +LGLPL V Sbjct: 96 IPYTGSGVLASALAMDKEATKRLWQTHSLPTPDFVML----HAGADWQAVADRLGLPLIV 151 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG-NDNPQAST 243 KPA +GSS+G++KVTS + A + A D V+ EQ I G E+ CAV+G ++ A Sbjct: 152 KPAREGSSIGLTKVTSVAELPAAYEKAARLDRDVMAEQFIDGDELTCAVIGEGEHATALP 211 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 IV Y Y KY +D PA I E +++A+ VQAY++LGC G R D+ Sbjct: 212 LIRIVAPQANYDYQHKYFTDDTRYE-CPAPIPAEAAARVQALVVQAYRSLGCRGWGRADI 270 Query: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 L + + E+NT PG T S+ P +A G+ Y D + +L A Sbjct: 271 MLRKHDGAPFLLEMNTSPGMTGHSLVPMAARAVGISYEDFVLQLAATA 318 >gb|AAB62175.1| (U94527) vancomycin resistance protein B [Enterococcus faecium] Length = 267 Score = 243 bits (620), Expect = 2e-63 Identities = 90/282 (31%), Positives = 151/282 (52%), Gaps = 21/282 (7%) Query: 35 RFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ 94 +FD +GI K G W + AD + P + H L+ + + Sbjct: 1 KFDPHYIGITKNGVWKLCKKPCTEWEAD----------SLPAIFSPDRKTHGLLVMKERE 50 Query: 95 -PLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGL 153 +DV FP++HG GEDG++QG+ ++ +P+VG D+ +SAACMDK + L ++AG+ Sbjct: 51 YETRRIDVAFPVLHGKCGEDGAIQGLFELSGIPYVGCDIQSSAACMDKSLAYILTKNAGI 110 Query: 154 NIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFE 213 + F + + ++ L P+FVKPA GSS GV+KV S E+ A++ A + Sbjct: 111 AVPEFQMIEKGDKPE------ARTLTYPVFVKPARSGSSFGVTKVNSTEELNAAIEAAGQ 164 Query: 214 FDHKVIVEQGIKGREIECAVLGND-NPQASTCGEIVLTSDFYAYDTKYIDEDGAK---VV 269 +D K+++EQ I G E+ CAV+GN+ + +I L+ + + E G++ ++ Sbjct: 165 YDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMII 224 Query: 270 VPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEV 311 VPA I E ++++ A + Y+ LGC G+ARVD+FL + + Sbjct: 225 VPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFLQEDGGI 266 >pir||T51694 D-alanine--D-alanine ligase (EC 6.3.2.4) [imported] - Prochlorococcus sp. (fragment) emb|CAB56200.1| (AJ011025) D-alanine-D-alanine ligase [Prochlorococcus sp.] Length = 310 Score = 242 bits (619), Expect = 4e-63 Identities = 109/317 (34%), Positives = 180/317 (56%), Gaps = 17/317 (5%) Query: 40 LLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTV 99 L ++K G W +D S LL + QV K E ++ Q + Sbjct: 2 LFIVNKHGVWLDNDQSLVLLKEK------RKNETIDKNQVFPKREINFLNTIEFQ---GI 52 Query: 100 DVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFI 159 D+ FP++HG GEDG++ G+L+ P VG +L SA MDK + K++ + ++ Sbjct: 53 DIWFPLLHGVNGEDGAIHGLLKFTQKPIVGGGILGSALGMDKILMKKIFSHLEIPQVNYL 112 Query: 160 TLTRANRHNISFA-----EVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEF 214 + + + E+ KL LP+FVKPAN GSS+G+SK + + A+ A+E Sbjct: 113 DIQNQDLSDDKVKNNLSVEIIEKLKLPVFVKPANSGSSLGISKAKTRSEIIKALQKAWEI 172 Query: 215 DHKVIVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAI 274 D ++++E+G+ RE+EC ++GN AS GE+ ++D+Y YD+KY ++++PA I Sbjct: 173 DSRIVIEEGLDVRELECGIIGNLKLTASEIGEVSYSTDWYDYDSKYS--MDNQIIIPADI 230 Query: 275 APEINDKIRAIAVQAYQTLGCAGMARVDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQ 333 +I+++I+ IA+++ + L G ARVD FL N++ +NEINT+PGFT+ SM+P LW Sbjct: 231 DSQISEQIKDIAIRSCRALNIYGFARVDFFLEKISNKIFLNEINTIPGFTSKSMFPMLWN 290 Query: 334 ASGLGYTDLITRLIELA 350 ASGL L+ +L++++ Sbjct: 291 ASGLNIDQLVAKLVDIS 307 >ref|NP_355054.1| (NC_003062) AGR_C_3788p [Agrobacterium tumefaciens] [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAK87839.1| (AE008125) AGR_C_3788p [Agrobacterium tumefaciens str. C58 (Cereon)] Length = 334 Score = 241 bits (616), Expect = 6e-63 Identities = 104/357 (29%), Positives = 165/357 (46%), Gaps = 60/357 (16%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M V ++ GG S+E VSL S A++ + V + + + + + Sbjct: 27 MGGKHVAVLLGGFSSERPVSLSSGNACALALEGEGYKVTRVDVGRDVAAVLDE------- 79 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 DV F +HG GEDG++QG+L Sbjct: 80 ------------------------------------LRPDVAFNALHGPFGEDGTIQGIL 103 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 +P+ S VLASA MDK K++ AG+ +A + R + + L Sbjct: 104 EYLAIPYTHSGVLASALAMDKAQAKKVAAAAGIPVAGERVMNRFDFTSEHP------LQP 157 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAV--DLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 P VKP +GSS GV V ++ + + + F ++V+VE+ I GRE+ C VL + Sbjct: 158 PYVVKPVREGSSFGVVIVKEDQSHPPQILTSSEWPFGNQVMVERYIHGRELTCGVL---D 214 Query: 239 PQASTCGEIVL-TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 +A E+V +FY YD KY G+K V+PA I+P+I KI+ +AV A+Q +GC G Sbjct: 215 GEALGVTEVVPLGHNFYDYDAKY-AAGGSKHVIPAGISPKIYQKIQTLAVMAHQAIGCRG 273 Query: 298 MARVDVFLT----PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 ++R D + EV+ E+NT PG T S+ P++ +G + DL++ ++E A Sbjct: 274 VSRSDFRYDDRFSEDGEVIWLEVNTQPGMTPTSLVPEMAAHAGRSFGDLVSWMVEDA 330 >ref|NP_532764.1| (NC_003304) D-alanine:D-alanine ligase [Agrobacterium tumefaciens str. C58 (U. Washington)] gb|AAL43080.1| (AE009159) D-alanine:D-alanine ligase [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 308 Score = 240 bits (613), Expect = 2e-62 Identities = 104/357 (29%), Positives = 165/357 (46%), Gaps = 60/357 (16%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M V ++ GG S+E VSL S A++ + V + + + + + Sbjct: 1 MGGKHVAVLLGGFSSERPVSLSSGNACALALEGEGYKVTRVDVGRDVAAVLDE------- 53 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 DV F +HG GEDG++QG+L Sbjct: 54 ------------------------------------LRPDVAFNALHGPFGEDGTIQGIL 77 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 +P+ S VLASA MDK K++ AG+ +A + R + + L Sbjct: 78 EYLAIPYTHSGVLASALAMDKAQAKKVAAAAGIPVAGERVMNRFDFTSEHP------LQP 131 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAV--DLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 P VKP +GSS GV V ++ + + + F ++V+VE+ I GRE+ C VL + Sbjct: 132 PYVVKPVREGSSFGVVIVKEDQSHPPQILTSSEWPFGNQVMVERYIHGRELTCGVL---D 188 Query: 239 PQASTCGEIVL-TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 +A E+V +FY YD KY G+K V+PA I+P+I KI+ +AV A+Q +GC G Sbjct: 189 GEALGVTEVVPLGHNFYDYDAKY-AAGGSKHVIPAGISPKIYQKIQTLAVMAHQAIGCRG 247 Query: 298 MARVDVFLT----PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 ++R D + EV+ E+NT PG T S+ P++ +G + DL++ ++E A Sbjct: 248 VSRSDFRYDDRFSEDGEVIWLEVNTQPGMTPTSLVPEMAAHAGRSFGDLVSWMVEDA 304 >dbj|BAA99407.1| (AB029826) 3-methylcrotonyl-CoA carboxylase biotin-containing subunit [Homo sapiens] gb|AAG53095.1|AF310972_1 (AF310972) 3-methylcrotonyl-CoA carboxylase alpha subunit [Homo sapiens] Length = 725 Score = 239 bits (611), Expect = 3e-62 Identities = 56/340 (16%), Positives = 124/340 (36%), Gaps = 33/340 (9%) Query: 23 SAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK 82 + +NI + +R ++ + + V + Y + H+ + A S+ P + Sbjct: 45 TGRNITKVLIANRGEIACRVMRTAKKLGVQTVAVYSEADRNSMHVDMADEAYSIGPAPSQ 104 Query: 83 HEHQ-LIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDK 141 + + I P G L E+ + + + F+G A K Sbjct: 105 QSYLSMEKIIQVAKTSAAQAIHPGC-GFLSENMEFAELCKQEGIIFIGPPPSAIRDMGIK 163 Query: 142 DVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSE 201 +K ++ AG+ + ++ + E ++G P+ +K G G+ V SE Sbjct: 164 STSKSIMAAAGVPVVEGY--HGEDQSDQCLKEHARRIGYPVMIKAVRGGGGKGMRIVRSE 221 Query: 202 EQYAIAVDLAFEF------DHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFY 254 +++ ++ A D +++E+ + R +E V G+ + A Y Sbjct: 222 QEFQEQLESARREAKKSFNDDAMLIEKFVDTPRHVEVQVFGDHHGNA-----------VY 270 Query: 255 AYDTKYIDEDGAKVVVP----AAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENE 310 ++ + + ++ I E+ K+ AV+A + + G V+ + ++ Sbjct: 271 LFERDCSVQRRHQKIIEEAPAPGIKSEVRKKLGEAAVRAAKAVNYVGAGTVEFIMDSKHN 330 Query: 311 VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 E+NT + P +G TDL+ + +A Sbjct: 331 FCFMEMNTRLQVEH----PVTEMITG---TDLVEWQLRIA 363 >ref|NP_064551.2| (NM_020166) methylcrotonoyl-Coenzyme A carboxylase 1 (alpha); 3-methylcrotonyl-CoA carboxylase biotin-containing subunit [Homo sapiens] dbj|BAB14377.1| (AK023051) unnamed protein product [Homo sapiens] gb|AAG50245.1|AF310339_1 (AF310339) 3-methylcrotonyl-CoA carboxylase alpha subunit [Homo sapiens] gb|AAH04187.1|AAH04187 (BC004187) methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [Homo sapiens] gb|AAH04214.1|AAH04214 (BC004214) methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [Homo sapiens] Length = 725 Score = 239 bits (611), Expect = 3e-62 Identities = 56/340 (16%), Positives = 124/340 (36%), Gaps = 33/340 (9%) Query: 23 SAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK 82 + +NI + +R ++ + + V + Y + H+ + A S+ P + Sbjct: 45 TGRNITKVLIANRGEIACRVMRTAKKLGVQTVAVYSEADRNSMHVDMADEAYSIGPAPSQ 104 Query: 83 HEHQ-LIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDK 141 + + I P G L E+ + + + F+G A K Sbjct: 105 QSYLSMEKIIQVAKTSAAQAIHPGC-GFLSENMEFAELCKQEGIIFIGPPPSAIRDMGIK 163 Query: 142 DVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSE 201 +K ++ AG+ + ++ + E ++G P+ +K G G+ V SE Sbjct: 164 STSKSIMAAAGVPVVEGY--HGEDQSDQCLKEHARRIGYPVMIKAVRGGGGKGMRIVRSE 221 Query: 202 EQYAIAVDLAFEF------DHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFY 254 +++ ++ A D +++E+ + R +E V G+ + A Y Sbjct: 222 QEFQEQLESARREAKKSFNDDAMLIEKFVDTPRHVEVQVFGDHHGNA-----------VY 270 Query: 255 AYDTKYIDEDGAKVVVP----AAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENE 310 ++ + + ++ I E+ K+ AV+A + + G V+ + ++ Sbjct: 271 LFERDCSVQRRHQKIIEEAPAPGIKSEVRKKLGEAAVRAAKAVNYVGAGTVEFIMDSKHN 330 Query: 311 VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 E+NT + P +G TDL+ + +A Sbjct: 331 FCFMEMNTRLQVEH----PVTEMITG---TDLVEWQLRIA 363 >gb|AAK67986.1|AF297332_1 (AF297332) 3-methylcrotonyl-CoA carboxylase biotin-containing subunit [Homo sapiens] Length = 725 Score = 239 bits (611), Expect = 3e-62 Identities = 56/340 (16%), Positives = 124/340 (36%), Gaps = 33/340 (9%) Query: 23 SAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK 82 + +NI + +R ++ + + V + Y + H+ + A S+ P + Sbjct: 45 TGRNITKVLIANRGEIACRVMRTAKKLGVQTVAVYSEADRNSMHVDMADEAYSIGPAPSQ 104 Query: 83 HEHQ-LIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDK 141 + + I P G L E+ + + + F+G A K Sbjct: 105 QSYLSMEKIIQVAKTSAAQAIHPGC-GFLSENMEFAELCKQEGIIFIGPPPSAIRDMGIK 163 Query: 142 DVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSE 201 +K ++ AG+ + ++ + E ++G P+ +K G G+ V SE Sbjct: 164 STSKSIMAAAGVPVVEGY--HGEDQSDQCLKEHARRIGYPVMIKAVRGGGGKGMRIVRSE 221 Query: 202 EQYAIAVDLAFEF------DHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFY 254 +++ ++ A D +++E+ + R +E V G+ + A Y Sbjct: 222 QEFQEQLESARREAKKSFNDDAMLIEKFVDTPRHVEVQVFGDHHGNA-----------VY 270 Query: 255 AYDTKYIDEDGAKVVVP----AAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENE 310 ++ + + ++ I E+ K+ AV+A + + G V+ + ++ Sbjct: 271 LFERDCSVQRRHQKIIEEAPAPGIKSEVRKKLGEAAVRAAKAVNYVGAGTVEFIMDSKHN 330 Query: 311 VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 E+NT + P +G TDL+ + +A Sbjct: 331 FCFMEMNTRLQVEH----PVTEMITG---TDLVEWQLRIA 363 >gb|AAB62174.1| (U94526) vancomycin resistance protein B [Enterococcus faecium] Length = 267 Score = 239 bits (610), Expect = 4e-62 Identities = 89/282 (31%), Positives = 149/282 (52%), Gaps = 21/282 (7%) Query: 35 RFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ 94 +FD +GI K G W + AD + P + H L+ + + Sbjct: 1 KFDPHYIGITKNGVWKLCKKPCTEWEAD----------SLPAILSPDRKTHGLLVMKESE 50 Query: 95 -PLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGL 153 +DV FP++HG GEDG++QG+ ++ +P+VG D+ +SAACMDK + L ++AG+ Sbjct: 51 YETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGI 110 Query: 154 NIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFE 213 + F + + ++ L P+FVKPA GSS GV+KV E+ A++ A + Sbjct: 111 AVPEFQMIDKGDKPE------AGALTYPVFVKPARSGSSFGVTKVNGTEELNAAIEAAGQ 164 Query: 214 FDHKVIVEQGIKGREIECAVLGND-NPQASTCGEIVLTSDFYAYDTKYIDEDGAK---VV 269 +D K+++EQ I G E+ CAV+GN+ + +I L+ + + E G++ + Sbjct: 165 YDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMIT 224 Query: 270 VPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEV 311 VPA I E ++++ A + Y+ LGC G+ARVD+FL + + Sbjct: 225 VPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFLQEDGGI 266 >gb|AAB62176.1| (U94528) vancomycin resistance protein B [Enterococcus faecium] gb|AAB62177.1| (U94529) vancomycin resistance protein B [Enterococcus faecium] gb|AAB62178.1| (U94530) vancomycin resistance protein B [Enterococcus faecium] Length = 267 Score = 238 bits (609), Expect = 5e-62 Identities = 89/282 (31%), Positives = 149/282 (52%), Gaps = 21/282 (7%) Query: 35 RFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ 94 +FD +GI K G W + AD + P + H L+ + + Sbjct: 1 KFDPHYIGITKNGVWKLCKKPCTEWEAD----------SLPAILSPDRKTHGLLVMKESE 50 Query: 95 -PLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGL 153 +DV FP++HG GEDG++QG+ ++ +P+VG D+ +SAACMDK + L ++AG+ Sbjct: 51 YETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGI 110 Query: 154 NIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFE 213 + F + + ++ L P+FVKPA GSS GV+KV E+ A++ A + Sbjct: 111 AVPEFQIIDKGDKPE------AGALTYPVFVKPARSGSSFGVTKVNGTEELNAAIEAAGQ 164 Query: 214 FDHKVIVEQGIKGREIECAVLGND-NPQASTCGEIVLTSDFYAYDTKYIDEDGAK---VV 269 +D K+++EQ I G E+ CAV+GN+ + +I L+ + + E G++ + Sbjct: 165 YDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMIT 224 Query: 270 VPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEV 311 VPA I E ++++ A + Y+ LGC G+ARVD+FL + + Sbjct: 225 VPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFLQEDGGI 266 >sp|O51927|DDL_BUCAP D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAC46067.1| (AF012886) D-alanine: D-alanine ligase [Buchnera aphidicola] Length = 306 Score = 237 bits (606), Expect = 1e-61 Identities = 85/349 (24%), Positives = 170/349 (48%), Gaps = 50/349 (14%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K ++ ++ GG +E ++S++S I+ ++ +S F+ + + Sbjct: 2 KKKIAVLLGGILSERKISIKSGYAILQSLLRSGFNAYAID-TRD---------------- 44 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D + +HGT GEDGS+QG+L Sbjct: 45 --------------------------FPIMQLKKQGFDSAYIALHGTGGEDGSIQGILEY 78 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES---KLG 179 N+P+ GS +++SA +DK TK L + L + P I L + + +++ + KL Sbjct: 79 LNIPYTGSGIMSSAISLDKWRTKLLWKSLSLRVLPDIYLQKKDISKYTYSYILKKILKLK 138 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+ +KP N GSS+G++ V + +++LAF + + +I+E+ +KG E ++L N Sbjct: 139 FPVVIKPNNAGSSIGITIVNHPDLLIDSINLAFNYSNNIIIEKFLKGTEYTVSIL---NK 195 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 + +I+ ++FY Y +KYI+ + + P+ + + ++++ I A+ +LGC G Sbjct: 196 KVLPPIKIITKNNFYDYSSKYIES-STEYICPSGLNYQKEEELKKIVEIAWNSLGCKGCG 254 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 R+D L +++ + EINT+PG T+ S+ P + + + +LI ++++ Sbjct: 255 RIDAILDNKDKFWLLEINTIPGMTHRSLVPMASKKYRISFVNLILKILK 303 >gb|AAB49636.1| (U72704) vancomycin resistance protein [Enterococcus faecalis] Length = 261 Score = 235 bits (599), Expect = 6e-61 Identities = 87/277 (31%), Positives = 147/277 (52%), Gaps = 21/277 (7%) Query: 34 SRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNG 93 +FD +GI K+G W + AD + P + H L+ + Sbjct: 1 EKFDPHYIGITKRGVWKLCKKPCTEWEAD----------SLPAILSPDRKTHGLLVMKES 50 Query: 94 Q-PLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAG 152 + +DV FP++HG GEDG++QG+ ++ +P+VG D+ +SAACMDK + L ++AG Sbjct: 51 EYETRRIDVAFPVLHGKCGEDGAIQGLFELSGIPYVGCDIQSSAACMDKSLAYILTKNAG 110 Query: 153 LNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAF 212 + + F + + ++ L P+FVKPA GSS G++KV E+ A++ A Sbjct: 111 IAVPEFQMIDKGDKPET------GALTYPVFVKPARSGSSFGLTKVNGTEELNAAIEAAG 164 Query: 213 EFDHKVIVEQGIKGREIECAVLGND-NPQASTCGEIVLTSDFYAYDTKYIDEDGAK---V 268 ++D K+++EQ I G E+ CAV+GN+ + +I L+ + + E G++ + Sbjct: 165 QYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMI 224 Query: 269 VVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFL 305 VPA I ++++ A + Y+ LGC G+ARVD+FL Sbjct: 225 TVPADIPVGERNRVQETAKKVYRALGCRGLARVDLFL 261 >ref|NP_284760.1| (NC_003116) D-alanine--D-alanine ligase B [Neisseria meningitidis Z2491] pir||H81776 D-alanine--D-alanine ligase (EC 6.3.2.4) B NMA2060 [imported] - Neisseria meningitidis (group A strain Z2491) emb|CAB85278.1| (AL162758) D-alanine--D-alanine ligase B [Neisseria meningitidis Z2491] Length = 304 Score = 232 bits (591), Expect = 5e-60 Identities = 105/347 (30%), Positives = 155/347 (44%), Gaps = 50/347 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 +V ++ GG S+E E+SL S I++A+ D Sbjct: 6 KVAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAF----------------------- 42 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 P T L+++ + F I+HGT GEDG++QG L + Sbjct: 43 -----DPKETPLSELKAQGFQTA---------------FNILHGTYGEDGAVQGALELLG 82 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ GS V ASA MDK K + + GL + F L + F VE KLGLP+FV Sbjct: 83 IPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVL----HDDTDFDAVEEKLGLPMFV 138 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KPA +GSSVGV KV + + + F ++I E+ I G E C VL N + Sbjct: 139 KPAAEGSSVGVVKVKGKGRLKSVYEELKHFQGEIIAERFIGGGEYSCPVL---NGKGLPG 195 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 I+ ++FY Y+ KY D + +R +AV+ Q +G G RVD Sbjct: 196 IHIIPATEFYDYEAKYNRNDTIYQCPSEDLTEAEESLMRELAVRGAQAIGAEGCVRVDFL 255 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 + ++ + EINTLPG T S+ PK G+G+ DL +++ A Sbjct: 256 KDTDGKLYLLEINTLPGMTGHSLVPKSAAVMGVGFADLCIEILKTAH 302 >ref|NP_228072.1| (NC_000853) D-alanine--D-alanine ligase [Thermotoga maritima] sp|P46805|DDL_THEMA D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||B72400 D-alanine--D-alanine ligase (EC 6.3.2.4) B - Thermotoga maritima (strain MSB8) gb|AAD35347.1|AE001708_15 (AE001708) D-alanine--D-alanine ligase [Thermotoga maritima] Length = 303 Score = 230 bits (587), Expect = 2e-59 Identities = 92/349 (26%), Positives = 155/349 (44%), Gaps = 54/349 (15%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +RV ++ GG S E E+SL+S + + A++K ++ + + + Sbjct: 1 MRVALLMGGVSREREISLRSGERVKKALEKLGYEHTVFDVRED----------------- 43 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + L + DV+F ++HGT GEDG+LQ +L Sbjct: 44 -------------------------FLKKVDQLKSFDVVFNVLHGTFGEDGTLQAILDFL 78 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 + + GSD +S C DK VT R L+ + I F+ + + S LG P Sbjct: 79 GIRYTGSDAFSSMICFDKLVTYRFLKGT-VEIPDFVEIKEFMKT--------SPLGYPCV 129 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ-AS 242 VKP +GSS+GV S+E++ A+ VIV++ I GRE+ ++L + Sbjct: 130 VKPRREGSSIGVFVCESDEEFQHALKEDLPRYGSVIVQKYIPGREMTVSILETEKGFEIL 189 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 E+ FY Y KY + ++PA + P ++ +A++A+ GC G RVD Sbjct: 190 PVLELRPKRRFYDYVAKYTKG-ETEFILPAPLNPSEERLVKEMALKAFVEAGCRGFGRVD 248 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 + + EINT+PG T S P +A G+ + +L+ +++ A Sbjct: 249 GIFS-DGRFYFLEINTVPGLTETSDLPASAKAGGIEFEELVEIILKSAF 296 >gb|AAD53933.1|AF179611_17 (AF179611) D-alanine:D-alanine ligase [Zymomonas mobilis] Length = 321 Score = 230 bits (586), Expect = 2e-59 Identities = 101/370 (27%), Positives = 172/370 (46%), Gaps = 63/370 (17%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +K V ++ GG S+E E+SL S +++ A++++ + V LL +D+ + + +A Sbjct: 3 DKKHVVVLMGGWSSEREISLLSGRHVGKALEEAGYRVTLLDMDRDIAFKLREA------- 55 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 DV+F +HGT GEDGS+QG++ Sbjct: 56 ------------------------------------KPDVVFNALHGTPGEDGSIQGLMD 79 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 + + + S + ASA +DK++TK++L + + + R + + L P Sbjct: 80 LMAIRYTHSGLTASAIAIDKELTKKILTPENIPMPQGCLVERES------LYTKDPLPRP 133 Query: 182 LFVKPANQGSSVGVSKV----TSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 +KP N+GSSVGV+ + + ++ ++ E IKGRE+ AV+G+ Sbjct: 134 YVLKPVNEGSSVGVAIIDESFNDGQPIRKDQIDPWKNFKTLLAEPFIKGRELTVAVMGDK 193 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 A E+ + FY Y KY D + PA I EI +K A++++A+Q LGC G Sbjct: 194 ---ALAVTELCPNNGFYDYKAKYTDGM-TTHICPAKIPAEIAEKAMALSLKAHQLLGCRG 249 Query: 298 MARVDVFLTPE---NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 +R D E + + + E+NT PG T +S+ P+ + G+ Y L ++E AL Sbjct: 250 PSRSDFRWDDEAGLDGLFLLEVNTQPGMTPLSLVPEQAKQLGIDYVALCRMIVEEAL--- 306 Query: 355 AADNALKTTM 364 A D +T M Sbjct: 307 AEDTLQETKM 316 >ref|NP_273472.1| (NC_003112) D-alanine--D-alanine ligase [Neisseria meningitidis MC58] pir||C81201 D-alanine--D-alanine ligase NMB0424 [imported] - Neisseria meningitidis (group B strain MD58) gb|AAF40862.1| (AE002398) D-alanine--D-alanine ligase [Neisseria meningitidis MC58] Length = 304 Score = 230 bits (586), Expect = 2e-59 Identities = 104/347 (29%), Positives = 157/347 (44%), Gaps = 50/347 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 +V ++ GG S+E E+SL S I++A+ D Sbjct: 6 KVAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAF----------------------- 42 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 P T L+++ + F I+HGT GEDG++QG L + Sbjct: 43 -----DPKETPLSELKAQGFQTA---------------FNILHGTYGEDGAVQGALELLG 82 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ GS V ASA MDK K + + GL + F L + F VE KLGLP+FV Sbjct: 83 IPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVL----HDDTDFDAVEEKLGLPMFV 138 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KPA +GSSVGV KV + + + ++I E+ I G E C VL N + Sbjct: 139 KPAAEGSSVGVVKVKGKGRLKSVYEELKHLQGEIIAERFIGGGEYSCPVL---NGKGLPG 195 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 I+ ++FY Y+ KY +D + +R +AV+ Q +G G RVD Sbjct: 196 IHIIPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRGAQAIGAEGCVRVDFL 255 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 + ++ + EINTLPG T+ S+ PK +G+G+ DL +++ A Sbjct: 256 KDTDGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCIEILKTAH 302 >emb|CAA55651.1| (X79049) vanA2 [Oerskovia turbata] Length = 261 Score = 229 bits (585), Expect = 2e-59 Identities = 90/276 (32%), Positives = 142/276 (50%), Gaps = 20/276 (7%) Query: 45 KQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIF 103 K G W + + D+ S P K H L+ +N + + VDV F Sbjct: 1 KSGVWKMCEKPCAEWENDN---------CYSAVLSPDKKMHGLLVKKNHEYEINHVDVAF 51 Query: 104 PIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR 163 +HG GEDGS+QG+ ++ +PFVG D+ +SA CMDK +T + ++AG+ F + + Sbjct: 52 SALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVINK 111 Query: 164 ANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQG 223 +R V + P+F KPA GSS GV KV S ++ A++ A ++D K+++EQ Sbjct: 112 DDRP------VAATSTYPVFGKPARSGSSFGVKKVNSADELDYAIESARQYDSKILIEQA 165 Query: 224 IKGREIECAVLGND-NPQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEIN 279 + G E+ CAVLGN +I L + + E G++ + VPA ++ E Sbjct: 166 VSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEER 225 Query: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINE 315 +I+ + Y+ LGC G+ARVD+FL +V+NE Sbjct: 226 GRIQETGKKIYKALGCRGLARVDMFLQDNGRIVLNE 261 >emb|CAB95026.1| (AJ237851) D-alanine-D-alanine ligase [Prochlorococcus marinus] Length = 247 Score = 227 bits (580), Expect = 1e-58 Identities = 102/248 (41%), Positives = 153/248 (61%), Gaps = 7/248 (2%) Query: 109 TLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN--- 165 GEDGS+QG ++ P+VGS VL SA MDK K AGL + + + Sbjct: 1 PNGEDGSIQGFFQLTGKPYVGSGVLGSALGMDKIAMKAAFSAAGLPQVNYCEIHSIDLLD 60 Query: 166 --RHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQG 223 R + ++E++LG P F+KPAN GSSVG+SK +++ +DLA + D +++VE+ Sbjct: 61 KKRLSYLIQKIETQLGYPCFIKPANLGSSVGISKAYDKKELLNGLDLAAQLDSRIVVEKN 120 Query: 224 IKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIR 283 IK RE+ECAV+G + S GE+ +SD+Y YD+KY + K ++PA I +I+ +++ Sbjct: 121 IKARELECAVIGKKQIKTSCVGEVRYSSDWYDYDSKYSK-NSTKTLIPAPIPEKISKEVQ 179 Query: 284 AIAVQAYQTLGCAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDL 342 ++++ A + + G+ARVD F E + + INEINT+PGFT SMYP LW ASG+ + L Sbjct: 180 SLSILACKAISAEGIARVDFFYDEEKDSLWINEINTMPGFTEQSMYPMLWDASGIDISQL 239 Query: 343 ITRLIELA 350 + RLIE A Sbjct: 240 VARLIESA 247 >ref|NP_213366.1| (NC_000918) D-alanine:D-alanine ligase [Aquifex aeolicus] sp|O66806|DDL_AQUAE D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||B70347 D-alanine--D-alanine ligase (EC 6.3.2.4) B - Aquifex aeolicus gb|AAC06765.1| (AE000694) D-alanine:D-alanine ligase [Aquifex aeolicus] Length = 291 Score = 227 bits (579), Expect = 2e-58 Identities = 88/345 (25%), Positives = 163/345 (46%), Gaps = 56/345 (16%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +RV ++ GG+S+E E+SL++ K + A+ + +V L +DK+ + + Sbjct: 1 MRVVVLMGGRSSEREISLKTGKAVAKALRELGHEVYELDLDKELPCKLLE---------- 50 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 D +F +HG GEDG++QG+L + Sbjct: 51 ---------------------------------IKPDKVFIALHGRYGEDGTVQGLLEIL 77 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITL-TRANRHNISFAEVESKLGLPL 182 ++P+ GSD +ASA +DKD TKR+++ G+N + T + + N + + P Sbjct: 78 DIPYTGSDTIASAVSIDKDFTKRIVKSLGINTPDWETFISEGDVLNTEWNK------FPA 131 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 VKP +GSSVG+ V S E+ + +V+VE+ ++GR++ +L +A Sbjct: 132 VVKPVREGSSVGLKIVESLEELKEYALDLLKKTERVMVEEFVEGRDMTVGIL---KGEAL 188 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 EI+ Y Y+ KY ++ +++ K++ I+++ + L AR+D Sbjct: 189 PVVEIIPKKGVYDYECKYTKGMSEYRILK---DEKLSKKLQEISLKISKFLSLKDFARID 245 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 +T E ++ E+NT+PG T +S+ P + G+ + LI+ +I Sbjct: 246 FRVTKEGKIFFLEVNTIPGMTELSLLPMAAKEKGMDFKKLISIII 290 >ref|NP_442228.1| (NC_000911) biotin carboxylase [Synechocystis sp. PCC 6803] pir||S74380 biotin carboxylase accC - Synechocystis sp. (strain PCC 6803) dbj|BAA10298.1| (D64001) biotin carboxylase [Synechocystis sp. PCC 6803] Length = 448 Score = 227 bits (578), Expect = 2e-58 Identities = 58/334 (17%), Positives = 115/334 (34%), Gaps = 25/334 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 + +R ++ L I + + + + H+ L + + P + Sbjct: 2 QFAKILIANRGEIALRIIHSCEELGIPTVAVHSTIDRHALHVQLANESVCIGPPPSNKSY 61 Query: 86 QLIDAQNGQPLPT-VDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 I L I P +G L E+ + + F+G A A DK Sbjct: 62 LNIPNIIAAALTRNATAIHPG-YGFLAENARFAEICADHQITFIGPSPEAITAMGDKSTA 120 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K+ ++ +G+ P + ++ +++G P+ +K G G+ V E+ + Sbjct: 121 KKTMQKSGVPCVPGSPGLI--ESEATALKIAAEIGYPVIIKATAGGGGRGMRLVQEEKDF 178 Query: 205 AIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A + V +E+ I+ R IE +L + + GE Sbjct: 179 LKLFHAAQGEAGAAFGNPGVYLEKFIEKPRHIEFQILADSHGNVVHLGER--DCSIQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E + P + K+ AV+A +++ G V+ + E+N Sbjct: 237 QKLLEE-----APSPFLTPHLRKKMGEAAVKAAKSINYVGAGTVEFLVDGNGNFYFMEMN 291 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 T + P +G DLI+ I +A+ Sbjct: 292 TRIQVEH----PVTEMITGY---DLISEQIRIAM 318 >ref|NP_539980.1| (NC_003317) BIOTIN CARBOXYLASE [Brucella melitensis] gb|AAL52244.1| (AE009546) BIOTIN CARBOXYLASE [Brucella melitensis] Length = 459 Score = 226 bits (576), Expect = 3e-58 Identities = 65/331 (19%), Positives = 118/331 (35%), Gaps = 26/331 (7%) Query: 28 VDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQL 87 + +R ++ L + + + + + D H+ L + + P + + Sbjct: 10 QKILIANRGEIALRVLRACKELGIKTVAVHSTADADAMHVRLADESVCIGPPPSRDSYLN 69 Query: 88 IDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKR 146 I + D I P +G L E+ +L ++ F+G DK KR Sbjct: 70 IHQIVAACEITGADAIHPG-YGFLSENAKFAEILEAHDITFIGPTASHIRIMGDKIEAKR 128 Query: 147 LLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAI 206 + G+ + P + A + ++G P+ +K + G G+ S E+ I Sbjct: 129 TAKRLGIPVVPGSDGGVTDEVEA--ARIAKEIGYPVIIKASAGGGGRGMKVARSAEELPI 186 Query: 207 AVDLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTK 259 A+ A D V +E+ ++ R IE V+G+ A GE K Sbjct: 187 ALATARSEAGAAFGDDAVYIEKYLEKPRHIEVQVMGDGAGNAVHLGER--DCSLQRRHQK 244 Query: 260 YIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTL 319 +E + A+ E +KI I A LG G ++ + E E+NT Sbjct: 245 VWEEGNS-----PALNAEAREKIGMICANACAELGYRGAGTIEFLY-EDGEFYFIEMNTR 298 Query: 320 PGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + P +G+ DL+ I +A Sbjct: 299 LQVEH----PVTEAITGI---DLVHEQIRVA 322 >gb|AAB88214.1| (U59234) biotin carboxylase [Synechococcus sp. PCC 7942] Length = 453 Score = 225 bits (575), Expect = 4e-58 Identities = 59/330 (17%), Positives = 112/330 (33%), Gaps = 25/330 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ L + + + + + + H+ L A + + + I Sbjct: 5 KILIANRGEIALRILRTCEELGIGTIAVHSTVDRNALHVQLADEAVCIGEAASSKSYLNI 64 Query: 89 DAQNGQPLPT-VDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 L I P +G L E+ + +L F+G + A DK K Sbjct: 65 PNIIAAALTRNASAIHPG-YGFLAENARFAEICADHHLTFIGPSPDSIRAMGDKSTAKET 123 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 ++ G+ P + S A+V +++G P+ +K G G+ V Sbjct: 124 MQRVGVPTIPGSDGLLTD--VDSAAKVAAEIGYPVMIKATAGGGGRGMRLVREPADLEKL 181 Query: 208 V------DLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A + + +E+ I R +E +L + GE K Sbjct: 182 FLAAQGEAEAAFGNPGLYLEKFIDRPRHVEFQILADAYGNVVHLGER--DCSIQRRHQKL 239 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E A++ ++ K+ AV+ Q +G G V+ + E+NT Sbjct: 240 LEE-----APSPALSADLRQKMGDAAVKVAQAIGYIGAGTVEFLVDATGNFYFMEMNTRI 294 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELA 350 + P +GL DLI I +A Sbjct: 295 QVEH----PVTEMITGL---DLIAEQIRIA 317 >ref|NP_359970.1| (NC_003103) D-alanine--D-alanine ligase [EC:6.3.2.4] [Rickettsia conorii] gb|AAL02871.1| (AE008598) D-alanine--D-alanine ligase [EC:6.3.2.4] [Rickettsia conorii] Length = 321 Score = 225 bits (575), Expect = 4e-58 Identities = 98/350 (28%), Positives = 167/350 (47%), Gaps = 56/350 (16%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + ++ GG SAE EVSL S++ + A+ + + V + + + + Sbjct: 22 KKHIALMAGGMSAEREVSLVSSEGVSKALIELGYRVTFIDMGADIAVRLQE--------- 72 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D++F +HGT GEDG L G+L + Sbjct: 73 ----------------------------------IKPDIVFNCLHGTYGEDGCLPGLLNI 98 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+ S VL+SA DK ++ +N+A I + +++ + P Sbjct: 99 MRIPYTHSGVLSSALAFDKIHSRIWFLTNNINMAEGIVVNKSDNIKNDPMK------RPY 152 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 +KP QGSS+GV + +E+ + A D F + +VI+EQ IKGRE++ AVL N +A Sbjct: 153 VIKPLTQGSSIGVEVIFAEDDFNFA-DYDFPYGDQVIIEQYIKGRELQVAVL---NGKAL 208 Query: 243 TCGEI-VLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 EI +L + FY Y+TKY + A + PA + + +K+ + + Y+T+ C G AR Sbjct: 209 GALEIKLLKNRFYDYETKYTEG-FADHLCPAPLPANLYEKLLIESEKIYKTMNCKGPARA 267 Query: 302 DVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + L + N++ EINT PG +S+ P++ +G+ +T+LI +I+ A Sbjct: 268 EFILEEQTNKLYALEINTHPGMMPLSIVPEIAAYAGINFTNLIEEIIKTA 317 >ref|NP_484982.1| (NC_003272) biotin carboxylase [Nostoc sp. PCC 7120] sp|Q06862|ACCC_ANASP BIOTIN CARBOXYLASE (A SUBUNIT OF ACETYL-COA CARBOXYLASE (ACC) pir||A53311 biotin carboxylase (EC 6.3.4.14) - Anabaena sp. (strain PCC 7120) gb|AAB51770.1| (L14862) biotin carboxylase [Anabaena sp.] dbj|BAB72896.1| (AP003584) biotin carboxylase [Nostoc sp. PCC 7120] Length = 447 Score = 225 bits (575), Expect = 4e-58 Identities = 57/333 (17%), Positives = 116/333 (34%), Gaps = 24/333 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ L + + ++ + + + H+ L A + + + I Sbjct: 5 KILIANRGEIALRILRACEEMGIATIAVHSTVDRNALHVQLADEAVCIGEPASAKSYLNI 64 Query: 89 DAQNGQPLPT-VDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 L I P +G L E+ + ++ F+G A DK K Sbjct: 65 PNIIAAALTRNASAIHPG-YGFLSENAKFAEICADHHIAFIGPTPEAIRLMGDKSTAKET 123 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 ++ AG+ P E+ +G P+ +K G G+ V S +++ Sbjct: 124 MQKAGVPTVPGSEGLVETEQEG--LELAKDIGYPVMIKATAGGGGRGMRLVRSPDEFVKL 181 Query: 208 V------DLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A + V +E+ I+ R IE +L ++ GE + K Sbjct: 182 FLAAQGEAGAAFGNAGVYIEKFIERPRHIEFQILADNYGNVIHLGER--DCSIQRRNQKL 239 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E A+ ++ +K+ AV+A Q + G ++ L + E+NT Sbjct: 240 LEE-----APSPALDSDLREKMGQAAVKAAQFINYTGAGTIEFLLDRSGQFYFMEMNTRI 294 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELALER 353 + P +G+ L+ ++ ER Sbjct: 295 QVEH----PVTEMVTGVDL--LVEQIRIAQGER 321 >ref|NP_076133.1| (NM_023644) methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [Mus musculus] gb|AAG50244.1|AF310338_1 (AF310338) 3-methylcrotonyl-CoA carboxylase alpha subunit [Mus musculus] Length = 717 Score = 222 bits (566), Expect = 4e-57 Identities = 58/339 (17%), Positives = 123/339 (36%), Gaps = 33/339 (9%) Query: 24 AKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKH 83 +I + +R ++ I + V + Y + H+ + A S+ P + Sbjct: 42 GGSITKVLIANRGEIACRVIRTAKKMGVQSVAVYSEADRNSMHVDMADEAYSIGPAPSQQ 101 Query: 84 EHQLID-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKD 142 + ++ I P +G L E+ + + + F+G A K Sbjct: 102 SYLAMEKIIQVAKSSAAQAIHPG-YGFLSENMEFAELCKQEGIIFIGPPSSAIRDMGIKS 160 Query: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEE 202 +K ++ AG+ + ++ + E K+G P+ +K G G+ V SE Sbjct: 161 TSKSIMAAAGVPVVEGY--HGKDQSDQCLREHAGKIGYPVMIKAVRGGGGKGMRIVRSER 218 Query: 203 QYAIAVDLAFEF------DHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYA 255 ++ ++ A D +++E+ + R +E V G+ + A Y Sbjct: 219 EFQEQLESARREAKKSFNDDAMLIEKFVDTPRHVEVQVFGDHHGNA-----------VYL 267 Query: 256 YDTKYIDEDGAKVVVP----AAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEV 311 ++ + + ++ I PE+ K+ AV+A + + G V+ + + Sbjct: 268 FERDCSVQRRHQKIIEEAPAPGINPEVRRKLGEAAVRAAKAVKYVGAGTVEFIMDSRHNF 327 Query: 312 VINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 E+NT + P +G TDL+ + +A Sbjct: 328 YFMEMNTRLQVEH----PVTEMITG---TDLVEWQLRIA 359 >dbj|BAB25253.1| (AK007782) putative [Mus musculus] Length = 717 Score = 222 bits (566), Expect = 5e-57 Identities = 58/339 (17%), Positives = 123/339 (36%), Gaps = 33/339 (9%) Query: 24 AKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKH 83 +I + +R ++ I + V + Y + H+ + A S+ P + Sbjct: 42 GGSITKVLIANRGEIACRVIRTAKKMGVQSVAVYSEADRNSMHVDMADEAYSIGPAPSQQ 101 Query: 84 EHQLID-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKD 142 + ++ I P +G L E+ + + + F+G A K Sbjct: 102 SYLAMEKIIQVAKSSAAQAIHPG-YGFLSENMEFAELCKQEGIIFIGPPSSAIRDMGIKS 160 Query: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEE 202 +K ++ AG+ + ++ + E K+G P+ +K G G+ V SE Sbjct: 161 TSKSIMAAAGVPVVEGY--HGKDQSDQCLREHAGKIGYPVMIKAVRGGGGKGMRIVRSER 218 Query: 203 QYAIAVDLAFEF------DHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYA 255 ++ ++ A D +++E+ + R +E V G+ + A Y Sbjct: 219 EFQEQLESARREAKKSFNDDAMLIEKFVDTPRHVEVQVFGDHHGNA-----------VYL 267 Query: 256 YDTKYIDEDGAKVVVP----AAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEV 311 ++ + + ++ I PE+ K+ AV+A + + G V+ + + Sbjct: 268 FERDCSVQRRHQKIIEEAPAPGINPEVRRKLGEAAVRAAKAVKYVGAGTVEFIMDSRHNF 327 Query: 312 VINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 E+NT + P +G TDL+ + +A Sbjct: 328 YFMEMNTRLQVEH----PVTEMITG---TDLVEWQLRIA 359 >ref|NP_232019.1| (NC_002505) carbamoyl-phosphate synthase, large subunit [Vibrio cholerae] pir||D82083 carbamoyl-phosphate synthase, large chain VC2389 [imported] - Vibrio cholerae (group O1 strain N16961) gb|AAF95532.1| (AE004309) carbamoyl-phosphate synthase, large subunit [Vibrio cholerae] Length = 1076 Score = 222 bits (565), Expect = 7e-57 Identities = 60/363 (16%), Positives = 128/363 (34%), Gaps = 53/363 (14%) Query: 2 EKLRVGIVFGGKSA-----EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 +K ++ ++ GG + E + A A+ + ++ +++ + + D S Sbjct: 557 DKDKIMVLGGGPNRIGQGIEFDYCCVHA---ALALREDGYETIMVNCNPETVSTDYDTS- 612 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + LA V + +I GQ L Sbjct: 613 ------DRLYFEPVTLEDVLAIVRVEKPKGVIVQYGGQTPLK-----------------L 649 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L A +P +G+ A D++ ++ ++ GL T+T + E+ Sbjct: 650 ARALEAAGVPVIGTSPDAIDRAEDRERFQQAVQRLGLKQPDNATVTAIEQAIEKSREI-- 707 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGI-KGREIECAV 233 G PL V+P+ + V E+ + A + V++++ + E++ Sbjct: 708 --GFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDDATEVDVDA 765 Query: 234 LGNDN-PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + + E + + ++ D A + ++ EI DK+R + Sbjct: 766 ICDGERVVIGGIMEHIEQAGVHS-------GDSACSLPAYTLSQEIQDKMREQVEKLAFE 818 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITR-LIELAL 351 LG G+ + + +NEV + E+N T P + +A+G + R ++ L Sbjct: 819 LGVRGLMNIQFAV-KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAARVMVGQTL 873 Query: 352 ERH 354 E+ Sbjct: 874 EQQ 876 Score = 161 bits (409), Expect = 8e-39 Identities = 49/344 (14%), Positives = 111/344 (32%), Gaps = 47/344 (13%) Query: 12 GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRP 71 G++ E + S A+ + + V+L+ +PA I P Sbjct: 21 GQACEFDYS---GAQACKALREEGYRVILV-------------------NSNPATIMTDP 58 Query: 72 SATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ----GMLRVANLPF 127 + H + D I P + G + +L G+L + Sbjct: 59 EMADATYIEPIHW---EVVRKIIEKERPDAILPTMGGQTALNCALALEKHGVLAEFGVEM 115 Query: 128 VGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187 +G+ A D+ + ++ GL + +V +G P ++P+ Sbjct: 116 IGATADAIDKAEDRSRFDKAMKSIGLECPR----ADTAKSMEEAYKVLDMVGFPCIIRPS 171 Query: 188 NQGSSVGVSKVTSEEQYAIAVD--LAFEFDHKVIVEQGIKG-REIECAVLGNDNPQASTC 244 G + E++ L +++++++ + G +E E V+ + N Sbjct: 172 FTMGGSGGGIAYNREEFEEICTRGLDLSPTNELLIDESLIGWKEYEMEVVRDKNDNCIIV 231 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA-GMARVDV 303 I + + D V + + +R ++ + +G G + V Sbjct: 232 CAIEN----FDPMGIHT-GDSITVAPAQTLTDKEYQIMRNASLAVLREIGVETGGSNVQF 286 Query: 304 FLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 + + +VI E+N ++ +A+G + +L Sbjct: 287 GINPKDGRMVIIEMNPRVSRSSA----LASKATGFPIAKVAAKL 326 >ref|NP_220634.1| (NC_000963) D-ALANINE--D-ALANINE LIGASE (ddlB) [Rickettsia prowazekii] sp|Q9ZDS6|DDL_RICPR D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||E71679 D-alanine--D-alanine ligase (EC 6.3.2.4) B - Rickettsia prowazekii emb|CAA14711.1| (AJ235271) D-ALANINE--D-ALANINE LIGASE (ddlB) [Rickettsia prowazekii] Length = 321 Score = 221 bits (564), Expect = 8e-57 Identities = 97/350 (27%), Positives = 168/350 (47%), Gaps = 56/350 (16%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +V GG SAE EVSL S+ + A+ + + V + + + + Sbjct: 22 KKHIALVAGGMSAEREVSLVSSAGVSKALIELGYKVTFVDMGADIAVKLQE--------- 72 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D++F +HGT GEDG L G+L + Sbjct: 73 ----------------------------------INPDIVFNCLHGTYGEDGCLPGLLNI 98 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+ S +L+SA DK + + +NIA I +++++ N + P Sbjct: 99 MRIPYTHSGLLSSALAFDKIHFRSCVLKNNINIADSIVVSKSDHINTDPMK------RPY 152 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 +KP QGSS+GV + E+ + D F + +I+EQ I+G+E++ A+L N +A Sbjct: 153 VIKPLKQGSSIGVEVIFEEDDF-NFTDYDFPYGEDIIIEQYIQGQELQVALL---NGKAL 208 Query: 243 TCGEI-VLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 EI +L + FY Y+TKY +E A+ V PA + + K+ + + Y+T+ C G R Sbjct: 209 GVLEIKLLKNRFYDYETKY-NEGFAEHVCPAPLPANLYKKLLIESEKIYKTINCKGPVRA 267 Query: 302 DVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + L + N++ + EINT PG T +S+ P++ +G+ +T+LI +I++A Sbjct: 268 EFILEEQTNKLYVLEINTHPGMTPLSIVPEIAAYAGINFTNLIEEIIKMA 317 >ref|NP_243491.1| (NC_002570) pyruvate carboxylase [Bacillus halodurans] dbj|BAB06344.1| (AP001516) pyruvate carboxylase [Bacillus halodurans] Length = 1150 Score = 220 bits (560), Expect = 2e-56 Identities = 54/331 (16%), Positives = 103/331 (30%), Gaps = 33/331 (9%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ---VPG 81 KNI + +R + + + I + D A+ + L P Sbjct: 5 KNIKKVLVANRGE-IAIRIFRACTELHIRTVAIYSKEDTGAYHRYKADEAYLVGEGKKPI 63 Query: 82 KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDK 141 + + VD I P +G L E+ + F+G ++ DK Sbjct: 64 EAYLDIEGIIEIAKRHGVDAIHPG-YGFLSENIEFAKRCHEEGIIFIGPELEHLVMFGDK 122 Query: 142 DVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSE 201 + A L + P + K G P +K A G G+ V SE Sbjct: 123 VQAREQAIKANLPVIPGSDGPVS--SLEDVKAFADKHGYPFIIKAALGGGGRGMRIVRSE 180 Query: 202 EQYAIAVDLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFY 254 + + A + +V VE+ I+ + IE +L + + + Sbjct: 181 NDVQESYERAKSEAKAAFGNDEVYVEKFIENPKHIEVQILADKHGNTL-----------H 229 Query: 255 AYDTKYIDEDGAKVVVPAA----IAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENE 310 Y+ + + VV A ++ ++ ++I AVQ + + V+ + E Sbjct: 230 LYERDCSVQRRHQKVVEVAPSVSLSEDVRERICQAAVQLAENVNYVNAGTVEFLVDREGN 289 Query: 311 VVINEINTLPGFTNISMYPKLWQASGLGYTD 341 E+N + +G+ Sbjct: 290 FYFIEVNPRIQVEHT----ITEMVTGIDIVQ 316 >ref|NP_389369.1| (NC_000964) pyruvate carboxylase [Bacillus subtilis] pir||F69685 pyruvate carboxylase (EC 6.4.1.1) pycA [similarity] - Bacillus subtilis emb|CAB13359.1| (Z99111) pyruvate carboxylase [Bacillus subtilis] Length = 1148 Score = 220 bits (560), Expect = 2e-56 Identities = 56/345 (16%), Positives = 107/345 (30%), Gaps = 27/345 (7%) Query: 23 SAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ---V 79 S ++I + +R + + + I + D ++ + L Sbjct: 2 SQQSIQKVLVANRGE-IAIRIFRACTELNIRTVAVYSKEDSGSYHRYKADEAYLVGEGKK 60 Query: 80 PGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACM 139 P + + VD I P +G L E+ + F+G Sbjct: 61 PIDAYLDIEGIIDIAKRNKVDAIHPG-YGFLSENIHFARRCEEEGIVFIGPKSEHLDMFG 119 Query: 140 DKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVT 199 DK + AG+ + P + + G P+ +K + G G+ V Sbjct: 120 DKVKAREQAEKAGIPVIPGSDGP--AETLEAVEQFGQANGYPIIIKASLGGGGRGMRIVR 177 Query: 200 SEEQYAIAVDLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSD 252 SE + A + A + +V VE+ I+ + IE V+G+ E Sbjct: 178 SESEVKEAYERAKSEAKAAFGNDEVYVEKLIENPKHIEVQVIGDKQGNVVHLFER--DCS 235 Query: 253 FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVV 312 K +V +++PE+ D+I AV + + V+ + NE Sbjct: 236 VQRRHQKV-----IEVAPSVSLSPELRDQICEAAVALAKNVNYINAGTVEFLV-ANNEFY 289 Query: 313 INEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 E+N + +G+ L+ H+ Sbjct: 290 FIEVNPRVQVEHT----ITEMITGVDIVQT-QILVAQGHSLHSKK 329 >ref|NP_539717.1| (NC_003317) PROPIONYL-COA CARBOXYLASE ALPHA CHAIN, MITOCHONDRIAL [Brucella melitensis] gb|AAL51981.1| (AE009521) PROPIONYL-COA CARBOXYLASE ALPHA CHAIN, MITOCHONDRIAL [Brucella melitensis] Length = 667 Score = 219 bits (558), Expect = 4e-56 Identities = 62/332 (18%), Positives = 121/332 (35%), Gaps = 25/332 (7%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQ 86 I + +R ++ I + ++ + Y + H+ + A + P + Sbjct: 2 IKKILIANRGEIACRVIKSAKKKGIATVAVYSDADRNALHVKMADEAVHIGPAPSNQSYI 61 Query: 87 LIDAQNGQPLP-TVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 +ID D + P +G L E+ L+ AN+ F+G V A A DK +K Sbjct: 62 VIDKILAAIKEIGADAVHPG-YGFLSENPRFAEALKAANVTFIGPPVNAIDAMGDKITSK 120 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 +L +AG++ P + + +G P+ +K + G G+ ++E+ Sbjct: 121 KLAAEAGVSTVPGHMGLIEDADEAV--RIAGSIGYPVMIKASAGGGGKGMRIAWNDEEAR 178 Query: 206 IAVDLAFE------FDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 L+ D ++ +E+ + + R IE VLG+ + GE + Sbjct: 179 EGFQLSRNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDQHGNVVYLGER--ECSIQRRNQ 236 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K I+E + + AV + +G V+ + E+NT Sbjct: 237 KVIEE-----APSPFLDEATRKAMGEQAVALAKAVGYYSAGTVEFIVDGNRNFYFLEMNT 291 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + P +G+ DL+ +I +A Sbjct: 292 RLQVEH----PVTELITGI---DLVEEMIRVA 316 >gb|AAF80469.1|AF163150_1 (AF163150) acetyl-CoA carboxylase [Glycine max] Length = 539 Score = 219 bits (558), Expect = 4e-56 Identities = 59/330 (17%), Positives = 115/330 (33%), Gaps = 23/330 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ + I + + + Y D H+ L A + + P + LI Sbjct: 74 KILIANRGEIAVRVIRTAHELGIPCVAVYSTIDKDALHVKLADEAVCIGEAPSSQSYLLI 133 Query: 89 DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLL 148 + + +G L E+ M R + F+G + + DK + + Sbjct: 134 PNVLSAAISRRCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVMGDKATARETM 193 Query: 149 RDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV 208 + AG+ P + + +++G P+ +K G G+ + + Sbjct: 194 KKAGVPTVPGSDGLL--QSTEEAIRLANEIGFPVMIKATAGGGGRGMRLAKEPAELVKFL 251 Query: 209 DLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYI 261 A + V +E+ I+ R IE VL + GE + K + Sbjct: 252 QQAKSEAAAAFGNDGVYLEKYIQNPRHIEFQVLADKYGNVVHFGER--DCSIQRRNQKLL 309 Query: 262 DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG 321 +E A+ PE+ + AV A ++G G+ V+ L E+NT Sbjct: 310 EE-----APSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQ 364 Query: 322 FTNISMYPKLWQASGLGYTDLITRLIELAL 351 + ++ + TDLI I +A+ Sbjct: 365 VEH--PVTEM-----ISSTDLIEEQIRVAM 387 >ref|NP_534077.1| (NC_003305) propionyl-coenzyme A carboxylase, alpha polypeptide [Agrobacterium tumefaciens str. C58 (U. Washington)] gb|AAL44393.1| (AE009288) propionyl-coenzyme A carboxylase, alpha polypeptide [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 677 Score = 218 bits (557), Expect = 5e-56 Identities = 62/334 (18%), Positives = 123/334 (36%), Gaps = 25/334 (7%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHE 84 + I + +R ++ I + ++ + Y + H+ + A + P Sbjct: 10 RMIKKILIANRGEIACRVIKTAKKMGIATVAVYSDADANALHVKMADEAVHIGPAPSSQS 69 Query: 85 HQLID-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + +ID D + P +G L E+ + L A + F+G V A A DK Sbjct: 70 YIVIDKILEAIQKTGADAVHPG-YGFLSENAAFAQALEKAGVVFIGPPVGAIEAMGDKIT 128 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 +K+L AG++ P + ++ S++G P+ +K + G G+ +E + Sbjct: 129 SKKLAAKAGVSTVPGHMGLIEDADEAV--KIASQIGYPVMIKASAGGGGKGMRIAFNEAE 186 Query: 204 YAIAVDLAFE------FDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 + D ++ +E+ + + R IE VLG+ + GE Sbjct: 187 AREGFQSSKNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDKHGTILYLGER--ECSIQRR 244 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEI 316 + K I+E + + AV + +G V+ + E E+ Sbjct: 245 NQKVIEE-----APSPFLDEATRHAMGEQAVALARAVGYHSAGTVEFIVDGERNFYFLEM 299 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 NT + P +G+ DL+ ++I +A Sbjct: 300 NTRLQVEH----PVTELVTGI---DLVEQMIRVA 326 >pir||T07093 acetyl-CoA carboxylase (EC 6.4.1.2) biotin carboxylase chain precursor - soybean gb|AAC02267.1| (AF007100) biotin carboxylase precursor [Glycine max] gb|AAF80468.1|AF163149_1 (AF163149) acetyl-CoA carboxylase [Glycine max] Length = 539 Score = 218 bits (556), Expect = 6e-56 Identities = 58/330 (17%), Positives = 117/330 (34%), Gaps = 23/330 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ + I + + + Y D H+ L A + + P + LI Sbjct: 74 KILIANRGEIAVRVIRTAHELGIPCVAVYSTIDKDALHVKLADEAVCIGEAPSSQSYLLI 133 Query: 89 DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLL 148 + + +G L E+ M R + F+G + + DK + + Sbjct: 134 PNVLSAAISRRCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVMGDKATARETM 193 Query: 149 RDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV 208 + AG+ P + + +++G P+ +K G G+ +++ + Sbjct: 194 KKAGVPTVPGSDGLL--QSTEEAIRLANEIGFPVMIKATAGGGGRGMRLAKEPDEFVKLL 251 Query: 209 DLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYI 261 A + V +E+ I+ R IE VL + GE + K + Sbjct: 252 QQAKSEAAAAFGNDGVYLEKYIQNPRHIEFQVLADKYGNVVHFGER--DCSIQRRNQKLL 309 Query: 262 DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG 321 +E A+ PE+ + AV A ++G G+ ++ L E+NT Sbjct: 310 EE-----APSPALTPELRKAMGDAAVAAAASIGYIGVGTIEFLLDERGSFYFMEMNTRIQ 364 Query: 322 FTNISMYPKLWQASGLGYTDLITRLIELAL 351 + ++ + TDLI I +A+ Sbjct: 365 VEH--PVTEM-----ISSTDLIEEQIRVAM 387 >pir||T06279 acetyl-CoA carboxylase (EC 6.4.1.2), biotin carboxylase chain precursor - soybean gb|AAC23573.1| (AF068249) biotin carboxylase precursor [Glycine max] Length = 539 Score = 218 bits (556), Expect = 7e-56 Identities = 59/330 (17%), Positives = 116/330 (34%), Gaps = 23/330 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ + I + + + Y D H+ L A + + P + LI Sbjct: 74 KILIANRGEIAVRVIRTAHELGIPCVAVYSTIDKDALHVKLADEAVCIGEAPSSQSYLLI 133 Query: 89 DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLL 148 + + +G L E+ M R + F+G + + DK + + Sbjct: 134 PNVLSAAISRRCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVMGDKATARETM 193 Query: 149 RDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV 208 + AG+ P + + +++G P+ +K G G+ ++ + Sbjct: 194 KKAGVPTVPGSDGLL--QSTEEAIRLANEIGFPVMIKATAGGGGRGMRLAKEPAEFVKFL 251 Query: 209 DLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYI 261 A + V +E+ I+ R IE VL + GE + K + Sbjct: 252 QQAKSEAAAAFGNDGVYLEKYIQNPRHIEFQVLADKYGNVVHFGER--DCSIQRRNQKLL 309 Query: 262 DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG 321 +E A+ PE+ + AV A ++G G+ V+ L E+NT Sbjct: 310 EE-----APSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQ 364 Query: 322 FTNISMYPKLWQASGLGYTDLITRLIELAL 351 + ++ + TDLI I +A+ Sbjct: 365 VEH--PVTEM-----ISSTDLIEEQIRVAM 387 >ref|NP_102052.1| (NC_002678) biotin carboxylase [Mesorhizobium loti] dbj|BAB47838.1| (AP002994) biotin carboxylase [Mesorhizobium loti] Length = 447 Score = 218 bits (556), Expect = 7e-56 Identities = 61/331 (18%), Positives = 114/331 (34%), Gaps = 26/331 (7%) Query: 28 VDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQL 87 + +R ++ L + + + + D H+ L + + P + + Sbjct: 3 QKILIANRGEIALRVLRACKELGIQTVVVHSTADADAMHVRLADESVCIGPPPSRDSYLN 62 Query: 88 IDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKR 146 I + D + P +G L E+ +L N+ F+G DK KR Sbjct: 63 IHQIVAACEITGADAVHPG-YGFLSENAKFADILAAHNITFIGPSGDHIRIMGDKIEAKR 121 Query: 147 LLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAI 206 + G+ + P + +++G P+ +K + G G+ SE + Sbjct: 122 TAKRLGIPVVPGSDGAVTEEKEA--KRIAAEIGYPVIIKASAGGGGRGMKVAHSEADLEV 179 Query: 207 AVDLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTK 259 A+ A D V +E+ ++ R IE V G+ + GE K Sbjct: 180 ALQTARSEAGAAFGDDAVYIEKYLQKPRHIEVQVFGDGFGRGVHFGER--DCSLQRRHQK 237 Query: 260 YIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTL 319 +E + A+ E +I I +A LG +G ++ E E+NT Sbjct: 238 VWEEANS-----PALNAEERSRIGGICAKAIADLGYSGAGTIEFLY-ENGEFYFIEMNTR 291 Query: 320 PGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + P +G+ DL+ I +A Sbjct: 292 LQVEH----PVTEAITGI---DLVHEQIRVA 315 >ref|NP_539499.1| (NC_003317) D-ALANINE--D-ALANINE LIGASE [Brucella melitensis] gb|AAL51763.1| (AE009500) D-ALANINE--D-ALANINE LIGASE [Brucella melitensis] Length = 315 Score = 218 bits (556), Expect = 7e-56 Identities = 102/356 (28%), Positives = 164/356 (45%), Gaps = 58/356 (16%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M V ++ GG S+E VSL S +++ + V + +D+ + + Sbjct: 8 MTGKHVAVLMGGFSSERSVSLSSGVACATTLEECGYRVTRIDVDRNVASILVE------- 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 DV+F +HG GEDG++QG+L Sbjct: 61 ------------------------------------LKPDVVFNALHGPFGEDGAIQGVL 84 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 +P+ S VLASA MDKD K++ AG+ +AP + R + + + Sbjct: 85 EYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPSRLMNRFDIGSQHPMK------P 138 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAV--DLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 P VKP +GSS GV V ++ + V +++ +V+VE I GRE+ CAV+G+ Sbjct: 139 PYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEGYIAGRELTCAVMGDRA 198 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 + FY YD+KY+ + V PA I P I KI+ +A+ A++ +GC G+ Sbjct: 199 MDVCEIMPVGY--QFYDYDSKYV-AGASTHVCPAKILPNIYQKIQTMALTAHRAIGCRGV 255 Query: 299 ARVDVFLT----PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 +R D E EVV EINT PG T S+ P + +A+G+ + +L++ ++E A Sbjct: 256 SRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAELLSWMVEDA 311 >ref|NP_357031.1| (NC_003063) AGR_L_580GMp [Agrobacterium tumefaciens] [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAK89816.1| (AE008324) AGR_L_580GMp [Agrobacterium tumefaciens str. C58 (Cereon)] Length = 667 Score = 218 bits (555), Expect = 9e-56 Identities = 62/332 (18%), Positives = 122/332 (36%), Gaps = 25/332 (7%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQ 86 I + +R ++ I + ++ + Y + H+ + A + P + Sbjct: 2 IKKILIANRGEIACRVIKTAKKMGIATVAVYSDADANALHVKMADEAVHIGPAPSSQSYI 61 Query: 87 LID-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 +ID D + P +G L E+ + L A + F+G V A A DK +K Sbjct: 62 VIDKILEAIQKTGADAVHPG-YGFLSENAAFAQALEKAGVVFIGPPVGAIEAMGDKITSK 120 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 +L AG++ P + ++ S++G P+ +K + G G+ +E + Sbjct: 121 KLAAKAGVSTVPGHMGLIEDADEAV--KIASQIGYPVMIKASAGGGGKGMRIAFNEAEAR 178 Query: 206 IAVDLAFE------FDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 + D ++ +E+ + + R IE VLG+ + GE + Sbjct: 179 EGFQSSKNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDKHGTILYLGER--ECSIQRRNQ 236 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K I+E + + AV + +G V+ + E E+NT Sbjct: 237 KVIEE-----APSPFLDEATRHAMGEQAVALARAVGYHSAGTVEFIVDGERNFYFLEMNT 291 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + P +G+ DL+ ++I +A Sbjct: 292 RLQVEH----PVTELVTGI---DLVEQMIRVA 316 >pir||T02431 acetyl-CoA carboxylase (EC 6.4.1.2), biotin carboxylase - common tobacco gb|AAC41659.1| (L38260) biotin carboxylase subunit [Nicotiana tabacum] prf||2118337A Ac-CoA carboxylase:SUBUNIT=biotin carboxylase [Nicotiana tabacum] Length = 536 Score = 218 bits (555), Expect = 9e-56 Identities = 58/346 (16%), Positives = 123/346 (34%), Gaps = 23/346 (6%) Query: 13 KSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPS 72 KS+ +L + + +R ++ + I + + + Y D H+ L Sbjct: 57 KSSTRGGALAATCRAEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADE 116 Query: 73 ATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDV 132 + + + P + +I + + +G L E+ M R + F+G + Sbjct: 117 SVCIGEAPSNQSYLVIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNP 176 Query: 133 LASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSS 192 + DK + +++AG+ P + + ++G P+ +K G Sbjct: 177 DSIRVMGDKSTARDTMKNAGVPTVPGSDGLL--QSTEEGVRLAEEIGYPVMIKATAGGGG 234 Query: 193 VGVSKVTSEEQYAIAVDLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCG 245 G+ +++ + A + V +E+ ++ R IE VL + G Sbjct: 235 RGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFG 294 Query: 246 EIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFL 305 E + K ++E A+ PE+ + + AV A ++G G+ V+ L Sbjct: 295 ER--DCSIQRRNQKLLEE-----APSPALTPELRNAMGDAAVAAAASIGYIGVGTVEFLL 347 Query: 306 TPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 E+NT + ++ + DLI I +A+ Sbjct: 348 DERGSFYFMEMNTRIQVEH--PVTEM-----ISSVDLIEEQIRVAM 386 >ref|NP_421346.1| (NC_002696) D-alanine--D-alanine ligase B [Caulobacter crescentus] gb|AAK24514.1| (AE005922) D-alanine--D-alanine ligase B [Caulobacter crescentus] Length = 324 Score = 215 bits (548), Expect = 5e-55 Identities = 96/356 (26%), Positives = 148/356 (40%), Gaps = 54/356 (15%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 + ++ GG S+E +VSL S +A+++ V + + Sbjct: 15 HIAVLLGGPSSERKVSLVSGAACAEALERLGAKVSRIDPGPDVAQVL------------- 61 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 D++F +HG GEDG +QG+L Sbjct: 62 ------------------------------AATKPDMVFNALHGEWGEDGCVQGVLETLK 91 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 LP+ S VLASA MDK K +L AG+ + R + L P V Sbjct: 92 LPYTHSGVLASALAMDKAKAKAVLAAAGVTVPGGGLFNRHDVARDHV------LQPPYVV 145 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLA--FEFDHKVIVEQGIKGREIECAVLGNDNP-QA 241 KP +GSSVGV + A + F +V+VE I+G E+ AVLG N +A Sbjct: 146 KPNAEGSSVGVFIIKEGANRPPEEVGAPSWTFGEEVMVEPYIQGMELAVAVLGESNGPRA 205 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 +I ++ FY Y+ KY + V+PA I + D+ +A A+ LGC G+ R Sbjct: 206 LAVTDIRASTGFYDYEAKYSEGGSI-HVLPAPIPNAVRDRAMRMAELAHTALGCRGVTRS 264 Query: 302 DVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 D + +V+ E+NT PG T S+ P+ G+ + L+ ++E A R +A Sbjct: 265 DFRYDDINDLLVLLEVNTQPGMTPTSLAPEQADHVGIPFDQLVLWIVEDAYARCSA 320 >ref|NP_298089.1| (NC_002488) D-alanine--D-alanine ligase B [Xylella fastidiosa 9a5c] pir||F82763 D-alanine--D-alanine ligase B XF0799 [imported] - Xylella fastidiosa (strain 9a5c) gb|AAF83609.1|AE003919_20 (AE003919) D-alanine--D-alanine ligase B [Xylella fastidiosa 9a5c] Length = 320 Score = 215 bits (547), Expect = 7e-55 Identities = 104/350 (29%), Positives = 164/350 (46%), Gaps = 52/350 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 RV ++ GG SAE EVSL S +N+++ + D + G ++ A Sbjct: 20 RVAVLLGGTSAEREVSLLSGRNVLEVLRVRGVDAQSV----DGVPALAQALVER------ 69 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTL--GEDGSLQGMLRV 122 D +F ++HG GEDG +QG+++ Sbjct: 70 ---------------------------------RFDRVFNVLHGHNGGGEDGVVQGLMQA 96 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+ GSDVL SA MDK TK++ GL + +L+ V LG P+ Sbjct: 97 FGVPYTGSDVLGSALSMDKVRTKQVWLALGLPTPRYASLSVCATAVEVRQAV-EMLGFPV 155 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 +KPA +GSSVGVS+V + E AV LA ++ ++++EQ I+G E+ ++L + A Sbjct: 156 IIKPAKEGSSVGVSRVFALEHLEEAVALAARYEGELLMEQLIEGDELTVSIL---DEMAL 212 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 IV +Y Y+ KY+ ED + V P + +I +A+ A++ +GC G RVD Sbjct: 213 PSIRIVPQGQWYDYNAKYLAED-TQYVCP-GLDDVAEAEIARLALAAFRAVGCRGWGRVD 270 Query: 303 -VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 + + E+NT PG T S+ PK G+G+ DL+ R++E L Sbjct: 271 VMRERGSGRFFLLEVNTAPGMTTHSLVPKAASQLGMGFDDLVWRILEQTL 320 >ref|NP_354336.1| (NC_003062) AGR_C_2451p [Agrobacterium tumefaciens] [Agrobacterium tumefaciens str. C58 (Cereon)] ref|NP_532020.1| (NC_003304) acetyl-CoA carboxylase, biotin carboxylase [Agrobacterium tumefaciens str. C58 (U. Washington)] gb|AAK87121.1| (AE008059) AGR_C_2451p [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAL42336.1| (AE009094) acetyl-CoA carboxylase, biotin carboxylase [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 448 Score = 215 bits (547), Expect = 8e-55 Identities = 61/332 (18%), Positives = 113/332 (33%), Gaps = 27/332 (8%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQ 86 + + +R ++ L + + + + + D H+ L + + P + + Sbjct: 2 VSKILIANRGEIALRVLRAAKELGIPTVAVHSTADADAMHVRLADESVCIGPPPSRDSYL 61 Query: 87 LIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 I + D + P +G L E+ +L + F+G DK K Sbjct: 62 NIHQIVAACEITGADAVHPG-YGFLSENAKFADILDAHGITFIGPTAEHIRIMGDKITAK 120 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 + ++ G+ + P + E+ +G P+ +K G G+ +E Sbjct: 121 QTAQELGIPVVPGSDGEVKPEN---ALEIARTIGFPVLIKATAGGGGRGMKVAKTEADLE 177 Query: 206 IAVDLAFE------FDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 AV A + V +E+ + K R IE V G+ A GE Sbjct: 178 DAVATARSEAAAAFGNDAVYMEKYLGKPRHIEVQVFGDGEGNAVHLGER--DCSLQRRHQ 235 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K ++E + A+ E KI I A + L G ++ E E+NT Sbjct: 236 KVLEEANS-----PALTVEQRMKIGEICADAMRKLKYRGAGTIEFLY-ENGEFYFIEMNT 289 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + P +G+ DL+ I +A Sbjct: 290 RLQVEH----PVTEAITGM---DLVQEQIRVA 314 >ref|NP_385425.1| (NC_003047) PROBABLE BIOTIN CARBOXYLASE PROTEIN [Sinorhizobium meliloti] emb|CAC45898.1| (AL591786) PROBABLE BIOTIN CARBOXYLASE PROTEIN [Sinorhizobium meliloti] Length = 449 Score = 213 bits (543), Expect = 2e-54 Identities = 62/332 (18%), Positives = 116/332 (34%), Gaps = 27/332 (8%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQ 86 I + +R ++ L + + ++ + + D H+ L + + P + + Sbjct: 4 ISKILIANRGEIALRVLRACKELGIATVAVHSTADSDAMHVRLADESVCIGPPPSRESYL 63 Query: 87 LIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 I + D + P +G L E+ +L + F+G DK K Sbjct: 64 NIHQIVAACEITGADAVHPG-YGFLSENAKFADILDAHGITFIGPTAEHIRLMGDKITAK 122 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 + + G+ + P + E+ ++G P+ +K G G+ +EE+ Sbjct: 123 KTAEELGIPVVPGSDG---EVRPENALEIARQIGFPVLIKATAGGGGRGMKVARTEEELE 179 Query: 206 IAVDLAFE------FDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 AV A + V +E+ + K R IE V+G+ A GE Sbjct: 180 NAVATARSEAAAAFGNDAVYMEKFLGKPRHIEIQVVGDGEGNAIHLGER--DCSLQRRHQ 237 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K +E + A+ E KI + A + L G ++ E E+NT Sbjct: 238 KVWEEANS-----PALNVEQRMKIGQVCADAMKKLKYRGAGTIEFLY-ENGEFYFIEMNT 291 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + P +G+ DL+ I +A Sbjct: 292 RLQVEH----PITEAITGI---DLVHEQIRVA 316 >ref|NP_437988.1| (NC_003078) putative propionyl-CoA carboxylase alpha chain protein [Sinorhizobium meliloti] emb|CAC49848.1| (AL603647) putative propionyl-CoA carboxylase alpha chain protein [Sinorhizobium meliloti] Length = 670 Score = 213 bits (543), Expect = 2e-54 Identities = 60/330 (18%), Positives = 118/330 (35%), Gaps = 25/330 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ I + + Y D H+ + A + P + +I Sbjct: 7 KILIANRGEIACRVIRTTKALGIPTVAVYSDADRDAMHVRMADEAVHIGPSPSSQSYIVI 66 Query: 89 D-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + D + P +G L E+ + L + F+G V A A DK +K+L Sbjct: 67 ENILAAIRRTGADAVHPG-YGFLSENAAFAEALEKDGVTFIGPPVRAIEAMGDKITSKKL 125 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 +AG+ P + A + +++G P+ +K + G G+ +E + Sbjct: 126 AAEAGVFTVPGHMGLIEDADEA--ARIAAEIGFPVMIKASAGGGGKGMRIAWNEREAREG 183 Query: 208 VDLAFE------FDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 + D ++ +E+ + + R IE VLG+ + GE + K Sbjct: 184 FQSSRNEAKSSFGDDRIFIEKFVTEPRHIEIQVLGDKHGNILYLGER--ECSIQRRNQKV 241 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 I+E + + + AV + +G V+ + E+NT Sbjct: 242 IEE-----APSPFLDEKTRRAMGEQAVALAKAVGYHSAGTVEFIVDAGRNFYFLEMNTRL 296 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELA 350 + P +GL DL+ ++I +A Sbjct: 297 QVEH----PVTELVTGL---DLVEQMIRVA 319 >ref|NP_519642.1| (NC_003295) PROBABLE CARBAMOYL-PHOSPHATE SYNTHASE (LARGE CHAIN) PROTEIN [Ralstonia solanacearum] emb|CAD15223.1| (AL646065) PROBABLE CARBAMOYL-PHOSPHATE SYNTHASE (LARGE CHAIN) PROTEIN [Ralstonia solanacearum] Length = 1081 Score = 212 bits (540), Expect = 5e-54 Identities = 56/359 (15%), Positives = 121/359 (33%), Gaps = 54/359 (15%) Query: 2 EKLRVGIVFGGKSA-----EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 E+ ++ ++ GG + E + A A+ + ++ +++ + + D S Sbjct: 562 ERKKIMVLGGGPNRIGQGIEFDYCCVHA---ALALREDGYETIMVNCNPETVSTDYDTS- 617 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L V + +I GQ L D Sbjct: 618 ------DRLYFEPVTLEDVLEIVDKEKPVGVIVQYGGQTPLK-----------LALD--- 657 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L +P +G+ A D++ ++LL D GL P R R ++ Sbjct: 658 ---LEANGVPIIGTTPDMIDAAEDRERFQKLLHDLGLRQPP----NRTARAEDEALKLAD 710 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEF--DHKVIVEQGI-KGREIECAV 233 ++G PL V+P+ + V + A + D V++++ + E + Sbjct: 711 EIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDC 770 Query: 234 LGNDN-PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 L + E + + ++ D A + P +++ D+++ + Sbjct: 771 LSDGKRVFIGGVMEHIEQAGVHS-------GDSACSLPPYSLSQATVDELKRQTAAMARA 823 Query: 293 LGCAGMARVDVFLTPENE---VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 L G+ V + + V + E+N T P + +A+G+ + R + Sbjct: 824 LNVIGLMNVQFAIQQKGGEDIVYVLEVNPRASRT----VPYVSKATGISLAKVAARCMA 878 Score = 169 bits (429), Expect = 4e-41 Identities = 52/349 (14%), Positives = 113/349 (31%), Gaps = 50/349 (14%) Query: 12 GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRP 71 G++ E + S A+ + F VVL+ +PA I P Sbjct: 21 GQACEFDYS---GAQACKALREEGFKVVLV-------------------NSNPATIMTDP 58 Query: 72 SATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL----QGMLRVANLPF 127 S + + + D I P + G + +L G+L N+ Sbjct: 59 STADVTYI---EPITWEVVERIIAKERPDAILPTMGGQTALNCALDLHRHGVLEKYNVEL 115 Query: 128 VGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK---LGLPLFV 184 +G+ A D+ K + GL A A++ + G P+ + Sbjct: 116 IGASPEAIDKAEDRQKFKEAMTKIGLGSAKSGIAHSLEEALAVQAQIARETSSGGYPIVI 175 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVD--LAFEFDHKVIVEQGIKG-REIECAVLGNDNPQA 241 +P+ G + E++ L +++++E+ + G +E E V+ + Sbjct: 176 RPSFTLGGTGGGIAYNREEFEDICKRGLDLSPTNELLIEESLLGWKEYEMEVVRDKKDNC 235 Query: 242 STC--GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC-AGM 298 E + + D V + + +R ++ + +G G Sbjct: 236 IIVCSIENLDPMGIHT-------GDSITVAPAQTLTDKEYQILRNASLAVLREIGVDTGG 288 Query: 299 ARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 + V + + +++ E+N ++ +A+G + +L Sbjct: 289 SNVQFSINPEDGRMIVIEMNPRVSRSSA----LASKATGFPIAKVAAKL 333 >ref|NP_214014.1| (NC_000918) biotin carboxylase [Aquifex aeolicus] pir||G70427 biotin carboxylase - Aquifex aeolicus gb|AAC07413.1| (AE000742) biotin carboxylase [Aquifex aeolicus] Length = 477 Score = 212 bits (539), Expect = 6e-54 Identities = 53/326 (16%), Positives = 108/326 (32%), Gaps = 22/326 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R +V + I + + + Y H+ A + P + + Sbjct: 4 KVLVANRGEVAVRIIRACKELGIKTVAIYSEADVRSLHVKKADEAYLITGDPIRAYLDYV 63 Query: 89 DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLL 148 + D I P +G L E+ R + F+G DK K+++ Sbjct: 64 RIVDLAKQVGADAIHPG-YGFLAENADFARYCRRRGITFIGPTPEQIEMFGDKVKAKKVM 122 Query: 149 RDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV 208 ++ GL P R ++G P+ +K A G G+ + +EE+ Sbjct: 123 KEVGLPTIPGTE--EPVRTLEDAKHAVKEIGFPVMLKAAYGGGGRGMRVIRNEEELEKNF 180 Query: 209 DLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYI 261 + AF + +E+ ++ + IE +LG+ GE K Sbjct: 181 ESAFREAETFFGKGDLFIEKYVENPKHIEVQILGDKYGNIIHLGER--DCSIQRRHQK-- 236 Query: 262 DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEINTLP 320 ++ + ++ KI AV+A +G ++ + E E+NT Sbjct: 237 ---LIEIAPSPKLPQDLRMKILGNAVRAMTRVGYENAGTLEFLVDLKTGEYYFIEMNTRL 293 Query: 321 GFTNISMYPKLWQASGLGYTDLITRL 346 + +G+ + + R+ Sbjct: 294 QVEHT----ITEAITGVDIVEAMIRI 315 >gb|AAK25989.1|AF360279_1 (AF360279) putative biotin carboxylase [Arabidopsis thaliana] Length = 537 Score = 211 bits (538), Expect = 8e-54 Identities = 55/330 (16%), Positives = 114/330 (33%), Gaps = 23/330 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ + I + + + Y D H+ L A + + P + +I Sbjct: 76 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADEAVCIGEAPSNQSYLVI 135 Query: 89 DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLL 148 + + +G L E+ M R + F+G + + DK + + Sbjct: 136 PNVLSAAISRGCTMLHPGYGFLSENALFVEMCRDHGINFIGPNPDSIRVMGDKATARETM 195 Query: 149 RDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV 208 ++AG+ P + V +++G P+ +K G G+ ++ + Sbjct: 196 KNAGVPTVPGSDGLL--QSTEEAVRVANEIGFPVMIKATAGGGGRGMRLAKEPGEFVKLL 253 Query: 209 DLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYI 261 A + +E+ ++ R IE VL + GE + K + Sbjct: 254 QQAKSEAAAAFGNDGCYLEKFVQNPRHIEFQVLADKFGNVVHFGER--DCSIQRRNQKLL 311 Query: 262 DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG 321 +E A+ E+ + AV A ++G G+ V+ L E+NT Sbjct: 312 EE-----APSPALTAELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQ 366 Query: 322 FTNISMYPKLWQASGLGYTDLITRLIELAL 351 + ++ + DLI I +A+ Sbjct: 367 VEH--PVTEM-----IYSVDLIEEQIRVAM 389 >ref|NP_198386.1| (NC_003076) acetyl-CoA carboxylase [Arabidopsis thaliana] pir||T01180 acetyl-CoA carboxylase (EC 6.4.1.2), biotin carboxylase - Arabidopsis thaliana gb|AAC09008.1| (U90879) biotin carboxylase subunit [Arabidopsis thaliana] gb|AAC09009.1| (U91414) heteromeric acetyl-CoA carboxylase biotin carboxylase subunit [Arabidopsis thaliana] gb|AAC13611.1| (AF058826) Arabidopsis thaliana biotin carboxylase subunit (GB:U90879) dbj|BAB11486.1| (AB025636) acetyl-CoA carboxylase, biotin carboxylase [Arabidopsis thaliana] Length = 537 Score = 211 bits (538), Expect = 9e-54 Identities = 55/330 (16%), Positives = 114/330 (33%), Gaps = 23/330 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ + I + + + Y D H+ L A + + P + +I Sbjct: 76 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADEAVCIGEAPSNQSYLVI 135 Query: 89 DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLL 148 + + +G L E+ M R + F+G + + DK + + Sbjct: 136 PNVLSAAISRGCTMLHPGYGFLSENALFVEMCRDHGINFIGPNPDSIRVMGDKATARETM 195 Query: 149 RDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV 208 ++AG+ P + V +++G P+ +K G G+ ++ + Sbjct: 196 KNAGVPTVPGSDGLL--QSTEEAVRVANEIGFPVMIKATAGGGGRGMRLAKEPGEFVKLL 253 Query: 209 DLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYI 261 A + +E+ ++ R IE VL + GE + K + Sbjct: 254 QQAKSEAAAAFGNDGCYLEKFVQNPRHIEFQVLADKFGNVVHFGER--DCSIQRRNQKLL 311 Query: 262 DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG 321 +E A+ E+ + AV A ++G G+ V+ L E+NT Sbjct: 312 EE-----APSPALTAELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQ 366 Query: 322 FTNISMYPKLWQASGLGYTDLITRLIELAL 351 + ++ + DLI I +A+ Sbjct: 367 VEH--PVTEM-----IYSVDLIEEQIRVAM 389 >ref|NP_371638.1| (NC_002758) pyruvate carboxylase [Staphylococcus aureus subsp. aureus Mu50] ref|NP_374232.1| (NC_002745) pyruvate carboxylase [Staphylococcus aureus subsp. aureus N315] dbj|BAB42211.1| (AP003132) pyruvate carboxylase [Staphylococcus aureus subsp. aureus N315] dbj|BAB57276.1| (AP003361) pyruvate carboxylase [Staphylococcus aureus subsp. aureus Mu50] Length = 1150 Score = 211 bits (537), Expect = 1e-53 Identities = 54/336 (16%), Positives = 108/336 (32%), Gaps = 28/336 (8%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV---PG 81 K I + +R + + + I + N D + + + L P Sbjct: 2 KQIKKLLVANRGE-IAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPA 60 Query: 82 KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDK 141 + + + VD I P +G L E+ + F+G + DK Sbjct: 61 ESYLNIERIIDVAKQANVDAIHPG-YGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDK 119 Query: 142 DVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSE 201 + A L + P + E + G PL +K + G G+ V E Sbjct: 120 VKARTTAIKADLPVIPGTDGPIKSY--ELAKEFAEEAGFPLMIKATSGGGGKGMRIVREE 177 Query: 202 EQYAIAVDLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFY 254 + A A + +V +E+ I + IE V+G+++ E Sbjct: 178 SELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFER--DCSVQ 235 Query: 255 AYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVIN 314 K + +V ++P + +I A+Q + + V+ ++ + E Sbjct: 236 RRHQKVV-----EVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSGD-EFFFI 289 Query: 315 EINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 E+N + +G+ T+++ A Sbjct: 290 EVNPRVQVEHT----ITEMVTGIDIVK--TQILVAA 319 >ref|NP_251581.1| (NC_002516) probable biotin carboxylase/biotin carboxyl carrier protein [Pseudomonas aeruginosa] pir||F83284 probable biotin carboxylase/biotin carboxyl carrier protein PA2891 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG06279.1|AE004715_5 (AE004715) probable biotin carboxylase/biotin carboxyl carrier protein [Pseudomonas aeruginosa] Length = 661 Score = 210 bits (536), Expect = 1e-53 Identities = 58/330 (17%), Positives = 111/330 (33%), Gaps = 25/330 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQ-L 87 + +R ++ + + + Y D H+ L A + + L Sbjct: 6 KILVANRGEIACRVLRTAHELGYRSVAVYSEADADTRHVQLADEAVCIGPAAVAQSYLNL 65 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + + I P +G L E+ A + F+G D A K ++K Sbjct: 66 EAILDAARRSGAEAIHPG-YGFLSENAEFARACEAAGIVFIGPDAEAIHLMGSKRLSKIA 124 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + AG+ P A + + + ++G PL +K + G G+ V Q Sbjct: 125 MLAAGVPCIPGYEG--AEQDDATLRREAERIGYPLMIKASAGGGGRGMRLVEEPGQLLEQ 182 Query: 208 VDLAFE------FDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 + A ++I+E+ + + R +E V G+ + GE K Sbjct: 183 LRTARSEALGAFGSAELILERAVLRPRHVEIQVFGDRHGNLLYLGER--DCSVQRRHQKV 240 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 I+E + ++ + AV+A ++ G V+ L + E+NT Sbjct: 241 IEE-----APCPVLDADLRRAMGEAAVKAAASVNYVGAGTVEFLLGEDGRFYFLEMNTRL 295 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELA 350 + P +G DL+ I +A Sbjct: 296 QVEH----PVTELVTG---QDLVAWQIRIA 318 >ref|NP_454677.1| (NC_003198) carbamoyl-phosphate synthase large chain [Salmonella enterica subsp. enterica serovar Typhi] emb|CAD01221.1| (AL627265) carbamoyl-phosphate synthase large chain [Salmonella enterica subsp. enterica serovar Typhi] Length = 1075 Score = 210 bits (535), Expect = 2e-53 Identities = 54/356 (15%), Positives = 118/356 (32%), Gaps = 52/356 (14%) Query: 2 EKLRVGIVFGGKSA-----EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 ++ ++ ++ GG + E + A A+ + ++ +++ + + D S Sbjct: 558 DRDKIMVLGGGPNRIGQGIEFDYCCVHA---SLALREDGYETIMVNCNPETVSTDYDTS- 613 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L V + +I GQ L Sbjct: 614 ------DRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLK-----------------L 650 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L A +P +G+ A D++ + + L T+T + Sbjct: 651 ARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEK----AK 706 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEF--DHKVIVEQGI-KGREIECAV 233 ++G PL V+P+ + V E A D V++++ + E++ Sbjct: 707 EIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDA 766 Query: 234 LGNDN-PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + + E + + ++ D A + ++ EI D +R + Sbjct: 767 ICDGEMVLIGGIMEHIEQAGVHS-------GDSACSLPAYTLSQEIQDVMRQQVQKLAFE 819 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 L G+ V + +NEV + E+N T P + +A+G+ + R++ Sbjct: 820 LQVRGLMNVQFAV-KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAARVMA 870 Score = 171 bits (435), Expect = 7e-42 Identities = 50/358 (13%), Positives = 120/358 (32%), Gaps = 53/358 (14%) Query: 4 LRVGIVFG------GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNY 57 ++ ++ G G++ E + S A+ + + V+L+ Sbjct: 7 IKSILILGAGPIVIGQACEFDYS---GAQACKALREEGYRVILV---------------- 47 Query: 58 LLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL- 116 +PA I P + H + D + P + G + +L Sbjct: 48 ---NSNPATIMTDPEMADATYIEPIHW---EVVRKIIEKERPDAVLPTMGGQTALNCALE 101 Query: 117 ---QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAE 173 QG+L + +G+ A D+ ++ GL+ A Sbjct: 102 LERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGIAHTMEEA----LA 157 Query: 174 VESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVD--LAFEFDHKVIVEQGIKG-REIE 230 V + +G P ++P+ G + E++ + L +++++++ + G +E E Sbjct: 158 VAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDESLIGWKEYE 217 Query: 231 CAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 V+ + N IV + + + + D V + + +R ++ Sbjct: 218 MEVVRDKNDNCI----IVCSIENFDAMGIHT-GDSITVAPAQTLTDKEYQIMRNASMAVL 272 Query: 291 QTLGCA-GMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 + +G G + V + +++ E+N ++ +A+G + +L Sbjct: 273 REIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSA----LASKATGFPIAKVAAKL 326 >sp|P14846|CARB_SALTY CARBAMOYL-PHOSPHATE SYNTHASE LARGE CHAIN (CARBAMOYL-PHOSPHATE SYNTHETASE AMMONIA CHAIN) gb|AAB39256.1| (U81260) carbamoylphosphate synthetase large subunit [Salmonella typhimurium] Length = 1075 Score = 210 bits (535), Expect = 2e-53 Identities = 54/356 (15%), Positives = 118/356 (32%), Gaps = 52/356 (14%) Query: 2 EKLRVGIVFGGKSA-----EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 ++ ++ ++ GG + E + A A+ + ++ +++ + + D S Sbjct: 558 DRDKIMVLGGGPNRIGQGIEFDYCCVHA---SLALREDGYETIMVNCNPETVSTDYDTS- 613 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L V + +I GQ L Sbjct: 614 ------DRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLK-----------------L 650 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L A +P +G+ A D++ + + L T+T + Sbjct: 651 ARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEK----AK 706 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEF--DHKVIVEQGI-KGREIECAV 233 ++G PL V+P+ + V E A D V++++ + E++ Sbjct: 707 EIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDA 766 Query: 234 LGNDN-PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + + E + + ++ D A + ++ EI D +R + Sbjct: 767 ICDGEMVLIGGIMEHIEQAGVHS-------GDSACSLPAYTLSQEIQDVMRQQVQKLAFE 819 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 L G+ V + +NEV + E+N T P + +A+G+ + R++ Sbjct: 820 LQVRGLMNVQFAV-KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAARVMA 870 Score = 168 bits (425), Expect = 1e-40 Identities = 50/358 (13%), Positives = 120/358 (32%), Gaps = 53/358 (14%) Query: 4 LRVGIVFG------GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNY 57 ++ ++ G G++ E + S A+ + + V+L+ Sbjct: 7 IKSILILGAGPIVIGQACEFDYS---GAQACKALREEGYRVILV---------------- 47 Query: 58 LLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL- 116 +PA I P + H + D + P + G + +L Sbjct: 48 ---NSNPATIMTDPEMADATYIEPIHW---EVVRKIIEKERPDAVLPTMGGQTALNCALE 101 Query: 117 ---QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAE 173 QG+L + +G+ A D+ ++ GL+ A Sbjct: 102 LERQGVLEEFGVTMIGATADAGDKAEDRRRFDIAMKKIGLDTARSGIAHTMEEA----LA 157 Query: 174 VESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVD--LAFEFDHKVIVEQGIKG-REIE 230 V + +G P ++P+ G + E++ + L +++++++ + G +E E Sbjct: 158 VAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDESLIGWKEYE 217 Query: 231 CAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 V+ + N IV + + + + D V + + +R ++ Sbjct: 218 MEVVRDKNDNCI----IVCSIENFDAMGIHT-GDSITVAPAQTLTDKEYQIMRNASMAVL 272 Query: 291 QTLGCA-GMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 + +G G + V + +++ E+N ++ +A+G + +L Sbjct: 273 REIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSA----LASKATGFPIAKVAAKL 326 >ref|NP_459072.1| (NC_003197) carbamoyl-phosphate synthase, large subunit [Salmonella typhimurium LT2] gb|AAL19031.1| (AE008696) carbamoyl-phosphate synthase, large subunit [Salmonella typhimurium LT2] Length = 1075 Score = 210 bits (535), Expect = 2e-53 Identities = 54/356 (15%), Positives = 118/356 (32%), Gaps = 52/356 (14%) Query: 2 EKLRVGIVFGGKSA-----EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 ++ ++ ++ GG + E + A A+ + ++ +++ + + D S Sbjct: 558 DRDKIMVLGGGPNRIGQGIEFDYCCVHA---SLALREDGYETIMVNCNPETVSTDYDTS- 613 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L V + +I GQ L Sbjct: 614 ------DRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLK-----------------L 650 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L A +P +G+ A D++ + + L T+T + Sbjct: 651 ARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEK----AK 706 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEF--DHKVIVEQGI-KGREIECAV 233 ++G PL V+P+ + V E A D V++++ + E++ Sbjct: 707 EIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDA 766 Query: 234 LGNDN-PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + + E + + ++ D A + ++ EI D +R + Sbjct: 767 ICDGEMVLIGGIMEHIEQAGVHS-------GDSACSLPAYTLSQEIQDVMRQQVQKLAFE 819 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 L G+ V + +NEV + E+N T P + +A+G+ + R++ Sbjct: 820 LQVRGLMNVQFAV-KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAARVMA 870 Score = 171 bits (434), Expect = 9e-42 Identities = 50/358 (13%), Positives = 120/358 (32%), Gaps = 53/358 (14%) Query: 4 LRVGIVFG------GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNY 57 ++ ++ G G++ E + S A+ + + V+L+ Sbjct: 7 IKSILILGAGPIVIGQACEFDYS---GAQACKALREEGYRVILV---------------- 47 Query: 58 LLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL- 116 +PA I P + H + D + P + G + +L Sbjct: 48 ---NSNPATIMTDPEMADATYIEPIHW---EVVRKIIEKERPDAVLPTMGGQTALNCALE 101 Query: 117 ---QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAE 173 QG+L + +G+ A D+ ++ GL+ A Sbjct: 102 LERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGIAHTMEEA----LA 157 Query: 174 VESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVD--LAFEFDHKVIVEQGIKG-REIE 230 V + +G P ++P+ G + E++ + L +++++++ + G +E E Sbjct: 158 VAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDESLIGWKEYE 217 Query: 231 CAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 V+ + N IV + + + + D V + + +R ++ Sbjct: 218 MEVVRDKNDNCI----IVCSIENFDAMGIHT-GDSITVAPAQTLTDKEYQIMRNASMAVL 272 Query: 291 QTLGCA-GMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 + +G G + V + +++ E+N ++ +A+G + +L Sbjct: 273 REIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSA----LASKATGFPIAKVAAKL 326 >gb|AAF57199.1| (AE003779) CG2118 gene product [Drosophila melanogaster] Length = 684 Score = 209 bits (533), Expect = 3e-53 Identities = 53/337 (15%), Positives = 114/337 (33%), Gaps = 34/337 (10%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQ 86 I + +R ++ I + V + + + H L + + + + Sbjct: 27 ISKILISNRGEIACRVIRTARKLGVRTVAVFSDPDEKSMHTQLADESYRVGEAASSASYL 86 Query: 87 -LIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + I P +G L E + + + F+G A K +K Sbjct: 87 RGERILDIAKRSGAQAIHPG-YGFLSESVEFAELCQREGIIFMGPPSSAIRDMGIKSTSK 145 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 ++ AG+ I ++ + K+G PL +K G G+ + + Sbjct: 146 AIMAAAGVPIINGY--HGDDQSDECLQREADKIGFPLMIKAVRGGGGKGMRIAEKPDDFL 203 Query: 206 IAVDLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A++ A D V++E+ ++ R +E V + Y ++ Sbjct: 204 TALNSARTESEKSFGDSSVLLERYVRSPRHVEVQVFADQYG-----------DAVYLWER 252 Query: 259 KYIDEDGAKVVVP----AAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVI 313 + + ++ ++ ++ ++ AV+A + +G G V+ L E+ Sbjct: 253 DCSVQRRHQKIIEEAPAPGLSEDLRRELGEAAVRAAKAVGYVGAGTVEFILDKEDLSFHF 312 Query: 314 NEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 E+NT + P +G TDL+ I +A Sbjct: 313 MEMNTRLQVEH----PITEMITG---TDLVEWQIRIA 342 >ref|NP_281959.1| (NC_002163) putative D-alanine--D-alanine ligase [Campylobacter jejuni] pir||F81351 probable D-alanine--D-alanine ligase (EC 6.3.2.4) Cj0798c [imported] - Campylobacter jejuni (strain NCTC 11168) emb|CAB73063.1| (AL139076) putative D-alanine--D-alanine ligase [Campylobacter jejuni] Length = 346 Score = 209 bits (533), Expect = 3e-53 Identities = 78/355 (21%), Positives = 157/355 (43%), Gaps = 35/355 (9%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 ++ I+FGG S EHE+S+ SA + I+++ + + D++ +++ + Sbjct: 1 MKFAILFGGNSYEHEISIVSAVVLKKVINQN---LEFIFCDEERRFYHIPS--------- 48 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNG--------QPLPTVDVIFPIVHGTLGEDGS 115 + ++ + + K E +L Q G + + + ++HG GEDG Sbjct: 49 -----EKMNSKTFSTKAYKKEKELFIKQGGFFSKGFLKENKLECECVINLIHGRDGEDGK 103 Query: 116 LQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVE 175 + + ++ F+G + AS +K++TK + G+ + L + Sbjct: 104 IAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTLDYTILRKNQNSKE------ 157 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVL 234 KL P +KPA GSS+G+S V E+ A D+ FEFD+ ++VE+ +E A Sbjct: 158 -KLSFPCIIKPARLGSSIGISIVKDEKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGC 216 Query: 235 GNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 ++ + E +F ++ KY+ G ++ A ++ E+ +K++ + Y L Sbjct: 217 MINDEFVFSIIEEPKKKEFLDFEQKYLSFSGHNELIEADLSEELKEKLKDSFKKIYNPLF 276 Query: 295 CAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDL-ITRLIE 348 + R D F+ +NE+ +NEIN PG ++ + + ++I+ Sbjct: 277 KGALIRCDFFIL-DNEIYLNEINPNPGSLANYLFKDFNTTLNALADQISLEKMIK 330 >emb|CAB09721.1| (Z97025) pyruvate carboxylase [Bacillus subtilis] Length = 384 Score = 209 bits (532), Expect = 4e-53 Identities = 56/345 (16%), Positives = 107/345 (30%), Gaps = 27/345 (7%) Query: 23 SAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ---V 79 S ++I + +R + + + I + D ++ + L Sbjct: 2 SQQSIQKVLVANRGE-IAIRIFRACTELNIRTVAVYSKEDSGSYHRYKADEAYLVGEGKK 60 Query: 80 PGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACM 139 P + + VD I P +G L E+ + F+G Sbjct: 61 PIDAYLDIEGIIDIAKRNKVDAIHPG-YGFLSENIHFARRCEEEGIVFIGPKSEHLDMFG 119 Query: 140 DKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVT 199 DK + AG+ + P + + G P+ +K + G G+ V Sbjct: 120 DKVKAREQAEKAGIPVIPGSDGP--AETLEAVEQFGQANGYPIIIKASLGGGGRGMRIVR 177 Query: 200 SEEQYAIAVDLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSD 252 SE + A + A + +V VE+ I+ + IE V+G+ E Sbjct: 178 SESEVKEAYERAKSEAKAAFGNDEVYVEKLIENPKHIEVQVIGDKQGNVVHLFER--DCS 235 Query: 253 FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVV 312 K +V +++PE+ D+I AV + + V+ + NE Sbjct: 236 VQRRHQKV-----IEVAPSVSLSPELRDQICEAAVALAKNVNYINAGTVEFLV-ANNEFY 289 Query: 313 INEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 E+N + +G+ L+ H+ Sbjct: 290 FIEVNPRVQVEHT----ITEMITGVDIVQT-QILVAQGHSLHSKK 329 >gb|AAK60339.1| (AY034410) biotin carboxylase [Brassica napus] Length = 535 Score = 208 bits (531), Expect = 5e-53 Identities = 56/342 (16%), Positives = 120/342 (34%), Gaps = 26/342 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ + I + + + Y D H+ L A + + P + +I Sbjct: 74 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADEAVCIGEAPSNQSYLVI 133 Query: 89 DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLL 148 + + +G E+ M R + F+G + + DK + + Sbjct: 134 PNVLSAAISRGCTMLHPGYGFHSENALFVEMCREHRINFIGPNPDSIRVMGDKSTARETM 193 Query: 149 RDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV 208 ++AG+ P + ++ +++G P+ +K G G+ ++ + Sbjct: 194 KNAGVPTVPGSDGLL--KSTEEGVKLANEIGFPVMIKATAGGGGRGMRLANEPSEFVKLL 251 Query: 209 DLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYI 261 A + V +E+ ++ R IE +L + GE + K + Sbjct: 252 QAAKSEAAAAFGNDGVYLEKYVQNPRHIEFQILADKFGNVVHFGER--DCSIQRRNQKLL 309 Query: 262 DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG 321 +E A+ PE+ + AV A ++G G+ V+ L E+NT Sbjct: 310 EE-----APSPALTPELRKAMGDAAVAAAASIGYVGVGTVEFLLDERGSFYFMEMNTRIQ 364 Query: 322 FTNISMYPKLWQASGLGYTDLITRLIELALE---RHAADNAL 360 + ++ + DLI I +A+ R+ D + Sbjct: 365 VEH--PVTEM-----IYSVDLIEEQIRVAMGEKLRYTQDEIV 399 >pdb|1CE8|A Chain A, Carbamoyl Phosphate Synthetase From Escherichis Coli With Complexed With The Allosteric Ligand Imp pdb|1CE8|C Chain C, Carbamoyl Phosphate Synthetase From Escherichis Coli With Complexed With The Allosteric Ligand Imp pdb|1CE8|E Chain E, Carbamoyl Phosphate Synthetase From Escherichis Coli With Complexed With The Allosteric Ligand Imp pdb|1CE8|G Chain G, Carbamoyl Phosphate Synthetase From Escherichis Coli With Complexed With The Allosteric Ligand Imp Length = 1073 Score = 208 bits (530), Expect = 6e-53 Identities = 57/369 (15%), Positives = 119/369 (31%), Gaps = 54/369 (14%) Query: 2 EKLRVGIVFGGKSA-----EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 ++ ++ ++ GG + E + A A+ + ++ +++ + + D S Sbjct: 558 DREKIMVLGGGPNRIGQGIEFDYCCVHA---SLALREDGYETIMVNCNPETVSTDYDTS- 613 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L V + +I GQ L Sbjct: 614 ------DRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLK-----------------L 650 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L A +P +G+ A D++ + + L T+T Sbjct: 651 ARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEK----AK 706 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEF--DHKVIVEQGI-KGREIECAV 233 ++G PL V+P+ + V E A D V+++ + E++ Sbjct: 707 EIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDA 766 Query: 234 LGNDN-PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + + E + + ++ D A + ++ EI D +R + Sbjct: 767 ICDGEMVLIGGIMEHIEQAGVHS-------GDSACSLPAYTLSQEIQDVMRQQVQKLAFE 819 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 L G+ V + NEV + E+N T P + +A+G+ + R++ A + Sbjct: 820 LQVRGLMNVQFAV-KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAARVM--AGK 872 Query: 353 RHAADNALK 361 A K Sbjct: 873 SLAEQGVTK 881 Score = 166 bits (421), Expect = 3e-40 Identities = 48/358 (13%), Positives = 116/358 (31%), Gaps = 53/358 (14%) Query: 4 LRVGIVFG------GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNY 57 ++ ++ G G++ E + S A+ + + V+ + Sbjct: 7 IKSILILGAGPIVIGQACEFDYS---GAQACKALREEGYRVINV---------------- 47 Query: 58 LLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL- 116 +PA I P + H + D + P + G + +L Sbjct: 48 ---NSNPATIMTDPEMADATYIEPIHW---EVVRKIIEKERPDAVLPTMGGQTALNCALE 101 Query: 117 ---QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAE 173 QG+L + +G+ A D+ ++ GL A Sbjct: 102 LERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEA----LA 157 Query: 174 VESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKG-REIE 230 V + +G P ++P+ G + E++ + ++++++ + G +E E Sbjct: 158 VAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYE 217 Query: 231 CAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 V+ + N IV + + + + D V + + +R ++ Sbjct: 218 MEVVRDKNDNCI----IVCSIENFDAMGIHT-GDSITVAPAQTLTDKEYQIMRNASMAVL 272 Query: 291 QTLGCA-GMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 + +G G + V + +++ E+N ++ +A+G + +L Sbjct: 273 REIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSA----LASKATGFPIAKVAAKL 326 >ref|NP_414574.1| (NC_000913) carbamoyl-phosphate synthase large subunit [Escherichia coli K12] sp|P00968|CARB_ECOLI CARBAMOYL-PHOSPHATE SYNTHASE LARGE CHAIN (CARBAMOYL-PHOSPHATE SYNTHETASE AMMONIA CHAIN) pir||SYECCP carbamoyl-phosphate synthase (glutamine-hydrolyzing) (EC 6.3.5.5) large chain [validated] - Escherichia coli pdb|1BXR|A Chain A, Structure Of Carbamoyl Phosphate Synthetase Complexed With The Atp Analog Amppnp pdb|1BXR|C Chain C, Structure Of Carbamoyl Phosphate Synthetase Complexed With The Atp Analog Amppnp pdb|1BXR|E Chain E, Structure Of Carbamoyl Phosphate Synthetase Complexed With The Atp Analog Amppnp pdb|1BXR|G Chain G, Structure Of Carbamoyl Phosphate Synthetase Complexed With The Atp Analog Amppnp pdb|1JDB|K Chain K, Carbamoyl Phosphate Synthetase From Escherichia Coli pdb|1CS0|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase Complexed At Cys269 In The Small Subunit With The Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde pdb|1CS0|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase Complexed At Cys269 In The Small Subunit With The Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde pdb|1CS0|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase Complexed At Cys269 In The Small Subunit With The Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde pdb|1CS0|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase Complexed At Cys269 In The Small Subunit With The Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde pdb|1C30|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269s pdb|1C30|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269s pdb|1C30|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269s pdb|1C30|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269s pdb|1C3O|A Chain A, Crystal Structure Of The Carbamoyl Phosphate Synthetase: Small Subunit Mutant C269s With Bound Glutamine pdb|1C3O|C Chain C, Crystal Structure Of The Carbamoyl Phosphate Synthetase: Small Subunit Mutant C269s With Bound Glutamine pdb|1C3O|E Chain E, Crystal Structure Of The Carbamoyl Phosphate Synthetase: Small Subunit Mutant C269s With Bound Glutamine pdb|1C3O|G Chain G, Crystal Structure Of The Carbamoyl Phosphate Synthetase: Small Subunit Mutant C269s With Bound Glutamine pdb|1JDB|B Chain B, Carbamoyl Phosphate Synthetase From Escherichia Coli pdb|1JDB|E Chain E, Carbamoyl Phosphate Synthetase From Escherichia Coli pdb|1JDB|H Chain H, Carbamoyl Phosphate Synthetase From Escherichia Coli emb|CAA24744.1| (V01500) carB reading frame [Escherichia coli] gb|AAA23539.1| (J01597) carbamoyl-phosphate synthetase subunit B [Escherichia coli] dbj|BAA01311.1| (D10483) carbamoyl-phosphate synthase large chain [Escherichia coli] gb|AAC73144.1| (AE000113) carbamoyl-phosphate synthase large subunit [Escherichia coli K12] Length = 1073 Score = 208 bits (530), Expect = 6e-53 Identities = 57/369 (15%), Positives = 119/369 (31%), Gaps = 54/369 (14%) Query: 2 EKLRVGIVFGGKSA-----EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 ++ ++ ++ GG + E + A A+ + ++ +++ + + D S Sbjct: 558 DREKIMVLGGGPNRIGQGIEFDYCCVHA---SLALREDGYETIMVNCNPETVSTDYDTS- 613 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L V + +I GQ L Sbjct: 614 ------DRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLK-----------------L 650 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L A +P +G+ A D++ + + L T+T Sbjct: 651 ARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEK----AK 706 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEF--DHKVIVEQGI-KGREIECAV 233 ++G PL V+P+ + V E A D V+++ + E++ Sbjct: 707 EIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDA 766 Query: 234 LGNDN-PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + + E + + ++ D A + ++ EI D +R + Sbjct: 767 ICDGEMVLIGGIMEHIEQAGVHS-------GDSACSLPAYTLSQEIQDVMRQQVQKLAFE 819 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 L G+ V + NEV + E+N T P + +A+G+ + R++ A + Sbjct: 820 LQVRGLMNVQFAV-KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAARVM--AGK 872 Query: 353 RHAADNALK 361 A K Sbjct: 873 SLAEQGVTK 881 Score = 168 bits (426), Expect = 8e-41 Identities = 49/358 (13%), Positives = 117/358 (31%), Gaps = 53/358 (14%) Query: 4 LRVGIVFG------GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNY 57 ++ ++ G G++ E + S A+ + + V+L+ Sbjct: 7 IKSILILGAGPIVIGQACEFDYS---GAQACKALREEGYRVILV---------------- 47 Query: 58 LLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL- 116 +PA I P + H + D + P + G + +L Sbjct: 48 ---NSNPATIMTDPEMADATYIEPIHW---EVVRKIIEKERPDAVLPTMGGQTALNCALE 101 Query: 117 ---QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAE 173 QG+L + +G+ A D+ ++ GL A Sbjct: 102 LERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEA----LA 157 Query: 174 VESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKG-REIE 230 V + +G P ++P+ G + E++ + ++++++ + G +E E Sbjct: 158 VAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYE 217 Query: 231 CAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 V+ + N IV + + + + D V + + +R ++ Sbjct: 218 MEVVRDKNDNCI----IVCSIENFDAMGIHT-GDSITVAPAQTLTDKEYQIMRNASMAVL 272 Query: 291 QTLGCA-GMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 + +G G + V + +++ E+N ++ +A+G + +L Sbjct: 273 REIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSA----LASKATGFPIAKVAAKL 326 >ref|NP_285727.1| (NC_002655) carbamoyl-phosphate synthase large subunit [Escherichia coli O157:H7 EDL933] ref|NP_308063.1| (NC_002695) carbamoyl-phosphate synthase large subunit [Escherichia coli O157:H7] gb|AAG54335.1|AE005180_2 (AE005180) carbamoyl-phosphate synthase large subunit [Escherichia coli O157:H7 EDL933] dbj|BAB33459.1| (AP002550) carbamoyl-phosphate synthase large subunit [Escherichia coli O157:H7] Length = 1073 Score = 208 bits (529), Expect = 8e-53 Identities = 57/369 (15%), Positives = 119/369 (31%), Gaps = 54/369 (14%) Query: 2 EKLRVGIVFGGKSA-----EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 ++ ++ ++ GG + E + A A+ + ++ +++ + + D S Sbjct: 558 DREKIMVLGGGPNRIGQGIEFDYCCVHA---SLALREDGYETIMVNCNPETVSTDYDTS- 613 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L V + +I GQ L Sbjct: 614 ------DRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLK-----------------L 650 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L A +P +G+ A D++ + + L T+T Sbjct: 651 ARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEK----AK 706 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEF--DHKVIVEQGI-KGREIECAV 233 ++G PL V+P+ + V E A D V+++ + E++ Sbjct: 707 EIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDA 766 Query: 234 LGNDN-PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + + E + + ++ D A + ++ EI D +R + Sbjct: 767 ICDGEMVLIGGIMEHIEQAGVHS-------GDSACSLPAYTLSQEIQDVMRQQVQKLAFE 819 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 L G+ V + NEV + E+N T P + +A+G+ + R++ A + Sbjct: 820 LQVRGLMNVQFAV-KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAARVM--AGK 872 Query: 353 RHAADNALK 361 A K Sbjct: 873 SLAEQGVTK 881 Score = 168 bits (426), Expect = 9e-41 Identities = 49/358 (13%), Positives = 117/358 (31%), Gaps = 53/358 (14%) Query: 4 LRVGIVFG------GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNY 57 ++ ++ G G++ E + S A+ + + V+L+ Sbjct: 7 IKSILILGAGPIVIGQACEFDYS---GAQACKALREEGYRVILV---------------- 47 Query: 58 LLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL- 116 +PA I P + H + D + P + G + +L Sbjct: 48 ---NSNPATIMTDPEMADATYIEPIHW---EVVRKIIEKERPDAVLPTMGGQTALNCALE 101 Query: 117 ---QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAE 173 QG+L + +G+ A D+ ++ GL A Sbjct: 102 LERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEA----LA 157 Query: 174 VESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKG-REIE 230 V + +G P ++P+ G + E++ + ++++++ + G +E E Sbjct: 158 VAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYE 217 Query: 231 CAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 V+ + N IV + + + + D V + + +R ++ Sbjct: 218 MEVVRDKNDNCI----IVCSIENFDAMGIHT-GDSITVAPAQTLTDKEYQIMRNASMAVL 272 Query: 291 QTLGCA-GMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 + +G G + V + +++ E+N ++ +A+G + +L Sbjct: 273 REIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSA----LASKATGFPIAKVAAKL 326 >ref|NP_246444.1| (NC_002663) CarB [Pasteurella multocida] gb|AAK03589.1| (AE006187) CarB [Pasteurella multocida] Length = 1068 Score = 208 bits (529), Expect = 9e-53 Identities = 52/356 (14%), Positives = 124/356 (34%), Gaps = 52/356 (14%) Query: 2 EKLRVGIVFGGKSA-----EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 +K ++ I+ GG + E + A A+ ++ F+ +++ + + D S Sbjct: 552 DKKKIMILGGGPNRIGQGIEFDYCCVHA---SLALREAGFETIMVNCNPETVSTDFDTS- 607 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L + + H +I GQ L Sbjct: 608 ------DRLYFEPLTLEDVLEIIHVEKPHGVIVHYGGQTPLK-----------------L 644 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L + +G+ + A D++ +++L L T A ++ Sbjct: 645 ANDLHANGVNIIGTSADSIDAAEDRERFQQILHKLHLKQPTNRTARNAEEAV----KLAE 700 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEF--DHKVIVEQGI-KGREIECAV 233 ++G PL V+P+ + V + ++ + A D ++++ + E++ Sbjct: 701 EVGYPLVVRPSYVLGGRAMQIVYNVDELQRYMREAVSVSNDSPILLDHFLNNAIEVDVDC 760 Query: 234 LGND-NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + + + + + ++ D A + P +++ E+ D+IR + Sbjct: 761 ICDGAEVVIGGIMQHIEQAGIHS-------GDSACSLPPYSLSQEVQDEIRRQTAEMAFA 813 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 LG G+ V + + + + E+N T P + +A+G + R++ Sbjct: 814 LGVKGLMNVQFAV-QDGVIYVLEVNPRASRT----VPFVSKATGRPLAKIAARVMA 864 Score = 165 bits (418), Expect = 6e-40 Identities = 52/344 (15%), Positives = 118/344 (34%), Gaps = 47/344 (13%) Query: 12 GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRP 71 G++ E + S A+ + + VVL+ +PA I P Sbjct: 21 GQACEFDYS---GAQACKALREEGYKVVLV-------------------NSNPATIMTDP 58 Query: 72 SATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL----QGMLRVANLPF 127 + + + + D I P + G + +L G+L+ N+ Sbjct: 59 DMADVTYIEPIEWRTV---EKIIEKERPDAILPTMGGQTALNCALDLSKNGVLKKYNVEL 115 Query: 128 VGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187 +G+ A D+ K + GL+ + +EV G P ++P+ Sbjct: 116 IGAKEDAIDKAEDRGRFKEAMEKIGLSTPKSFVCHTLEEAWAAQSEV----GFPTLIRPS 171 Query: 188 NQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKG-REIECAVLGNDNPQASTC 244 G +++++ + F+ ++++EQ + G +E E V+ + Sbjct: 172 FTMGGSGGGIAYNKDEFYAICERGFDASPTHELLIEQSVLGWKEYEMEVVRDKADNCI-- 229 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC-AGMARVDV 303 IV + + + + D V + + +R ++ + +G G + V Sbjct: 230 --IVCSIENFDPMGVHT-GDSITVAPAQTLTDKEYQIMRNASIAVLREIGVDTGGSNVQF 286 Query: 304 FLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 + E+++ E+N ++ +A+G + +L Sbjct: 287 AINPENGEMIVIEMNPRVSRSSA----LASKATGFPIAKVAAKL 326 >ref|NP_274851.1| (NC_003112) carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis MC58] pir||D81035 carbamoyl-phosphate synthase (glutamine-hydrolyzing) (EC 6.3.5.5) large chain NMB1855 [similarity] - Neisseria meningitidis (group B strain MD58) gb|AAF42189.1| (AE002535) carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis MC58] Length = 1071 Score = 208 bits (529), Expect = 9e-53 Identities = 59/356 (16%), Positives = 125/356 (34%), Gaps = 52/356 (14%) Query: 2 EKLRVGIVFGGKSA-----EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 ++ +V I+ GG + E + A A+ +S F+ +++ + + D S Sbjct: 552 DRKKVMILGGGPNRIGQGIEFDYCCVHA---ALALRESGFETIMVNCNPETVSTDFDTS- 607 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L V ++ +I GQ L Sbjct: 608 ------DRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTPLK-----------------L 644 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L + +G+ + A D++ +++L D GL P + Sbjct: 645 ANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVK----AE 700 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEF--DHKVIVEQGI-KGREIECAV 233 ++G PL V+P+ + V S E+ + A + D V+++ + E++ Sbjct: 701 EIGYPLVVRPSYVLGGRAMQVVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDC 760 Query: 234 LGND-NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + + + + V + ++ D+ + P +++ EI D+IR Sbjct: 761 VSDGKDVVIGGIMQHVEQAGIHSGDSGCS-------LPPYSLSEEIQDEIRRQTKAMAYA 813 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 LG G+ V + + V + E+N T P + +A+G+ + R + Sbjct: 814 LGVVGLMNVQFAV-QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKVGARCMA 864 Score = 164 bits (416), Expect = 1e-39 Identities = 51/344 (14%), Positives = 120/344 (34%), Gaps = 47/344 (13%) Query: 12 GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRP 71 G++ E + S A+ + + V+L+ +PA I P Sbjct: 21 GQACEFDYS---GAQACKALREEGYKVILV-------------------NSNPATIMTDP 58 Query: 72 SATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL----QGMLRVANLPF 127 + + + + D I P + G + +L G+L N+ Sbjct: 59 EMADVTYIEPIMWQTV---EKIIAKERPDAILPTMGGQTALNCALDLARNGVLAKYNVEL 115 Query: 128 VGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187 +G+ A D+ K + GL+ N + + ++G P ++P+ Sbjct: 116 IGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFVCHTMNEALAA----QEQVGFPTLIRPS 171 Query: 188 NQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKG-REIECAVLGNDNPQASTC 244 G +++++ + F+ ++++EQ + G +E E V+ + N Sbjct: 172 FTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQSVLGWKEYEMEVVRDKNDNCI-- 229 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC-AGMARVDV 303 I+ + + + + D V + + +R ++ + +G G + V Sbjct: 230 --IICSIENFDPMGVHT-GDSITVAPAQTLTDKEYQIMRNASLAVLREIGVDTGGSNVQF 286 Query: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 + P E+++ E+N ++ +A+G + +L Sbjct: 287 AVNPANGEMIVIEMNPRVSRSSA----LASKATGFPIAKVAAKL 326 >gb|AAF16526.1|AF191301_2 (AF191301) ADP-forming, carbamate-phosphorylating [Medicago sativa] Length = 1072 Score = 208 bits (529), Expect = 1e-52 Identities = 51/354 (14%), Positives = 118/354 (32%), Gaps = 52/354 (14%) Query: 2 EKLRVGIVFGGKSA-----EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 +K ++ ++ GG + E + A A+ + ++ +++ + + D S Sbjct: 557 DKKKILVIGGGPNRIGQGIEFDYCCVHA---ALAMREDGYETIMVNCNPETVSTDYDTS- 612 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D L V + +I GQ L Sbjct: 613 ------DRLFFEPVTLEDVLEIVHKEKPVGVIVQFGGQTPLK-----------------L 649 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L +P +G+ A D++ ++++ GL P + ++ Sbjct: 650 ARALEAEGVPIIGTSPDAIDKAEDRERFQQMINKLGLLQPPNAIVRSLEEALLA----AD 705 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEF--DHKVIVEQGI-KGREIEC-A 232 K+G PL V+P+ + V E++ + A + D V+++ + E++ + Sbjct: 706 KVGYPLVVRPSYVLGGRAMEIVYKEDELRTYMRTAVQVSEDAPVLLDHFLNNAIEVDIDS 765 Query: 233 VLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 V + + ++ D A + P ++ ++ D +R I + Sbjct: 766 VSDGKQVVIGGIMQHIEQCGVHS-------GDSACSLPPYSLPADVQDDMREIVKKMAIE 818 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 LG G+ + + ++ + E+N T P + + G+ + R Sbjct: 819 LGVIGLMNTQLAY-QDGKIYVIEVNPRASRT----VPFVSKCIGVSLAKVAARC 867 Score = 171 bits (434), Expect = 9e-42 Identities = 52/344 (15%), Positives = 118/344 (34%), Gaps = 47/344 (13%) Query: 12 GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRP 71 G++ E + S A+ + + V+L+ + DPA Sbjct: 21 GQACEFDYS---GAQACKALREEGYRVILVNSNPATIMT------------DPAMADATY 65 Query: 72 SATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ----GMLRVANLPF 127 Q K DVI P + G + +L G+L N+ Sbjct: 66 IEPIEWQTVAK----------IIEKERPDVILPTMGGQTALNCALALAKNGVLEKYNVEL 115 Query: 128 VGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187 +G+ A D+++ + ++ GL+ A + + E G P ++P+ Sbjct: 116 IGAKEEAINMAEDRNLFDQAMKRIGLSCARAKIVHTLEEAKEAPKEF----GFPCIIRPS 171 Query: 188 NQGSSVGVSKVTSEEQYAIAVD--LAFEFDHKVIVEQGIKG-REIECAVLGNDNPQASTC 244 G + +++ L +++++++ + G +E E V+ + N Sbjct: 172 FTMGGSGGGIAYNWDEFEEICTRGLDLSPTNELLIDESLLGWKEYEMEVVRDKNDNCI-- 229 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA-GMARVDV 303 IV + + + + D V + + +R ++ + +G G + V Sbjct: 230 --IVCSIENFDPMGVHT-GDSITVAPAQTLTDKEYQIMRNASIAVLREIGVETGGSNVQF 286 Query: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 + P + +V+ E+N ++ +A+G + +L Sbjct: 287 AVNPVDGRMVVIEMNPRVSRSSA----LASKATGFPIAKIAAKL 326 >ref|NP_298397.1| (NC_002488) carbamoyl-phosphate synthase large chain [Xylella fastidiosa 9a5c] pir||C82723 carbamoyl-phosphate synthase large chain XF1107 [imported] - Xylella fastidiosa (strain 9a5c) gb|AAF83917.1|AE003946_8 (AE003946) carbamoyl-phosphate synthase large chain [Xylella fastidiosa 9a5c] Length = 1080 Score = 207 bits (527), Expect = 1e-52 Identities = 57/359 (15%), Positives = 126/359 (34%), Gaps = 56/359 (15%) Query: 2 EKLRVGIVFGGKSA-----EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 ++ ++ I+ GG + E + A A+ + F+ +++ + + D S Sbjct: 558 DRRKIMILGGGPNRIGQGIEFDYCCVHA---ALALREDGFETIMVNCNPETVSTDYDTS- 613 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L V +H +I GQ L Sbjct: 614 ------DRLYFEPLTLEDVLEIVEVEHPVGVIVQYGGQTPLK-----------------L 650 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L +P +G+ + D++ ++L++ GL P T A + + Sbjct: 651 AKALEANGVPVIGTSPESIDLAEDRERFQKLVQQLGLRQPPNCTARTAEEALV----LAR 706 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEF--DHKVIVEQGIK-GREIECAV 233 ++G PL V+P+ + V E A V A + D V++++ + E++ + Sbjct: 707 EIGYPLVVRPSYVLGGRAMEIVYGEADLARYVRDAVKVSNDSPVLLDRFLDNAVEVDVDI 766 Query: 234 LGNDNPQA--STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 + + Q E + + ++ D + + P +++ D +R ++ Q Sbjct: 767 IADREGQVLIGGVMEHIEEAGVHS-------GDSSCSLPPYSLSAATQDDLRRQVIRLAQ 819 Query: 292 TLGCAGMARVDVFLTPENE----VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 L G+ + ++ V + E+N T P + +A+G+ + R Sbjct: 820 ALNVIGLMNTQFAIQSNDDGSDIVYLLEVNPRASRT----VPFVSKATGVPLAKIAARC 874 Score = 161 bits (408), Expect = 1e-38 Identities = 54/346 (15%), Positives = 120/346 (34%), Gaps = 51/346 (14%) Query: 12 GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRP 71 G++ E + S A+ F VVL+ +PA I P Sbjct: 21 GQACEFDYS---GAQACKALRAEGFRVVLV-------------------NSNPATIMTDP 58 Query: 72 SATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL----QGMLRVANLPF 127 + H + + D + P + G + +L G+L + Sbjct: 59 DMADAVYIEPIHWRTV---EKIIAKEKPDALLPTMGGQTALNCALDLADHGVLEKYGVEL 115 Query: 128 VGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187 +G+ A D+++ + +++ GL R E+++K+G P ++P+ Sbjct: 116 IGAKREAIRMAEDRELFRVAMQEIGLECPKAEVAKSLERA----LEIQAKVGFPTIIRPS 171 Query: 188 NQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKG-REIECAVLGNDNPQASTC 244 G + +++ + E +V+VE+ + G +E E V+ + + Sbjct: 172 FTLGGTGGGITYNRQEFEEIIKRGLELSPVHEVLVEESVLGWKEFEMEVVRDASDNCIIV 231 Query: 245 --GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC-AGMARV 301 E + + D V ++ + ++R ++ + +G G + V Sbjct: 232 CSIENLDPMGVHT-------GDSITVAPAQTLSDKEYQRLRDASIAVLRKIGVDTGGSNV 284 Query: 302 DVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 + P+ VV+ E+N ++ +A+G + +L Sbjct: 285 QFGIDPQTGRVVVIEMNPRVSRSSA----LASKATGFPIAKIAAKL 326 >ref|NP_283414.1| (NC_003116) carbamoyl phosphate synthase large subunit [Neisseria meningitidis Z2491] pir||F81979 carbamoyl-phosphate synthase (glutamine-hydrolyzing) (EC 6.3.5.5) large chain NMA0602 [imported] - Neisseria meningitidis (group A strain Z2491) emb|CAB83892.1| (AL162753) carbamoyl phosphate synthase large subunit [Neisseria meningitidis Z2491] Length = 1071 Score = 207 bits (526), Expect = 2e-52 Identities = 60/356 (16%), Positives = 125/356 (34%), Gaps = 52/356 (14%) Query: 2 EKLRVGIVFGGKSA-----EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 ++ +V I+ GG + E + A A+ +S F+ +++ + + D S Sbjct: 552 DRKKVMILGGGPNRIGQGIEFDYCCVHA---ALALRESGFETIMVNCNPETVSTDFDTS- 607 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L V ++ +I GQ L Sbjct: 608 ------DRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTPLK-----------------L 644 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L + +G+ + A D++ +++L D GL P + Sbjct: 645 ANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVK----AE 700 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEF--DHKVIVEQGI-KGREIECAV 233 ++G PL V+P+ + V S EQ + A + D V+++ + E++ Sbjct: 701 EIGYPLVVRPSYVLGGRAMQIVHSAEQLQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDC 760 Query: 234 LGND-NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + + + + V + ++ D+ + P +++ EI D+IR Sbjct: 761 VSDGKDVVIGGIMQHVEQAGIHSGDSGCS-------LPPYSLSEEIQDEIRRQTKAMAYA 813 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 LG G+ V + + V + E+N T P + +A+G+ + R + Sbjct: 814 LGVVGLMNVQFAV-QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKVGARCMA 864 Score = 165 bits (417), Expect = 9e-40 Identities = 50/344 (14%), Positives = 119/344 (34%), Gaps = 47/344 (13%) Query: 12 GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRP 71 G++ E + S A+ + + V+L+ +PA I P Sbjct: 21 GQACEFDYS---GAQACKALREEGYKVILV-------------------NSNPATIMTDP 58 Query: 72 SATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL----QGMLRVANLPF 127 + + + + D I P + G + +L G+L N+ Sbjct: 59 EMADVTYIEPIMWQTV---EKIIAKERPDAILPTMGGQTALNCALDLARNGVLAKYNVEL 115 Query: 128 VGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187 +G+ A D+ K + GL+ N + + ++G P ++P+ Sbjct: 116 IGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFVCHTMNEALAA----QEQVGFPTLIRPS 171 Query: 188 NQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKG-REIECAVLGNDNPQASTC 244 G +++++ + F+ ++++EQ + G +E E V+ + N Sbjct: 172 FTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQSVLGWKEYEMEVVRDKNDNCI-- 229 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC-AGMARVDV 303 I+ + + + + D V + + +R ++ + +G G + V Sbjct: 230 --IICSIENFDPMGVHT-GDSITVAPAQTLTDKEYQIMRNASLAVLREIGVDTGGSNVQF 286 Query: 304 FLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 + E+++ E+N ++ +A+G + +L Sbjct: 287 AVNPENGEMIVIEMNPRVSRSSA----LASKATGFPIAKVAAKL 326 >ref|NP_248224.1| (NC_000909) biotin carboxylase (accC) [Methanococcus jannaschii] sp|Q58626|PYCA_METJA PYRUVATE CARBOXYLASE SUBUNIT A (PYRUVIC CARBOXYLASE A) pir||D64453 biotin carboxylase (EC 6.3.4.14) - Methanococcus jannaschii gb|AAB99232.1| (U67563) biotin carboxylase (accC) [Methanococcus jannaschii] Length = 501 Score = 206 bits (525), Expect = 2e-52 Identities = 59/326 (18%), Positives = 118/326 (36%), Gaps = 23/326 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ + I + + + Y H L A + P + I Sbjct: 4 KVLIANRGEIAIRIIRACWELGIKTVAVYSEADKRSLHATLADEAYCIGPAPAAKSYLNI 63 Query: 89 D-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 D N VD I P +G L E+ ++ A F+G + A A K K++ Sbjct: 64 DAILNVAEKAKVDAIHPG-YGFLAENAEFARAVKKAGFEFIGPNPDAIEAMGSKINAKKI 122 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 ++ AG+ + P + E+ +G P+ VK + G +G+S S+E+ Sbjct: 123 MKKAGVPLIPGSEGAIEDIDEAI--EIAEAIGFPVVVKASAGGGGMGMSVAYSKEELKEV 180 Query: 208 VDLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 ++ A D V +E+ ++ R IE +LG+ + G+ K Sbjct: 181 IESARNIAKSAFGDPTVFIEKYLENPRHIEIQLLGDKHGNIIHLGDR--ECSIQRRHQKL 238 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 I+E + E+ +++ A++A + + V+ E+NT Sbjct: 239 IEE-----APSPIMTEELRERMGEAAIKAGKAINYDSAGTVEFLY-ENGNFYFLEMNTRI 292 Query: 321 GFTNISMYPKLWQASGLGYTDLITRL 346 + Q +G+ + ++ Sbjct: 293 QVEHTVT----EQVTGIDLVKAMIKI 314 >ref|NP_300241.1| (NC_002491) biotin carboxylase [Chlamydophila pneumoniae J138] ref|NP_445129.1| (NC_002179) acetyl-coenzyme A carboxylase, biotin carboxylase [Chlamydophila pneumoniae AR39] pir||G81560 acetyl-coenzyme A carboxylase, biotin carboxylase CP0586 [imported] - Chlamydophila pneumoniae (strain AR39) gb|AAF38404.1| (AE002217) acetyl-coenzyme A carboxylase, biotin carboxylase [Chlamydophila pneumoniae AR39] dbj|BAA98392.1| (AP002545) biotin carboxylase [Chlamydophila pneumoniae J138] Length = 454 Score = 206 bits (525), Expect = 3e-52 Identities = 58/331 (17%), Positives = 119/331 (35%), Gaps = 25/331 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ + I +S + Y L + H+ L A + + + I Sbjct: 3 KVLIANRGEIAVRIIRACHDLGLSTVAVYSLADQEALHVLLADEAICIGEPQAAKSYLKI 62 Query: 89 -DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + + D + P +G L E+ + + L F+G + A DK K L Sbjct: 63 SNILAACEITGADAVHPG-YGFLSENANFASICESCGLTFIGPSSESIAMMGDKIAAKSL 121 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + + P + ++ K+G P+ +K G G+ V ++++ A Sbjct: 122 AKKIKCPVIPGSEGIIEDESEG--LKIAEKIGFPIVIKAVAGGGGRGIRIVKEKDEFYRA 179 Query: 208 VDLAFEF------DHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A + V +E+ I+ R +E V+G+ + GE + Sbjct: 180 FSAARAEAEAGFNNPNVYIEKFIENPRHLEIQVIGDTHGNYVHLGER-------DCTIQR 232 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 + + + EI K+ IAV ++ G + V+ L + + E+NT Sbjct: 233 RRQKLIEETPSPILNAEIRVKVGKIAVDLARSAGYFSVGTVEFLLDKDKKFYFMEMNTRI 292 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELAL 351 + + +G+ DL+ I +A+ Sbjct: 293 QVEHT----ITEEVTGI---DLVKEQIHVAM 316 >ref|NP_171808.1| (NC_003070) putative 3-methylcrotonyl-CoA carboxylase [Arabidopsis thaliana] gb|AAL50065.1| (AY070723) At1g03090/F10O3_8 [Arabidopsis thaliana] Length = 734 Score = 205 bits (523), Expect = 4e-52 Identities = 57/331 (17%), Positives = 113/331 (33%), Gaps = 26/331 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQ-L 87 + +R ++ + + + + Y D H+ A + + + Sbjct: 40 KILVANRGEIACRIMRTAKRLGIQTVAVYSDADRDSLHVKSADEAVRIGPPSARLSYLSG 99 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + I P +G L E + + L F+G A DK +KR+ Sbjct: 100 VTIMEAAARTGAQAIHPG-YGFLSESSDFAQLCEDSGLTFIGPPASAIRDMGDKSASKRI 158 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + AG+ + P + ++ K+G P+ +KP + G G+ V S + +A + Sbjct: 159 MGAAGVPLVPGYHGHEQDIDHMKSE--AEKIGYPIIIKPTHGGGGKGMRIVQSGKDFADS 216 Query: 208 V------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A + +++E+ I + R IE + G+ + E K Sbjct: 217 FLGAQREAAASFGVNTILLEKYITRPRHIEVQIFGDKHGNVLHLYER--DCSVQRRHQKI 274 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEINTL 319 I+E I+ + + AV A + +G V+ + ++ E+NT Sbjct: 275 IEE-----APAPNISEKFRANLGQAAVSAARAVGYYNAGTVEFIVDTESDQFYFMEMNTR 329 Query: 320 PGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + P G DL+ I +A Sbjct: 330 LQVEH----PVTEMIVG---QDLVEWQIRVA 353 >gb|AAB41852.1| (U69163) D-Alanine:D-Alanine ligase [Streptococcus gordonii] Length = 197 Score = 205 bits (523), Expect = 5e-52 Identities = 76/198 (38%), Positives = 121/198 (60%), Gaps = 1/198 (0%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 L V +P+VG ++L+S+ MDK TKR+L AG+ P++ + E+E KL Sbjct: 1 FLEVLKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAVVDGEDLEQKIQEIEEKL 60 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 P+F KP+N GSSVG+SK ++E+ ++DLAF++D +V+VEQG+ REIE +LGN + Sbjct: 61 SYPVFTKPSNMGSSVGISKSDNQEELRASLDLAFKYDSRVLVEQGVTAREIEVGLLGNTD 120 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 ++S GE+V FY Y KYID + +PA + + + +R A A++ +G G+ Sbjct: 121 VKSSLPGEVVKDVAFYDYQAKYIDNK-ITMAIPAQLPEGVVNTMRQNAETAFRAIGGLGL 179 Query: 299 ARVDVFLTPENEVVINEI 316 +R D F T + +V +NE+ Sbjct: 180 SRCDFFYTEDGQVFLNEL 197 >gb|AAA60989.1| (L29641) D-alanine-D-alanine ligase-related enzyme [Enterococcus casseliflavus] Length = 200 Score = 205 bits (523), Expect = 5e-52 Identities = 84/201 (41%), Positives = 124/201 (60%), Gaps = 4/201 (1%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRHNISFAEVE 175 L +P+VG+ VL SA MDK +TK +L+ AG+ P++ + + F + E Sbjct: 1 FLETIGMPYVGAGVLTSACGMDKIMTKYILQAAGIPQVPYVPVLKNAWKENPKKIFDQCE 60 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 L P+FVKPAN GSSVG+SK + E+ A+ A+ +D + IVEQGI+ REIE AVLG Sbjct: 61 GSLLYPMFVKPANMGSSVGISKAENREELQNALQEAYRYDTRAIVEQGIEAREIEVAVLG 120 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 N++ + + GEIV FY Y++KYID + ++ +PA I E K + A +AY LG Sbjct: 121 NEDVRTTMPGEIVKDVAFYDYNSKYID-NRIEMQIPAQIPEETQAKAQEFAKKAYTMLGG 179 Query: 296 AGMARVDVFLTPENEVVINEI 316 +G++R D FLT +NE+ +NE+ Sbjct: 180 SGLSRCDFFLTNKNELFLNEL 200 >ref|NP_224391.1| (NC_000922) Biotin Carboxylase [Chlamydophila pneumoniae CWL029] pir||E72110 biotin carboxylase - Chlamydophila pneumoniae (strain CWL029) gb|AAD18335.1| (AE001604) Biotin Carboxylase [Chlamydophila pneumoniae CWL029] Length = 454 Score = 205 bits (522), Expect = 5e-52 Identities = 57/331 (17%), Positives = 119/331 (35%), Gaps = 25/331 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ + I +S + Y L + H+ L A + + + I Sbjct: 3 KVLIANRGEIAVRIIRACHDLGLSTVAVYSLADQEALHVLLADEAICIGEPQAAKSYLKI 62 Query: 89 -DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + + D + P +G L E+ + + L F+G + A DK K L Sbjct: 63 SNILAACEITGADAVHPG-YGFLSENANFASICESCGLTFIGPSSESIAMMGDKIAAKSL 121 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + + P + ++ K+G P+ +K G G+ V ++++ A Sbjct: 122 AKKIKCPVIPGSEGIIEDESEG--LKIAEKIGFPIVIKAVAGGGGRGIRIVKEKDEFYRA 179 Query: 208 VDLAFEF------DHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A + V +E+ I+ R +E V+G+ + GE + Sbjct: 180 FSAARAEAEAGFNNPNVYIEKFIENPRHLEIQVIGDTHGNYVHLGER-------DCTIQR 232 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 + + + EI K+ +AV ++ G + V+ L + + E+NT Sbjct: 233 RRQKLIEETPSPILNAEIRVKVGKVAVDLARSAGYFSVGTVEFLLDKDKKFYFMEMNTRI 292 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELAL 351 + + +G+ DL+ I +A+ Sbjct: 293 QVEHT----ITEEVTGI---DLVKEQIHVAM 316 >ref|NP_219627.1| (NC_000117) Biotin Carboxylase [Chlamydia trachomatis] pir||H71553 probable biotin carboxylase - Chlamydia trachomatis (serotype D, strain UW3/Cx) gb|AAC67715.1| (AE001286) Biotin Carboxylase [Chlamydia trachomatis] Length = 457 Score = 205 bits (522), Expect = 6e-52 Identities = 54/319 (16%), Positives = 113/319 (34%), Gaps = 22/319 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ + I ++ + Y + + H+ L A + + + I Sbjct: 3 KVLIANRGEIAIRIIRACHDLGLATVAVYSMADQEALHVLLADEAVCIGEAQAAKSYLKI 62 Query: 89 -DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + + VD + P +G L E+ + + L F+G + A DK K+L Sbjct: 63 ANILAACEITGVDAVHPG-YGFLSENANFASICESCGLTFIGPSAESIATMGDKVAAKQL 121 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + + P + + K+G P+ +K G G+ V ++++ A Sbjct: 122 AKKIKCPVIPGSEGVVKDEVEGI--RIAEKIGFPIVIKAVAGGGGRGIRIVREKDEFYRA 179 Query: 208 VDLAFEF------DHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A + V +E+ I+ R +E V+G+ + GE T Sbjct: 180 FTAARAEAEAGFNNPDVYIEKFIENPRHLEVQVIGDKHGNYVYLGERDCTVQ-------R 232 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 + + + PE+ K+ +AV ++ G + V+ L E E+NT Sbjct: 233 RRQKLIEETPSPILTPEMRAKVGKVAVDLARSAGYFSVGTVEFLLDKEKRFYFMEMNTRI 292 Query: 321 GFTNISMYPKLWQASGLGY 339 + + +G+ Sbjct: 293 QVEHT----ITEEVTGIDL 307 >pir||T44813 biotin carboxylase (EC 6.3.4.14) yngH [imported] - Bacillus subtilis gb|AAF08802.1|AF184956_9 (AF184956) YngH [Bacillus subtilis] Length = 444 Score = 205 bits (522), Expect = 6e-52 Identities = 56/334 (16%), Positives = 120/334 (35%), Gaps = 33/334 (9%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV-PGKHEHQL 87 + +R ++ + I + + + Y D H A + + + + Sbjct: 4 KVLIANRGEIAMRIIRTCSRLGIKTVAVYSEADRDAPHTKAATEAYLIGESRVSESYLNI 63 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 D I P +G L E+ + N+ F+G A K ++ Sbjct: 64 ERIIETAKKANADAIHPG-YGLLSENSRFAERCKQENIVFIGPAPDIIAKMGSKIEARKA 122 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + AG+ + P ++ + + S++G P+ +K + G +G+ V +EE A Sbjct: 123 MEAAGVPVVPGVSESLGDIQEAC--RTASQIGYPVMLKASAGGGGIGMQLVQNEEALRKA 180 Query: 208 VD------LAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 + F D + +E+ I+ R IE +L + + ++ Sbjct: 181 YEGNKKRAADFFGDGSMYIEKVIEHARHIEVQLLADHFG-----------HTIHLFERDC 229 Query: 261 IDEDGAKVVVPAA----IAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEI 316 + + V+ A + ++ KI AV+A + +G ++ + P E+ Sbjct: 230 SVQRRHQKVIEEAPSPFLDDKLRMKIGQTAVKAAKAIGYTNAGTIEFLVDPNQNFYFLEM 289 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 NT + P + +GL DL+ + + +A Sbjct: 290 NTRLQVEH----PVTEEITGL---DLVEQQLRIA 316 >gb|AAA60988.1| (L29640) D-alanine-D-alanine ligase-related enzyme [Enterococcus flavescens] Length = 200 Score = 205 bits (521), Expect = 7e-52 Identities = 83/201 (41%), Positives = 124/201 (61%), Gaps = 4/201 (1%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRHNISFAEVE 175 L +P+VG+ VL SA MDK +TK +L+ AG+ P++ + + F + E Sbjct: 1 FLETIGMPYVGAGVLTSACGMDKIMTKYILQAAGIPQVPYVPVLKNAWKENPKKIFDQCE 60 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 L P+FVKPAN GSSVG+SK + ++ A+ A+ +D + IVEQGI+ REIE AVLG Sbjct: 61 GSLLYPMFVKPANMGSSVGISKAENRQELQNALQEAYRYDTRAIVEQGIEAREIEVAVLG 120 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 N++ + + GEIV FY Y++KYID + ++ +PA I E K + A +AY LG Sbjct: 121 NEDVRTTMPGEIVKDVAFYDYNSKYID-NRIEMQIPAQIPEETQAKAQEFAKKAYTMLGG 179 Query: 296 AGMARVDVFLTPENEVVINEI 316 +G++R D FLT +NE+ +NE+ Sbjct: 180 SGLSRCDFFLTNKNELFLNEL 200 >gb|AAB17900.1| (U39775) D-alanine:D-alanine ligase [Enterococcus pseudoavium] Length = 200 Score = 204 bits (520), Expect = 9e-52 Identities = 80/201 (39%), Positives = 123/201 (60%), Gaps = 4/201 (1%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRHNISFAEVE 175 L ++P+VG+ V+ SA MDK +TK +L+ AG+ P++ + + F + E Sbjct: 1 FLETLDMPYVGAGVMTSACAMDKIMTKYILQAAGIPQVPYVPVLKNQWKENPKQVFDKCE 60 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 L P+F+KPAN GSSVG+S+ + E+ A+ A+ +D + +VEQGI REIE AVLG Sbjct: 61 GTLLYPMFIKPANMGSSVGISRAENREELQNALKEAYRYDSRALVEQGIDAREIEVAVLG 120 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 ND+ + + GE+V FY Y+ KYID + ++ +PA + E+ K R A AY LG Sbjct: 121 NDDVRTTLPGEVVKEVAFYDYNAKYID-NTIQMAIPAEVPKEVMQKAREYAKLAYTMLGG 179 Query: 296 AGMARVDVFLTPENEVVINEI 316 +G++R D FLT +NE+ +NE+ Sbjct: 180 SGLSRCDFFLTNKNELFLNEL 200 >ref|NP_253444.1| (NC_002516) carbamoylphosphate synthetase large subunit [Pseudomonas aeruginosa] sp|P38100|CARB_PSEAE CARBAMOYL-PHOSPHATE SYNTHASE LARGE CHAIN (CARBAMOYL-PHOSPHATE SYNTHETASE AMMONIA CHAIN) pir||E83051 carbamoylphosphate synthetase large subunit PA4756 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAB39252.1| (U81259) carbamoylphosphate synthetase large subunit [Pseudomonas aeruginosa] gb|AAG08142.1|AE004889_5 (AE004889) carbamoylphosphate synthetase large subunit [Pseudomonas aeruginosa] Length = 1073 Score = 204 bits (520), Expect = 1e-51 Identities = 55/356 (15%), Positives = 121/356 (33%), Gaps = 52/356 (14%) Query: 2 EKLRVGIVFGGKSA-----EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 + ++ I+ GG + E + A A+ + ++ +++ + + D S Sbjct: 557 SREKIMILGGGPNRIGQGIEFDYCCVHA---ALAMREDGYETIMVNCNPETVSTDYDTS- 612 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L V + +I GQ L Sbjct: 613 ------DRLYFEPVTLEDVLEIVRVEQPKGVIVQYGGQTPLK-----------------L 649 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L A +P +G+ A D++ +++++ L T + + + Sbjct: 650 CRALEEAGVPIIGTSPDAIDRAEDRERFQQMVQRLNLRQPANATARSEDEALAASKAI-- 707 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEF--DHKVIVEQGIK-GREIEC-A 232 G PL V+P+ + V EE+ + A + D V+++ + E++ A Sbjct: 708 --GYPLVVRPSYVLGGRAMEIVYQEEELKRYMREAVQVSNDSPVLLDHFLNCAIEVDIDA 765 Query: 233 VLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 V + + + + ++ D A + P ++ I D+IR + Sbjct: 766 VCDGEIVVIGAIMQHIEQAGVHS-------GDSACSLPPYSLPQHIQDEIREQVKKMALE 818 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 LG G+ V + + E+ + + E+N T P + + G + R++ Sbjct: 819 LGVVGLMNVQMAVQGED-IFVIEVNPRASRT----VPFVSKCVGESLAKVAARVMA 869 Score = 160 bits (406), Expect = 1e-38 Identities = 48/358 (13%), Positives = 118/358 (32%), Gaps = 53/358 (14%) Query: 4 LRVGIVFG------GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNY 57 ++ ++ G G++ E + S A+ + + V+L+ Sbjct: 7 IKSILILGAGPIVIGQACEFDYS---GAQACKALREEGYRVILV---------------- 47 Query: 58 LLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL- 116 +PA I P+ + + D + P + G + +L Sbjct: 48 ---NSNPATIMTDPAMADATYIEPIKWATVA---KIIEKERPDALLPTMGGQTALNCALD 101 Query: 117 ---QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAE 173 G+L + +G++ D+ + ++D GL Sbjct: 102 LERHGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKDIGLACPRSGIAHSMEEAY----G 157 Query: 174 VESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVD--LAFEFDHKVIVEQGIKG-REIE 230 V ++G P ++P+ G + E++ L +++++++ + G +E E Sbjct: 158 VLEQVGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTNELLIDESLIGWKEYE 217 Query: 231 CAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 V+ + IV + + + + D V + + +R ++ Sbjct: 218 MEVVRDKKDNCI----IVCSIENFDPMGVHT-GDSITVAPAQTLTDKEYQIMRNASLAVL 272 Query: 291 QTLGCA-GMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 + +G G + V + P +V+ E+N ++ +A+G + +L Sbjct: 273 REIGVETGGSNVQFGICPNTGRMVVIEMNPRVSRSSA----LASKATGFPIAKIAAKL 326 >dbj|BAA12072.1| (D83706) pyruvate carboxylase [Geobacillus stearothermophilus] Length = 1147 Score = 204 bits (519), Expect = 1e-51 Identities = 53/330 (16%), Positives = 105/330 (31%), Gaps = 32/330 (9%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ--VPGK 82 + I + +R ++ + + + + Y H A + + P + Sbjct: 4 RRIRKVLVANRGEIAIRVFRACTELGIRTVAIYSKEDVGSYHRYKADEAYLVGEGKKPIE 63 Query: 83 HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKD 142 + VD I P +G E+ R + F G + DK Sbjct: 64 AYLDIEGIIEIAKAHDVDAIHPG-YGFFSENIQFAKRCREEGIIFFGPNENHLDMFGDKV 122 Query: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEE 202 + +AG+ + P G P+ +K A G G+ V S+ Sbjct: 123 KARHAAVNAGIPVIPGSDGPVDG--LEDVVAFAEAHGYPIIIKAALGGGGRGMRFVRSKS 180 Query: 203 QYAIAVDLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYA 255 + A + A +V VE+ I+ + IE +LG+ + Sbjct: 181 EVKEAFERAKSEAKAAFGSDEVYVEKLIENPKHIEVQILGDYEGNI-----------VHL 229 Query: 256 YDTKYIDEDGAKVVVPAA----IAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEV 311 Y+ + + VV A ++ E+ +I AVQ +++G V+ ++ + E Sbjct: 230 YERDCSVQRRHQKVVEVAPSVSLSDELRQRICEAAVQLMRSVGYVNAGTVEFLVSGD-EF 288 Query: 312 VINEINTLPGFTNISMYPKLWQASGLGYTD 341 E+N + +G+ Sbjct: 289 YFIEVNPRIQVEHT----ITEMITGIDIVQ 314 >ref|NP_277017.1| (NC_000916) biotin carboxylase [Methanothermobacter thermautotrophicus] sp|O27939|PYCA_METTH PYRUVATE CARBOXYLASE SUBUNIT A (PYRUVIC CARBOXYLASE A) pir||A69123 biotin carboxylase - Methanobacterium thermoautotrophicum (strain Delta H) gb|AAB86377.1| (AE000942) biotin carboxylase [Methanothermobacter thermautotrophicus] Length = 491 Score = 204 bits (519), Expect = 1e-51 Identities = 56/334 (16%), Positives = 120/334 (35%), Gaps = 39/334 (11%) Query: 24 AKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKH 83 A ++ A + V + + + ++ PA P + Sbjct: 14 AIRVMRACRELGIKSVAVYSEADKNALFTRYADEAYEIGKPA--------------PSQS 59 Query: 84 EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 ++ + I P +G L E+ L + +G A DK Sbjct: 60 YLRIDRILEVAEKAGAEAIHPG-YGFLAENPRLGEECEKQGIKLIGPKGSVIEAMGDKIT 118 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 +K+L++ AG+ + P ++ A + +G P+ +K + G +G+ V E++ Sbjct: 119 SKKLMKKAGVPVIPGTDQGVSDPDEA--ARIADSIGYPVIIKASAGGGGIGMRAVYEEDE 176 Query: 204 YAIAVD------LAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 A++ + D V +E+ ++ R IE V+ +++ + Sbjct: 177 LIRAMESTQSVAASAFGDPTVYIEKYLERPRHIEFQVMADESGNVIHLADR--ECSIQRR 234 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEI 316 K I+E + PE+ +++ + AV+A + +G V+ + + E+ Sbjct: 235 HQKLIEE-----APSPIMTPELRERMGSAAVKAAEYIGYENAGTVEFLYS-NGDFYFLEM 288 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 NT + P +G+ DL+ I +A Sbjct: 289 NTRIQVEH----PITEVITGV---DLVKEQIRVA 315 >dbj|BAB16297.1| (AB039884) acetyl-CoA carboxylase biotin carboxylase subunit [Myxococcus xanthus] Length = 573 Score = 203 bits (518), Expect = 1e-51 Identities = 65/335 (19%), Positives = 114/335 (33%), Gaps = 27/335 (8%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHE 84 + + +R ++ + I + Q AD A L E Sbjct: 2 ERFKKVLIANRGEIAVRVI-RTCQRLGYSTVAVFSEADRGAPHVLAADEAVAIGPSPAKE 60 Query: 85 HQLID--AQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKD 142 L+ + I P +G L E+ R A L F+G + A +K Sbjct: 61 SYLVIGKILEAAKTSGAEAIHPG-YGFLSENADFARACRDAGLVFIGPEAEAITLMGNKR 119 Query: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEE 202 + AG+ P + + + A ++G PL VK A G G+ V Sbjct: 120 QANVRMIAAGVPCIPGYEASDLDD--EALAVEGERIGFPLMVKAAAGGGGRGMRLVHEAS 177 Query: 203 QYAIAVDLAFE------FDHKVIVEQG-IKGREIECAVLGNDNPQASTCGEIVLTSDFYA 255 Q A+ A ++I+E+ I R +E V + + GE Sbjct: 178 QLRAALRAARSEATNAFGSGELILEKAVIDARHVEVQVFADTHGNVVHLGER--DCSVQR 235 Query: 256 YDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINE 315 K ++E A++P + ++ +AV A + +G G ++ L P + E Sbjct: 236 RHQKIVEES-----PSPAVSPALRARMGEVAVAAARAIGYRGAGTIEFLLAPSGDFYFME 290 Query: 316 INTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 +NT + P +GL DL+ + +A Sbjct: 291 MNTRLQVEH----PVTELITGL---DLVEWQLRVA 318 >ref|NP_404125.1| (NC_003143) carbamoyl-phosphate synthase large chain [Yersinia pestis] emb|CAC89339.1| (AJ414143) carbamoyl-phosphate synthase large chain [Yersinia pestis] Length = 1077 Score = 203 bits (518), Expect = 2e-51 Identities = 56/353 (15%), Positives = 116/353 (31%), Gaps = 52/353 (14%) Query: 2 EKLRVGIVFGGKSA-----EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 ++ +V ++ GG + E + A A+ + ++ +++ + + D S Sbjct: 558 DRPKVMVLGGGPNRIGQGIEFDYCCVHA---SLALREDGYETIMVNCNPETVSTDYDTS- 613 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L V + +I GQ L Sbjct: 614 ------DRLYFESVTLEDVLEIVRIEKPQGVIVQYGGQTPLK-----------------L 650 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L A +P +G+ A D++ ++ + GL T+ + + Sbjct: 651 ARELEAAGVPIIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIEQAVEK----AT 706 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEF--DHKVIVEQGI-KGREIECAV 233 LG PL V+P+ + V E A D V++++ + E++ Sbjct: 707 GLGYPLVVRPSYVLGGRAMEIVYDEIDLRRYFQNAVSVSNDAPVLLDRFLDDAVEVDVDA 766 Query: 234 LGNDN-PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + + E + + ++ D A + ++ EI D +R + Sbjct: 767 ICDGERVLIGGIMEHIEQAGVHS-------GDSACSLPAYTLSKEIQDVMRQQVEKLAFE 819 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITR 345 L G+ V + NEV + E+N T P + +A+G+ + R Sbjct: 820 LCVRGLMNVQFAV-KNNEVYLIEVNPRAART----VPFVSKATGMPLAKIAAR 867 Score = 166 bits (421), Expect = 3e-40 Identities = 48/358 (13%), Positives = 118/358 (32%), Gaps = 53/358 (14%) Query: 4 LRVGIVFG------GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNY 57 ++ ++ G G++ E + S A+ + + V+L+ Sbjct: 7 IKSILILGAGPIVIGQACEFDYS---GAQACKALREEGYRVILV---------------- 47 Query: 58 LLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL- 116 + A I P + H + D + P + G + +L Sbjct: 48 ---NSNLATIMTDPEMADATYIEPIHW---EVVRKIIEKERPDAVLPTMGGQTALNCALE 101 Query: 117 ---QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAE 173 QG+L + +G+ A D+ ++ GL+ A Sbjct: 102 LERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGIAHNMEEA----LA 157 Query: 174 VESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKG-REIE 230 V + +G P ++P+ G + E++ + + ++++++ + G +E E Sbjct: 158 VAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDESLIGWKEYE 217 Query: 231 CAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 V+ + N IV + + + + D V + + +R ++ Sbjct: 218 MEVVRDKNDNCI----IVCSIENFDAMGIHT-GDSITVAPAQTLTDKEYQIMRNASMAVL 272 Query: 291 QTLGCA-GMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 + +G G + V + +++ E+N ++ +A+G + +L Sbjct: 273 REIGVETGGSNVQFSVNPKNGRLIVIEMNPRVSRSSA----LASKATGFPIAKIAAKL 326 >gb|AAA24785.1| (L15304) vanB2 ORF [Enterococcus faecalis] Length = 210 Score = 203 bits (517), Expect = 2e-51 Identities = 80/216 (37%), Positives = 130/216 (60%), Gaps = 10/216 (4%) Query: 112 EDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISF 171 EDG +QG+ ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ Sbjct: 1 EDGCIQGLFELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPE--- 57 Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 L P+FVKPA GSS GV+KV E+ A++ A ++D K+++EQ I G E+ C Sbjct: 58 ---AGALTYPVFVKPARSGSSFGVTKVNGTEELNAAIEAAGQYDGKILIEQAISGCEVGC 114 Query: 232 AVLGND-NPQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAV 287 AV+GN+ + +I L+ + + E G++ + VPA I E ++++ A Sbjct: 115 AVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQETAK 174 Query: 288 QAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFT 323 + Y+ LGC G+ARVD+FL + +V+NE+NTLPGFT Sbjct: 175 KVYRVLGCRGLARVDLFLQEDGGIVLNEVNTLPGFT 210 >gb|AAC16915.1| (U91914) D-alanine:D-alanine ligase [Streptococcus constellatus] Length = 197 Score = 203 bits (517), Expect = 2e-51 Identities = 76/198 (38%), Positives = 125/198 (62%), Gaps = 1/198 (0%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 L V +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE+ L Sbjct: 1 FLEVLKMPYVGCNILSSSVAMDKITTKRVLASAGIPQVPYVAVIEGENIDEKIAEVEANL 60 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 P+F KP+N GSSVG+SK ++++ A++LAF++D +V++EQG+ REIE +LGN+ Sbjct: 61 TYPVFTKPSNMGSSVGISKSENQDELRSALELAFKYDSRVLIEQGVNAREIEVGLLGNEG 120 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 ++S GE+V FY Y+ KYID + +PA ++ ++ +R A +A+ +G G+ Sbjct: 121 AKSSWPGEVVKDVAFYDYEAKYIDNK-ITMDIPAKLSEDVIVTMRQYAEKAFHAIGGVGL 179 Query: 299 ARVDVFLTPENEVVINEI 316 AR D F T + E+ +NE+ Sbjct: 180 ARCDFFYTDKGEIFLNEL 197 >ref|NP_241998.1| (NC_002570) biotin carboxylase [Bacillus halodurans] dbj|BAB04851.1| (AP001511) biotin carboxylase [Bacillus halodurans] Length = 452 Score = 203 bits (516), Expect = 3e-51 Identities = 53/325 (16%), Positives = 118/325 (36%), Gaps = 30/325 (9%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQ-L 87 + +R ++ + I + ++ + Y D H+ A + + P + + Sbjct: 4 KVLIANRGEIAVRIIRTCQKLNIRTVAIYSEADVDSLHVKHADEAFLIGKPPVAESYLKV 63 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 VD I P +G L E+ A + F+G K + Sbjct: 64 DTILEVAKQAGVDAIHPG-YGLLSENARFARACVEAGISFIGPSPEVIERMGSKIAARTA 122 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 ++ AG+ + P + A+ + K G P+ +K + G +G+ V ++E+ A Sbjct: 123 MQTAGVPVIPGSDVALADEEEAV--HLARKFGYPVMLKASAGGGGIGMQLVRNDEEMRKA 180 Query: 208 V------DLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 +F D + +E+ ++ R IE + + + + ++ Sbjct: 181 FAGNQKRATSFFGDGTMFLEKAVENPRHIEVQIAADHHGHV-----------VHLWERDC 229 Query: 261 IDEDGAKVVVPAAIAP----EINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEI 316 + + VV A +P + +KI +AV+A + + + V+ + E + E+ Sbjct: 230 SIQRRHQKVVEEAPSPFVDEALREKIGQLAVKAAKAIDYRNLGTVECLVDGEKNIYFLEM 289 Query: 317 NTLPGFTNISMYPKLWQASGLGYTD 341 NT + P + +G+ + Sbjct: 290 NTRLQVEH----PVTEEITGIDLVE 310 >ref|NP_372050.1| (NC_002758) acetyl-CoA carboxylase [Staphylococcus aureus subsp. aureus Mu50] ref|NP_374640.1| (NC_002745) acetyl-CoA carboxylase (biotin carboxylase subunit) accC [Staphylococcus aureus subsp. aureus N315] dbj|BAB42619.1| (AP003134) acetyl-CoA carboxylase accC [Staphylococcus aureus subsp. aureus N315] dbj|BAB57688.1| (AP003362) acetyl-CoA carboxylase [Staphylococcus aureus subsp. aureus Mu50] Length = 451 Score = 202 bits (515), Expect = 4e-51 Identities = 48/323 (14%), Positives = 104/323 (31%), Gaps = 23/323 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ + I + + Y D H + A + K + I Sbjct: 3 KVLIANRGEIAVRIIRACRDLGIQTVAIYSEGDKDALHTQIADEAYCVGPTLSKDSYLNI 62 Query: 89 D-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + D + P +G L E+ + L F+G + KDV K Sbjct: 63 PNILSIATSTGCDGVHPG-YGFLAENADFAELCEACQLKFIGPSYQSIQKMGIKDVAKAE 121 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + A + + P + ++ K+G P+ +K G G+ E++ Sbjct: 122 MIKANVPVVPGSDGLMKDVSEA--KKIAKKIGYPVIIKATAGGGGKGIRVARDEKELETG 179 Query: 208 VDLAFE------FDHKVIVEQGIKG-REIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 + + + + +E+ I+ R IE ++G+ GE + Sbjct: 180 FRMTEQEAQTAFGNGGLYMEKFIENFRHIEIQIVGDSYGNVIHLGER-------DCTIQR 232 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEINTL 319 + + + E ++ AV+A + + ++ +N+ E+NT Sbjct: 233 RMQKLVEEAPSPILDDETRREMGNAAVRAAKAVNYENAGTIEFIYDLNDNKFYFMEMNTR 292 Query: 320 PGFTNISMYPKLWQASGLGYTDL 342 + P +G+ L Sbjct: 293 IQVEH----PVTEMVTGIDLVKL 311 >gb|AAF37343.1|AF170804_1 (AF170804) D-alanine:D-alanine ligase [Enterococcus durans] Length = 200 Score = 202 bits (515), Expect = 4e-51 Identities = 82/201 (40%), Positives = 122/201 (59%), Gaps = 4/201 (1%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRHNISFAEVE 175 L NLP+VG+ VL SA MDK +TK +L+ G+ P++ + + F + E Sbjct: 1 FLETLNLPYVGAGVLTSACAMDKIMTKYILQAGGVPQVPYVPVLKNQWKENPKKVFDQCE 60 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 L P+FVKPAN GS VG+SK + E+ A+ A+++D + IVEQGI+ REIE AVLG Sbjct: 61 GSLLYPMFVKPANMGSGVGISKAENREELQNALRTAYQYDSRAIVEQGIEAREIEVAVLG 120 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 N++ + + GE+V FY YD KYI+ ++ +PA + E+ K + A AY LG Sbjct: 121 NEDVRTTLPGEVVKDVAFYDYDAKYINNK-IEMQIPAEVPEEVYQKAQEYAKLAYTMLGG 179 Query: 296 AGMARVDVFLTPENEVVINEI 316 +G++R D FLT +NE+ +NE+ Sbjct: 180 SGLSRCDFFLTNKNELFLNEL 200 >ref|NP_102581.1| (NC_002678) propionyl-CoA carboxylase alpha chain precursor [Mesorhizobium loti] dbj|BAB48367.1| (AP002996) propionyl-CoA carboxylase alpha chain precursor [Mesorhizobium loti] Length = 670 Score = 202 bits (515), Expect = 4e-51 Identities = 52/330 (15%), Positives = 114/330 (33%), Gaps = 25/330 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ I + ++ + Y D H+ + A + P + + Sbjct: 4 KILIANRGEIACRVIKTARKMGIATVAVYSDADRDAVHVEMADEAVHIGPSPAAQSYLVP 63 Query: 89 DAQNGQPLP-TVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + + P +G L E + L + F+G A A DK +K+ Sbjct: 64 EKIIAACKETGAQAVHPG-YGFLSERAAFCEALEKEGIVFIGPKPKAIKAMGDKIESKKF 122 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 A ++ P N + ++ ++G P+ +K + G G+ ++ + Sbjct: 123 ANAAKVSTVPGWLGVIENADHA--EKIAGEIGYPVMIKASAGGGGKGMRIAWNQSEVRDG 180 Query: 208 VDLAFE------FDHKVIVEQG-IKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 D A D +V +E+ + R IE VL + + A GE + Sbjct: 181 FDRARSEAKSSFGDDRVFIEKFVVDPRHIEIQVLADAHGNALYLGERECSIQ-------R 233 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++ A+ + + + +V + + V+ + + E+NT Sbjct: 234 RNQKVAEEAPSPFLDAKTRKAMGEQSVALARAVDYQSAGTVEFIVDKDKNFYFLEMNTRL 293 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELA 350 + P +G+ DL+ ++I +A Sbjct: 294 QVEH----PVTELVTGI---DLVEQMIRVA 316 >gb|AAK28428.1|AF251259_1 (AF251259) D-alanine-D-X ligase VanD4 [Enterococcus faecium] Length = 210 Score = 202 bits (514), Expect = 5e-51 Identities = 79/216 (36%), Positives = 129/216 (59%), Gaps = 10/216 (4%) Query: 112 EDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISF 171 EDG +QG+L ++ +P+VG D+ +S CMDK + ++++AG+ + F L + + Sbjct: 1 EDGCIQGLLELSGIPYVGCDIQSSVICMDKSLAYMVVKNAGIEVPGFRVLQKGDSLE--- 57 Query: 172 AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIEC 231 L P+FVKPA GSS GV+KV E+ AV A ++D K++VE+ + G E+ C Sbjct: 58 ---AETLSYPVFVKPARSGSSFGVNKVCRAEELQAAVTEAGKYDSKILVEEAVSGSEVGC 114 Query: 232 AVLGND-NPQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAV 287 A+LGN + +I L F+ + E G++ + VPAA+ E+ ++I+ A Sbjct: 115 AILGNGNDLITGEVDQIELKHGFFKIHQEAQPEKGSENAVIRVPAALPDEVREQIQETAK 174 Query: 288 QAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFT 323 + Y+ LGC G+AR+D+FL + +V+NE+NT+PGFT Sbjct: 175 KIYRVLGCRGLARIDLFLREDGSIVLNEVNTMPGFT 210 >gb|AAB41853.1| (U69164) D-Alanine:D-Alanine ligase [Streptococcus mitis] Length = 197 Score = 202 bits (513), Expect = 6e-51 Identities = 78/198 (39%), Positives = 123/198 (61%), Gaps = 1/198 (0%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 L V +P+VG ++L+S+ MDK TKR+L G+ P++ + + AEVE KL Sbjct: 1 FLEVLKMPYVGCNILSSSLAMDKITTKRVLESVGIAQVPYVAIVEGDDMTAKIAEVEEKL 60 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 P+F KP+N GSSVG+SK ++E+ A+ LAF++D +V+VEQG+ REIE +LGN + Sbjct: 61 TYPVFTKPSNMGSSVGISKSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVGLLGNYD 120 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 +++ GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G+ Sbjct: 121 VKSTLPGEVVKDVAFYDYDAKYIDNK-ITMDIPAKISDDVVAVMRQNAETAFRAIGGLGL 179 Query: 299 ARVDVFLTPENEVVINEI 316 +R D F T + E+ +NE+ Sbjct: 180 SRCDFFYTDKGEIFLNEL 197 >gb|AAB62520.1| (U91913) D-alanine:D-alanine ligase [Streptococcus intermedius] Length = 197 Score = 202 bits (513), Expect = 7e-51 Identities = 73/198 (36%), Positives = 120/198 (59%), Gaps = 1/198 (0%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 L V +P+VG ++L+S+ MDK TKR+L AG+ P++ + AEVE L Sbjct: 1 FLEVLKMPYVGCNILSSSIAMDKITTKRVLASAGIPQVPYVAVVEGEDVEEKIAEVEVNL 60 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 P+F KP+N GSSVG+SK ++++ A+ LAF++D +V++EQG+ REIE + GN+ Sbjct: 61 TYPVFTKPSNMGSSVGISKSENKDELCSALKLAFKYDTRVLIEQGVNAREIEVGLFGNEG 120 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 ++S GE+V FY Y+ KYID + +PA ++ ++ + A +A+ +G G+ Sbjct: 121 AKSSLPGEVVKDVAFYDYEAKYIDNK-ITMDIPAKLSEDVIATMCDYAEKAFHAIGGVGL 179 Query: 299 ARVDVFLTPENEVVINEI 316 +R D F T + E+ +NE+ Sbjct: 180 SRCDFFYTNKGEIFLNEL 197 >gb|AAG45427.1|AF317651_4 (AF317651) pyruvate carboxylase ATP-binding subunit PYCA [Methanosarcina barkeri] Length = 493 Score = 201 bits (512), Expect = 9e-51 Identities = 53/331 (16%), Positives = 110/331 (33%), Gaps = 28/331 (8%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQL- 87 + +R + + + + + + AD A A L + L Sbjct: 4 KVLIANRGE-IAIRVMRACRELGISTVAVCSEADKNALFAKYADEAYLIGPAPSSQSYLN 62 Query: 88 -IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKR 146 + I P +G L E+ + F+G A K + Sbjct: 63 MEAILAVAKNTGAEAIHPG-YGFLSENPVFAKRCEEEGIVFIGPPSHVIAEMGSKIRARN 121 Query: 147 LLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAI 206 L+ AG+ + P + ++ ++G P+ +K + G +G+ V S +++A Sbjct: 122 LMVKAGVPVVPGTKDAVEDPVEAV--KIAEEIGYPVLIKASAGGGGIGMKVVNSSDEFAT 179 Query: 207 AVDLAFE------FDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTK 259 A+ + D V +E+ + + R IE +L + + K Sbjct: 180 ALSSTRQMAGSAFGDSSVFIEKYVEEPRHIEIQILADGYGNTIYLSDR--ECSIQRRHQK 237 Query: 260 YIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTL 319 I+E + PE+ K+ AV+ +T+G V+ + E+NT Sbjct: 238 LIEE-----APSPIMTPELRAKMGEAAVRVAKTIGYVNAGTVEFLYSK-GNFYFLEVNTR 291 Query: 320 PGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + +G+ D++ + +A Sbjct: 292 LQVEHG----ITEMVTGI---DIVREQLRIA 315 >gb|AAB41856.1| (U69167) D-Alanine:D-Alanine ligase [Streptococcus salivarius] Length = 197 Score = 201 bits (511), Expect = 1e-50 Identities = 77/198 (38%), Positives = 117/198 (58%), Gaps = 1/198 (0%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 L LP+VG++VL+S+ MDK +TK +L AG+ + + AE KL Sbjct: 1 FLETLKLPYVGTNVLSSSVAMDKIMTKHILEVAGVPQVAYTVFIEGEDLEAAVAETLEKL 60 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 P+FVKPAN GSSVG+SK +E + A+DLA ++D ++++EQG+ REIE +LGN Sbjct: 61 TFPVFVKPANMGSSVGISKAENEAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTT 120 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 + + GE+V FY Y KYID + +PA + E+ ++R A +A++ LG G+ Sbjct: 121 VKTTNPGEVVKDVAFYDYQAKYIDNK-ITMDIPAHVPAEVMTQMRVYAAKAFRALGGCGL 179 Query: 299 ARVDVFLTPENEVVINEI 316 AR D FLT + + +NE+ Sbjct: 180 ARCDFFLTEDGAIYLNEL 197 >gb|AAB62519.1| (U91912) D-alanine:D-alanine ligase [Streptococcus anginosus] Length = 197 Score = 201 bits (511), Expect = 1e-50 Identities = 74/198 (37%), Positives = 123/198 (61%), Gaps = 1/198 (0%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 L V +P+VG ++L+S+ MDK TKR+L AG+ P++ + + A VE+ L Sbjct: 1 FLEVLKMPYVGCNILSSSVAMDKITTKRVLASAGIPQVPYVAVIEGENIDEKIAAVEANL 60 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 P+F KP+N GSSVG+SK ++++ A++LAF++D +V++EQG+ REIE +LGN+ Sbjct: 61 TYPVFTKPSNMGSSVGISKSENQDELRSALELAFKYDSRVLIEQGVNAREIEVGLLGNEG 120 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 ++S GE+V FY Y+ KYID + +PA ++ ++ +R A + + +G G+ Sbjct: 121 AKSSLPGEVVKDVAFYDYEAKYIDNK-ITIDIPAKLSEDVIATMRQYAEKRFHAIGGVGL 179 Query: 299 ARVDVFLTPENEVVINEI 316 AR D F T + E+ +NE+ Sbjct: 180 ARCDFFYTDKGEIFLNEL 197 >ref|NP_296778.1| (NC_002620) acetyl-coenzyme A carboxylase, biotin carboxylase [Chlamydia muridarum] pir||D81708 acetyl-coenzyme A carboxylase, biotin carboxylase TC0400 [imported] - Chlamydia muridarum (strain Nigg) gb|AAF39257.1| (AE002306) acetyl-coenzyme A carboxylase, biotin carboxylase [Chlamydia muridarum] Length = 457 Score = 200 bits (510), Expect = 2e-50 Identities = 53/305 (17%), Positives = 107/305 (34%), Gaps = 18/305 (5%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ + I +S + Y + + H+ L A + + + I Sbjct: 3 KVLIANRGEIAVRIIRACHDLGLSTVAIYSVADQEALHVLLADEAVCIGEAQAAKSYLKI 62 Query: 89 -DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + + D + P +G L E+ + + L F+G + A DK K+L Sbjct: 63 ANILAACEITGADAVHPG-YGFLSENANFASICESCGLTFIGPSAESIATMGDKVAAKQL 121 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + + P + + K+G P+ +K G G+ V ++++ A Sbjct: 122 AKKIKCPVIPGSDGVVKDEVEGI--RIAEKIGFPIVIKAVAGGGGRGIRIVREKDEFYRA 179 Query: 208 VDLAFEF------DHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A + V +E+ I+ R +E V+G+ GE T Sbjct: 180 FTAARAEAESGFNNPDVYIEKFIENPRHLEVQVIGDKYGNYVYLGERDCTVQ-------R 232 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 + + + PE+ K+ +AV ++ G + V+ L E E+NT Sbjct: 233 RRQKLIEETPSPILTPEMRAKVGKVAVDLARSAGYFSVGTVEFLLDAEKRFYFMEMNTRI 292 Query: 321 GFTNI 325 + Sbjct: 293 QVEHT 297 >gb|AAB41855.1| (U69166) D-Alanine:D-Alanine ligase [Streptococcus oralis] Length = 197 Score = 200 bits (509), Expect = 2e-50 Identities = 78/198 (39%), Positives = 124/198 (62%), Gaps = 1/198 (0%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 L V +P+VG ++L+S+ MDK TKR+L G+ P++ + + AEVE KL Sbjct: 1 FLEVLKMPYVGCNILSSSLAMDKITTKRVLESVGIAQVPYVAIVEGDDVTAKIAEVEEKL 60 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 P+F KP+N GSSVG+SK ++E+ A++LAF++D +V+VEQG+ REIE +LGN + Sbjct: 61 TYPVFTKPSNMGSSVGISKSENQEELRQALELAFQYDSRVLVEQGVNAREIEVGLLGNYD 120 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 +++ GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G+ Sbjct: 121 VKSTLPGEVVKDVAFYDYDAKYIDNK-ITMDIPAKISDDVVAVMRHNAETAFRAIGGLGL 179 Query: 299 ARVDVFLTPENEVVINEI 316 +R D F T + E+ +NE+ Sbjct: 180 SRCDFFYTDKGEIFLNEL 197 >gb|AAF37344.1|AF170805_1 (AF170805) D-alanine:D-alanine ligase [Enterococcus malodoratus] Length = 200 Score = 200 bits (509), Expect = 2e-50 Identities = 81/201 (40%), Positives = 122/201 (60%), Gaps = 4/201 (1%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRHNISFAEVE 175 L ++P VG+ V+ SA MDK +TK +L+ AG+ P++ + + F + E Sbjct: 1 FLETLDMPDVGAGVVTSACAMDKIMTKYILQAAGIPQVPYVPVLKNQWKENPKQIFDKCE 60 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 L P+F+KPAN GSSVG+S+ + E+ A+ A+ +D + +VEQGI REIE AVLG Sbjct: 61 GTLLYPMFIKPANMGSSVGISRAENREELQNALQEAYRYDSRALVEQGIDAREIEVAVLG 120 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 ND+ + + GE+V FY Y+ KYID + ++ +PA I E+ K R A AY LG Sbjct: 121 NDDVRTTLPGEVVKEVAFYDYNAKYID-NTIQMAIPAEIPEEVMQKARDYAKLAYTMLGG 179 Query: 296 AGMARVDVFLTPENEVVINEI 316 +G++R D FLT +NE+ +NE+ Sbjct: 180 SGLSRCDFFLTNKNELFLNEL 200 >ref|NP_293843.1| (NC_001263) acetyl-CoA carboxylase, biotin carboxylase subunit [Deinococcus radiodurans] pir||B75558 acetyl-CoA carboxylase, biotin carboxylase subunit - Deinococcus radiodurans (strain R1) gb|AAF09707.1|AE001874_4 (AE001874) acetyl-CoA carboxylase, biotin carboxylase subunit [Deinococcus radiodurans] Length = 445 Score = 200 bits (509), Expect = 2e-50 Identities = 53/330 (16%), Positives = 115/330 (34%), Gaps = 27/330 (8%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ L I + + Y + + L + + + I Sbjct: 4 KILIANRGEIALRVIRTAREMGIQTVVVYSTADEKSLPVLLADESVCVGPPASNQSYLNI 63 Query: 89 D-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + + + I P +G + E+ M R + F+G + A K + + Sbjct: 64 PNILSAALMTGAEAIHPG-YGFMAENPDFAEMCREHGIVFIGPTPESMRALGSKAGGREI 122 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + + P + + ++G P+ +K + G G + ++E+ Sbjct: 123 AAQSNVPTVPGTGVL---ESVDAALLAAKQIGYPVLLKASAGGGGRGQKVIRTQEELQKG 179 Query: 208 VDLAFE------FDHKVIVEQGIKG-REIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 + A E D +I+E+ ++ R IE V+G+ GE + K Sbjct: 180 FNQAQEEARLYFGDPAIIMEKFLEEFRHIEVQVMGDGQGHVIHIGER--DCSIQRRNQKL 237 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 I+E P+ + + +I A V+ Q + AG ++ + + E+NT Sbjct: 238 IEE------APSTLPESLRQEILAAGVRLAQFVNYAGAGTLEFIMDRDGNYYFMEMNTRI 291 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELA 350 + ++ + DL+ IE+A Sbjct: 292 QVEHC--VSEM-----ISSLDLVRLQIEIA 314 >emb|CAB44435.1| (AJ242913) carbamoylphosphate synthase (large subunit) [Klebsiella aerogenes] Length = 481 Score = 200 bits (508), Expect = 2e-50 Identities = 55/350 (15%), Positives = 113/350 (31%), Gaps = 49/350 (14%) Query: 16 EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATS 75 E + A A+ + ++ +++ + + D S D + Sbjct: 1 EFDYCCVHA---SLALREDGYETIMVNCNPETVSTDYDTS-------DRLYFEPVTLEDV 50 Query: 76 LAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLAS 135 L V + +I GQ L L A +P +G+ A Sbjct: 51 LEIVHIEKPKGVIVQYGGQTPLK-----------------LARALEAAGVPVIGTSPDAI 93 Query: 136 AACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGV 195 D++ + + L T+T + ++G PL V+P+ + Sbjct: 94 DRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEK----AKEIGYPLVVRPSYVLGGRAM 149 Query: 196 SKVTSEEQYAIAVDLAFEF--DHKVIVEQGI-KGREIECAVLGNDN-PQASTCGEIVLTS 251 V E+ A D V++++ + E++ + + E + + Sbjct: 150 EIVYDEQDLRRYFQTAVSVSNDAPVLLDRFLDDAIEVDVDAICDGEMVLIGGIMEHIEQA 209 Query: 252 DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEV 311 + D A + ++ EI D +R + L G+ V + +NEV Sbjct: 210 GVH-------SGDSACSLPAYTLSKEIQDVMREQVQKLAFELQVRGLMNVQFAV-KDNEV 261 Query: 312 VINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALK 361 + E+N T P + +A+G+ + R++ A + A K Sbjct: 262 YLIEVNPRAART----VPFVSKATGVPLAKVAARVM--AGKTLAQQGVTK 305 >ref|NP_187496.1| (NC_003074) unknown protein [Arabidopsis thaliana] gb|AAF07838.1|AC010871_14 (AC010871) unknown protein [Arabidopsis thaliana] Length = 515 Score = 199 bits (507), Expect = 3e-50 Identities = 93/371 (25%), Positives = 147/371 (39%), Gaps = 37/371 (9%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 + LRVG++ GG SAE +SL SA++++D I +V ID + ++ N Sbjct: 76 KSLRVGLICGGPSAERGISLNSARSVLDHIQGDGINVSCYYIDPDLKAFAISSAQVYSNT 135 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 L A + + EH + VD++FP++HG GEDG +Q +L Sbjct: 136 PSDFDFKLESLAQGFSSLSELAEHLV---------SAVDIVFPVIHGRFGEDGGIQELLE 186 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITL--TRANRHNISFAEVESKLG 179 N+PFVG+ DK L++ G P + T ++ I+ +++L Sbjct: 187 SHNIPFVGTGSRECFRAFDKYEASLELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLD 246 Query: 180 L---PLFVKPANQGSSVGVSKVTSEEQ-YAIAVDLAFEF-DHKVIVEQGI-KGREIECAV 233 L + VKPA GSS+GV A +L E D +V+VE I E V Sbjct: 247 LEMGKVVVKPAKAGSSIGVKVAFGVNDSIKKATELILEGIDDRVVVEVFIEDAYEFTAIV 306 Query: 234 LGND-----NPQASTCGEIV---------LTSDFYAYDTKYIDEDGAKVVVPAAIAPEIN 279 L +P E+ + + Y KY+ P + Sbjct: 307 LDVGSGSVCHPVVLMPTEVQLQFHGIGDPKENAIFDYRRKYLPTQQVTYHTPPRFPIHVI 366 Query: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGY 339 IR A +Q LG AR+D + N N + + G S L+Q + Sbjct: 367 KSIREEASLIFQKLGLRDFARIDGWYLAPNS---NLSSPISGMEQTS---FLFQQASKVI 420 Query: 340 TDLITRLIELA 350 D++T +I + Sbjct: 421 KDIVTLMIIDS 431 >ref|NP_009767.1| (NC_001134) Urea amidolyase (contains urea carboxylase and allophanate hydrolase); Dur1,2p [Saccharomyces cerevisiae] sp|P32528|DUR1_YEAST UREA AMIDOLYASE [INCLUDES: UREA CARBOXYLASE ; ALLOPHANATE HYDROLASE ] pir||S46082 urea carboxylase (EC 6.3.4.6) - yeast (Saccharomyces cerevisiae) emb|CAA85172.1| (Z36077) ORF YBR208c [Saccharomyces cerevisiae] Length = 1835 Score = 199 bits (506), Expect = 4e-50 Identities = 62/335 (18%), Positives = 108/335 (31%), Gaps = 40/335 (11%) Query: 24 AKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKH 83 A I+ + K V + D ++ + P H Sbjct: 645 AVRIIKTLKKLGIRSVAVYSDPDKYSQHVTDADVSV----PLHGTTAAQTYL-------- 692 Query: 84 EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + + I P +G L E+ A + FVG K Sbjct: 693 --DMNKIIDAAKQTNAQAIIPG-YGFLSENADFSDACTSAGITFVGPSGDIIRGLGLKHS 749 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 +++ + AG+ + P L +V ++L P+ VK G +G+ KV SEE Sbjct: 750 ARQIAQKAGVPLVPGSLLIT---SVEEAKKVAAELEYPVMVKSTAGGGGIGLQKVDSEED 806 Query: 204 YAIAVD------LAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 + F D V +E+ I+ R +E ++G+ +A GE Sbjct: 807 IEHIFETVKHQGETFFGDAGVFLERFIENARHVEVQLMGDGFGKAIALGER--DCSLQRR 864 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTP-ENEVVINE 315 + K I+E + + +R A L V+ ++E E Sbjct: 865 NQKVIEE-----TPAPNLPEKTRLALRKAAESLGSLLNYKCAGTVEFIYDEKKDEFYFLE 919 Query: 316 INTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 +NT + P +GL DL+ +I +A Sbjct: 920 VNTRLQVEH----PITEMVTGL---DLVEWMIRIA 947 >ref|NP_223393.1| (NC_000921) D-ALANINE--D-ALANINE LIGASE [Helicobacter pylori J99] sp|Q9ZLA5|DDL_HELPJ D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||A71903 D-alanine--D-alanine ligase A homolog - Helicobacter pylori (strain J99) gb|AAD06259.1| (AE001499) D-ALANINE--D-ALANINE LIGASE [Helicobacter pylori J99] Length = 347 Score = 198 bits (505), Expect = 5e-50 Identities = 87/327 (26%), Positives = 146/327 (44%), Gaps = 30/327 (9%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 + ++FGG S EHE+S+ SA + + K R + +D+ +++ + SN Sbjct: 1 MEFCVLFGGASFEHEISIVSAIA-LKGVLKDRIK-YFIFLDENHYFYLIEESNM------ 52 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQN--------GQPLPTVDVIFPIVHGTLGEDGS 115 + AQ+ K LI N G + + ++ +VHG GEDG Sbjct: 53 --------HSKYFAQIKEKKLPPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGK 104 Query: 116 LQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVE 175 L +L + F+G V AS +K +TK +D G+ ++ L NR N + Sbjct: 105 LASLLEFYRIAFIGPRVEASVLSYNKYLTKLYAKDLGVKALDYVLLNEKNRANA-LDLIG 163 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVL 234 P VKP+N GSS+GV+ V E++ A+D AFE+ +V++E I+G +E A Sbjct: 164 --FNFPFIVKPSNAGSSLGVNVVKEEKELIYALDSAFEYSKEVLIEPFIQGVKEYNLAGC 221 Query: 235 GNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 + E +F + KY+D A ++ + ++++ + Y L Sbjct: 222 KIKKGFCFSYVEEPNKQEFLDFKQKYLDFSR-TKAPKANLSNALEEQLKENFKKLYNDLF 280 Query: 295 CAGMARVDVFLTPENEVVINEINTLPG 321 + R D F+ EV +NEIN +PG Sbjct: 281 DGAIIRCDFFVIEN-EVYLNEINPIPG 306 >ref|NP_283408.1| (NC_003116) putative acetyl-CoA carboxylase biotin carboxylase component [Neisseria meningitidis Z2491] pir||H81978 probable acetyl-CoA carboxylase (EC 6.4.1.2) biotin carboxylase chain NMA0596 [similarity] - Neisseria meningitidis (group A strain Z2491) emb|CAB83886.1| (AL162753) putative acetyl-CoA carboxylase biotin carboxylase component [Neisseria meningitidis Z2491] Length = 453 Score = 198 bits (505), Expect = 5e-50 Identities = 50/321 (15%), Positives = 106/321 (32%), Gaps = 22/321 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQ-L 87 + +R ++ L + + ++ + + D H+ L + + + + Sbjct: 4 KVLIANRGEIALRVLRACREMGIATVAVHSEADKDSLHVKLADESVCIGPAASAQSYLNV 63 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + D + P +G L E+ + + F+G DK K Sbjct: 64 PAIIAAAEVSCADAVHPG-YGFLAENADFAEQVEQSGFTFIGPKPDTIRLMGDKVSAKHA 122 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + AG+ P + ++ K+G P+ +K + G G+ V +E + Sbjct: 123 MIAAGVPCVPGSDGALPDDGEE-ILKIADKIGYPVIIKASGGGGGRGMRVVEKKEDLLQS 181 Query: 208 VDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 V++ A + V +E+ ++ R +E V+ +++ A E K Sbjct: 182 VEMTKAEAGAAFGNPMVYMERYLQRPRHVEIQVIADEHGNAVYLAER--DCSLQRRHQKV 239 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 I+E I + KI A + +G G + + E E+NT Sbjct: 240 IEE-----APAPFITEKERAKIGKACADACKRIGYRGAGTFEFLY-EDGEFFFIEMNTRV 293 Query: 321 GFTNISMYPKLWQASGLGYTD 341 + P +G+ Sbjct: 294 QVEH----PVTELITGVDIVQ 310 >ref|NP_070102.1| (NC_000917) carbamoyl-phosphate synthase, large (or ammonia) subunit (carB) [Archaeoglobus fulgidus] pir||A69409 carbamoyl-phosphate synthase (glutamine-hydrolyzing) (EC 6.3.5.5) large chain - Archaeoglobus fulgidus gb|AAB89970.1| (AE001016) carbamoyl-phosphate synthase, large (or ammonia) subunit (carB) [Archaeoglobus fulgidus] Length = 1076 Score = 198 bits (504), Expect = 7e-50 Identities = 47/354 (13%), Positives = 109/354 (30%), Gaps = 52/354 (14%) Query: 2 EKLRVGIVFGGKSA-----EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 E+ +V I+ G + E + A ++ ++ +++ + + D S Sbjct: 559 ERKKVMILGAGPNRIGQGIEFDYCCVHAVF---SLKDEGYETIMVNCNPETVSTDYDTS- 614 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + + + +I GQ + Sbjct: 615 ------DRLYFEPITHEDVMNIYENEQPEGVIVQFGGQTPLN-----------------I 651 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L + +G+ V + D++ LL + + Sbjct: 652 ARELEDSGARILGTSVDSIDIAEDRERFAELLERLNIPQPENGIAHSLEEAKE----IAR 707 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGI-KGREIECAV 233 K+G P+ V+P+ + V EE + A E +++++ + E+E Sbjct: 708 KIGFPVLVRPSYVLGGRAMEIVYDEETLERYITEALEVSPEKPILIDKFLEDAIEVEVDA 767 Query: 234 LGND-NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 L + E + + ++ D A V+ P ++ + I + Sbjct: 768 LCDGEEVVIGGIMEHIEEAGVHS-------GDSACVLPPVSLDEVTINTIVDYTRKLALA 820 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 L G+ + + + +V + E N T P + +A+G+ + +L Sbjct: 821 LNVVGLINIQYAV-KDGKVYVLEANPRASRT----VPFVSKATGIPLAKIAAKL 869 Score = 176 bits (447), Expect = 3e-43 Identities = 56/358 (15%), Positives = 121/358 (33%), Gaps = 56/358 (15%) Query: 5 RVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLL 59 ++ ++ G++AE + S A+ + ++VVL+ Sbjct: 9 KIMVIGSGPIVIGQAAEFDYS---GSQACKALREEGYEVVLV------------------ 47 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ-- 117 +PA I P + T D + P + G + ++Q Sbjct: 48 -NSNPATIMTDPEMADRVYI---EPLDAEIVAKIIERETPDALLPTLGGQTALNLAVQLT 103 Query: 118 --GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVE 175 G+L + +G+ A D+++ K +R GL++ + + Sbjct: 104 EMGVLDKYGVELIGAKFEAIKKAEDRELFKEAMRKIGLDVPKSDVAHDVSEA----LAIA 159 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFD--HKVIVEQGIKG-REIECA 232 ++G P+ V+PA G + E+ + + ++V++E+G+ G +E E Sbjct: 160 DEIGYPVVVRPAFTLGGTGGGIAYNREELREIAERGIKMSMINQVLIEEGVLGWKEFELE 219 Query: 233 VLGN--DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 V+ + DN E + D V + +R A++ Sbjct: 220 VMRDLADNVVIICSIENFDPMGVHT-------GDSITVAPAQTLTDVEYQYLRDAAIKII 272 Query: 291 QTLGCA-GMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 + +G G + + + VV E+N ++ +A+G + +L Sbjct: 273 REIGVETGGSNIQFAVHPENGRVVAIEMNPRVSRSSA----LASKATGFPIAKIAAKL 326 >gb|AAB67843.1| (U40341) carbamoyl phosphate synthetase large chain [Arabidopsis thaliana] gb|AAG10606.1|AC008030_6 (AC008030) carbamoyl phosphate synthetase large chain (carB) [Arabidopsis thaliana] gb|AAK56257.1|AF367268_1 (AF367268) At1g29900/F1N18_6 [Arabidopsis thaliana] Length = 1187 Score = 198 bits (504), Expect = 8e-50 Identities = 58/360 (16%), Positives = 127/360 (35%), Gaps = 57/360 (15%) Query: 4 LRVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYL 58 ++ I+ G++ E + S A+ + ++V+L+ + + +N Sbjct: 99 KKIMILGAGPIVIGQACEFDYS---GTQACKALREEGYEVILINSNPATIMTDPETANR- 154 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ- 117 + P L + D + P + G + ++ Sbjct: 155 --------TYIAPMTPELVEQVI-------------EKERPDALLPTMGGQTALNLAVAL 193 Query: 118 ---GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 G L + +G+ + A D+++ K +++ GL P T + ++ Sbjct: 194 AESGALEKYGVELIGAKLGAIKKAEDRELFKDAMKNIGLKTPPSGIGTTLDE----CFDI 249 Query: 175 ESKLG-LPLFVKPANQGSSVGVSKVTSEEQYAIAVD--LAFEFDHKVIVEQGIKG-REIE 230 K+G PL ++PA G ++E++ LA +V+VE+ + G +E E Sbjct: 250 AEKIGEFPLIIRPAFTLGGTGGGIAYNKEEFESICKSGLAASATSQVLVEKSLLGWKEYE 309 Query: 231 CAVLGN--DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQ 288 V+ + DN E + + D V + ++R ++ Sbjct: 310 LEVMRDLADNVVIICSIENIDPMGVHT-------GDSITVAPAQTLTDREYQRLRDYSIA 362 Query: 289 AYQTLGC-AGMARVDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 + +G G + V + P + EV+I E+N ++ +A+G + +L Sbjct: 363 IIREIGVECGGSNVQFAVNPVDGEVMIIEMNPRVSRSSA----LASKATGFPIAKMAAKL 418 Score = 191 bits (486), Expect = 9e-48 Identities = 55/367 (14%), Positives = 116/367 (30%), Gaps = 42/367 (11%) Query: 2 EKLRVGIVFGGKSA-----EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 K +V I+ GG + E + A+ + ++ ++L + + D S Sbjct: 648 NKKKVLILGGGPNRIGQGIEFDYCCCHTSF---ALQDAGYETIMLNSNPETVSTDYDTS- 703 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L + + +I GQ + PI H D + Sbjct: 704 ------DRLYFEPLTIEDVLNVIDLEKPDGIIVQFGGQTPLK--LALPIKH---YLDKHM 752 Query: 117 QGMLRVAN-LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVE 175 L A + G+ + A D++ +L + + + + Sbjct: 753 PMSLSGAGPVRIWGTSPDSIDAAEDRERFNAILDELKIEQPKGGIA----KSEADALAIA 808 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGI-KGREIECA 232 ++G P+ V+P+ + V + + ++ A + D V+V++ + EI+ Sbjct: 809 KEVGYPVVVRPSYVLGGRAMEIVYDDSRLITYLENAVQVDPERPVLVDKYLSDAIEIDVD 868 Query: 233 VLGN--DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 L + N E + + ++ D A ++ I IR + Sbjct: 869 TLTDSYGNVVIGGIMEHIEQAGVHS-------GDSACMLPTQTIPASCLQTIRTWTTKLA 921 Query: 291 QTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + L G+ +T +V + E N T P + +A G L+ Sbjct: 922 KKLNVCGLMNCQYAITTSGDVFLLEANPRASRT----VPFVSKAIGHPLAKYAA-LVMSG 976 Query: 351 LERHAAD 357 + Sbjct: 977 KSLKDLN 983 >gb|AAB17897.1| (U39774) D-alanine:D-alanine ligase [Enterococcus avium] Length = 200 Score = 198 bits (503), Expect = 8e-50 Identities = 76/201 (37%), Positives = 120/201 (58%), Gaps = 4/201 (1%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRHNISFAEVE 175 L ++P+VG+ V+ SA MDK +TK +L+ AG+ P++ + + F + E Sbjct: 1 FLETLDMPYVGAGVMTSACAMDKIMTKYILQAAGIPQVPYVPVLKNQWKENPKQIFDKCE 60 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 L P+FVKPAN GSSVG+S+ + E+ A+ A+ +D + +VEQGI EIE AVLG Sbjct: 61 GTLLYPMFVKPANMGSSVGISRAENREELQNALQEAYRYDSRALVEQGIDACEIEVAVLG 120 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 ND+ + + GE+V FY Y+ KYI + ++ +PA + ++ K R A A LG Sbjct: 121 NDDVRTTLPGEVVKEEAFYDYNAKYI-NNTIQMAIPADVPEDVMQKARDFAKSAISMLGG 179 Query: 296 AGMARVDVFLTPENEVVINEI 316 +G++R D FLT +NE+ ++E+ Sbjct: 180 SGLSRCDFFLTNKNELFLDEL 200 >gb|AAF37349.1|AF170810_1 (AF170810) D-alanine:D-alanine ligase [Enterococcus sulfureus] Length = 200 Score = 198 bits (503), Expect = 8e-50 Identities = 80/201 (39%), Positives = 128/201 (62%), Gaps = 4/201 (1%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRHNISFAEVE 175 L V ++P++G+ V+ SA MDK +TK +L+ AG+ P++ + F + E Sbjct: 1 FLEVLDMPYIGAGVVTSACDMDKIMTKYILQAAGIPQVPYMPVLEHQWKENPKQVFEQCE 60 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 L P+FVKPAN GSSVG+SK + + A+ A+++D +V++EQGI+ REIE AVLG Sbjct: 61 GSLLYPMFVKPANMGSSVGISKAENRLELQAALAEAYKYDSRVVIEQGIEAREIEVAVLG 120 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 N++ + + GEIV FY Y++KYID + ++ +PA ++ E+ K + A +AY LG Sbjct: 121 NEDVRTTAAGEIVKDVAFYDYNSKYIDNN-IEMQIPAQVSDEVQQKAQEYAKKAYIMLGG 179 Query: 296 AGMARVDVFLTPENEVVINEI 316 +G++R D FLT +NE+ +NE+ Sbjct: 180 SGLSRCDFFLTSKNELFLNEL 200 >gb|AAF37342.1|AF170803_1 (AF170803) D-alanine:D-alanine ligase [Enterococcus columbae] Length = 199 Score = 198 bits (503), Expect = 9e-50 Identities = 82/201 (40%), Positives = 123/201 (60%), Gaps = 5/201 (2%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT---RANRHNISFAEVE 175 L +P+VG+ VLASA MDK +TK +L+ G+ P++ + + F + E Sbjct: 1 FLETLKMPYVGTGVLASACGMDKIMTKYVLQAGGIPQVPYMPVLYTQWKEQPQQIFEQCE 60 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 L P+FVKPAN GSSVG+SK + E+ A+ +D +VI+EQGI+ REIE AVLG Sbjct: 61 GSLLYPMFVKPANMGSSVGISKAENREELDNALKE-LLYDTRVIIEQGIEAREIEVAVLG 119 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 N++ + + GEIV FY Y++KYID + +PA + E+ +K + A +AY LG Sbjct: 120 NEDVRTTVAGEIVKDVAFYDYNSKYIDNK-ITMQIPAEVPQEVQEKAQEYAKKAYTMLGG 178 Query: 296 AGMARVDVFLTPENEVVINEI 316 +G++R D FLT +NE+ +NE+ Sbjct: 179 SGLSRCDFFLTNKNELFLNEL 199 >ref|NP_253535.1| (NC_002516) biotin carboxylase [Pseudomonas aeruginosa] sp|P37798|ACCC_PSEAE BIOTIN CARBOXYLASE (A SUBUNIT OF ACETYL-COA CARBOXYLASE (ACC) pir||B49342 acetyl-CoA carboxylase (EC 6.4.1.2), biotin carboxylase - Pseudomonas aeruginosa pir||H83039 biotin carboxylase PA4848 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAA16041.1| (L14612) biotin carboxylase [Pseudomonas aeruginosa] gb|AAG08233.1|AE004898_4 (AE004898) biotin carboxylase [Pseudomonas aeruginosa] Length = 449 Score = 198 bits (503), Expect = 9e-50 Identities = 54/326 (16%), Positives = 105/326 (31%), Gaps = 22/326 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ L + + + + + + H++L + + P + I Sbjct: 4 KVLIANRGEIALRILRACKELGIKTVAVHSTADRELMHLSLADESVCIGPAPATQSYLQI 63 Query: 89 D-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + I P +G L E+ + + FVG DK K Sbjct: 64 PAIIAAAEVTGATAIHPG-YGFLAENADFAEQIERSGFTFVGPTAEVIRLMGDKVSAKDA 122 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 ++ AG+ P + + ++G P+ +K A G G+ V E + + Sbjct: 123 MKRAGVPTVPGSDGPLPED-EETALAIAREVGYPVIIKAAGGGGGRGMRVVYDESELIKS 181 Query: 208 VDL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 L A + V +E+ + R +E VL + A G+ K Sbjct: 182 AKLTRTEAGAAFGNPMVYLEKFLTNPRHVEVQVLSDGQGNAIHLGDR--DCSLQRRHQKV 239 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 I+E I + ++ A VQA +G G + E+NT Sbjct: 240 IEE-----APAPGIDEKARQEVFARCVQACIEIGYRGAGTFEFLY-ENGRFYFIEMNTRV 293 Query: 321 GFTNISMYPKLWQASGLGYTDLITRL 346 + P +G+ + R+ Sbjct: 294 QVEH----PVSEMVTGVDIVKEMLRI 315 >gb|AAF32338.1|AF218939_6 (AF218939) acetyl-CoA carboxylase [Bacillus subtilis] Length = 430 Score = 198 bits (503), Expect = 1e-49 Identities = 59/323 (18%), Positives = 119/323 (36%), Gaps = 33/323 (10%) Query: 40 LLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV-PGKHEHQLIDAQNGQPLPT 98 + I + + A+ Y D H A + + + + Sbjct: 1 MRIIRTCSRLGIKTAAVYSEADRDALHTKAATEAYYIGESRVSESYLNIERIIEAAKKAN 60 Query: 99 VDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPF 158 D I P +G L E+ + N+ F+G A K ++ + +AG+ + P Sbjct: 61 ADAIHPG-YGLLSENSRFAQRCKEENIVFIGPSPAVIAKIGSKIKARKAMEEAGVPVVPG 119 Query: 159 ITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVD------LAF 212 ++ + + A S++G P+ +K + G +G+ V EE A + F Sbjct: 120 VSESLGDIQAACLA--ASEIGYPVMLKASAGGGGIGMQLVPDEEALIKAYEGNKKRAADF 177 Query: 213 EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVP 271 D + +E+ I+ R IE +L + + + ++ + + V+ Sbjct: 178 FGDGSMYIEKVIEHARHIEIQILADHHG-----------HAVHLFERDCSVQRRHQKVIE 226 Query: 272 AAIAP----EINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISM 327 A +P E+ KI AV+A + +G A ++ + E+NT + Sbjct: 227 EAPSPFVDDELRMKIGETAVKAAKAIGYANAGTIEFLVDENKNFYFLEMNTRLQVEH--- 283 Query: 328 YPKLWQASGLGYTDLITRLIELA 350 P + +GL DL+ + + +A Sbjct: 284 -PVTEEITGL---DLVEQQLRVA 302 >ref|NP_274857.1| (NC_003112) acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis MC58] pir||F81033 acetyl-CoA carboxylase, biotin carboxylase NMB1861 [imported] - Neisseria meningitidis (group B strain MD58) gb|AAF42195.1| (AE002536) acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis MC58] Length = 453 Score = 197 bits (502), Expect = 1e-49 Identities = 50/321 (15%), Positives = 106/321 (32%), Gaps = 22/321 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQ-L 87 + +R ++ L + + ++ + + D H+ L + + + + Sbjct: 4 KVLIANRGEIALRVLRACREMGIATVAVHSEADKDSLHVKLADESVCIGPAASAQSYLNV 63 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + D + P +G L E+ + + F+G DK K Sbjct: 64 PAIIAAAEVSCADAVHPG-YGFLAENADFAEQVEQSGFTFIGPKPDTIRLMGDKVSAKHA 122 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + AG+ P + ++ K+G P+ +K + G G+ V +E + Sbjct: 123 MIAAGVPCVPGSDGALPDDGEE-ILKIADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQS 181 Query: 208 VDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 V++ A + V +E+ ++ R +E V+ +++ A E K Sbjct: 182 VEMTKAEAGAAFGNPMVYMERYLQRPRHVEIQVIADEHGNAIYLAER--DCSLQRRHQKV 239 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 I+E I + KI A + +G G + + E E+NT Sbjct: 240 IEE-----APAPFITEKERAKIGNACADACKRIGYRGAGTFEFLY-EDGEFFFIEMNTRV 293 Query: 321 GFTNISMYPKLWQASGLGYTD 341 + P +G+ Sbjct: 294 QVEH----PVTELITGVDIVQ 310 >ref|NP_276131.1| (NC_000916) carbamoyl-phosphate synthase, large subunit [Methanothermobacter thermautotrophicus] pir||D69233 carbamoyl-phosphate synthase, large subunit - Methanobacterium thermoautotrophicum (strain Delta H) gb|AAB85493.1| (AE000872) carbamoyl-phosphate synthase, large subunit [Methanothermobacter thermautotrophicus] Length = 828 Score = 197 bits (502), Expect = 1e-49 Identities = 57/363 (15%), Positives = 125/363 (33%), Gaps = 53/363 (14%) Query: 2 EKLRVGIVFGGKSA-----EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 ++ +V I+ G E + A A+ + ++ +++ + + D S Sbjct: 311 DRRKVLIIGSGPIRIGQGIEFDYCCVHA---AMALTEDGYETIMVNNNPETVSTDYDIS- 366 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + LA + + ++ GQ + V L E Sbjct: 367 ------DKLYFEPLTLEDVLAIIEKEKPEGVVVQFGGQTSINLAV-------PLAE---- 409 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 A + +G+ + D++ +L G+ AP+ V Sbjct: 410 ------AGVRILGTPHESIDRVEDRERFTEVLNKLGIPQAPYGIAKSF----EDARAVAE 459 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGI-KGREIECAV 233 ++G P+ V+P+ + V + + + A ++V++ + E++ Sbjct: 460 RIGYPVLVRPSYVLGGRAMEIVYDDVELEEYMREAVRVSPEHPILVDKFLEDAIEVDVDA 519 Query: 234 LGND-NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 L + + E + + ++ D A V+ P +I +I D I+ + Sbjct: 520 LCDGTDVYIGGIMEHIEEAGVHS-------GDSACVIPPQSIPEDIIDTIKEYTRKLALE 572 Query: 293 LGCAGMARVDVFLTPENE--VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 L G+ + + P+++ V I E N T P + +A+G+ + RL+ A Sbjct: 573 LEVVGLINIQYAVKPDSDPSVYILEANPRASRT----VPFVSKATGVPLAKMAARLMMGA 628 Query: 351 LER 353 R Sbjct: 629 KLR 631 Score = 62.9 bits (152), Expect = 5e-09 Identities = 15/103 (14%), Positives = 37/103 (35%), Gaps = 12/103 (11%) Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 E + + ++ V ++ E N ++R A++ + L G + Sbjct: 1 MENIDPMGIHTGES-------VVVAPAQTLSDEDNQRLRDAAIKIIRALKIEGGCNIQFA 53 Query: 305 LTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 + PE E + E+N ++ +A+G + ++ Sbjct: 54 VHPETGEYKVIEVNPRVSRSSA----LASKATGYPIAKIAAKI 92 >gb|AAB17901.1| (U39777) D-alanine:D-alanine ligase [Enterococcus saccharolyticus] Length = 200 Score = 197 bits (502), Expect = 1e-49 Identities = 79/201 (39%), Positives = 125/201 (61%), Gaps = 4/201 (1%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRHNISFAEVE 175 L +P+VG+ VL SA MDK +TK +L AG+ P++ + + F + E Sbjct: 1 FLETIRMPYVGAGVLTSACGMDKIMTKYILHSAGIPQVPYVPVLKNQWKENPKQIFEQCE 60 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 L P+FVKPAN GSSVG+SK + + A++ A+++D++ ++EQGI+ REIE A+LG Sbjct: 61 GSLRYPMFVKPANMGSSVGISKAENRVELQNALEEAYKYDNRAVIEQGIEAREIEVAILG 120 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 N++ + + GEIV FY Y++KYID + + +PA + E+ +K + A AY LG Sbjct: 121 NEDVRTTMAGEIVKDVAFYDYNSKYID-NSIVMQIPAQVPDEVQEKAQEYAKLAYTMLGG 179 Query: 296 AGMARVDVFLTPENEVVINEI 316 +G++R D FLT +NE+ +NE+ Sbjct: 180 SGLSRCDFFLTNKNELFLNEL 200 >ref|NP_389706.1| (NC_000964) similar to biotin carboxylase [Bacillus subtilis] pir||E69893 biotin carboxylase homolog yngH - Bacillus subtilis emb|CAA74216.1| (Y13917) yngH [Bacillus subtilis] emb|CAB13707.1| (Z99113) similar to biotin carboxylase [Bacillus subtilis] Length = 444 Score = 197 bits (502), Expect = 1e-49 Identities = 55/333 (16%), Positives = 122/333 (36%), Gaps = 31/333 (9%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ + I + + + Y D H A + + + I Sbjct: 4 KVLIANRGEIAMRIIRTCSRLGIKTVAVYSEADKDAPHTKAATEAYLIGESRVSESYLNI 63 Query: 89 DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLL 148 + +G L E+ + N+ F+G A K ++ + Sbjct: 64 ERIIKTAKKAKADAIHPGYGLLSENSRFAERCKQENIVFIGPSPDIIAKMGSKIEARKAM 123 Query: 149 RDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV 208 AG+ + P ++ + + + S++G P+ +K + G +G+ +V +EE A Sbjct: 124 EAAGVPVVPGVSESLGDI--EAACRTASQIGYPVMLKASAGGGGIGMQRVENEEALKKAY 181 Query: 209 D------LAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYI 261 + F D + +E+ I+ R IE +L + + + ++ Sbjct: 182 EGNKKRAADFFGDGSMYIEKVIEHARHIEVQLLADQHG-----------HTVHLFERDCS 230 Query: 262 DEDGAKVVVPAAIAP----EINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 + + V+ A +P E+ KI AV+A + +G ++ + + E+N Sbjct: 231 VQRRHQKVIEEAPSPFVDDELRMKIGQTAVKAAKAIGYTNAGTIEFIVDQKQNFYFLEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 T + P + +GL DL+ + + +A Sbjct: 291 TRLQVEH----PVTEEITGL---DLVEQQLRIA 316 >gb|AAC41643.1| (M64926) urea amidolyase [Saccharomyces cerevisiae] Length = 1835 Score = 196 bits (500), Expect = 2e-49 Identities = 61/335 (18%), Positives = 108/335 (32%), Gaps = 40/335 (11%) Query: 24 AKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKH 83 A I+ + K V + D ++ + P H Sbjct: 645 AVRIIKTLKKLGIRSVAVYSDPDKYSQHVTDADVSV----PLHGTTAAQTYL-------- 692 Query: 84 EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + + I P +G L E+ A + FVG K Sbjct: 693 --DMNKIIDAAKQTNAQAIIPG-YGFLSENADFSDACTSAGITFVGPSGDIIRGLGLKHS 749 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 +++ + AG+ + P L +V ++L P+ VK G +G+ KV SEE Sbjct: 750 ARQIAQKAGVPLVPGSLLIT---SVEEAKKVAAELEYPVMVKSTAGGGGIGLQKVDSEED 806 Query: 204 YAIAVD------LAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 + F D V +++ I+ R +E ++G+ +A GE Sbjct: 807 IEHIFETVKHQGETFFGDAGVFLKRFIENARHVEVQLMGDGFGKAIALGER--DCSLQRR 864 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTP-ENEVVINE 315 + K I+E + + +R A L V+ ++E E Sbjct: 865 NQKVIEE-----TPAPNLPEKTRLALRKAAESLGSLLNYKCAGTVEFIYDEKKDEFYFLE 919 Query: 316 INTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 +NT + P +GL DL+ +I +A Sbjct: 920 VNTRLQVEH----PITEMVTGL---DLVEWMIRIA 947 >gb|AAH06915.1|AAH06915 (BC006915) Similar to Propionyl Coenzyme A carboxylase, alpha polypeptide [Mus musculus] Length = 724 Score = 196 bits (500), Expect = 2e-49 Identities = 56/331 (16%), Positives = 115/331 (33%), Gaps = 25/331 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQ-L 87 + +R ++ I + + + + H+ + A + P + + Sbjct: 61 KILIANRGEIACRVIKTCKKMGIKTVAIHSDVDASSVHVKMADEAVCVGPAPTSKSYLNM 120 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + P +G L E+ L ++ F+G D A A DK +K L Sbjct: 121 DAIMEAIKKTRAQAVHPG-YGFLSENKEFAKRLAAEDVTFIGPDTHAIQAMGDKIESKLL 179 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + A +N P + + ++G P+ +K + G G+ +E+ Sbjct: 180 AKRAKVNTIPGFDGVVKDADEAV--RIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDG 237 Query: 208 VDLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 + + D ++++E+ I R IE VLG+ + A E + K Sbjct: 238 FRFSSQEAASSFGDDRLLIEKFIDNPRHIEIQVLGDKHGNALWLNER--ECSIQRRNQKV 295 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E + + PE + AV + + + V+ + + E+NT Sbjct: 296 VEEAPSIF-----LDPETRQAMGEQAVALAKAVKYSSAGTVEFLVDSQKNFYFLEMNTRL 350 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELAL 351 + P +GL DL+ +I +A Sbjct: 351 QVEH----PVTECITGL---DLVQEMILVAK 374 >gb|AAB41851.1| (U69162) D-Alanine:D-Alanine ligase [Streptococcus bovis] Length = 197 Score = 196 bits (499), Expect = 3e-49 Identities = 78/198 (39%), Positives = 120/198 (60%), Gaps = 1/198 (0%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 L + +P+VG+++L+S+ MDK TK +L AG+ + ++T + AEV KL Sbjct: 1 FLEILKMPYVGTNILSSSVAMDKISTKHVLESAGVPLVAYVTYVEGADLEKAVAEVNEKL 60 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 P+F+KPAN GSSVG+SK EE A+DLA ++D ++++E G+ REIE +LGN + Sbjct: 61 TYPVFIKPANMGSSVGISKADDEEGLRSAIDLALKYDSRILIETGVNAREIEVGILGNAD 120 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 Q + GE+V FY YD KYID + +PA I I +++R A A++ +G G+ Sbjct: 121 VQTTLPGEVVKDVAFYDYDAKYIDNK-ITMDIPAHIDSNIMEEMRGYATTAFRAIGGCGL 179 Query: 299 ARVDVFLTPENEVVINEI 316 +R D FLT + V +NE+ Sbjct: 180 SRCDFFLTEDGHVYLNEL 197 >gb|AAB31500.1| (S72370) pyruvate carboxylase; pyruvate:carbon dioxide ligase [Homo sapiens] Length = 1178 Score = 196 bits (499), Expect = 3e-49 Identities = 51/308 (16%), Positives = 102/308 (32%), Gaps = 19/308 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSL--AQVPGKHE 84 I + +R ++ + + + + Y H A + P + Sbjct: 37 IKKVMVANRGEIAIRVFRACTELGIRTVAIYSEQDTGQMHRQKADEAYLIGRGLAPVQAY 96 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D VD + P +G L E + A + F+G DK Sbjct: 97 LHIPDIIKVAKENNVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEA 155 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + + AG+ + P + H E + G P+ K A G G+ V S E+ Sbjct: 156 RAIAIAAGVPVVPGTDAPITSLHEAH--EFSNTYGFPIIFKAAYGGGGRGMRVVHSYEEL 213 Query: 205 AI----AVDLAFE--FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A+ + + VE+ I+ R IE +LG+ E Sbjct: 214 EENYTRAYSEAWPAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYER--DCSIQRRH 271 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K + ++ A + P++ ++ + +V+ + +G V+ + + E+N Sbjct: 272 QKVV-----EIAPAAHLDPQLRTRLTSDSVKLAKQVGYENAGTVEFLVDRHGKHYFIEVN 326 Query: 318 TLPGFTNI 325 + + Sbjct: 327 SRLQVEHT 334 >ref|NP_000273.1| (NM_000282) Propionyl-Coenzyme A carboxylase, alpha polypeptide precursor [Homo sapiens] ref|XP_049016.1| (XM_049016) Propionyl-Coenzyme A carboxylase, alpha polypeptide precursor [Homo sapiens] sp|P05165|PCCA_HUMAN PROPIONYL-COA CARBOXYLASE ALPHA CHAIN, MITOCHONDRIAL PRECURSOR (PCCASE ALPHA SUBUNIT) (PROPANOYL-COA:CARBON DIOXIDE LIGASE ALPHA SUBUNIT) pir||A27883 propionyl-CoA carboxylase (EC 6.4.1.3) alpha chain precursor - human emb|CAA32763.1| (X14608) propionyl-CoA carboxylase [Homo sapiens] gb|AAH00140.1|AAH00140 (BC000140) propionyl Coenzyme A carboxylase, alpha polypeptide [Homo sapiens] Length = 703 Score = 196 bits (499), Expect = 3e-49 Identities = 56/331 (16%), Positives = 115/331 (33%), Gaps = 25/331 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQ-L 87 + +R ++ I + + + + H+ + A + P + + Sbjct: 40 KILVANRGEIACRVIRTCKKMGIKTVAIHSDVDASSVHVKMADEAVCVGPAPTSKSYLNM 99 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + P +G L E+ L ++ F+G D A A DK +K L Sbjct: 100 DAIMEAIKKTRAQAVHPG-YGFLSENKEFARCLAAEDVVFIGPDTHAIQAMGDKIESKLL 158 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + A +N P + + ++G P+ +K + G G+ +E+ Sbjct: 159 AKKAEVNTIPGFDGVVKDAEEAV--RIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDG 216 Query: 208 VDLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 L+ + D ++++E+ I R IE VLG+ + A E + K Sbjct: 217 FRLSSQEAASSFGDDRLLIEKFIDNPRHIEIQVLGDKHGNALWLNER--ECSIQRRNQKV 274 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E + + E + AV + + + V+ + + E+NT Sbjct: 275 VEEAPSIF-----LDAETRRAMGEQAVALARAVKYSSAGTVEFLVDSKKNFYFLEMNTRL 329 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELAL 351 + P +GL DL+ +I +A Sbjct: 330 QVEH----PVTECITGL---DLVQEMIRVAK 353 >ref|NP_174283.1| (NC_003070) carbamoylphosphate synthetase, putative [Arabidopsis thaliana] Length = 956 Score = 196 bits (498), Expect = 3e-49 Identities = 58/360 (16%), Positives = 127/360 (35%), Gaps = 57/360 (15%) Query: 4 LRVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYL 58 ++ I+ G++ E + S A+ + ++V+L+ + + +N Sbjct: 99 KKIMILGAGPIVIGQACEFDYS---GTQACKALREEGYEVILINSNPATIMTDPETANR- 154 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ- 117 + P L + D + P + G + ++ Sbjct: 155 --------TYIAPMTPELVEQVI-------------EKERPDALLPTMGGQTALNLAVAL 193 Query: 118 ---GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 G L + +G+ + A D+++ K +++ GL P T + ++ Sbjct: 194 AESGALEKYGVELIGAKLGAIKKAEDRELFKDAMKNIGLKTPPSGIGTTLDE----CFDI 249 Query: 175 ESKLG-LPLFVKPANQGSSVGVSKVTSEEQYAIAVD--LAFEFDHKVIVEQGIKG-REIE 230 K+G PL ++PA G ++E++ LA +V+VE+ + G +E E Sbjct: 250 AEKIGEFPLIIRPAFTLGGTGGGIAYNKEEFESICKSGLAASATSQVLVEKSLLGWKEYE 309 Query: 231 CAVLGN--DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQ 288 V+ + DN E + + D V + ++R ++ Sbjct: 310 LEVMRDLADNVVIICSIENIDPMGVHT-------GDSITVAPAQTLTDREYQRLRDYSIA 362 Query: 289 AYQTLGC-AGMARVDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 + +G G + V + P + EV+I E+N ++ +A+G + +L Sbjct: 363 IIREIGVECGGSNVQFAVNPVDGEVMIIEMNPRVSRSSA----LASKATGFPIAKMAAKL 418 Score = 168 bits (425), Expect = 1e-40 Identities = 48/329 (14%), Positives = 103/329 (30%), Gaps = 34/329 (10%) Query: 35 RFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ 94 ++ ++L + + D S D + L + + +I GQ Sbjct: 452 GYETIMLNSNPETVSTDYDTS-------DRLYFEPLTIEDVLNVIDLEKPDGIIVQFGGQ 504 Query: 95 PLPTVDVIFPIVHGTLGEDGSLQGMLRVAN-LPFVGSDVLASAACMDKDVTKRLLRDAGL 153 + PI H D + L A + G+ + A D++ +L + + Sbjct: 505 TPLK--LALPIKH---YLDKHMPMSLSGAGPVRIWGTSPDSIDAAEDRERFNAILDELKI 559 Query: 154 NIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFE 213 + + ++G P+ V+P+ + V + + ++ A + Sbjct: 560 EQPKGGIA----KSEADALAIAKEVGYPVVVRPSYVLGGRAMEIVYDDSRLITYLENAVQ 615 Query: 214 FDH--KVIVEQGI-KGREIECAVLGN--DNPQASTCGEIVLTSDFYAYDTKYIDEDGAKV 268 D V+V++ + EI+ L + N E + + ++ D A + Sbjct: 616 VDPERPVLVDKYLSDAIEIDVDTLTDSYGNVVIGGIMEHIEQAGVHS-------GDSACM 668 Query: 269 VVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMY 328 + I IR + + L G+ +T +V + E N T Sbjct: 669 LPTQTIPASCLQTIRTWTTKLAKKLNVCGLMNCQYAITTSGDVFLLEANPRASRT----V 724 Query: 329 PKLWQASGLGYTDLITRLIELALERHAAD 357 P + +A G L+ + Sbjct: 725 PFVSKAIGHPLAKYAA-LVMSGKSLKDLN 752 >gb|AAB17899.1| (U39778) D-alanine:D-alanine ligase [Enterococcus dispar] Length = 200 Score = 196 bits (498), Expect = 3e-49 Identities = 80/201 (39%), Positives = 125/201 (61%), Gaps = 4/201 (1%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRHNISFAEVE 175 L ++P++G+ VL SA MDK +TK +L+ AG+ P++ + + F + E Sbjct: 1 FLETIDMPYIGAGVLTSACGMDKIMTKYILQAAGIPQVPYVPVLKNLWKENPKQIFEQCE 60 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 L P+FVKPAN GSSVG+SK + E+ A+ A+++D + IVEQGI+ EIE A+LG Sbjct: 61 GTLLYPMFVKPANMGSSVGISKAENREELQNALQEAYKYDTRAIVEQGIERGEIEVAILG 120 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 N++ + + GEIV FY Y++KYID + + +PA I ++ K + A +AY LG Sbjct: 121 NEDVRTTLPGEIVKDVAFYDYNSKYID-NQIIMQIPAEIPEDVQQKAQDFAKKAYVMLGG 179 Query: 296 AGMARVDVFLTPENEVVINEI 316 +G++R D FLT +NE+ +NE+ Sbjct: 180 SGLSRCDFFLTNKNELFLNEL 200 >pir||T06360 methylcrotonoyl-CoA carboxylase (EC 6.4.1.4) biotin carboxylase chain - soybean Length = 731 Score = 196 bits (498), Expect = 3e-49 Identities = 57/334 (17%), Positives = 114/334 (34%), Gaps = 26/334 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 I + +R ++ + + + Y D H+A A + P + + Sbjct: 32 RIEKILVANRGEIACRITRTARRLGIQTVAVYSDADRDSLHVATADEAIRIGPPPARLSY 91 Query: 86 Q-LIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + I P +G L E + + L F+G A DK + Sbjct: 92 LNGASIVDAAIRSGAQAIHPG-YGFLSESADFAKLCEESGLTFIGPPASAIRDMGDKSAS 150 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 KR++ AG+ + P + + ++G P+ +KP + G G+ V + +++ Sbjct: 151 KRIMGAAGVPLVPGYHGYDQDIEKMKLE--ADRIGYPVLIKPTHGGGGKGMRIVHTPDEF 208 Query: 205 AIAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + A + +++E+ I + R IE + G+ + E Sbjct: 209 VESFLAAQREAAASFGVNTILLEKYITRPRHIEVQIFGDKHGNVLHLYER--DCSVQRRH 266 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTP-ENEVVINEI 316 K I+E I+ + ++ AV A + + V+ + +E E+ Sbjct: 267 QKIIEE-----APAPNISADFRAQLGVAAVSAAKAVNYYNAGTVEFIVDTVSDEFYFMEM 321 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 NT + P G DL+ I +A Sbjct: 322 NTRLQVEH----PVTEMIVG---QDLVEWQILVA 348 >gb|AAL02364.1| (AY046947) propionyl CoA-carboxylase alpha-subunit [Mus musculus] Length = 724 Score = 196 bits (498), Expect = 4e-49 Identities = 56/331 (16%), Positives = 115/331 (33%), Gaps = 25/331 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQ-L 87 + +R ++ I + + + + H+ + A + P + + Sbjct: 61 KILIANRGEIACRVIKTCKKMGIKTVAIHSDVDASSVHVKMADEAVCVGPAPTSKSYLNM 120 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + P +G L E+ L ++ F+G D A A DK +K L Sbjct: 121 DAIMEAIKKTRAQAVHPG-YGFLSENKEFAKRLAAEDVTFIGPDTHAIQAMGDKIESKLL 179 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + A +N P + + ++G P+ +K + G G+ +E+ Sbjct: 180 AKRAKVNTIPGFDGVVKDADEAV--RIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDG 237 Query: 208 VDLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 + + D ++++E+ I R IE VLG+ + A E + K Sbjct: 238 FRFSSQEAASSFGDDRLLIEKFIDNPRHIEIQVLGDKHGNALWLNER--ECSIQRRNQKV 295 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E + + PE + AV + + + V+ + + E+NT Sbjct: 296 VEEAPSIF-----LDPETRQAMGEQAVALAKAVKYSSAGTVEFLVDSQKNFYFLEMNTRL 350 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELAL 351 + P +GL DL+ +I +A Sbjct: 351 QVEH----PVTECITGL---DLVQEMILVAK 374 >ref|NP_207532.1| (NC_000915) D-alanine:D-alanine ligase A (ddlA) [Helicobacter pylori 26695] sp|P56191|DDL_HELPY D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||B64612 D-alanine--D-alanine ligase A homolog - Helicobacter pylori (strain 26695) gb|AAD07784.1| (AE000586) D-alanine:D-alanine ligase A (ddlA) [Helicobacter pylori 26695] Length = 347 Score = 195 bits (497), Expect = 5e-49 Identities = 86/327 (26%), Positives = 144/327 (43%), Gaps = 30/327 (9%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 + ++FGG S EHE+S+ SA + + K R + +D+ +++ + SN Sbjct: 1 MEFCVLFGGASFEHEISIVSAIA-LKGVLKDRIK-YFIFLDENHHFYLIEESNM------ 52 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQN--------GQPLPTVDVIFPIVHGTLGEDGS 115 + AQ+ K LI N G + + ++ +VHG GEDG Sbjct: 53 --------HSKYFAQIKEKKLPPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGK 104 Query: 116 LQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVE 175 L +L + F+G + AS +K +TK +D G+ + L NR N A Sbjct: 105 LASLLEFYRIAFIGPRIEASVLSYNKYLTKLYAKDLGVKTLDHVLLNEKNRAN---ALDL 161 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVL 234 P +KP N GSS+GV+ V E++ A+D AFE+ +V++E I+G +E A Sbjct: 162 MNFNFPFIIKPNNAGSSLGVNVVKEEKELVYALDGAFEYSKEVLIEPFIQGVKEYNLAGC 221 Query: 235 GNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 + E +F + KY+D A ++ + ++++ + Y L Sbjct: 222 KIKKDFCFSYVEEPNKQEFLDFKQKYLDFSRN-KAPKANLSNALEEQLKENFKKLYNDLF 280 Query: 295 CAGMARVDVFLTPENEVVINEINTLPG 321 + R D F+ EV +NEIN +PG Sbjct: 281 DGAIIRCDFFVIKN-EVYLNEINPIPG 306 >gb|AAB92588.1| (AF038548) pyruvate carboxylase [Corynebacterium glutamicum] emb|CAA70739.1| (Y09548) pyruvate carboxylase [Corynebacterium glutamicum] Length = 1140 Score = 195 bits (496), Expect = 6e-49 Identities = 55/313 (17%), Positives = 103/313 (32%), Gaps = 28/313 (8%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA--QVPGKH 83 + +R ++ + + + + Y H + A + P K Sbjct: 11 AFKKILVANRGEIAVRAFRAALETGAATVAIYPREDRGSFHRSFASEAVRIGTEGSPVKA 70 Query: 84 EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + + D I+P +G L E+ L + F+G DK Sbjct: 71 YLDIDEIIGAAKKVKADAIYPG-YGFLSENAQLARECAENGITFIGPTPEVLDLTGDKSR 129 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 + AGL + T +++ + P+FVK G G+ V S ++ Sbjct: 130 AVTAAKKAGLPVLAEST---PSKNIDEIVKSAEGQTYPIFVKAVAGGGGRGMRFVASPDE 186 Query: 204 YAIAVDLAFE------FDHKVIVEQG-IKGREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 A D V VE+ I + IE +LG+ + + Y Sbjct: 187 LRKLATEASREAEAAFGDGAVYVERAVINPQHIEVQILGDHTGEV-----------VHLY 235 Query: 257 DTKYIDEDGAKVVVP----AAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVV 312 + + + VV + PE+ D+I A AV+ +++G G V+ + + V Sbjct: 236 ERDCSLQRRHQKVVEIAPAQHLDPELRDRICADAVKFCRSIGYQGAGTVEFLVDEKGNHV 295 Query: 313 INEINTLPGFTNI 325 E+N + Sbjct: 296 FIEMNPRIQVEHT 308 >ref|NP_217017.1| (NC_000962) accA1 [Mycobacterium tuberculosis H37Rv] ref|NP_337066.1| (NC_002755) acetyl/propionyl-CoA carboxylase, alpha subunit [Mycobacterium tuberculosis CDC1551] sp|P46401|BCCA_MYCTU ACETYL-/PROPIONYL-COENZYME A CARBOXYLASE ALPHA CHAIN [INCLUDES: BIOTIN CARBOXYLASE ; BIOTIN CARBOXYL CARRIER PROTEIN (BCCP)] pir||B55579 biotin carboxyl carrier protein - Mycobacterium tuberculosis emb|CAA79609.1| (Z19549) biotin carboxyl carrier protein [Mycobacterium tuberculosis] emb|CAB08919.1| (Z95556) accA1 [Mycobacterium tuberculosis H37Rv] gb|AAK46880.1| (AE007094) acetyl/propionyl-CoA carboxylase, alpha subunit [Mycobacterium tuberculosis CDC1551] Length = 654 Score = 195 bits (496), Expect = 6e-49 Identities = 59/337 (17%), Positives = 113/337 (33%), Gaps = 42/337 (12%) Query: 24 AKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKH 83 A ++ + + V + D D H+ +A L P + Sbjct: 14 AVRVIRTLRRLGIRSVAVYSDPD---------------VDARHVLEADAAVRLGPAPARE 58 Query: 84 EHQLI-DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKD 142 + I + I P +G L E+ A + F+G A DK Sbjct: 59 SYLDIGKVLDAAARTGAQAIHPG-YGFLAENADFAAACERARVVFLGPPARAIEVMGDKI 117 Query: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEE 202 K + + + P + RA + + +++G P+ +KP+ G G+ V Sbjct: 118 AAKNAVAAFDVPVVPGVA--RAGLTDDALVTAAAEVGYPVLIKPSAGGGGKGMRLVQDPA 175 Query: 203 QYAIAVDLAFE------FDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYA 255 + A+ A D + +E+ + + R IE VL + + GE Sbjct: 176 RLPEALVSARREAMSSFGDDTLFLERFVLRPRHIEVQVLADAHGNVVHLGER--ECSLQR 233 Query: 256 YDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE--NEVVI 313 K I+E + P+ ++I A + + G V+ ++ + +E Sbjct: 234 RHQKVIEE-----APSPLLDPQTRERIGVAACNTARCVDYVGAGTVEFIVSAQRPDEFFF 288 Query: 314 NEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 E+NT + P +GL DL+ + + Sbjct: 289 MEMNTRLQVEH----PVTEAITGL---DLVEWQLRVG 318 >ref|NP_000911.1| (NM_000920) pyruvate carboxylase precursor [Homo sapiens] ref|NP_071504.1| (NM_022172) pyruvate carboxylase precursor [Homo sapiens] pir||G01933 pyruvate carboxylase (EC 6.4.1.1) precursor - human pir||JC2460 pyruvate carboxylase (EC 6.4.1.1) precursor - human gb|AAA82937.1| (U30891) pyruvate carboxylase precursor [Homo sapiens] Length = 1178 Score = 195 bits (495), Expect = 7e-49 Identities = 51/308 (16%), Positives = 101/308 (32%), Gaps = 19/308 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSL--AQVPGKHE 84 I + +R ++ + + + + Y H A + P + Sbjct: 37 IKKVMVANRGEIAIRVFRACTELGIRTVAIYSEQDTGQMHRQKADEAYLIGRGLAPVQAY 96 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D VD + P +G L E + A + F+G DK Sbjct: 97 LHIPDIIKVAKENNVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEA 155 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + + AG+ + P + H E + G P+ K A G G+ V S E+ Sbjct: 156 RAIAIAAGVPVVPGTDAPITSLHEAH--EFSNTYGFPIIFKAAYGGGGRGMRVVHSYEEL 213 Query: 205 AI----AVDLAFE--FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A + + VE+ I+ R IE +LG+ E Sbjct: 214 EENYTRAYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYER--DCSIQRRH 271 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K + ++ A + P++ ++ + +V+ + +G V+ + + E+N Sbjct: 272 QKVV-----EIAPAAHLDPQLRTRLTSDSVKLAKQVGYENAGTVEFLVDRHGKHYFIEVN 326 Query: 318 TLPGFTNI 325 + + Sbjct: 327 SRLQVEHT 334 >sp|P11498|PYC_HUMAN Pyruvate carboxylase, mitochondrial precursor (Pyruvic carboxylase) (PCB) gb|AAA99537.1| (U04641) pyruvate: carbon-dioxide ligase (ADP-forming) [Homo sapiens] gb|AAH11617.1|AAH11617 (BC011617) pyruvate carboxylase [Homo sapiens] prf||2023166A pyruvate carboxylase [Homo sapiens] Length = 1178 Score = 195 bits (495), Expect = 8e-49 Identities = 51/308 (16%), Positives = 101/308 (32%), Gaps = 19/308 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSL--AQVPGKHE 84 I + +R ++ + + + + Y H A + P + Sbjct: 37 IKKVMVANRGEIAIRVFRACTELGIRTVAIYSEQDTGQMHRQKADEAYLIGRGLAPVQAY 96 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D VD + P +G L E + A + F+G DK Sbjct: 97 LHIPDIIKVAKENNVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEA 155 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + + AG+ + P + H E + G P+ K A G G+ V S E+ Sbjct: 156 RAIAIAAGVPVVPGTDAPITSLHEAH--EFSNTYGFPIIFKAAYGGGGRGMRVVHSYEEL 213 Query: 205 AI----AVDLAFE--FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A + + VE+ I+ R IE +LG+ E Sbjct: 214 EENYTRAYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYER--DCSIQRRH 271 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K + ++ A + P++ ++ + +V+ + +G V+ + + E+N Sbjct: 272 QKVV-----EIAPAAHLDPQLRTRLTSDSVKLAKQVGYENAGTVEFLVDRHGKHYFIEVN 326 Query: 318 TLPGFTNI 325 + + Sbjct: 327 SRLQVEHT 334 >ref|NP_032823.1| (NM_008797) pyruvate decarboxylase [Mus musculus] sp|Q05920|PYC_MOUSE Pyruvate carboxylase, mitochondrial precursor (Pyruvic carboxylase) (PCB) pir||A47255 pyruvate carboxylase (EC 6.4.1.1) precursor [similarity] - mouse gb|AAA39737.1| (L09192) pyruvate carboxylase [Mus musculus] Length = 1178 Score = 194 bits (494), Expect = 9e-49 Identities = 50/308 (16%), Positives = 101/308 (32%), Gaps = 19/308 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSL--AQVPGKHE 84 I + +R ++ + + + + Y H A + P + Sbjct: 37 IKKVMVANRGEIAIRVFRACTELGIRTVAVYSEQDTGQMHRQKADEAYLIGRGLAPVQAY 96 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D VD + P +G L E + A + F+G DK Sbjct: 97 LHIPDIIKVAKENGVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEA 155 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + + AG+ + P ++ H E + G P+ K A G G+ V S E+ Sbjct: 156 RAIAIAAGVPVVPGTDSPISSLHEAH--EFSNTFGFPIIFKAAYGGGGRGMRVVHSYEEL 213 Query: 205 AI----AVDLAFE--FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A + + VE+ I+ R IE +LG+ E Sbjct: 214 EENYTRAYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYER--DCSIQRRH 271 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K + ++ + P++ ++ + +V+ + +G V+ + + E+N Sbjct: 272 QKVV-----EIAPATHLDPQLRSRLTSDSVKLAKQVGYENAGTVEFLVDKHGKHYFIEVN 326 Query: 318 TLPGFTNI 325 + + Sbjct: 327 SRLQVEHT 334 >sp|P95803|DDL_STRMU PUTATIVE D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAB41854.1| (U69165) D-Alanine:D-Alanine ligase [Streptococcus mutans] Length = 198 Score = 194 bits (493), Expect = 1e-48 Identities = 82/199 (41%), Positives = 121/199 (60%), Gaps = 2/199 (1%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDA-GLNIAPFITLTRANRHNISFAEVESK 177 L V +P+VG+++L+S+ MDK TK++L A + ++ L AEVE K Sbjct: 1 FLEVLKMPYVGTNILSSSVAMDKITTKQVLESATTIPQVAYVALIEGEPLESKLAEVEEK 60 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 L P+FVKPAN GSSVG+SK + A+ LA ++D +V++EQG+ REIE +LGN Sbjct: 61 LIYPVFVKPANMGSSVGISKAENRTDLKQAIALALKYDSRVLIEQGVDAREIEVGILGNT 120 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 + + + GEIV FY Y+ KYID + +PA I P I +K+R A++TLGC G Sbjct: 121 DVKTTLPGEIVKVVAFYDYEAKYIDNK-ITMAIPAEIDPVIVEKMRDYRATAFRTLGCCG 179 Query: 298 MARVDVFLTPENEVVINEI 316 ++R D FLT + +V +NE+ Sbjct: 180 LSRCDFFLTEDGKVYLNEL 198 >ref|NP_539184.1| (NC_003317) PYRUVATE CARBOXYLASE [Brucella melitensis] gb|AAL51448.1| (AE009469) PYRUVATE CARBOXYLASE [Brucella melitensis] Length = 1158 Score = 194 bits (493), Expect = 1e-48 Identities = 43/333 (12%), Positives = 101/333 (29%), Gaps = 29/333 (8%) Query: 24 AKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKH 83 A + A ++ V + ++ ++ H+ P + Sbjct: 20 AIRVFRAANELGLKTVTIWAEEDKLSLHRFKADESYQVGRGPHLDRDL-------GPIES 72 Query: 84 EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + + L D I P +G L E + F+G +K Sbjct: 73 YLSIDEIIRVAKLSGADAIHPG-YGLLSESPEFAEACAENGIVFIGPKPETMRRLGNKVA 131 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 + L + G+ + P + ++ +++G PL +K + G G+ + +E Sbjct: 132 ARNLAIEIGVPVVPATDPLPDDMDE--VKKLAAQIGYPLMLKASWGGGGRGMRAIRAEAD 189 Query: 204 YAIAVDLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 A V A +V +E+ ++ R +E +LG+ A E Sbjct: 190 LAREVMEAKREAKAAFGKDEVYLEKLVERARHVEVQILGDTYGNAVHLFER--DCSIQRR 247 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE-NEVVINE 315 + K + + + ++ ++ G V+ + + + E Sbjct: 248 NQKVV-----ERAPAPYLNDAQRRELADYGLKIAHATDYIGAGTVEFLMDADTGKFYFIE 302 Query: 316 INTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 +N + + +G+ ++E Sbjct: 303 VNPRIQVEHTVT----EEVTGIDIVKAQIHILE 331 >ref|NP_250702.1| (NC_002516) probable acyl-CoA carboxylase alpha chain [Pseudomonas aeruginosa] pir||A83395 probable acyl-CoA carboxylase alpha chain PA2012 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG05400.1|AE004627_8 (AE004627) probable acyl-CoA carboxylase alpha chain [Pseudomonas aeruginosa] Length = 655 Score = 194 bits (493), Expect = 1e-48 Identities = 64/333 (19%), Positives = 115/333 (34%), Gaps = 23/333 (6%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHE 84 ++I + +R ++ + + + + H+A A L Sbjct: 6 RSIQRLLVANRGEIACRVMRSARALGIGSVAVHSDIDRHARHVAEADIAVDLGGAKPADS 65 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D L + +G L E+ A L F+G A A K Sbjct: 66 YLRGDRIIAAALASGAQAIHPGYGFLSENADFARACEEAGLLFLGPPAAAIDAMGSKSAA 125 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K L+ +AG+ + P + +F ++G P+ +K A G G+ V E + Sbjct: 126 KALMEEAGVPLVPGY--HGEAQDLETFRREAGRIGYPVLLKAAAGGGGKGMKVVEREAEL 183 Query: 205 AIAVDLAFE------FDHKVIVEQG-IKGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A+ A D +++VE+ +K R +E V + + E Sbjct: 184 AEALSSAQREAKAAFGDARMLVEKYLLKPRHVEIQVFADRHGHCLYLNER--DCSIQRRH 241 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E + E+ + AV+A Q +G G V+ L + E+N Sbjct: 242 QKVVEE-----APAPGLGAELRRAMGEAAVRAAQAIGYVGAGTVEFLLDERGQFFFMEMN 296 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 T + P +GL DL+ I +A Sbjct: 297 TRLQVEH----PVTEAITGL---DLVAWQIRVA 322 >ref|NP_297342.1| (NC_002488) biotin carboxylase subunit of acetyl CoA carboxylase [Xylella fastidiosa 9a5c] pir||E82853 biotin carboxylase subunit of acetyl CoA carboxylase XF0049 [imported] - Xylella fastidiosa (strain 9a5c) gb|AAF82862.1|AE003859_3 (AE003859) biotin carboxylase subunit of acetyl CoA carboxylase [Xylella fastidiosa 9a5c] Length = 469 Score = 193 bits (492), Expect = 1e-48 Identities = 51/319 (15%), Positives = 107/319 (32%), Gaps = 22/319 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ L + + + + + H+A+ + + P + I Sbjct: 18 KVVIANRGEIALRILRACHTLGIRTVAVHSTVDRNLKHVAMADESVCIGSAPSAESYLNI 77 Query: 89 D-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + I P +G L E+ S + + F+G DK Sbjct: 78 PALIAAAEVTDAQAIHPG-YGFLSENASFAERVEQSGFIFIGPRAETIRLMGDKVQAIHA 136 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 ++ AG+ P + + ++ ++G P+ +K A G G+ V +E A Sbjct: 137 MKAAGVPCVPGSDGPLGDDIVANV-KIAREIGYPVIIKAAGGGGGRGMRVVHTEVGLKAA 195 Query: 208 VDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 ++ A + +V +E+ ++ R +E VL + A GE K Sbjct: 196 IETTQSEAKAAFGNGQVYMEKFLENPRHVEIQVLADGQGNAIHLGER--DCSMQRRHQKV 253 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E I + ++I + V A +G G + E+NT Sbjct: 254 VEE-----APAPGITEALRNEIGQVCVDACIRIGYRGAGTFEFLF-ENGRFYFIEMNTRI 307 Query: 321 GFTNISMYPKLWQASGLGY 339 + P + +G+ Sbjct: 308 QVEH----PVTERITGIDL 322 >gb|AAF37348.1| (AF170809) D-alanine:D-alanine ligase [Enterococcus solitarius] Length = 200 Score = 193 bits (492), Expect = 2e-48 Identities = 78/201 (38%), Positives = 122/201 (59%), Gaps = 4/201 (1%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRHNISFAEVE 175 L ++P+VG+ V+ SA+ MDK +TK +L + P++ + + F + E Sbjct: 1 FLETIDMPYVGAGVMTSASSMDKIMTKYILHAVDIPQVPYVPVLKSQWKENPKKIFEQCE 60 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 L P+FVKPAN GSSVG++K ++ A+ A+ +D +V++EQ I+ REIE A+LG Sbjct: 61 GTLLYPMFVKPANMGSSVGMAKANDRKELQEALIEAYRYDSRVVIEQSIEAREIEVAILG 120 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 N++ + + GEIV FY Y++KYID + K+ +PA I E+ K R A AY +LG Sbjct: 121 NEDVRTTLPGEIVKEEAFYDYNSKYIDNN-IKMQIPAQIPEEVQQKAREYATIAYTSLGG 179 Query: 296 AGMARVDVFLTPENEVVINEI 316 G++R D FLT +NE+ +NE+ Sbjct: 180 RGLSRCDFFLTNKNELFLNEL 200 >emb|CAB87214.1| (AL163641) acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces coelicolor A3(2)] Length = 646 Score = 193 bits (491), Expect = 2e-48 Identities = 64/331 (19%), Positives = 113/331 (33%), Gaps = 27/331 (8%) Query: 30 AIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHEHQLI 88 + +R ++ + I V + + D H+ A + P + + Sbjct: 5 VLVANRGEIAVRVIRTLRSMGVRSVAVFSDADADARHVREADDAVRIGPAPATESYLSVE 64 Query: 89 DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLL 148 + P +G L E+ A L F+G A A DK K + Sbjct: 65 RLLAAAARTGAQAVHPG-YGFLAENAGFARACEEAGLVFIGPSADAIALMGDKIRAKETV 123 Query: 149 RDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV 208 R AG+ + P + + + A+ ++G P+ +KP+ G G+ V A + Sbjct: 124 RAAGVPVVPGSSGSGL--TDEQLADAAREIGTPVLLKPSAGGGGKGMRLVRDTAVLADEI 181 Query: 209 DLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYI 261 A D ++VE+ I R IE VL + + GE K I Sbjct: 182 AAARREARASFGDDTLLVERWIDRPRHIEIQVLADGHGGVVHLGER--ECSLQRRHQKVI 239 Query: 262 DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPEN--EVVINEINTL 319 +E + + AVQA ++ G G V+ + + + E+NT Sbjct: 240 EE-----APSVLLDEATRAAMGEAAVQAARSCGYRGAGTVEFIVPGSDPSQYYFMEMNTR 294 Query: 320 PGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + P +GL DL+ + +A Sbjct: 295 LQVEH----PVTELVTGL---DLVEWQLRVA 318 >pir||S68252 pyruvate carboxylase (EC 6.4.1.1) precursor - rat pir||JC4391 pyruvate carboxylase (EC 6.4.1.1) precursor - rat gb|AAC52668.1| (U36585) pyruvate carboxylase [Rattus norvegicus] Length = 1178 Score = 193 bits (491), Expect = 2e-48 Identities = 49/308 (15%), Positives = 98/308 (30%), Gaps = 19/308 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSL--AQVPGKHE 84 I + +R ++ + + + + Y H A + P + Sbjct: 37 IKKVMVANRGEIAIRVFRACTELGIRTVAVYSEQDTGQMHRQKADEAYLIGRGLAPVQAY 96 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D VD + P +G L E + A + F+G DK Sbjct: 97 LHIPDIIKVAKENGVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEA 155 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + + AG+ + P E + G P+ K A G G+ V S E+ Sbjct: 156 RAIAIAAGVPVVPGT--NSPINSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEEL 213 Query: 205 AI----AVDLAFE--FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A + + VE+ I+ R IE +LG+ E Sbjct: 214 EENYTRAYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYER--DCSIQRRH 271 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K + ++ + P++ ++ + +V+ + +G V+ + + E+N Sbjct: 272 QKVV-----EIAPATHLDPQLRSRLTSDSVKLAKQVGYENAGTVEFLVDKHGKHYFIEVN 326 Query: 318 TLPGFTNI 325 + + Sbjct: 327 SRLQVEHT 334 >ref|NP_036876.1| (NM_012744) pyruvate carboxylase [Rattus norvegicus] sp|P52873|PYC_RAT Pyruvate carboxylase, mitochondrial precursor (Pyruvic carboxylase) (PCB) gb|AAA96256.1| (U32314) pyruvate carboxylase [Rattus norvegicus] Length = 1178 Score = 193 bits (491), Expect = 2e-48 Identities = 49/308 (15%), Positives = 98/308 (30%), Gaps = 19/308 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSL--AQVPGKHE 84 I + +R ++ + + + + Y H A + P + Sbjct: 37 IKKVMVANRGEIAIRVFRACTELGIRTVAVYSEQDTGQMHRQKADEAYLIGRGLAPVQAY 96 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D VD + P +G L E + A + F+G DK Sbjct: 97 LHIPDIIKVAKENGVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEA 155 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + + AG+ + P E + G P+ K A G G+ V S E+ Sbjct: 156 RAIAIAAGVPVVPGT--NSPINSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEEL 213 Query: 205 AIAV------DLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 LA + + VE+ I+ R IE +LG+ E Sbjct: 214 EENYTRAYPEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYER--DCSIQRRH 271 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K + ++ + P++ ++ + +V+ + +G V+ + + E+N Sbjct: 272 QKVV-----EIAPATHLDPQLRSRLTSDSVKLAKQVGYENAGTVEFLVDKHGKHYFIEVN 326 Query: 318 TLPGFTNI 325 + + Sbjct: 327 SRLQVEHT 334 >pir||A34337 propionyl-CoA carboxylase (EC 6.4.1.3) alpha chain precursor - rat (fragment) Length = 704 Score = 193 bits (490), Expect = 3e-48 Identities = 56/331 (16%), Positives = 115/331 (33%), Gaps = 25/331 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQ-L 87 + +R ++ I + + + + H+ + A + P + + Sbjct: 41 KILIANRGEIACRVIKTCRKMGIRTVAIHSDVDASSVHVKMADEAVCVGPAPTSKSYLNM 100 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + P +G L E+ L ++ F+G D A A DK +K L Sbjct: 101 DAIMEAIKKTGAQAVHPG-YGFLSENKEFAKCLAAEDVTFIGPDTHAIQAMGDKIESKLL 159 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + A +N P + + ++G P+ +K + G G+ +E+ Sbjct: 160 AKRAKVNTIPGFDGVLKDADEAV--RIAREIGYPVMIKASAGGGGKGMRIPWDDEETRDG 217 Query: 208 VDLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 + + D ++++E+ I R IE VLG+ + A E + K Sbjct: 218 FRFSSQEAASSFGDDRLLIEKFIDNPRHIEIQVLGDKHGNALWLNER--ECSIQRRNQKV 275 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E + + PE + AV + + + V+ + + E+NT Sbjct: 276 VEEAPSIF-----LDPETRRAMGEQAVALAKAVKYSSAGTVEFLVDSQKNFYFLEMNTRL 330 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELAL 351 + P +GL DL+ +I +A Sbjct: 331 QVEH----PVTECITGL---DLVQEMILVAK 354 >ref|NP_387384.1| (NC_003047) PROBABLE PYRUVATE CARBOXYLASE PROTEIN [Sinorhizobium meliloti] emb|CAC47857.1| (AL591793) PROBABLE PYRUVATE CARBOXYLASE PROTEIN [Sinorhizobium meliloti] Length = 1152 Score = 193 bits (490), Expect = 3e-48 Identities = 37/339 (10%), Positives = 98/339 (27%), Gaps = 30/339 (8%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA-------- 77 +I + +R ++ + + + + + H + + Sbjct: 2 SISKILVANRSEIAIRVFRAANELGLKTVAIWAEEDKLALHRFKADESYQVGRGPHLPRD 61 Query: 78 QVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAA 137 P + + L D I P +G L E + F+G Sbjct: 62 LGPIMSYLSIDEVIRVAKLSGADAIHPG-YGLLSESPEFAEACAANGITFIGPKPETMRQ 120 Query: 138 CMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSK 197 +K + L G+ + P + + ++G P+ +K + G G+ Sbjct: 121 LGNKVAARNLAISIGVPVVPATEPLPDDP--EEIKRLAEEIGYPVMLKASWGGGGRGMRA 178 Query: 198 VTSEEQYAIAVDLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLT 250 + + V A +V +E+ ++ R +E +LG+ + E Sbjct: 179 IRDPKDLIREVTEAKREAKAAFGKDEVYLEKLVERARHVESQILGDTHGNVVHLFER--D 236 Query: 251 SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE-N 309 + K + + + ++ +++ + G V+ + + Sbjct: 237 CSIQRRNQKVV-----ERAPAPYLNDAQRQELADYSLKIARATNYIGAGTVEYLMDSDTG 291 Query: 310 EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 + E+N + +G+ +++ Sbjct: 292 KFYFIEVNPRIQVEHTVT----EVVTGIDIVKAQIHILD 326 >ref|NP_357130.1| (NC_003063) AGR_L_2704p [Agrobacterium tumefaciens] [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAK89915.1| (AE008334) AGR_L_2704p [Agrobacterium tumefaciens str. C58 (Cereon)] Length = 709 Score = 193 bits (490), Expect = 3e-48 Identities = 59/339 (17%), Positives = 114/339 (33%), Gaps = 24/339 (7%) Query: 19 VSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ 78 S A + +R ++ I + + Y D H+AL A ++ Sbjct: 40 YSGCEATMFSKILIANRGEIACRIIRTAASMGIRTVAVYSDADRDAMHVALADEAIAIGP 99 Query: 79 VPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAAC 138 P + + + + +G L E+ A L F+G A A Sbjct: 100 APARASYLDGEKIIAAAKASGAEAIHPGYGFLSENAGFAEACASAGLVFIGPPPEAIRAM 159 Query: 139 MDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKV 198 K K L+ AG+ I P + A K+G P+ +K + G G+ V Sbjct: 160 GGKSEAKALMATAGVPIVPGY--HGDEQAEKRLASEADKIGYPVLLKASAGGGGKGMRVV 217 Query: 199 TSEEQYAIAVDLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTS 251 + +A + A + ++++E+ ++ R +E V + + + E Sbjct: 218 RQKHDFAAELAGAKREALAAFGNDRMLIEKYLERPRHVEVQVFADGHGNCVSLFER--DC 275 Query: 252 DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEV 311 K I+E + ++ ++ A A + + G ++ L P Sbjct: 276 SIQRRHQKVIEE-----APAPGLPDDLRQRMYDAATAAARAIDYRGAGTIEFLLDPSG-F 329 Query: 312 VINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 E+NT + P +GL DL+ + +A Sbjct: 330 YFMEMNTRLQVEH----PVTEYITGL---DLVEWQLRVA 361 >ref|NP_243653.1| (NC_002570) acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus halodurans] dbj|BAB06506.1| (AP001516) acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus halodurans] Length = 452 Score = 193 bits (490), Expect = 3e-48 Identities = 65/333 (19%), Positives = 122/333 (36%), Gaps = 26/333 (7%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQ 86 I + +R ++ + I + + + + D H+ + A + P + Sbjct: 2 IKKLLVANRGEIAVRIIRACRELGIETVAVFSEADRDALHVRMADEAYCIGPTPSAKSYL 61 Query: 87 -LIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + + L VD I P +G L E+ + N+ FVG A + KDV + Sbjct: 62 NFTNIMSVATLTEVDAIHPG-YGFLAENADFAEICGECNITFVGPSADAISKMGTKDVAR 120 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 ++ AG+ I P V ++G P+ +K G G+ +EE+ Sbjct: 121 ETMKRAGVPIVPGSEGII--ESVEDGLAVAEQIGYPVIIKATAGGGGKGIRVARNEEELR 178 Query: 206 IAV-----DLAFEFDHK-VIVEQGIKG-REIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 + + A F + V +E+ I+ R +E VL +++ GE Sbjct: 179 KGINITQQEAATAFGNPGVYLEKYIEDFRHVEIQVLADNHGHVIHLGER--DCSIQRRLQ 236 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEIN 317 K ++E AI + ++ AV A + + +G V+ + E+N Sbjct: 237 KLLEE-----TPSPAITEKKRKEMGEAAVAAAKAVNYSGAGTVEFIYDHNNGDFYFMEMN 291 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 T + P +G+ DLI I++A Sbjct: 292 TRIQVEH----PVTEMVTGI---DLIKEQIKVA 317 >pir||T06565 acetyl-CoA carboxylase (EC 6.4.1.2) biotin carboxylase chain - soybean (fragment) gb|AAA85742.1| (U34393) acetyl-CoA carboxylase biotin carboxylase subunit [Glycine max] Length = 289 Score = 193 bits (490), Expect = 3e-48 Identities = 48/295 (16%), Positives = 98/295 (32%), Gaps = 17/295 (5%) Query: 33 KSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLID-AQ 91 +R + +L I + + + Y D H+ A + + G + I Sbjct: 1 ANRGETLLRVIRTCREMGIKTVAVYSTADKDSLHVRFADEAACIGKPAGVDSYLNIPHIM 60 Query: 92 NGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDA 151 + D + P +G L E+ + + F+G DK K + A Sbjct: 61 AAAEITNADAVHPG-YGFLAENAKFSQICADHGIKFIGPTPDMINNMGDKITAKETMIKA 119 Query: 152 GLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLA 211 G+ + P + ++ +G P+ +K G G+ V E + A + A Sbjct: 120 GVPVVPGSGGL-LESLEQAKDLAKNHVGYPVILKATAGGGGEGMRVVWEESELERAYNTA 178 Query: 212 FEF------DHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDED 264 + + +E+ + + R IE V G+ E K ++E Sbjct: 179 KAEAAASFKNDGIYMEKFVEEPRHIEIQVAGDQYGNVCHLSER--DCSIQRRHQKLVEES 236 Query: 265 GAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTL 319 + E+ +K+ A A++A + + ++ + E+NT Sbjct: 237 -----PSPFMTDELREKMGAAAIKAASAINYESVGTIEFLVDKHRNFYFMEMNTR 286 >ref|NP_282436.1| (NC_002163) biotin carboxylase [Campylobacter jejuni] pir||G81271 biotin carboxylase (EC 6.3.4.14) Cj1290c [imported] - Campylobacter jejuni (strain NCTC 11168) emb|CAB73717.1| (AL139078) biotin carboxylase [Campylobacter jejuni] Length = 443 Score = 192 bits (489), Expect = 3e-48 Identities = 65/329 (19%), Positives = 122/329 (36%), Gaps = 27/329 (8%) Query: 31 IDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQL--I 88 + +R ++ L + + A AD A A+ E L Sbjct: 7 LIANRGEIALRALRTIKEMGK-KAICVYSEADKDALYLKYADASICIGKARSSESYLNIP 65 Query: 89 DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLL 148 + D IFP +G L E+ + + N+ F+G V A DK K+++ Sbjct: 66 AIIAAAEIAEADAIFPG-YGFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKAKQVM 124 Query: 149 RDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV 208 + AG+ + P A + ++ ++G P+ +K A G G+ V +E+ A Sbjct: 125 QRAGVPVIPGSDGALAGA--EAAKKLAKEIGYPVILKAAAGGGGRGMRVVENEKDLEKAY 182 Query: 209 DLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYI 261 A D + +E+ I+ R IE V+G+ GE K I Sbjct: 183 WSAESEAMTAFGDGTMYMEKYIQNPRHIEVQVIGDSFGNVIHVGER--DCSMQRRHQKLI 240 Query: 262 DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG 321 +E A + + + ++ A++A + +G G + + + E+NT Sbjct: 241 EESPAIL-----LDEKTRTRLHETAIKAAKAIGYEGAGTFEFLVDKNLDFYFIEMNTRLQ 295 Query: 322 FTNISMYPKLWQASGLGYTDLITRLIELA 350 + SG+ D+I ++I++A Sbjct: 296 VEHCV----SEMVSGI---DIIEQMIKVA 317 >gb|AAC44388.1| (U51439) pyruvate carboxylase [Rhizobium etli] Length = 1154 Score = 192 bits (489), Expect = 4e-48 Identities = 45/335 (13%), Positives = 105/335 (30%), Gaps = 29/335 (8%) Query: 24 AKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKH 83 A + A ++ V + ++ ++ H+A P + Sbjct: 15 AIRVFRAANELGIKTVAIWAEEDKLALHRFKADESYQVGRGPHLARDLG-------PIES 67 Query: 84 EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + + L D I P +G L E A + F+G +K Sbjct: 68 YLSIDEVIRVAKLSGADAIHPG-YGLLSESPEFVDACNKAGIIFIGPKADTMRQLGNKVA 126 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 + L G+ + P + A++ + +G P+ +K + G G+ + SE Sbjct: 127 ARNLAISVGVPVVPATEPLPDDMAE--VAKMAAAIGYPVMLKASWGGGGRGMRVIRSEAD 184 Query: 204 YAIAVDLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 A V A +V +E+ ++ R +E +LG+ + E + Sbjct: 185 LAKEVTEAKREAMAAFGKDEVYLEKLVERARHVESQILGDTHGNVVHLFERDCSVQ---- 240 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE-NEVVINE 315 ++ + ++ ++ A +++ G V+ + + + E Sbjct: 241 ---RRNQKVVERAPAPYLSEAQRQELAAYSLKIAGATNYIGAGTVEYLMDADTGKFYFIE 297 Query: 316 INTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 +N + +G+ +++ A Sbjct: 298 VNPRIQVEHTVT----EVVTGIDIVKAQIHILDGA 328 >ref|NP_214048.1| (NC_000918) pyruvate carboxylase n-terminal domain [Aquifex aeolicus] pir||A70432 biotin carboxylase (EC 6.3.4.14) [similarity] - Aquifex aeolicus gb|AAC07446.1| (AE000744) pyruvate carboxylase n-terminal domain [Aquifex aeolicus] Length = 472 Score = 192 bits (489), Expect = 4e-48 Identities = 55/329 (16%), Positives = 114/329 (33%), Gaps = 24/329 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ + I + + + Y H+ L A + P Sbjct: 4 KVLVANRGEIAVRIIRACKELGIPTVAIYNEVESTARHVKLADEAYMIGTDPLDTYLNKQ 63 Query: 89 DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLL 148 N D I P +G L E+ M A + F+G DK +K ++ Sbjct: 64 RIINLALEVGADAIHPG-YGFLAENAEFAKMCEEAGITFIGPHWKVIELMGDKARSKEVM 122 Query: 149 RDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV 208 + AG+ + P + + ++G P+ +K G G+ +EE+ Sbjct: 123 KKAGVPVVPGSDGVL--KSLEEAKALAREIGYPVLLKATAGGGGRGIRICRNEEELVKNY 180 Query: 209 DLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYI 261 + A +++E+ I+ + IE VLG+ + GE + Sbjct: 181 EQASREAEKAFGRGDLLLEKFIENPKHIEYQVLGDKHGNVIHLGER-------DCSIQRR 233 Query: 262 DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG 321 ++ ++ + PE + I +A + +G ++ E + E+NT Sbjct: 234 NQKLVEIAPSLILTPEKREYYGNIVTKAAKEIGYYNAGTMEFIADQEGNLYFIEMNTRIQ 293 Query: 322 FTNISMYPKLWQASGLGYTDLITRLIELA 350 + P +G+ D++ I++A Sbjct: 294 VEH----PVSEMVTGI---DIVKWQIKIA 315 >ref|NP_269044.1| (NC_002737) putative carbamoylphosphate synthetase [Streptococcus pyogenes] [Streptococcus pyogenes M1 GAS] gb|AAK33765.1| (AE006533) putative carbamoylphosphate synthetase [Streptococcus pyogenes M1 GAS] Length = 1058 Score = 192 bits (488), Expect = 5e-48 Identities = 56/354 (15%), Positives = 120/354 (33%), Gaps = 51/354 (14%) Query: 2 EKLRVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 K + ++ G+ E + + + AI K+ ++ +++ + + S Sbjct: 550 NKESILVLGSGPIRIGQGVEFDYATVHSV---KAIQKAGYEAIIMNSNPETVSTDFSVS- 605 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + + + + +I GQ L Sbjct: 606 ------DKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQTAIN-----------------L 642 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L A + +G+ V D+D+ ++ L++ G+ T T + Sbjct: 643 AQALSEAGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEA----AK 698 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVL 234 K+G P+ V+P+ + V ++E + A + ++V+ I G+E E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENKEDLREYIRTAVKASPEHPILVDSYIFGKECEVDAI 758 Query: 235 GNDNPQAST-CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 + E + + ++ D V P ++ +I + I + L Sbjct: 759 SDGKSVLIPGIMEHIERAGVHS-------GDSMAVYPPQQLSKQIQETIAEYTKRLAIGL 811 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 C GM V + +V + E+N T P L + +G+ + T+LI Sbjct: 812 NCIGMMNVQF-VIKNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 860 Score = 175 bits (443), Expect = 9e-43 Identities = 53/357 (14%), Positives = 117/357 (31%), Gaps = 55/357 (15%) Query: 5 RVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLL 59 ++ ++ G++AE + + A+ + + V+L+ + Sbjct: 9 KIMVIGSGPIIIGQAAEFDYA---GTQACLALKEEGYKVILVNSNPATIMTD-------- 57 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL--- 116 +A L D I P + G G + ++ Sbjct: 58 --------------KEIADKVYIEPLTLEFVNRIIRKERPDAILPTLGGQTGLNMAMALS 103 Query: 117 -QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVE 175 G+L + +G+ + A D+D+ K+L+++ I + + Sbjct: 104 KAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIVKTVDEAVT----FA 159 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGR-EIECA 232 +G P+ V+PA G +SEE+ + + + ++E+ I G EIE Sbjct: 160 RDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERSIAGFKEIEYE 219 Query: 233 VLGNDNPQASTC--GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 V+ + A E + D ++ N +R +++ Sbjct: 220 VMRDSADNALVVCNMENFDPVGIHT-------GDSIVFAPTQTLSDIENQMLRDASLKII 272 Query: 291 QTLGCAGMARVDVFLTPEN-EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 + L G V + L P + + + E+N ++ +A+G L ++ Sbjct: 273 RALKIEGGCNVQLALDPYSFKYYVIEVNPRVSRSSA----LASKATGYPIAKLAAKI 325 >ref|NP_509293.1| (NM_076892) Propionyl-coA carboxylase alpha chain precursor [Caenorhabditis elegans] pir||T16187 hypothetical protein F27D9.5 - Caenorhabditis elegans gb|AAA93384.1| (U49829) Hypothetical protein F27D9.5 [Caenorhabditis elegans] Length = 724 Score = 191 bits (487), Expect = 6e-48 Identities = 57/330 (17%), Positives = 120/330 (36%), Gaps = 25/330 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQ-L 87 + +R ++ I + + + + H+ + A + + P + Sbjct: 51 KILIANRGEIACRVIKTARAMGIKTVAVHSDVDSNSLHVKMADEAVCVGEAPTAKSYLRA 110 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + P +G L E+ L A F+G + A DK +K++ Sbjct: 111 DRILQAVEDTGAQAVHPG-YGFLSENTKFAAELEKAGAKFIGPNSKAILDMGDKIHSKKI 169 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 A +++ P A+ +V +G P+ +K + G G+ +++Q Sbjct: 170 ATAARVSMIPGYDGEIAD--EDMCVKVSRDIGYPVMIKASAGGGGKGMRVAWNDKQAREG 227 Query: 208 VDLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 L+ + D +++VE+ I R IE VL + + A E + K Sbjct: 228 YRLSKQEAASSFGDDRMLVEKFIDNPRHIEMQVLCDKHGNALWLNER--ECSIQRRNQKV 285 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 I+E + V P E+ K+ AVQ + +G V+ + + E+NT Sbjct: 286 IEEAPSSFVPP-----EMRRKMGEQAVQLAKAVGYDSAGTVEFLVDSQRNFYFLEMNTRL 340 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELA 350 + P +G+ D++ +++ ++ Sbjct: 341 QVEH----PITECITGI---DIVQQMLRVS 363 >gb|AAF09095.1|AF068759_1 (AF068759) pyruvate carboxylase [Lactococcus lactis subsp. lactis] Length = 1137 Score = 191 bits (487), Expect = 6e-48 Identities = 52/322 (16%), Positives = 107/322 (33%), Gaps = 23/322 (7%) Query: 31 IDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ--VPGKHEHQLI 88 + +R ++ + + +S + Y + H + + Q P + Sbjct: 5 LVANRGEIAVRVFRACNELGLSTVAVYAREDEYSVHRFKADESYLIGQGKKPIDAYLDID 64 Query: 89 DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLL 148 D D I P +G L E+ +R A L FVG ++ DK K Sbjct: 65 DIIRVALESGADAIHPG-YGLLSENLEFATKVRAAGLVFVGPELHHLDIFGDKIKAKAAA 123 Query: 149 RDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV 208 +A P I T E G P+ +K A G G+ ++ + Sbjct: 124 DEA---QVPGIPGTNGAVDIDGALEFAQTYGYPVMIKAALGGGGRGMRVARNDAEMHDGY 180 Query: 209 DLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYI 261 A ++ VE+ I+ + IE +LG+ + E + Sbjct: 181 ARAKSEAIGAFGSGEIYVEKYIENPKHIEVQILGDSHGNIVHLHERDCSVQ-------RR 233 Query: 262 DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG 321 ++ ++ ++PE ++I AV+ + +G V+ + +++ E+N Sbjct: 234 NQKVIEIAPAVGLSPEFRNEICEAAVKLCKNVGYVNAGTVEFLV-KDDKFYFIEVNPRVQ 292 Query: 322 FTNISMYPKLWQASGLGYTDLI 343 + +L + ++ Sbjct: 293 VEHT--ITELITGVDIVQAQIL 312 >ref|NP_355659.1| (NC_003062) AGR_C_4940p [Agrobacterium tumefaciens] [Agrobacterium tumefaciens str. C58 (Cereon)] ref|NP_533391.1| (NC_003304) pyruvate carboxylase [Agrobacterium tumefaciens str. C58 (U. Washington)] gb|AAK88444.1| (AE008185) AGR_C_4940p [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAL43707.1| (AE009219) pyruvate carboxylase [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 1174 Score = 191 bits (487), Expect = 7e-48 Identities = 44/335 (13%), Positives = 102/335 (30%), Gaps = 29/335 (8%) Query: 24 AKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKH 83 A + A ++ V + ++ ++ H+A P + Sbjct: 36 AIRVFRAANELGIKTVAIWAEEDKLSLHRFKADESYQVGRGPHLAKDMG-------PIES 88 Query: 84 EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + + L D I P +G L E A + F+G +K Sbjct: 89 YLSIEEVIRVAKLSGADAIHPG-YGLLSESPEFVEACNKAGITFIGPTPDTMRQLGNKVA 147 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 + L + + P + + ++G P+ +K + G G+ + +E Sbjct: 148 ARNLAISVDVPVVPATNPLPDDIAE--VERMAEEIGYPVMLKASWGGGGRGMRAIRKKED 205 Query: 204 YAIAVDLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 A V A +V +E+ ++ R +E +LG+ + E Sbjct: 206 LAREVTEAKREAKAAFGKDEVYLEKLVERARHVESQILGDTHGNVVHLFER--DCSIQRR 263 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE-NEVVINE 315 + K + + ++ ++ A +++ G V+ + + + E Sbjct: 264 NQKVV-----ERAPAPYLSEAQRQELAAYSLKIAAATNYIGAGTVEYLMDADTGKFYFIE 318 Query: 316 INTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 +N + +G+ ++E A Sbjct: 319 VNPRIQVEHTVT----EVVTGIDIVKAQIHILEGA 349 >emb|CAA70282.1| (Y09061) acetyl-CoA carboxylase, biotin carboxylase subunit [Arabidopsis thaliana] Length = 539 Score = 191 bits (486), Expect = 7e-48 Identities = 54/330 (16%), Positives = 112/330 (33%), Gaps = 24/330 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ + I + + + Y D H+ L A + + P + +I Sbjct: 76 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADEAVCIGEAPSNQSYLVI 135 Query: 89 DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLL 148 + + +G L E+ M R + F+G + DK + + Sbjct: 136 PNVLSAAISRGCTMLHPGYGFLSENALFVEMCRDHGINFIGPNPDTIRVMGDKATARETM 195 Query: 149 RDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV 208 ++AG+ P + V +++G P+ + G G+ ++ + Sbjct: 196 KNAGVPTVPGSDGLL--QSTEEAVRVANEIGFPVMITATAGGGGRGMRLAKEPGEFVKLL 253 Query: 209 DLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYI 261 A + +E+ ++ R IE VL + GE + K + Sbjct: 254 QQAKSEAAAAFGNDGCYLEKFVQNPRHIEFQVLADKFGNVVHFGER--DCSIQRRNQKLL 311 Query: 262 DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG 321 +E A+ E+ + AV A ++G G+ V+ L E+NT Sbjct: 312 EE------PSPALTAELRKAMGDAAVAAAASIGYIGVGTVEFLLDXRGSFYFMEMNTRIQ 365 Query: 322 FTNISMYPKLWQASGLGYTDLITRLIELAL 351 + ++ + DLI I +A+ Sbjct: 366 VEH--PVTEM-----IYSVDLIEEQIRVAM 388 >ref|NP_470397.1| (NC_003212) highly similar to pyruvate carboxylase [Listeria innocua] emb|CAC96291.1| (AL596167) highly similar to pyruvate carboxylase [Listeria innocua] Length = 1146 Score = 191 bits (486), Expect = 8e-48 Identities = 56/340 (16%), Positives = 102/340 (29%), Gaps = 25/340 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ--VPGKH 83 I + +R ++ + + + + + Y H A + P Sbjct: 3 RIKKVLVANRGEIAIRVMRACTELKIKTVAIYSQEDTGSFHRYKSDEAYLVGAGKKPIDA 62 Query: 84 EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + + D I P +G L E+ + FVG DK Sbjct: 63 YLDIENIIEIAKESGADAIHPG-YGFLSENIEFARRCEQEGIIFVGPKSKHLDMFGDKIK 121 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 K A + + P A E K G PL +K + G G+ V S+E Sbjct: 122 AKEQALLADIPVIPGSDGPVAGIKE--VEEFGEKNGYPLMIKASLGGGGRGMRVVESKEH 179 Query: 204 YAIAVDL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 + + A + +V VE+ + + IE +LG+ + E Sbjct: 180 VKESFERASSEAKAAFGNDEVYVEKCVMNPKHIEVQILGDTHGNIVHLFER--DCSIQRR 237 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEI 316 K + +V AI E+ ++I AV+ + + V+ + +N E+ Sbjct: 238 HQKVV-----EVAPCNAITSELRNRICDAAVKLMKNVDYINAGTVEFLVEGDN-FYFIEV 291 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 N + +G+ I H Sbjct: 292 NPRVQVEHT----ITEMITGIDIVQS-QLFIADGYALHDQ 326 >ref|NP_254123.1| (NC_002516) probable biotin carboxylase subunit of a transcarboxylase [Pseudomonas aeruginosa] pir||G82966 probable biotin carboxylase subunit of a transcarboxylase PA5436 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG08821.1|AE004956_5 (AE004956) probable biotin carboxylase subunit of a transcarboxylase [Pseudomonas aeruginosa] Length = 471 Score = 191 bits (486), Expect = 9e-48 Identities = 57/331 (17%), Positives = 114/331 (34%), Gaps = 25/331 (7%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQ 86 I + +R ++ + + + + + Y H+ A S+ P Sbjct: 2 IKKILIANRGEIAVRIVRACAEMGIRSVAVYSEADRHALHVKRADEAHSIGADPLAGYLN 61 Query: 87 LIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKR 146 N D + P +G L E+ L + + F+G DK +R Sbjct: 62 PRALVNLAVESGCDALHPG-YGFLSENAELAEICAERGIKFIGPSAQVIRRMGDKTEARR 120 Query: 147 LLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAI 206 + AG+ P A+ ++G P+ +K + G G+ + S E+ Sbjct: 121 SMIAAGVPCTPGTEGNVADLAEALRE--AERIGYPVMLKATSGGGGRGIRRCNSREELEQ 178 Query: 207 A----VDLAFE--FDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTK 259 A + A + +V +E+ I + IE +L + E + Sbjct: 179 AFPRVISEATKAFGSAEVFLEKCIVNPKHIEAQILADSFGNTVHLFER-------DCSIQ 231 Query: 260 YIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTL 319 ++ ++ + PE I +AV+A + +G V+ L + EV E+NT Sbjct: 232 RRNQKLIEIAPSPQLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLL-ADGEVYFMEMNTR 290 Query: 320 PGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + + +G+ D++ I +A Sbjct: 291 VQVEHT----ITEEITGI---DVVREQIRIA 314 >ref|NP_104954.1| (NC_002678) pyruvate carboxylase [Mesorhizobium loti] dbj|BAB50740.1| (AP003003) pyruvate carboxylase [Mesorhizobium loti] Length = 1152 Score = 191 bits (485), Expect = 1e-47 Identities = 49/343 (14%), Positives = 110/343 (31%), Gaps = 38/343 (11%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA-------- 77 I + +R ++ + + + + + H + + Sbjct: 2 AITKILVANRSEIAIRVFRAANELGLKTVAIWAEEDKYSLHRFKADESYQVGRGPHLTKD 61 Query: 78 QVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAA 137 P + + + L D I P +G L E A + F+G Sbjct: 62 MGPIESYLSIEEVIRVARLSGADAIHPG-YGLLSESPEFAEACAQAGITFIGPKPDTMRR 120 Query: 138 CMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSK 197 +K + L + G+ + P + + ++ ++G P+ +K + G G+ Sbjct: 121 LGNKVAARNLAIEVGVPVIPATDPLPDDM--EAVKKLAKEIGYPVMLKASWGGGGRGMRA 178 Query: 198 VTSEEQYAIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLT 250 + SE A V A +V +E+ I+ R +E VLG+ + A Sbjct: 179 IRSEADLAREVTEGKREAKAAFGKDEVYLEKLIERARHVEVQVLGDTHGNA--------- 229 Query: 251 SDFYAYDTKYIDEDGAKVVVPAAIAP----EINDKIRAIAVQAYQTLGCAGMARVDVFLT 306 + ++ + + VV A AP +++ A++ + G V+ Sbjct: 230 --VHLFERDCSIQRRNQKVVERAPAPYLEMSQREELCGYALKIARETSYIGAGTVEFLQD 287 Query: 307 PE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 + + E+N + Q +G+ +++ Sbjct: 288 ADTGKFYFIEVNPRIQVEHTVT----EQVTGIDIVKAQIHILD 326 >ref|NP_520908.1| (NC_003295) PROBABLE BIOTIN CARBOXYLASE PROTEIN [Ralstonia solanacearum] emb|CAD16494.1| (AL646071) PROBABLE BIOTIN CARBOXYLASE PROTEIN [Ralstonia solanacearum] Length = 456 Score = 191 bits (485), Expect = 1e-47 Identities = 56/340 (16%), Positives = 108/340 (31%), Gaps = 22/340 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKHEHQL 87 + +R ++ L + + Y + ++ L A + P + Sbjct: 4 KILIANRGEIALRIQRACRELGIKTVVVYSEADKEAKYVKLADEAVCIGPAPSPLSYLNM 63 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + + I P +G L E+ + + F+G DK K+ Sbjct: 64 PAIISAAEVTDAQAIHPG-YGFLSENADFAERVEQSGFTFIGPTPDCIRLMGDKVSAKQA 122 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + +G+ P + A K+G P+ +K A G G+ V +E A Sbjct: 123 MIKSGVPCVPGSEGALPDDPKEILA-TARKVGYPVIIKAAGGGGGRGMRVVHTEAALINA 181 Query: 208 V----DLAFE--FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 V + A + +V +E+ ++ R +E VL + + A GE K Sbjct: 182 VNMTREEAGRAFGNPEVYMEKFLENPRHVEIQVLADQHRNAIWLGER--DCSMQRRHQKV 239 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 I+E I + ++I A + +G G + E E+NT Sbjct: 240 IEE-----APAPHIPRRLIERIGDRCADACKKIGYRGAGTFEFLY-ENGEFYFIEMNTRV 293 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + P +G+ R+ R + + Sbjct: 294 QVEH----PVTEMITGIDIVQEQIRVAANEKLRFRQKDVV 329 >ref|NP_350153.1| (NC_003030) Biotin carboxylase [Clostridium acetobutylicum] gb|AAK81493.1|AE007853_8 (AE007853) Biotin carboxylase [Clostridium acetobutylicum] Length = 447 Score = 190 bits (484), Expect = 1e-47 Identities = 57/332 (17%), Positives = 115/332 (34%), Gaps = 25/332 (7%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQ 86 I + +R ++ + I + + + Y + H+ L A + + + Sbjct: 2 ISKILIANRGEIAVRIIRACREMGIETVAIYSEADKESMHVYLADEAVCVGPAKTQDSYL 61 Query: 87 LIDAQNGQP-LPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 I L I P G L E+G M N+ F+G D +K + Sbjct: 62 NIGNIISATVLTKAQAIHPG-FGFLSENGKFAKMCSECNIAFIGPDAETIENMGNKAKAR 120 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 ++ AG+ + P T + +++G P+ +K + G G+ V E+ Sbjct: 121 EIMIKAGVPVVPGCEGTI--DSEDQALKEATRIGYPVMLKASAGGGGRGIRIVREEKDLI 178 Query: 206 IAVDLAFE------FDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 + A D + +E+ I + R +E +LG+ GE + Sbjct: 179 SSFRNAKSEAKAAFGDDSMYMEKFIEEPRHVEFQILGDSFGNVVYLGER--DCSIQRRNQ 236 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K ++E + E+ ++ AV+A + + ++ L E+NT Sbjct: 237 KVLEE-----APSPVMTEELRREMGEAAVRAAKAVNYKNAGTIEFLLDKHGNYYFMEMNT 291 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + +G+ DL+ I++A Sbjct: 292 RIQVEHG----ITEMVTGV---DLVKEQIKIA 316 >ref|NP_464597.1| (NC_003210) highly similar to pyruvate carboxylase [Listeria monocytogenes EGD-e] emb|CAC99150.1| (AL591977) highly similar to pyruvate carboxylase [Listeria monocytogenes] Length = 1146 Score = 190 bits (484), Expect = 1e-47 Identities = 55/340 (16%), Positives = 102/340 (29%), Gaps = 25/340 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ--VPGKH 83 I + +R ++ + + + + + Y H A + P Sbjct: 3 RIKKVLVANRGEIAIRVMRACTELKIKTVAIYSQEDTGSFHRYKSDEAYLVGAGKKPIDA 62 Query: 84 EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + + D I P +G L E+ + FVG DK Sbjct: 63 YLDIENIIEIAKESGADAIHPG-YGFLSENIEFARRCEQEGIIFVGPKSKHLDMFGDKIK 121 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 K A + + P A E K G PL +K + G G+ V S+E Sbjct: 122 AKEQALLADIPVIPGSNGPVAGIKE--VEEFGEKNGYPLMIKASLGGGGRGMRVVESKEH 179 Query: 204 YAIAVDL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 + + A + +V VE+ + + IE +LG+ + E Sbjct: 180 VKESFERASSEAKAAFGNDEVYVEKCVMNPKHIEVQILGDTHGNIVHLFER--DCSIQRR 237 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEI 316 K + +V AI E+ ++I AV+ + + V+ + ++ E+ Sbjct: 238 HQKVV-----EVAPCNAITSELRNRICDAAVKLMKNVDYINAGTVEFLVEGDD-FYFIEV 291 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 N + +G+ I H Sbjct: 292 NPRVQVEHT----ITEMITGIDIVQS-QLFIADGYALHDQ 326 >ref|NP_505977.1| (NM_073576) pyruvate carboxylase [Caenorhabditis elegans] pir||T20346 pyruvate carboxylase (EC 6.4.1.1) D2023.2 [similarity] - Caenorhabditis elegans emb|CAB02872.1| (Z81052) predicted using Genefinder~Similarity to Human pyruvate carboxylase (TR:G458236), contains similarity to Pfam domain: PF00289 (Carbamoyl-phosphate synthase (CPSase)), Score=572.0, E-value=1.3e-168, N=1; PF00364 (Biotin-requiring enzymes), Scor> gb|AAF60326.1|AF237467_1 (AF237467) pyruvate carboxylase [Caenorhabditis elegans] Length = 1175 Score = 190 bits (484), Expect = 2e-47 Identities = 51/310 (16%), Positives = 102/310 (32%), Gaps = 27/310 (8%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSL--AQVPGKHEHQ 86 + +R ++ + + + + + Y + H A + P Sbjct: 34 KVMVANRGEIAIRVFRALTELNKTSVAIYAEQDKNSMHRLKADEAYLVGKGLPPVAAYLT 93 Query: 87 LIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKR 146 + +D I P +G L E + A + F+G A DK ++ Sbjct: 94 IDQIIETALKHNIDAIHPG-YGFLSERSDFAAACQNAGIVFIGPSPDVMARMGDKVAARQ 152 Query: 147 LLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAI 206 +AG+ + P E + G P+ +K A G G+ +V E+ Sbjct: 153 AAIEAGVQVVPGTPGPITTADEAV--EFAKQYGTPIILKAAYGGGGRGIRRVDKLEEVEE 210 Query: 207 AVD------LAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTK 259 A A D + VE+ ++ R IE +LG+ + + Y+ Sbjct: 211 AFRRSYSEAQAAFGDGSLFVEKFVERPRHIEVQLLGDHHGNI-----------VHLYERD 259 Query: 260 YIDEDGAKVVVP----AAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINE 315 + + VV A+ + +KI A A++ + +G V+ + + E Sbjct: 260 CSVQRRHQKVVEIAPAPALPEGVREKILADALRLARHVGYQNAGTVEFLVDQKGNYYFIE 319 Query: 316 INTLPGFTNI 325 +N + Sbjct: 320 VNARLQVEHT 329 >ref|NP_464882.1| (NC_003210) acetyl-CoA carboxylase subunit (biotin carboxylase subunit) [Listeria monocytogenes EGD-e] emb|CAC99435.1| (AL591978) acetyl-CoA carboxylase subunit (biotin carboxylase subunit) [Listeria monocytogenes] Length = 454 Score = 190 bits (483), Expect = 2e-47 Identities = 66/324 (20%), Positives = 118/324 (36%), Gaps = 23/324 (7%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQ 86 I + +R ++ + I + V + Y + HI L A + K + Sbjct: 2 IKKVLVANRGEIAVRIIRAAKELGVETVAIYSEADREALHIQLADEAYCVGPAATKDSYL 61 Query: 87 -LIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + + + L D I P +G L E+ + N+ F+G A + KDV + Sbjct: 62 NMSNIISLAVLTNCDAIHPG-YGFLAENADFAELCEDCNITFIGPSASAISQMGTKDVAR 120 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 +R AG+ I P A+ ++ K+G P+ +K G G+ +EE+ Sbjct: 121 ETMRKAGVPIVPGSQGIVAD--VEDGKKIAKKIGYPVIIKATAGGGGKGIRVAENEEKLI 178 Query: 206 IAV------DLAFEFDHKVIVEQGIKG-REIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 + A D V +E+ I+ R +E VL +++ GE Sbjct: 179 SGIHTTQQEAEAAFGDPGVYLEKYIQDFRHVEIQVLADNHGNVIHLGER--DCSIQRRLQ 236 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEIN 317 K I+E AI + K+ AV+A + + +G ++ EN E+N Sbjct: 237 KLIEES-----PSPAIDEKTRQKMGKAAVKAAKAVNYSGAGTIEFIYDHHENNFYFMEMN 291 Query: 318 TLPGFTNISMYPKLWQASGLGYTD 341 T + P +G+ Sbjct: 292 TRIQVEH----PVTELVTGIDLVK 311 >ref|NP_349267.1| (NC_003030) Pyruvate carboxylase, PYKA [Clostridium acetobutylicum] gb|AAK80607.1|AE007763_6 (AE007763) Pyruvate carboxylase, PYKA [Clostridium acetobutylicum] Length = 1144 Score = 190 bits (482), Expect = 2e-47 Identities = 53/327 (16%), Positives = 101/327 (30%), Gaps = 33/327 (10%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV---PGKHEH 85 + +R + + + I + D A + + L P Sbjct: 7 RVLVANRGE-IAIRIFRACHELGIRTVAIYSEEDKLALFRTKADESYLIGQNKGPVDAYL 65 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + + N VD I P +G L E+ A + F+G DK +K Sbjct: 66 NIDEIINLALKKGVDAIHPG-YGFLSENSEFSRRCTEAGIEFIGPTGDMMDKLGDKINSK 124 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 + AG+ P + + E G P+ VK A G G+ V EE Sbjct: 125 LAAKAAGVKTIPG--VEKPIETEQQAIEFARTCGYPVMVKAAAGGGGRGMRIVEKEEDLI 182 Query: 206 IAVDLAFE------FDHKVIVEQGIKG-REIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A A + +E+ ++G + IE VLG+ + Y+ Sbjct: 183 AACRSAKSEAKKAFGIEDIFIEKYLEGPKHIEVQVLGDKYGNI-----------VHLYER 231 Query: 259 KYIDEDGAKVVVP----AAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVIN 314 + + V+ +++ E +I A++ +++G ++ L Sbjct: 232 DCSVQRRHQKVIELTPAVSMSEEKRLEICEDALKIARSIGYRSAGTLEFLLDKHGNHYFI 291 Query: 315 EINTLPGFTNISMYPKLWQASGLGYTD 341 E+N + +G+ Sbjct: 292 EMNPRVQVEHT----ITEMVTGIDIVQ 314 >ref|NP_103843.1| (NC_002678) carbamoyl-phosphate synthase large subunit [Mesorhizobium loti] dbj|BAB49629.1| (AP002999) carbamoyl-phosphate synthase large subunit [Mesorhizobium loti] Length = 1167 Score = 189 bits (481), Expect = 3e-47 Identities = 56/390 (14%), Positives = 118/390 (29%), Gaps = 74/390 (18%) Query: 2 EKLRVGIVFGGKSA-----EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 + +V I+ GG + E + A A+ + ++ +++ + + D S+ Sbjct: 623 SRKKVVILGGGPNRIGQGIEFDYCCCHAAF---ALRDAGYEAIMINCNPETVSTDYDTSD 679 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 L A A+ +I GQ L Sbjct: 680 RLYFDP---LTAEDVLEILRAEQASGELLGVIVQFGGQTPLK-----------------L 719 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L A +P +G+ D+D ++LL GL+ V Sbjct: 720 ADALEKAGIPILGTSPDMIDLAEDRDRFQKLLHKLGLSQPK----NGIAYSVEQARLVAG 775 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV---------DLAFE-------------- 213 +LG PL V+P+ + + E + + + Sbjct: 776 ELGFPLVVRPSYVLGGRAMQIIHDESMLQSYLLDTVPGLVPEDIKQKYPNDKTGQINTLL 835 Query: 214 FDHKVIVEQGIKG-REIECAVLGNDNP-QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVP 271 + ++ + + G E++ L + S E + + ++ D A + Sbjct: 836 GKNPLLFDTYLSGAIEVDVDCLCDGKATFVSGILEHIEEAGIHS-------GDSACSLPV 888 Query: 272 AAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKL 331 ++ E+ D++ + L G+ V + + V + E+N T P + Sbjct: 889 HSLPSELVDELERQTAALARALNVGGLMNVQYAI-KDGTVYVLEVNPRASRT----VPFV 943 Query: 332 WQASGLGYTDLITRL-----IELALERHAA 356 + G + R+ +E A + A Sbjct: 944 AKTIGRPIAKIAARIMAGETLEDAFAHYGA 973 Score = 148 bits (374), Expect = 8e-35 Identities = 54/394 (13%), Positives = 114/394 (28%), Gaps = 95/394 (24%) Query: 12 GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRP 71 G++ E + S A+ + F V+L+ +PA I P Sbjct: 21 GQACEFDYS---GTQACKALKEEGFRVILV-------------------NSNPATIMTDP 58 Query: 72 SATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ----GMLRVANLPF 127 LA D + P + G + +L G+L N+ Sbjct: 59 ---ELADATYIEPITPEVVAKIIAKERPDALLPTMGGQTALNTALSLRRMGVLDRYNVEM 115 Query: 128 VGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS----------------- 170 +G+D A D+ + + + GL + + N Sbjct: 116 IGADATAIDKAEDRALFREAMSKIGLETPKSMLANATDVKNADRKTHEAERAALKAEKPD 175 Query: 171 -------------------------------FAEVESKLGLPLFVKPANQGSSVGVSKVT 199 A+ +GLP ++P+ G Sbjct: 176 NLDAELDALETRWNLGEGDRKQRYISHAMAIAAQALDHVGLPAIIRPSFTMGGTGGGIAY 235 Query: 200 SEEQYAIAVDLAFEFDH--KVIVEQGIKG-REIECAVLGNDNPQASTC--GEIVLTSDFY 254 + ++ V + +V++E+ + G +E E V+ + E + + Sbjct: 236 NRAEFYDIVQSGLDASPTTEVLIEESVLGWKEYEMEVVRDKADNCIIVCSIENIDPMGVH 295 Query: 255 AYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA-GMARVDVFLTP-ENEVV 312 D V + + +R ++ + +G G + V + P + +V Sbjct: 296 T-------GDSITVAPALTLTDKEYQMMRNASIAVLREIGVETGGSNVQFAVNPADGRLV 348 Query: 313 INEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 + E+N ++ +A+G + +L Sbjct: 349 VIEMNPRVSRSSA----LASKATGFPIAKIAAKL 378 >ref|NP_470730.1| (NC_003212) acetyl-CoA carboxylase subunit (biotin carboxylase subunit) [Listeria innocua] emb|CAC96625.1| (AL596168) acetyl-CoA carboxylase subunit (biotin carboxylase subunit) [Listeria innocua] Length = 454 Score = 189 bits (480), Expect = 4e-47 Identities = 66/324 (20%), Positives = 118/324 (36%), Gaps = 23/324 (7%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQ 86 I + +R ++ + I + V + Y + HI L A + K + Sbjct: 2 IKKVLVANRGEIAVRIIRAAKELGVETVAIYSEADKEALHIQLADEAYCVGPAATKDSYL 61 Query: 87 -LIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + + + L D I P +G L E+ + N+ F+G A + KDV + Sbjct: 62 NMSNIISLAVLTNCDAIHPG-YGFLAENADFAELCEDCNITFIGPSASAISQMGTKDVAR 120 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 +R AG+ I P A+ ++ K+G P+ +K G G+ +EE+ Sbjct: 121 ETMRKAGVPIVPGSQGIVAD--VEDGKKIAKKIGYPVIIKATAGGGGKGIRVAENEEKLI 178 Query: 206 IAVD------LAFEFDHKVIVEQGIKG-REIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 + A D V +E+ I+ R +E VL +++ GE Sbjct: 179 SGIQTTQQEAEAAFGDPGVYLEKYIQDFRHVEIQVLADNHGNVIHLGER--DCSIQRRLQ 236 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEIN 317 K I+E AI + K+ AV+A + + +G ++ EN E+N Sbjct: 237 KLIEES-----PSPAIDEKTRQKMGKAAVKAAKAVNYSGAGTIEFIFDHHENNFYFMEMN 291 Query: 318 TLPGFTNISMYPKLWQASGLGYTD 341 T + P +G+ Sbjct: 292 TRIQVEH----PVTELVTGIDLVK 311 >gb|AAA88512.1| (M22631) alpha-propionyl-CoA carboxylase (EC 6.4.1.3) [Rattus norvegicus] Length = 721 Score = 189 bits (480), Expect = 4e-47 Identities = 56/331 (16%), Positives = 115/331 (33%), Gaps = 25/331 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQ-L 87 + +R ++ I + + + + H+ + A + P + + Sbjct: 58 KILIANRGEIACRVIKTCRKMGIRTVAIHSDVDASSVHVKMADEAVCVGPAPTSKSYLNM 117 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + P +G L E+ L ++ F+G D A A DK +K L Sbjct: 118 DAIMEAIKKTGAQAVHPG-YGFLSENKEFAKCLAAEDVTFIGPDTHAIQAMGDKIESKLL 176 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + A +N P + + ++G P+ +K + G G+ +E+ Sbjct: 177 AKRAKVNTIPGFDGVLKDADEAV--RIAREIGYPVMIKASAGGGGKGMRIPWDDEETRDG 234 Query: 208 VDLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 + + D ++++E+ I R IE VLG+ + A E + K Sbjct: 235 FRFSSQEAASSFGDDRLLIEKFIDNPRHIEIQVLGDKHGNALWLNER--ECSIQRRNQKV 292 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E + + PE + AV + + + V+ + + E+NT Sbjct: 293 VEEAPSIF-----LDPETRRAMGEQAVAWPKAVKYSSAGTVEFLVDSQKNFYFLEMNTRL 347 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELAL 351 + P +GL DL+ +I +A Sbjct: 348 QVEH----PVTECITGL---DLVQEMILVAK 371 >ref|NP_248384.1| (NC_000909) carbamoyl-phosphate synthase, large subunit (carB2) [Methanococcus jannaschii] pir||D64472 carbamoyl-phosphate synthase, pyrimidine-specific, large subunit (EC 6.3.-.-) - Methanococcus jannaschii gb|AAB99391.1| (U67578) carbamoyl-phosphate synthase, large subunit (carB2) [Methanococcus jannaschii] Length = 618 Score = 188 bits (479), Expect = 5e-47 Identities = 59/354 (16%), Positives = 126/354 (34%), Gaps = 48/354 (13%) Query: 2 EKLRVGIVFGGKSA-----EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 ++ +V I+ G E + S A A+ + + +++ + + D S Sbjct: 83 DRKKVIIIGSGPIRIGQGIEFDYSSVHAV---LALKEMGIEAIIINNNPETVSTDYDTS- 138 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L + E L V V F G + ++ Sbjct: 139 ------DKLYFEPITFEEVLNIAEREKEKG--------ELLGVIVQF---GGQTAINLAM 181 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L+ A + +G+ A D++ +LL+ + A T E+ Sbjct: 182 --KLKNAGVNILGTTPENINAAEDREEFSKLLKKLNIPQAEGGTAYTKEEA----LEIAK 235 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFD--HKVIVEQGI-KGREIEC-A 232 ++G P+ V+P+ + V SE++ ++ A + H V++++ + E++ A Sbjct: 236 RIGYPVLVRPSYVLGGRAMQIVYSEDELIEYMEEAVKVSEEHPVLIDKFLEDAIELDVDA 295 Query: 233 VLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 V ++ E + + ++ D A V+ P + EI D + + + Sbjct: 296 VCDGESVLIGAIMEHIEEAGVHS-------GDSATVIPPQTLPKEIIDTVIDYTAKLARA 348 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 L G+ V + + V + E N T P + ++ G+ L T++ Sbjct: 349 LNIVGLLNVQYAV-KDGVVYVLEANPRASRT----VPYVSKSVGIPLAKLATKI 397 >ref|NP_349251.1| (NC_003030) Carbamoylphosphate synthase large subunit [Clostridium acetobutylicum] gb|AAK80591.1|AE007762_1 (AE007762) Carbamoylphosphate synthase large subunit [Clostridium acetobutylicum] Length = 1065 Score = 188 bits (479), Expect = 5e-47 Identities = 49/352 (13%), Positives = 111/352 (30%), Gaps = 51/352 (14%) Query: 4 LRVGIVFGGKSA-----EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYL 58 ++ ++ G E + AI ++ + +++ + + D + Sbjct: 554 KKIVVIGSGPIRIGQGIEFDYCCVHGVW---AIKEAGYKSIIINNNPETVSTDFDTA--- 607 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118 D + + + + +I GQ L Sbjct: 608 ----DKLYFESLYIDNVMNIIEKEKPEGVIVQFGGQTAIN-----------------LAD 646 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 L + +G+ + D++ LL++ + A + +T + E+ Sbjct: 647 KLYKNGVKILGTSFESIDLAEDREKFSELLKELNIPQAKGMAVTSMEEAYEAVKEI---- 702 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFD--HKVIVEQGIKGREIECAVLGN 236 G P+ V+P+ + V + + A H V++++ IKG EIE + + Sbjct: 703 GYPVIVRPSYVIGGRAMQVVYDKLALQKYMTEAVTLSTEHPVLIDKYIKGTEIEVDTISD 762 Query: 237 DNPQAST-CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 E + + ++ D + + E+ DK+ + L Sbjct: 763 GENILIPGIMEHIERTGVHS-------GDSITMYPYHTLPKEVVDKLVKYTKSLAKALEV 815 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 G+ + EN V + E+N T P L + +G+ L ++ Sbjct: 816 KGLMNIQYVYDGEN-VYVIEVNPRASRT----VPILSKVTGVPMVKLAVEIL 862 Score = 159 bits (402), Expect = 4e-38 Identities = 52/358 (14%), Positives = 118/358 (32%), Gaps = 55/358 (15%) Query: 4 LRVGIVFGGKS-----AEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYL 58 +V I+ G + AE + S A+ + + VL+ + S ++ Sbjct: 8 KKVLIIGSGPNNIGQAAEFDYS---GTQACKAVKEEGIETVLVNSNPATIMTDSHIADK- 63 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL-- 116 + + P + D I G + ++ Sbjct: 64 --------VYIEPLTEEAVEK-------------IIEKERPDGILAGFGGQTALNLAMNL 102 Query: 117 --QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 G+L N+ +G + A D++ K L+ + + I T + + Sbjct: 103 NDAGVLDKYNVRLLGINSEAIKKAEDREEFKNLMEEIDEPVPKSIIATHIDE----CIDF 158 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKG-REIEC 231 +K GLP+ ++PA G ++ E+ D + ++++EQ + G +E+E Sbjct: 159 VNKFGLPVIIRPAFTLGGTGGGIASTMEELKEICDRGIKMSPIGQILLEQSVAGWKELEY 218 Query: 232 AVLGNDNPQASTC--GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 V+ + E + + D + + +R A++ Sbjct: 219 EVMRDAKDNCIIVCNMENLDPVGVHT-------GDSIVTAPSQTLTDKEYHMLRHSALKI 271 Query: 290 YQTLGCAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 + L G + L P+ N+ ++ E+N ++ +A+G + ++ Sbjct: 272 IRNLKIEGGCNIQFALNPKSNDYIVIEVNPRVSRSSA----LASKAAGYPIAKIAAKI 325 >pir||T43735 pyruvate carboxylase (EC 6.4.1.1) [validated] - yellow fever mosquito gb|AAB64306.1| (L36530) pyruvate carboxylase [Aedes aegypti] Length = 1195 Score = 188 bits (479), Expect = 6e-47 Identities = 55/330 (16%), Positives = 103/330 (30%), Gaps = 44/330 (13%) Query: 24 AKNIVDAIDKSRFDVVLLGIDKQG-QWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK 82 A + A ++ V + ++ H A + A + S + +V + Sbjct: 50 AIRVFRACNELGIRSVAVYSEQDKMHMHRQKADESYMVGKGLAPVEAYLSIPEIIRVCKE 109 Query: 83 HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKD 142 ++ VD + P +G L E + A L F+G DK Sbjct: 110 ND--------------VDAVHPG-YGFLSERSDFAQAVIDAGLRFIGPSPKVVQQMGDKV 154 Query: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPAN---QGSSVGVSKVT 199 ++ +AG+ I P + K GLP+ K A V K+ Sbjct: 155 AARKAAIEAGVPIVPGTDGPVT--TKEEALDFCKKHGLPVIFKAAYGGGGRGMRVVRKME 212 Query: 200 SEEQ-YAIAVDLAFE--FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYA 255 E + A A + + +E+ I+ R IE +LG+ + Sbjct: 213 EVEDNFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNV-----------VHL 261 Query: 256 YDTKYIDEDGAKVVVP----AAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEV 311 Y+ + + VV + E+ DK+ AV+ + +G V+ Sbjct: 262 YERDCSVQRRHQKVVEIAPAPRLPREVRDKMTEYAVKLAKHVGYENAGTVEFLCDESGNF 321 Query: 312 VINEINTLPGFTNISMYPKLWQASGLGYTD 341 E+N + + +G+ Sbjct: 322 YFIEVNARLQVEHTVT----EEITGIDLVQ 347 >ref|NP_239976.1| (NC_002528) carbamoyl-phosphate synthase large chain [Buchnera sp. APS] sp|P57244|CARB_BUCAI Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate synthetase ammonia chain) dbj|BAB12862.1| (AP001118) carbamoyl-phosphate synthase large chain [Buchnera sp. APS] Length = 1079 Score = 188 bits (478), Expect = 7e-47 Identities = 43/350 (12%), Positives = 108/350 (30%), Gaps = 52/350 (14%) Query: 2 EKLRVGIVFGGKSA-----EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 ++ I+ GG + E + A A+ + F+ +++ + + D S Sbjct: 558 NNKKIIILGGGPNRIGQGIEFDYCCVHA---AQALREDGFEAIMVNCNPETVSTDYDIS- 613 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L V + +I GQ L Sbjct: 614 ------DRLYFEPITLENVLEIVRIEKPKGVIIQYGGQTPLK-----------------L 650 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 +P +G+ + ++ ++ + L T+ + + Sbjct: 651 AHEFEKEGVPIIGTSPDSIDTAENRYRFQKTVNKLRLQQPLNATVLTLDEAY----KKAD 706 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIK-GREIECAV 233 +G P+ V+P+ + V + ++ ++++Q + E++ Sbjct: 707 IIGYPIMVRPSYVLGGRAMEIVYEPYGLENYFKTTLKKNNTTPILLDQYLDYATEVDVDA 766 Query: 234 LGNDN-PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + + E + + ++ D A + + ++ ++IR + Sbjct: 767 ICDGETVLIGGIMEHIEQAGVHS-------GDSACSLPAYTLTSKVQNEIRRQVKKLAFE 819 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDL 342 L G+ + + N++ I E+N T P + +A GL + Sbjct: 820 LSVKGLMNIQFAI-KNNKIYIIEVNPRAART----VPFVSKAIGLALAKI 864 Score = 161 bits (408), Expect = 1e-38 Identities = 48/360 (13%), Positives = 119/360 (32%), Gaps = 57/360 (15%) Query: 4 LRVGIVFG------GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNY 57 ++ ++ G G++ E + S A+ + + ++LL Sbjct: 7 IKSILILGAGPIVIGQACEFDYS---GTQACKALKEEGYRIILL---------------- 47 Query: 58 LLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ 117 +PA I P V H + D + P + G + +L+ Sbjct: 48 ---NSNPATIMTDPDMADATYVEPIHW---EIVEKIIQKEKPDALLPTMGGQTALNCALE 101 Query: 118 ----GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAE 173 G+L+ + +G+ V A ++ + + ++ L A + Sbjct: 102 LDHKGILKKYGVQIIGATVDAIKKAENRKLFEHSMKKLNLETAKCGIAHNIQEAFL---- 157 Query: 174 VESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVD--LAFEFDHKVIVEQGIKG-REIE 230 V + +G P ++P+ G + E++ + L ++++++ + G +E E Sbjct: 158 VLNNVGFPCIIRPSFTMGGHGGGIAYNHEEFEKICERGLELSPSTELLIDESLIGWKEYE 217 Query: 231 CAVLGNDNPQASTC--GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQ 288 V+ + N E + + D V + + +R ++ Sbjct: 218 MEVVRDKNDNCIIVCSIENLDPMGIHT-------GDSITVAPAQTLTDKEYQVMRNASMS 270 Query: 289 AYQTLGCA-GMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 + +G G + V + +++ E+N ++ +A+G + +L Sbjct: 271 ILREIGVETGGSNVQFAINPKNGRMIVIEMNPRVSRSSA----LASKATGFPIAKIAAKL 326 >gb|AAA53140.1| (U08469) 3-methylcrotonyl-CoA carboxylase, biotin-carrier domain [Glycine max] Length = 674 Score = 188 bits (478), Expect = 7e-47 Identities = 55/308 (17%), Positives = 106/308 (33%), Gaps = 26/308 (8%) Query: 52 SDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQ-LIDAQNGQPLPTVDVIFPIVHGTL 110 + Y D H+A A + P + + + I P +G L Sbjct: 1 QTVAVYSDADRDSLHVATADEAIRIGPPPARLSYLNGASIVDAAIRSGAQAIHPG-YGFL 59 Query: 111 GEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS 170 E + + L F+G A DK +KR++ AG+ + P + + Sbjct: 60 SESADFAKLCEESGLTFIGPPASAIRDMGDKSASKRIMGAAGVPLVPGYHGYDQDIEKMK 119 Query: 171 FAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV------DLAFEFDHKVIVEQGI 224 ++G P+ +KP + G G+ V + +++ + A + +++E+ I Sbjct: 120 LE--ADRIGYPVLIKPTHGGGGKGMRIVHTPDEFVESFLAAQREAAASFGVNTILLEKYI 177 Query: 225 -KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIR 283 + R IE + G+ + E K I+E I+ + ++ Sbjct: 178 TRPRHIEVQIFGDKHGNVLHLYER--DCSVQRRHQKIIEE-----APAPNISADFRAQLG 230 Query: 284 AIAVQAYQTLGCAGMARVDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDL 342 AV A + + V+ + +E E+NT + P G DL Sbjct: 231 VAAVSAAKAVNYYNAGTVEFIVDTVSDEFYFMEMNTRLQVEH----PVTEMIVG---QDL 283 Query: 343 ITRLIELA 350 + I +A Sbjct: 284 VEWQILVA 291 >pir||S71009 biotin carboxylase protein A2 - Saccharopolyspora erythraea emb|CAA63311.1| (X92557) biotin carboxylase and biotin carboxyl carrier protein [Saccharopolyspora erythraea] Length = 591 Score = 188 bits (478), Expect = 7e-47 Identities = 61/336 (18%), Positives = 109/336 (32%), Gaps = 24/336 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 I + +R ++ + I V + Y D + L A L + Sbjct: 9 AIKKVLVANRGEIAVRVIRACRDVGVGSVAVYAEPDVDAVFVRLADEAFGLGGSTAAESY 68 Query: 86 QLI-DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 I + D + P +G L E+ + A L +VG A DK Sbjct: 69 LDIGKVIDAAQRSGADAVHPG-YGFLSENADFAQAVLDAGLVWVGPSPEAIRVLGDKVTA 127 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 +R+ + G + P + GLP+ +K A G G+ S E+ Sbjct: 128 RRIALEVGAPLVPGTE--EPASGADEVVAFAEEHGLPVAIKAAFGGGGRGLKVARSLEEI 185 Query: 205 AIAVDLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + A + VE+ + R +E VL + + G Sbjct: 186 PGLFESAVREAEAAFGRGECFVERYLDRPRHVEAQVLADRHGGVVVVGTR--DCSLQRRH 243 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E ++ E ++I A + G AG V+ + + + E+N Sbjct: 244 QKLVEE-----APAPFLSEEQRERIHTAAREICARAGYAGAGTVEFLVGADGTISFLEVN 298 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 T + P + +GL ++ +L A ER Sbjct: 299 TRLQVEH----PVSEETTGLDL--VVEQLRIAAGER 328 >gb|AAF37347.1|AF170808_1 (AF170808) D-alanine:D-alanine ligase [Lactococcus garvieae] Length = 198 Score = 188 bits (478), Expect = 8e-47 Identities = 77/199 (38%), Positives = 122/199 (60%), Gaps = 2/199 (1%) Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 L + L +VG L++++ MDK + + G+ P++ AEV+ KL Sbjct: 1 FLEIMRLAYVGPKYLSASSTMDKLLANDVFTAVGVPQVPYVAAYADENQEKIHAEVQDKL 60 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN-D 237 P+FVKPAN GSSVG+SKV+S E+ + +A+++D++V++EQG+ REIECAVLGN Sbjct: 61 TFPVFVKPANMGSSVGISKVSSLEELEAGLAVAYKYDNRVVIEQGVNAREIECAVLGNGG 120 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 +++ GE+V DFY Y +KYID ++ +PA I E+ +K+R A +AYQ + AG Sbjct: 121 KVRSTLPGEVVKDVDFYDYRSKYIDNK-IEMAIPADIPAEVAEKMRHYAEKAYQAMNGAG 179 Query: 298 MARVDVFLTPENEVVINEI 316 ++R D F + ++ +NEI Sbjct: 180 LSRCDFFYDQKGDIYLNEI 198 Searching..................................................done Results from round 4 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: ref|NP_286119.1| (NC_002655) Z0477 gene product [Escherichia col... 329 3e-89 ref|NP_454975.1| (NC_003198) D-alanine:D-alanine ligase A [Salmo... 327 1e-88 gb|AAB17902.2| (U39790) D-alanine:D-alanine ligase [Enterococcus... 301 5e-81 gb|AAG49141.1|AF215736_1 (AF215736) D-alanine:D-alanine ligase [... 299 3e-80 sp|Q47827|DDL_ENTHR D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 298 4e-80 ref|NP_372607.1| (NC_002758) D-alanine-D-alanine ligase [Staphyl... 290 1e-77 ref|NP_388337.1| (NC_000964) D-alanyl-D-alanine ligase A [Bacill... 290 2e-77 ref|NP_266497.1| (NC_002662) D-alanine-D-alanine ligase (EC 6.3.... 281 6e-75 emb|CAB64487.1| (AJ243059) D-ala,D-ala ligase [Streptococcus pne... 279 3e-74 sp|O54631|DDL_STRPN D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 277 8e-74 ref|NP_346110.1| (NC_003028) D-alanine--D-alanine ligase [Strept... 277 8e-74 emb|CAB64475.1| (AJ243056) D-ala,D-ala ligase [Streptococcus pne... 277 1e-73 emb|CAB64459.1| (AJ243052) D-ala,D-ala ligase [Streptococcus pne... 277 1e-73 emb|CAB64463.1| (AJ243053) D-ala,D-ala ligase [Streptococcus pne... 277 1e-73 gb|AAF36803.1|AF155139_2 (AF155139) putative D-alanyl-D-alanine ... 277 2e-73 emb|CAB64471.1| (AJ243055) D-ala,D-ala ligase [Streptococcus pne... 277 2e-73 ref|NP_359108.1| (NC_003098) D-alanine-D-alanine ligase [Strepto... 276 2e-73 sp|P25051|VANA_ENTFC VANCOMYCIN/TEICOPLANIN A-TYPE RESISTANCE PR... 275 6e-73 ref|NP_269512.1| (NC_002737) putative D-ala,D-ala ligase [Strept... 275 6e-73 gb|AAF71281.1|AF253562_5 (AF253562) ligase [Enterococcus faecalis] 274 8e-73 emb|CAB61227.1| (Y15704) vana protein [Bacillus circulans] 274 8e-73 gb|AAG37026.1|AF277571_3 (AF277571) D-alanine:D-lactate ligase [... 274 8e-73 ref|NP_464381.1| (NC_003210) D-alanine--D-alanine ligase [Lister... 273 2e-72 emb|CAB63849.1| (AJ243051) D-ala,D-ala ligase [Streptococcus pne... 272 3e-72 pdb|1E4E|A Chain A, D-Alanyl-D-Lacate Ligase 272 3e-72 sp|Q06893|VANB_ENTFC VANCOMYCIN B-TYPE RESISTANCE PROTEIN VANB (... 271 8e-72 ref|NP_470190.1| (NC_003212) D-alanine--D-alanine ligase [Lister... 271 9e-72 emb|CAB64483.1| (AJ243058) D-ala,D-ala ligase [Streptococcus pne... 271 1e-71 pdb|1E4E|B Chain B, D-Alanyl-D-Lacate Ligase 271 1e-71 pir||T35363 D-alanine--D-alanine ligase (EC 6.3.2.4) A SC66T3.06... 270 1e-71 ref|NP_485023.1| (NC_003272) D-alanyl-D-alanine ligase [Nostoc s... 270 2e-71 ref|NP_103309.1| (NC_002678) D-alanine-D-alanine ligase A [Mesor... 269 2e-71 sp|Q47758|DDL_ENTFA D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 268 6e-71 gb|AAF72363.1|AF192329_24 (AF192329) VanB [Enterococcus faecalis] 267 1e-70 gb|AAD42184.1|AF130997_5 (AF130997) D-alanine:D-lactate ligase [... 267 2e-70 gb|AAC43218.1| (U00457) D-alanine:D-alanine ligase-related prote... 266 2e-70 sp|P29753|VANC_ENTGA VANCOMYCIN C-TYPE RESISTANCE PROTEIN VANC (... 266 2e-70 ref|NP_064551.2| (NM_020166) methylcrotonoyl-Coenzyme A carboxyl... 266 2e-70 gb|AAK67986.1|AF297332_1 (AF297332) 3-methylcrotonyl-CoA carboxy... 266 2e-70 dbj|BAA99407.1| (AB029826) 3-methylcrotonyl-CoA carboxylase biot... 266 2e-70 ref|NP_294085.1| (NC_001263) D-alanine--D-alanine ligase [Deinoc... 266 3e-70 gb|AAC23582.1| (U82965) D-alanine:D-alanine ligase-related prote... 266 4e-70 emb|CAB05883.1| (Z83305) D-alanine:D-alanine ligase-related prot... 264 8e-70 gb|AAG34685.1|AF310955_1 (AF310955) ligase VanB2 [Enterococcus f... 264 9e-70 gb|AAD41882.1|AF153050_3 (AF153050) D-alanine:D-lactate ligase [... 263 2e-69 gb|AAG34683.1|AF310953_1 (AF310953) ligase VanB2 [Enterococcus f... 261 7e-69 gb|AAG34684.1|AF310954_1 (AF310954) ligase VanB2 [Enterococcus f... 261 7e-69 ref|NP_349497.1| (NC_003030) D-alanine-D-alanine ligase [Clostri... 260 2e-68 gb|AAD51060.1|AF175293_5 (AF175293) D-alanine:D-lactate ligase [... 259 4e-68 ref|NP_484982.1| (NC_003272) biotin carboxylase [Nostoc sp. PCC ... 258 5e-68 ref|NP_442228.1| (NC_000911) biotin carboxylase [Synechocystis s... 258 6e-68 sp|Q47823|DDL_ENTGA D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 258 6e-68 sp|Q9ZGN0|DDL_MYCSM D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 257 1e-67 ref|NP_220281.1| (NC_000117) UDP-N-acetylmuramate-alanine ligase... 256 2e-67 ref|NP_389369.1| (NC_000964) pyruvate carboxylase [Bacillus subt... 256 3e-67 gb|AAB88214.1| (U59234) biotin carboxylase [Synechococcus sp. PC... 255 6e-67 ref|NP_539980.1| (NC_003317) BIOTIN CARBOXYLASE [Brucella melite... 255 6e-67 ref|NP_302152.1| (NC_002677) D-alanine-D-alanine ligase A [Mycob... 254 1e-66 gb|AAD19835.1| (AF060799) D-alanyl-D-alanine ligase [Amycolatops... 253 2e-66 ref|NP_337574.1| (NC_002755) D-alanine--D-alanine ligase [Mycoba... 253 2e-66 gb|AAA60990.1| (L29638) ligase [Enterococcus casseliflavus] 253 2e-66 ref|NP_296522.1| (NC_002620) UDP-N-acetylmuramate--alanine ligas... 253 2e-66 ref|NP_243491.1| (NC_002570) pyruvate carboxylase [Bacillus halo... 252 4e-66 ref|NP_217497.1| (NC_000962) ddlA [Mycobacterium tuberculosis H3... 252 5e-66 sp|Q9PLG1|MUDD_CHLMU MURC/DDL BIFUNCTIONAL ENZYME [INCLUDES: UDP... 251 6e-66 ref|NP_440997.1| (NC_000911) D-alanine:D-alanine ligase-related ... 251 9e-66 ref|NP_076133.1| (NM_023644) methylcrotonoyl-Coenzyme A carboxyl... 250 2e-65 dbj|BAB25253.1| (AK007782) putative [Mus musculus] 249 2e-65 ref|NP_219107.1| (NC_000919) D-alanine--D-alanine ligase (ddlA) ... 249 3e-65 pdb|1EHI|A Chain A, D-Alanine:d-Lactate Ligase (Lmddl2) Of Vanco... 248 5e-65 gb|AAL27442.1|AF430807_7 (AF430807) VanE [Enterococcus faecalis] 248 8e-65 pir||T02431 acetyl-CoA carboxylase (EC 6.4.1.2), biotin carboxyl... 247 1e-64 gb|AAB18338.1| (U75444) D-Ala-D-Ala ligase2 [Leuconostoc mesente... 247 1e-64 sp|Q9ZBR9|DDL_STRCO D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 247 1e-64 sp|Q48745|DDL_LEUME D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 247 2e-64 ref|NP_354336.1| (NC_003062) AGR_C_2451p [Agrobacterium tumefaci... 247 2e-64 ref|NP_102052.1| (NC_002678) biotin carboxylase [Mesorhizobium l... 246 4e-64 ref|NP_385425.1| (NC_003047) PROBABLE BIOTIN CARBOXYLASE PROTEIN... 246 4e-64 pir||T07093 acetyl-CoA carboxylase (EC 6.4.1.2) biotin carboxyla... 244 9e-64 pir||T06279 acetyl-CoA carboxylase (EC 6.4.1.2), biotin carboxyl... 244 9e-64 gb|AAF80469.1|AF163150_1 (AF163150) acetyl-CoA carboxylase [Glyc... 244 2e-63 emb|CAB09721.1| (Z97025) pyruvate carboxylase [Bacillus subtilis] 242 4e-63 ref|NP_171808.1| (NC_003070) putative 3-methylcrotonyl-CoA carbo... 242 4e-63 ref|NP_539644.1| (NC_003317) D-ALANINE--D-ALANINE LIGASE A [Bruc... 241 6e-63 gb|AAK25989.1|AF360279_1 (AF360279) putative biotin carboxylase ... 241 7e-63 ref|NP_198386.1| (NC_003076) acetyl-CoA carboxylase [Arabidopsis... 241 8e-63 ref|NP_371638.1| (NC_002758) pyruvate carboxylase [Staphylococcu... 241 8e-63 dbj|BAA12072.1| (D83706) pyruvate carboxylase [Geobacillus stear... 241 9e-63 ref|NP_251581.1| (NC_002516) probable biotin carboxylase/biotin ... 241 9e-63 ref|NP_534077.1| (NC_003305) propionyl-coenzyme A carboxylase, a... 240 2e-62 ref|NP_539717.1| (NC_003317) PROPIONYL-COA CARBOXYLASE ALPHA CHA... 240 2e-62 gb|AAK60339.1| (AY034410) biotin carboxylase [Brassica napus] 239 4e-62 ref|NP_214014.1| (NC_000918) biotin carboxylase [Aquifex aeolicu... 239 4e-62 ref|NP_357031.1| (NC_003063) AGR_L_580GMp [Agrobacterium tumefac... 239 4e-62 ref|NP_437988.1| (NC_003078) putative propionyl-CoA carboxylase ... 238 7e-62 ref|NP_241998.1| (NC_002570) biotin carboxylase [Bacillus halodu... 235 5e-61 ref|NP_225100.1| (NC_000922) Muramate-Ala Ligase & D-Ala-D-Ala L... 235 7e-61 gb|AAF57199.1| (AE003779) CG2118 gene product [Drosophila melano... 234 9e-61 ref|NP_248224.1| (NC_000909) biotin carboxylase (accC) [Methanoc... 234 1e-60 pir||T44813 biotin carboxylase (EC 6.3.4.14) yngH [imported] - B... 233 2e-60 gb|AAG45427.1|AF317651_4 (AF317651) pyruvate carboxylase ATP-bin... 232 3e-60 pir||T06360 methylcrotonoyl-CoA carboxylase (EC 6.4.1.4) biotin ... 232 6e-60 ref|NP_283408.1| (NC_003116) putative acetyl-CoA carboxylase bio... 231 1e-59 ref|NP_102581.1| (NC_002678) propionyl-CoA carboxylase alpha cha... 230 1e-59 ref|NP_277017.1| (NC_000916) biotin carboxylase [Methanothermoba... 230 2e-59 ref|NP_274857.1| (NC_003112) acetyl-CoA carboxylase, biotin carb... 229 2e-59 gb|AAH06915.1|AAH06915 (BC006915) Similar to Propionyl Coenzyme ... 228 6e-59 ref|NP_300241.1| (NC_002491) biotin carboxylase [Chlamydophila p... 228 8e-59 ref|NP_252890.1| (NC_002516) D-alanine-D-alanine ligase A [Pseud... 227 9e-59 ref|NP_219627.1| (NC_000117) Biotin Carboxylase [Chlamydia trach... 227 1e-58 ref|NP_253535.1| (NC_002516) biotin carboxylase [Pseudomonas aer... 227 1e-58 gb|AAL02364.1| (AY046947) propionyl CoA-carboxylase alpha-subuni... 227 1e-58 ref|NP_224391.1| (NC_000922) Biotin Carboxylase [Chlamydophila p... 227 2e-58 ref|NP_372050.1| (NC_002758) acetyl-CoA carboxylase [Staphylococ... 227 2e-58 gb|AAF09095.1|AF068759_1 (AF068759) pyruvate carboxylase [Lactoc... 227 2e-58 dbj|BAB16297.1| (AB039884) acetyl-CoA carboxylase biotin carboxy... 227 2e-58 ref|NP_470397.1| (NC_003212) highly similar to pyruvate carboxyl... 226 3e-58 ref|NP_036876.1| (NM_012744) pyruvate carboxylase [Rattus norveg... 226 3e-58 gb|AAB31500.1| (S72370) pyruvate carboxylase; pyruvate:carbon di... 226 3e-58 pir||S68252 pyruvate carboxylase (EC 6.4.1.1) precursor - rat >g... 226 3e-58 sp|P11498|PYC_HUMAN Pyruvate carboxylase, mitochondrial precurso... 225 4e-58 ref|NP_032823.1| (NM_008797) pyruvate decarboxylase [Mus musculu... 225 5e-58 pir||A34337 propionyl-CoA carboxylase (EC 6.4.1.3) alpha chain p... 225 5e-58 ref|NP_464597.1| (NC_003210) highly similar to pyruvate carboxyl... 225 6e-58 ref|NP_000273.1| (NM_000282) Propionyl-Coenzyme A carboxylase, a... 225 6e-58 ref|NP_439298.1| (NC_000907) D-alanine--D-alanine ligase (ddlB) ... 225 6e-58 ref|NP_357130.1| (NC_003063) AGR_L_2704p [Agrobacterium tumefaci... 225 6e-58 ref|NP_520908.1| (NC_003295) PROBABLE BIOTIN CARBOXYLASE PROTEIN... 224 8e-58 ref|NP_000911.1| (NM_000920) pyruvate carboxylase precursor [Hom... 224 8e-58 ref|NP_459135.1| (NC_003197) D-alanine-D-alanine ligase B, affec... 224 1e-57 ref|NP_293843.1| (NC_001263) acetyl-CoA carboxylase, biotin carb... 223 2e-57 ref|NP_454742.1| (NC_003198) D-alanine:D-alanine ligase B [Salmo... 223 2e-57 ref|NP_297342.1| (NC_002488) biotin carboxylase subunit of acety... 223 2e-57 ref|NP_245081.1| (NC_002663) DdlB [Pasteurella multocida] >gi|13... 222 3e-57 ref|NP_296778.1| (NC_002620) acetyl-coenzyme A carboxylase, biot... 222 4e-57 gb|AAF32338.1|AF218939_6 (AF218939) acetyl-CoA carboxylase [Baci... 222 4e-57 ref|NP_104954.1| (NC_002678) pyruvate carboxylase [Mesorhizobium... 222 4e-57 ref|NP_387384.1| (NC_003047) PROBABLE PYRUVATE CARBOXYLASE PROTE... 222 5e-57 ref|NP_253100.1| (NC_002516) D-alanine--D-alanine ligase [Pseudo... 222 5e-57 ref|NP_501777.1| (NM_069376) carbomoyl-phosphate carboxylase [Ca... 222 6e-57 emb|CAA70282.1| (Y09061) acetyl-CoA carboxylase, biotin carboxyl... 221 7e-57 ref|NP_350153.1| (NC_003030) Biotin carboxylase [Clostridium ace... 221 7e-57 ref|NP_107983.1| (NC_002678) 3-methylcrotonyl-CoA carboxylase bi... 221 8e-57 ref|NP_509293.1| (NM_076892) Propionyl-coA carboxylase alpha cha... 221 8e-57 ref|NP_355659.1| (NC_003062) AGR_C_4940p [Agrobacterium tumefaci... 221 9e-57 ref|NP_539184.1| (NC_003317) PYRUVATE CARBOXYLASE [Brucella meli... 221 1e-56 ref|NP_414634.1| (NC_000913) D-alanine-D-alanine ligase B, affec... 220 1e-56 ref|NP_009767.1| (NC_001134) Urea amidolyase (contains urea carb... 220 1e-56 gb|AAA88512.1| (M22631) alpha-propionyl-CoA carboxylase (EC 6.4.... 220 1e-56 gb|AAC44388.1| (U51439) pyruvate carboxylase [Rhizobium etli] 220 2e-56 ref|NP_243653.1| (NC_002570) acetyl-CoA carboxylase biotin carbo... 220 2e-56 ref|NP_285788.1| (NC_002655) D-alanine-D-alanine ligase B, affec... 220 2e-56 ref|NP_212334.1| (NC_001318) D-alanine--D-alanine ligase (ddlA) ... 220 2e-56 sp|P14882|PCCA_RAT PROPIONYL-COA CARBOXYLASE ALPHA CHAIN, MITOCH... 219 3e-56 ref|NP_404198.1| (NC_003143) D-alanine--D-alanine ligase B [Yers... 219 3e-56 ref|NP_505977.1| (NM_073576) pyruvate carboxylase [Caenorhabditi... 219 4e-56 ref|NP_254123.1| (NC_002516) probable biotin carboxylase subunit... 219 4e-56 gb|AAA67356.1| (U12536) 3-methylcrotonyl-CoA carboxylase precurs... 219 4e-56 pdb|1IOW| Complex Of Y216f D-Ala:d-Ala Ligase With Adp And A P... 219 5e-56 pir||T06565 acetyl-CoA carboxylase (EC 6.4.1.2) biotin carboxyla... 218 5e-56 gb|AAK97387.1|AF363615_1 (AF363615) D-alanine:D-alanine ligase 2... 218 5e-56 ref|NP_349267.1| (NC_003030) Pyruvate carboxylase, PYKA [Clostri... 218 7e-56 ref|NP_389706.1| (NC_000964) similar to biotin carboxylase [Baci... 218 8e-56 gb|AAC41643.1| (M64926) urea amidolyase [Saccharomyces cerevisiae] 218 9e-56 gb|AAG37836.1|AF295372_1 (AF295372) pyruvate carboxylase [Danio ... 217 9e-56 gb|AAB92588.1| (AF038548) pyruvate carboxylase [Corynebacterium ... 217 1e-55 ref|NP_103112.1| (NC_002678) D-alanyl-D-alanine ligase [Mesorhiz... 217 1e-55 ref|NP_009777.1| (NC_001134) converts pyruvate to oxaloacetate; ... 217 1e-55 ref|NP_386277.1| (NC_003047) PROBABLE D-ALANINE--D-ALANINE LIGAS... 217 1e-55 ref|NP_214048.1| (NC_000918) pyruvate carboxylase n-terminal dom... 217 1e-55 ref|NP_533976.1| (NC_003305) 3-methylcrotonyl-CoA carboxylase al... 217 1e-55 ref|NP_232019.1| (NC_002505) carbamoyl-phosphate synthase, large... 217 2e-55 emb|CAB87214.1| (AL163641) acetyl/propionyl CoA carboxylase alph... 217 2e-55 ref|NP_047031.1| (NC_001905) PCACA; L549.5 [Leishmania major] >g... 217 2e-55 ref|NP_250702.1| (NC_002516) probable acyl-CoA carboxylase alpha... 217 2e-55 ref|NP_540842.1| (NC_003317) acetyl-CoA carboxylase alpha chain ... 216 2e-55 ref|NP_437243.1| (NC_003078) putative methylcrotonoyl-CoA carbox... 216 2e-55 pir||T43735 pyruvate carboxylase (EC 6.4.1.1) [validated] - yell... 216 2e-55 emb|CAA42544.1| (X59890) pyruvate carboxylase [Saccharomyces cer... 216 3e-55 ref|NP_217017.1| (NC_000962) accA1 [Mycobacterium tuberculosis H... 216 3e-55 ref|NP_420982.1| (NC_002696) propionyl-CoA carboxylase, alpha su... 216 3e-55 gb|AAA34843.1| (J03889) pyruvate carboxylase (EC 6.4.1.1) [Sacch... 216 3e-55 gb|AAD34740.1| (AF132152) unknown [Drosophila melanogaster] >gi|... 216 3e-55 ref|NP_011453.1| (NC_001139) converts pyruvate to oxaloacetate; ... 216 3e-55 ref|NP_518386.1| (NC_003295) PROBABLE ACYL-COA CARBOXYLASE ALPHA... 215 4e-55 gb|AAG22289.1| (AE003831) BcDNA:GH06348 gene product [alt 1] [Dr... 215 5e-55 ref|NP_069058.1| (NC_000917) biotin carboxylase (acc) [Archaeogl... 215 6e-55 ref|NP_420691.1| (NC_002696) acetyl-CoA carboxylase, biotin carb... 215 7e-55 ref|NP_439133.1| (NC_000907) acetyl-CoA carboxylase, biotin carb... 214 8e-55 ref|NP_246028.1| (NC_002663) AccC [Pasteurella multocida] >gi|12... 214 8e-55 ref|NP_464882.1| (NC_003210) acetyl-CoA carboxylase subunit (bio... 214 1e-54 emb|CAC84690.1| (AJ306727) D-Ala:D-Lac ligase [Enterococcus faec... 214 1e-54 ref|NP_407114.1| (NC_003143) biotin carboxylase [Yersinia pestis... 214 1e-54 pir||T39734 pyruvate carboxylase (EC 6.4.1.1) [similarity] - fis... 214 1e-54 ref|NP_229950.1| (NC_002505) acetyl-CoA carboxylase, biotin carb... 213 2e-54 ref|NP_470730.1| (NC_003212) acetyl-CoA carboxylase subunit (bio... 213 2e-54 ref|NP_520963.1| (NC_003295) PROBABLE D-ALANINE--D-ALANINE LIGAS... 213 2e-54 dbj|BAA11239.1| (D78170) pyruvate carboxylase [Schizosaccharomyc... 212 3e-54 ref|NP_457756.1| (NC_003198) biotin carboxylase [Salmonella ente... 212 4e-54 ref|NP_282436.1| (NC_002163) biotin carboxylase [Campylobacter j... 212 4e-54 gb|AAA53140.1| (U08469) 3-methylcrotonyl-CoA carboxylase, biotin... 212 5e-54 emb|CAC84688.1| (AJ306726) D-Ala:D-Lac ligase [Enterococcus faec... 212 5e-54 emb|CAC19838.1| (AJ009972) pyruvate carboxylase [Aspergillus niger] 212 5e-54 pir||S71009 biotin carboxylase protein A2 - Saccharopolyspora er... 211 7e-54 ref|NP_390314.1| (NC_000964) acetyl-CoA carboxylase subunit (bio... 211 8e-54 gb|AAC69197.1| (AF097728) pyruvate carboxylase [Aspergillus terr... 211 1e-53 sp|P49787|ACCC_BACSU BIOTIN CARBOXYLASE (A SUBUNIT OF ACETYL-COA... 210 1e-53 pir||S71006 biotin carboxylase protein A1 - Saccharopolyspora er... 210 2e-53 ref|NP_232962.1| (NC_002506) D-alanine--D-alanine ligase [Vibrio... 210 2e-53 ref|NP_417722.1| (NC_000913) acetyl CoA carboxylase, biotin carb... 210 2e-53 ref|NP_220985.1| (NC_000963) PROPIONYL-COA CARBOXYLASE ALPHA CHA... 210 2e-53 ref|NP_360596.1| (NC_003103) propionyl-CoA carboxylase alpha cha... 210 2e-53 ref|NP_282187.1| (NC_002163) putative pyruvate carboxylase A sub... 210 2e-53 ref|NP_312155.1| (NC_002695) acetyl CoA carboxylase biotin carbo... 210 2e-53 gb|AAG10491.1|AF279106_53 (AF279106) predicted acetyl-CoA carbox... 209 2e-53 ref|NP_289824.1| (NC_002655) acetyl CoA carboxylase, biotin carb... 209 3e-53 gb|AAA23748.1| (M79446) biotin carboxylase [Escherichia coli] 209 3e-53 ref|NP_242487.1| (NC_002570) D-alanyl-D-alanine ligase A [Bacill... 209 3e-53 gb|AAD25800.1|AC006550_8 (AC006550) Identical to gb|U12536 3-met... 209 3e-53 gb|AAD37851.1|AF126429_1 (AF126429) JadJ [Streptomyces venezuelae] 209 4e-53 ref|NP_519642.1| (NC_003295) PROBABLE CARBAMOYL-PHOSPHATE SYNTHA... 209 5e-53 ref|NP_246444.1| (NC_002663) CarB [Pasteurella multocida] >gi|12... 209 5e-53 ref|NP_214146.1| (NC_000918) biotin carboxylase [Aquifex aeolicu... 209 5e-53 ref|NP_274851.1| (NC_003112) carbamoyl-phosphate synthase, large... 208 8e-53 ref|NP_106581.1| (NC_002678) 3-methylcrotonyl-CoA carboxylase bi... 208 8e-53 emb|CAC22142.1| (AL512902) putative acyl-CoA carboxylase complex... 208 8e-53 pdb|1DV2|A Chain A, The Structure Of Biotin Carboxylase, Mutant ... 207 1e-52 gb|AAL02056.1|AF294805_1 (AF294805) acetyl-coenzyme A carboxylas... 207 1e-52 pir||T06161 acetyl-CoA carboxylase (EC 6.4.1.2) - wheat >gi|2827... 207 1e-52 ref|NP_283414.1| (NC_003116) carbamoyl phosphate synthase large ... 207 1e-52 emb|CAC21629.1| (AL512667) putative acyl-CoA carboxylase complex... 207 2e-52 ref|NP_454677.1| (NC_003198) carbamoyl-phosphate synthase large ... 207 2e-52 sp|P14846|CARB_SALTY CARBAMOYL-PHOSPHATE SYNTHASE LARGE CHAIN (C... 206 2e-52 ref|NP_459072.1| (NC_003197) carbamoyl-phosphate synthase, large... 206 2e-52 sp|Q9TTS3|COA1_BOVIN ACETYL-COA CARBOXYLASE 1 (ACC-ALPHA) [INCLU... 206 3e-52 gb|AAF16526.1|AF191301_2 (AF191301) ADP-forming, carbamate-phosp... 206 3e-52 pdb|1CE8|A Chain A, Carbamoyl Phosphate Synthetase From Escheric... 206 3e-52 ref|NP_414574.1| (NC_000913) carbamoyl-phosphate synthase large ... 206 3e-52 ref|NP_266825.1| (NC_002662) pyruvate carboxylase (6.4.1.1) [Lac... 206 3e-52 sp|P11029|COAC_CHICK ACETYL-COA CARBOXYLASE (ACC) [INCLUDES: BIO... 206 3e-52 ref|NP_285727.1| (NC_002655) carbamoyl-phosphate synthase large ... 206 3e-52 ref|NP_372130.1| (NC_002758) acetyl-CoA carboxylase [Staphylococ... 206 3e-52 pir||T09538 acetyl-CoA carboxylase (EC 6.4.1.2) - alfalfa >gi|49... 205 4e-52 sp|Q28559|COA1_SHEEP ACETYL-COA CARBOXYLASE 1 (ACC-ALPHA) [INCLU... 205 4e-52 gb|AAB40890.1| (U35023) acyl coenzyme A carboxylase [Corynebacte... 205 4e-52 pir||S41121 acetyl-CoA carboxylase (EC 6.4.1.2) - human >gi|4523... 205 6e-52 pir||T02235 acetyl-CoA carboxylase (EC 6.4.1.2) - maize >gi|8547... 205 7e-52 prf||2009329A urea amidolyase [Pichia jadinii] 205 7e-52 pir||T06162 acetyl-CoA carboxylase (EC 6.4.1.2) - wheat (fragmen... 205 7e-52 gb|AAG40564.1|AF062308_2 (AF062308) acetyl-CoA carboxylase 2 [Ar... 205 8e-52 gb|AAC39331.1| (AF029896) acetyl-coenzyme A carboxylase [Triticu... 204 8e-52 pir||T42206 probable acyl-CoA carboxylase complex A chain - Stre... 204 9e-52 gb|AAG30191.1| (AF293442) biotin carboxylase [Streptomyces sp. R... 204 1e-51 ref|NP_174850.1| (NC_003070) acetyl-CoA carboxylase, putative [A... 204 1e-51 ref|NP_298397.1| (NC_002488) carbamoyl-phosphate synthase large ... 204 1e-51 sp|O51927|DDL_BUCAP D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 204 2e-51 pir||T42202 probable acyl-CoA carboxylase complex A chain - Stre... 204 2e-51 ref|NP_376481.1| (NC_003106) 513aa long hypothetical biotin carb... 204 2e-51 ref|NP_174849.1| (NC_003070) acetyl-CoA carboxylase, putative [A... 203 2e-51 dbj|BAA07012.1| (D34630) acetyl-CoA carboxylase [Arabidopsis tha... 203 2e-51 gb|AAF18638.2|AC006228_9 (AC006228) F5J5.19 [Arabidopsis thaliana] 203 2e-51 ref|NP_228072.1| (NC_000853) D-alanine--D-alanine ligase [Thermo... 203 2e-51 pir||A57710 acetyl-CoA carboxylase (EC 6.4.1.2) - wheat >gi|5143... 203 2e-51 gb|AAC49275.1| (U39321) acetyl-CoA carboxylase [Triticum aestivu... 203 2e-51 sp|P78992|PYC_PICPA PYRUVATE CARBOXYLASE (PYRUVIC CARBOXYLASE) (... 203 2e-51 gb|AAC41645.1| (L27074) acetyl-CoA carboxylase [Arabidopsis thal... 203 2e-51 ref|NP_266934.1| (NC_002662) biotin carboxylase (EC 6.3.4.14) [L... 203 3e-51 emb|CAC19876.1| (AJ131866) acetyl-CoA carboxylase [Brassica napus] 202 3e-51 ref|NP_070102.1| (NC_000917) carbamoyl-phosphate synthase, large... 202 4e-51 ref|NP_269044.1| (NC_002737) putative carbamoylphosphate synthet... 202 4e-51 ref|NP_356721.1| (NC_003063) AGR_L_1864p [Agrobacterium tumefaci... 202 6e-51 ref|NP_213366.1| (NC_000918) D-alanine:D-alanine ligase [Aquifex... 201 7e-51 ref|NP_371727.1| (NC_002758) carbamoyl-phosphate synthase large ... 201 9e-51 ref|NP_276131.1| (NC_000916) carbamoyl-phosphate synthase, large... 200 1e-50 pir||T51694 D-alanine--D-alanine ligase (EC 6.3.2.4) [imported] ... 200 1e-50 ref|NP_404125.1| (NC_003143) carbamoyl-phosphate synthase large ... 200 1e-50 ref|NP_344948.1| (NC_003028) acetyl-CoA carboxylase, biotin carb... 200 1e-50 ref|NP_357979.1| (NC_003098) Biotin carboxylase (a subunit of ac... 200 2e-50 ref|NP_522501.1| (NC_003296) PUTATIVE BIOTIN CARBOXYLASE PROTEIN... 199 3e-50 ref|NP_249185.1| (NC_002516) probable acyl-CoA carboxylase subun... 199 4e-50 ref|NP_284760.1| (NC_003116) D-alanine--D-alanine ligase B [Neis... 198 6e-50 ref|NP_071529.1| (NM_022193) acetyl-coenzyme A carboxylase [Ratt... 198 6e-50 pir||T07923 acetyl-CoA carboxylase (EC 6.4.1.2) A - rape (fragme... 198 7e-50 pir||T07084 acetyl-CoA carboxylase (EC 6.4.1.2) A - soybean >gi|... 198 8e-50 emb|CAB44435.1| (AJ242913) carbamoylphosphate synthase (large su... 198 8e-50 emb|CAC19875.1| (AJ131865) acetyl-CoA carboxylase [Brassica napus] 198 9e-50 ref|NP_420636.1| (NC_002696) urea amidolyase-related protein [Ca... 197 1e-49 pir||T07920 probable acetyl-CoA carboxylase (EC 6.4.1.2) - rape ... 197 1e-49 ref|NP_253444.1| (NC_002516) carbamoylphosphate synthetase large... 197 1e-49 gb|AAD53933.1|AF179611_17 (AF179611) D-alanine:D-alanine ligase ... 197 1e-49 ref|NP_269768.1| (NC_002737) putative acetyl-CoA carboxylase bio... 197 1e-49 ref|NP_000655.1| (NM_000664) acetyl-Coenzyme A carboxylase alpha... 197 1e-49 ref|NP_358746.1| (NC_003098) Carbamoylphosphate synthase (ammoni... 197 1e-49 ref|NP_345739.1| (NC_003028) carbamoyl-phosphate synthase, large... 197 1e-49 ref|NP_356380.1| (NC_003063) AGR_L_1177p [Agrobacterium tumefaci... 197 2e-49 ref|NP_273472.1| (NC_003112) D-alanine--D-alanine ligase [Neisse... 196 3e-49 ref|NP_389435.1| (NC_000964) carbamoyl-phosphate synthetase (cat... 196 3e-49 ref|NP_355054.1| (NC_003062) AGR_C_3788p [Agrobacterium tumefaci... 196 3e-49 emb|CAB95026.1| (AJ237851) D-alanine-D-alanine ligase [Prochloro... 196 4e-49 gb|AAG30411.1|AF262949_2 (AF262949) pyruvate carboxylase [Mycoba... 195 4e-49 ref|NP_207168.1| (NC_000915) biotin carboxylase (accC) [Helicoba... 195 4e-49 gb|AAF04493.2|AF157612_1 (AF157612) acetyl-CoA carboxylase 1 pre... 195 6e-49 ref|NP_532764.1| (NC_003304) D-alanine:D-alanine ligase [Agrobac... 195 8e-49 dbj|BAA93643.1| (AB025973) biotin carboxylase [Lactobacillus pla... 194 9e-49 pir||T44290 biotin carboxylase (EC 6.3.4.14) [imported] - Sulfol... 194 9e-49 ref|NP_223728.1| (NC_000921) BIOTIN CARBOXYLASE [Helicobacter py... 194 1e-48 pir||T44419 carbamoyl-phosphate synthase (glutamine-hydrolyzing)... 192 4e-48 gb|AAB62175.1| (U94527) vancomycin resistance protein B [Enteroc... 192 5e-48 ref|NP_248384.1| (NC_000909) carbamoyl-phosphate synthase, large... 192 5e-48 pir||T07081 acetyl-CoA carboxylase (EC 6.4.1.2) B - soybean (fra... 192 7e-48 ref|NP_349251.1| (NC_003030) Carbamoylphosphate synthase large s... 191 7e-48 gb|AAB67843.1| (U40341) carbamoyl phosphate synthetase large cha... 191 9e-48 emb|CAA03928.1| (AJ000109) carbamoylphosphate synthetase [Lactoc... 191 1e-47 pir||S73055 pyc protein - Mycobacterium tuberculosis >gi|560527|... 190 1e-47 ref|NP_420971.1| (NC_002696) acetyl/propionyl-CoA carboxylase, a... 190 1e-47 ref|NP_267519.1| (NC_002662) carbamoylphosphate synthetase [Lact... 190 1e-47 emb|CAB48407.1| (AJ243652) urea amidolyase homologue [Pseudomona... 190 2e-47 ref|NP_442333.1| (NC_000911) carbamoyl-phosphate synthase, pyrim... 189 3e-47 sp|P46537|CARB_BACCL CARBAMOYL-PHOSPHATE SYNTHASE, PYRIMIDINE-SP... 189 3e-47 ref|NP_217483.1| (NC_000962) pca [Mycobacterium tuberculosis H37... 189 3e-47 emb|CAA89922.1| (Z49809) unknown [Saccharomyces cerevisiae] 189 3e-47 emb|CAA72256.1| (Y11467) carbamoyl-phosphate synthase (glutamine... 188 5e-47 ref|NP_343814.1| (NC_002754) Biotin carboxylase a subunit of pro... 188 5e-47 sp|P08955|PYR1_MESAU CAD PROTEIN [INCLUDES: GLUTAMINE-DEPENDENT ... 188 6e-47 gb|AAF59156.1| (AE003839) CG8723 gene product [Drosophila melano... 188 6e-47 ref|NP_301455.1| (NC_002677) putative carbamoyl-phosphate syntha... 188 6e-47 ref|NP_359970.1| (NC_003103) D-alanine--D-alanine ligase [EC:6.3... 188 6e-47 emb|CAA80280.1| (Z22558) HFA1 [Saccharomyces cerevisiae] 188 7e-47 gb|AAB62176.1| (U94528) vancomycin resistance protein B [Enteroc... 188 8e-47 sp|P32874|HFA1_YEAST HFA1 PROTEIN 188 9e-47 emb|CAB59603.1| (AL132662) pyruvate carboxylase [Streptomyces co... 188 9e-47 gb|AAA37062.1| (J05503) carbamoyl-phosphate synthetase (E.C.6.3.... 188 9e-47 dbj|BAA24410.1| (D78165) acetyl-coenzyme A carboxylase like carb... 188 9e-47 ref|NP_228367.1| (NC_000853) carbamoyl-phosphate synthase, large... 188 1e-46 sp|P77886|CARB_LACPL CARBAMOYL-PHOSPHATE SYNTHASE, PYRIMIDINE-SP... 187 1e-46 ref|NP_280339.1| (NC_002607) biotin carboxylase; Acc [Halobacter... 187 1e-46 gb|AAB62174.1| (U94526) vancomycin resistance protein B [Enteroc... 187 1e-46 ref|NP_294391.1| (NC_001263) carbamoyl-phosphate synthase, large... 187 1e-46 ref|NP_487849.1| (NC_003272) carbamoyl phosphate synthetase larg... 187 2e-46 ref|NP_243402.1| (NC_002570) carbamoyl-phosphate synthetase (cat... 187 2e-46 gb|AAA74996.1| (U11295) carbamoyl phosphate synthetase (glutamin... 187 2e-46 ref|NP_301567.1| (NC_002677) acetyl/propionyl CoA carboxylase [a... 186 3e-46 emb|CAA55651.1| (X79049) vanA2 [Oerskovia turbata] 186 3e-46 pir||A55579 biotin carboxyl carrier protein - Mycobacterium lepr... 186 3e-46 pdb|1A9X|A Chain A, Carbamoyl Phosphate Synthetase: Caught In Th... 186 3e-46 ref|NP_215900.1| (NC_000962) Carbamoylphosphate synthase large s... 186 3e-46 ref|NP_220634.1| (NC_000963) D-ALANINE--D-ALANINE LIGASE (ddlB) ... 185 4e-46 ref|NP_281472.1| (NC_002163) carbamoyl-phosphate synthase large ... 185 6e-46 ref|NP_217802.1| (NC_000962) accA3 [Mycobacterium tuberculosis H... 185 7e-46 emb|CAB56843.1| (X99978) carbamoyl-phosphate synthase large subu... 185 7e-46 ref|NP_421346.1| (NC_002696) D-alanine--D-alanine ligase B [Caul... 184 9e-46 ref|NP_013934.1| (NC_001145) Similar to acetyl-coenzyme A carbox... 183 2e-45 gb|AAA68280.1| (M27174) carbamyl phosphate synthetase [Saccharom... 183 2e-45 ref|NP_012405.1| (NC_001142) First and second steps of pyrimidin... 183 2e-45 ref|NP_103843.1| (NC_002678) carbamoyl-phosphate synthase large ... 183 2e-45 emb|CAA60825.1| (X87371) carbamyl phosphate synthetase [Saccharo... 183 2e-45 ref|NP_281959.1| (NC_002163) putative D-alanine--D-alanine ligas... 183 2e-45 sp|Q09794|PYR1_SCHPO URA1 PROTEIN [INCLUDES: GLUTAMINE-DEPENDENT... 183 3e-45 ref|NP_539499.1| (NC_003317) D-ALANINE--D-ALANINE LIGASE [Brucel... 182 4e-45 ref|XP_002428.5| (XM_002428) similar to carbamoyl-phosphate synt... 182 4e-45 ref|NP_239976.1| (NC_002528) carbamoyl-phosphate synthase large ... 182 4e-45 gb|AAD09129.1| (AF112473) PyrABCN [Emericella nidulans] 182 4e-45 gb|AAB49636.1| (U72704) vancomycin resistance protein [Enterococ... 182 5e-45 ref|NP_004332.1| (NM_004341) carbamoyl-phosphate synthetase 2, a... 182 6e-45 ref|NP_446374.1| (NM_053922) acetyl-Coenzyme A carboxylase beta ... 181 9e-45 sp|Q91437|PYR1_SQUAC CAD PROTEIN [INCLUDES: GLUTAMINE-DEPENDENT ... 180 2e-44 pir||T30568 acetyl-CoA carboxylase (EC 6.4.1.2) - Emericella nid... 180 2e-44 ref|NP_298089.1| (NC_002488) D-alanine--D-alanine ligase B [Xyle... 180 2e-44 ref|NP_385682.1| (NC_003047) PROBABLE CARBAMOYL-PHOSPHATE SYNTHA... 179 3e-44 ref|NP_421694.1| (NC_002696) carbamoyl-phosphate synthase, large... 179 4e-44 ref|NP_213797.1| (NC_000918) carbamoyl-phosphate synthase large ... 178 7e-44 ref|NP_280547.1| (NC_002607) carbamoyl-phosphate synthase large ... 178 8e-44 ref|NP_174283.1| (NC_003070) carbamoylphosphate synthetase, puta... 178 1e-43 ref|NP_285633.1| (NC_001264) carboxylase [Deinococcus radioduran... 177 2e-43 ref|NP_389006.1| (NC_000964) carbamoyl-phosphate transferase-arg... 177 2e-43 pir||S49991 acetyl-CoA carboxylase (EC 6.4.1.2) - smut fungus (U... 176 3e-43 pir||S65074 pyrimidine synthesis protein URA1 - fission yeast (... 176 4e-43 ref|NP_355138.1| (NC_003062) AGR_C_3955p [Agrobacterium tumefaci... 176 4e-43 gb|AAA60989.1| (L29641) D-alanine-D-alanine ligase-related enzym... 175 4e-43 ref|NP_215488.1| (NC_000962) accA2 [Mycobacterium tuberculosis H... 175 4e-43 gb|AAA24455.1| (J05126) purD (EC 6.3.4.13) [Escherichia coli] 175 4e-43 gb|AAA60988.1| (L29640) D-alanine-D-alanine ligase-related enzym... 175 4e-43 ref|NP_465360.1| (NC_003210) highly similar to carbamoyl-phospha... 175 5e-43 ref|NP_418433.1| (NC_000913) phosphoribosylglycinamide synthetas... 175 5e-43 gb|AAD51318.2| (AF169248) acetylglutamate-activated carbamoyl ph... 175 5e-43 gb|AAC78719.1| (U43091) carbamoylphosphate synthetase heavy subu... 175 5e-43 ref|NP_290637.1| (NC_002655) phosphoribosylglycinamide synthetas... 175 5e-43 ref|NP_532851.1| (NC_003304) carbamoylphosphate synthase large s... 175 5e-43 emb|CAB93363.1| (AL357523) carbamoylphosphate synthetase large c... 175 5e-43 sp|P20054|PYR1_DICDI PROTEIN PYR1-3 [INCLUDES: GLUTAMINE-DEPENDE... 175 6e-43 sp|P78820|COAC_SCHPO ACETYL-COA CARBOXYLASE (ACC) [INCLUDES: BIO... 174 9e-43 gb|AAB41852.1| (U69163) D-Alanine:D-Alanine ligase [Streptococcu... 174 9e-43 ref|NP_471283.1| (NC_003212) highly similar to carbamoyl-phospha... 174 1e-42 ref|NP_539439.1| (NC_003317) CARBAMOYL-PHOSPHATE SYNTHASE LARGE ... 174 1e-42 gb|AAA20073.1| (M92156) acetyl-CoA carboxylase [Saccharomyces ce... 174 1e-42 pdb|1GSO|A Chain A, Glycinamide Ribonucleotide Synthetase (Gar-S... 174 1e-42 ref|NP_014413.1| (NC_001146) acetyl-CoA carboxylase; Acc1p [Sacc... 174 1e-42 ref|NP_245161.1| (NC_002663) PurD [Pasteurella multocida] >gi|13... 173 2e-42 dbj|BAA94293.1| (AB029444) Carbamoyl-phosphate Synthetase [Leish... 173 2e-42 pir||A48757 acetyl-CoA carboxylase (EC 6.4.1.2) - Cyclotella cry... 173 2e-42 ref|NP_214438.1| (NC_000918) carbamoyl-phosphate synthase large ... 173 2e-42 pir||S23738 pyr1-3 protein - slime mold (Dictyostelium discoideu... 173 2e-42 gb|AAD43968.1|AF119250_1 (AF119250) carbamoyl-phosphate syntheta... 173 2e-42 pir||T30820 carbamoyl-phosphate synthase (ammonia) (EC 6.3.4.16)... 173 2e-42 ref|NP_250091.1| (NC_002516) probable pyruvate carboxylase [Pseu... 173 3e-42 ref|NP_457899.1| (NC_003198) phosphoribosylglycineamide syntheta... 173 3e-42 ref|NP_503072.1| (NM_070671) Carbamoyl-phosphate synthase (CPSas... 173 3e-42 pir||T33717 carbamoyl-phosphate synthase (glutamine-hydrolyzing)... 173 3e-42 gb|AAB41856.1| (U69167) D-Alanine:D-Alanine ligase [Streptococcu... 172 4e-42 ref|NP_001084.1| (NM_001093) acetyl-Coenzyme A carboxylase beta ... 172 4e-42 ref|NP_463044.1| (NC_003197) phosphoribosylglycinamide synthetas... 172 4e-42 sp|Q99148|PUR2_YARLI BIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN AD... 172 4e-42 ref|NP_243761.1| (NC_002570) arginine specific carbamoyl-phospha... 172 5e-42 gb|AAF37343.1|AF170804_1 (AF170804) D-alanine:D-alanine ligase [... 172 5e-42 gb|AAB62520.1| (U91913) D-alanine:D-alanine ligase [Streptococcu... 172 6e-42 ref|NP_493922.1| (NM_061521) acetyl-CoA carboxylase [Caenorhabdi... 172 6e-42 gb|AAB17900.1| (U39775) D-alanine:D-alanine ligase [Enterococcus... 171 7e-42 gb|AAK28428.1|AF251259_1 (AF251259) D-alanine-D-X ligase VanD4 [... 171 8e-42 gb|AAC16915.1| (U91914) D-alanine:D-alanine ligase [Streptococcu... 171 9e-42 ref|NP_058768.1| (NM_017072) carboamyl-phosphate synthetase 1 [R... 170 1e-41 ref|NP_223393.1| (NC_000921) D-ALANINE--D-ALANINE LIGASE [Helico... 170 1e-41 gb|AAB62566.1| (AF006491) carbamoyl-phosphate synthetase III; CP... 170 2e-41 pir||S53602 carbamoyl-phosphate synthase (glutamine-hydrolyzing)... 170 2e-41 gb|AAL38923.1| (AF325676) acetyl-CoA carboxylase [Lolium multifl... 170 2e-41 gb|AAA96435.1| (L31362) carbamyl phosphate synthetase III [Squal... 170 2e-41 pir||T39898 carbamoyl-phosphate synthase (glutamine-hydrolyzing)... 170 2e-41 gb|AAF37349.1|AF170810_1 (AF170810) D-alanine:D-alanine ligase [... 170 2e-41 gb|AAC60207.1| (U65893) carbamoyl-phosphate synthetase III [Onco... 170 2e-41 ref|NP_223571.1| (NC_000921) CARBAMOYL-PHOSPHATE SYNTHASE LARGE ... 170 2e-41 gb|AAB17901.1| (U39777) D-alanine:D-alanine ligase [Enterococcus... 170 3e-41 gb|AAF37344.1|AF170805_1 (AF170805) D-alanine:D-alanine ligase [... 169 3e-41 ref|NP_441646.1| (NC_000911) glycinamide ribonucleotide syntheta... 169 3e-41 gb|AAA24785.1| (L15304) vanB2 ORF [Enterococcus faecalis] 169 3e-41 ref|NP_407179.1| (NC_003143) phosphoribosylamine--glycine ligase... 169 3e-41 gb|AAF37342.1|AF170803_1 (AF170803) D-alanine:D-alanine ligase [... 169 4e-41 ref|NP_229931.1| (NC_002505) phosphoribosylamine--glycine ligase... 169 4e-41 pir||I67805 purine synthesis multifunctional protein - mouse >gi... 169 4e-41 ref|XP_040883.1| (XM_040883) similar to CARBAMOYL-PHOSPHATE SYNT... 169 4e-41 gb|AAB17899.1| (U39778) D-alanine:D-alanine ligase [Enterococcus... 169 5e-41 ref|NP_034386.1| (NM_010256) phosphoribosylglycinamide formyltra... 168 5e-41 ref|NP_241500.1| (NC_002570) phosphoribosylglycinamide synthetas... 168 5e-41 gb|AAB62519.1| (U91912) D-alanine:D-alanine ligase [Streptococcu... 168 6e-41 ref|XP_011009.3| (XM_011009) methylcrotonoyl-Coenzyme A carboxyl... 168 6e-41 gb|AAB41853.1| (U69164) D-Alanine:D-Alanine ligase [Streptococcu... 168 9e-41 ref|NP_207532.1| (NC_000915) D-alanine:D-alanine ligase A (ddlA)... 167 2e-40 gb|AAF48639.2| (AE003503) CG18572 gene product [Drosophila melan... 167 2e-40 ref|NP_012643.1| (NC_001142) carbamyl phosphate synthetase; Cpa2... 167 2e-40 ref|NP_439049.1| (NC_000907) phosphoribosylamine--glycine ligase... 167 2e-40 pir||T46882 phosphoribosylamine--glycine ligase (EC 6.3.4.13) [i... 166 2e-40 pir||T42531 acetyl-CoA carboxylase (EC 6.4.1.2) - fission yeast ... 166 3e-40 gb|AAC53250.1| (U20892) glycinamide ribonucleotide synthetase [M... 166 3e-40 gb|AAB41851.1| (U69162) D-Alanine:D-Alanine ligase [Streptococcu... 166 3e-40 gb|AAB41855.1| (U69166) D-Alanine:D-Alanine ligase [Streptococcu... 166 3e-40 gb|AAB17897.1| (U39774) D-alanine:D-alanine ligase [Enterococcus... 166 4e-40 ref|NP_520312.1| (NC_003295) PROBABLE PHOSPHORIBOSYLAMINE--GLYCI... 166 4e-40 ref|NP_001866.1| (NM_001875) carbamoyl-phosphate synthetase 1, m... 165 4e-40 ref|NP_275136.1| (NC_003112) phosphoribosylamine--glycine ligase... 165 6e-40 gb|AAF37348.1| (AF170809) D-alanine:D-alanine ligase [Enterococc... 165 7e-40 gb|AAD18071.1| (AF129814) carbamyl phosphate synthetase II; CPS.... 165 8e-40 sp|P95803|DDL_STRMU PUTATIVE D-ALANINE--D-ALANINE LIGASE (D-ALAN... 164 1e-39 ref|NP_253542.1| (NC_002516) phosphoribosylamine--glycine ligase... 164 1e-39 pir||T30518 carbamoyl-phosphate synthase (ammonia) (EC 6.3.4.16)... 164 1e-39 gb|AAG10785.1| (AF286897) carbamoyl phosphate synthetase II [Pla... 164 1e-39 ref|NP_388535.1| (NC_000964) phosphoribosylglycinamide synthetas... 164 1e-39 sp|Q91293|CPSM_RANCA CARBAMOYL-PHOSPHATE SYNTHASE [AMMONIA], MIT... 163 2e-39 ref|NP_000810.1| (NM_000819) phosphoribosylglycinamide formyltra... 163 2e-39 ref|NP_207711.1| (NC_000915) carbamoyl-phosphate synthase (gluta... 163 2e-39 pir||T18410 carbamoyl-phosphate synthase (glutamine-hydrolyzing)... 163 3e-39 ref|NP_213510.1| (NC_000918) phosphoribosylamine-glycine ligase ... 163 3e-39 ref|NP_283078.1| (NC_003116) phosphoribosylamine--glycine ligase... 163 3e-39 dbj|BAA06809.1| (D32051) GARS protein [Homo sapiens] 161 8e-39 gb|AAG10786.1| (AF286898) carbamoyl phosphate synthetase II [Pla... 161 9e-39 gb|AAF71749.1| (AF257743) phosphoribosylglycinamide formyltransf... 161 1e-38 gb|AAB17898.1| (U39776) D-alanine:D-alanine ligase [Enterococcus... 161 1e-38 ref|NP_495838.1| (NM_063437) glutamine-dependent carbamoyl-phosp... 161 1e-38 ref|NP_299258.1| (NC_002488) glycinamide ribonucleotide syntheta... 160 1e-38 dbj|BAB63438.1| (AB058945) phosphoribosylamine-glycine ligase [S... 160 2e-38 gb|AAF37347.1|AF170808_1 (AF170808) D-alanine:D-alanine ligase [... 160 2e-38 gb|AAF04494.2|AF157613_1 (AF157613) acetyl-CoA carboxylase 2 [To... 160 2e-38 sp|P46056|CARB_TRICU CARBAMOYL-PHOSPHATE SYNTHASE, ARGININE-SPEC... 160 3e-38 pir||A64472 carbamoyl-phosphate synthase, large chain (EC 6.3.-.... 160 3e-38 dbj|BAB20832.1| (AB045609) phosphoribosylamine-glycine ligase [S... 160 3e-38 emb|CAB95892.1| (AL359988) putative acetyl/propionyl CoA carboxy... 159 4e-38 gb|AAA60991.1| (L29639) ligase [Enterococcus flavescens] 159 4e-38 ref|NP_377467.1| (NC_003106) 1049aa long hypothetical carbamoyl-... 159 4e-38 ref|NP_248381.1| (NC_000909) carbamoyl-phosphate synthase, mediu... 159 5e-38 gb|AAG09178.1| (AF174494) purine biosynthetic pathway protein AD... 158 9e-38 ref|NP_344600.1| (NC_003028) phosphoribosylamine--glycine ligase... 158 9e-38 ref|NP_444059.1| (NC_000914) Y4sG [Rhizobium sp. NGR234] >gi|249... 157 2e-37 emb|CAB07850.1| (Z93780) carbamoyl phosphate synthetase III [Tak... 157 2e-37 ref|NP_342159.1| (NC_002754) Carbamoyl-phosphate synthase large ... 157 2e-37 ref|NP_487550.1| (NC_003272) phosphoribosylamine--glycine ligase... 157 2e-37 ref|NP_187496.1| (NC_003074) unknown protein [Arabidopsis thalia... 157 2e-37 pir||A49930 carB protein homolog - Mycobacterium bovis (strain B... 156 3e-37 pir||PN0478 vancomycin resistance-conferring protein - Enterococ... 156 3e-37 ref|NP_111322.1| (NC_002689) Carbamoylphosphate synthase large s... 156 3e-37 ref|NP_268447.1| (NC_002737) phosphoribosylamine-glycine ligase ... 155 4e-37 gb|AAL00950.1|AF401666_1 (AF401666) carbamoyl-phosphate synthase... 155 6e-37 gb|AAB41857.1| (U69168) D-Alanine:D-Alanine ligase [Streptococcu... 153 2e-36 ref|NP_422008.1| (NC_002696) carbamoyl-phosphate synthase/carbox... 153 2e-36 Sequences not found previously or not previously below threshold: >ref|NP_286119.1| (NC_002655) Z0477 gene product [Escherichia coli O157:H7 EDL933] ref|NP_308458.1| (NC_002695) D-alanine-D-alanine ligase A [Escherichia coli O157:H7] ref|NP_414915.1| (NC_000913) D-alanine-D-alanine ligase A [Escherichia coli K12] sp|P23844|DDLA_ECOLI D-ALANINE--D-ALANINE LIGASE A (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||CEECDA D-alanine--D-alanine ligase (EC 6.3.2.4) A - Escherichia coli gb|AAA23671.1| (M58467) D-alanine:D-alanine ligase A [Escherichia coli] gb|AAB18104.1| (U73857) D-alanine--D-alanine ligase A [Escherichia coli] gb|AAC73484.1| (AE000144) D-alanine-D-alanine ligase A [Escherichia coli K12] gb|AAG54727.1|AE005217_5 (AE005217) Z0477 gene product [Escherichia coli O157:H7 EDL933] dbj|BAB33854.1| (AP002551) D-alanine-D-alanine ligase A [Escherichia coli O157:H7] Length = 364 Score = 329 bits (843), Expect = 3e-89 Identities = 364/364 (100%), Positives = 364/364 (100%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN Sbjct: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML Sbjct: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL Sbjct: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ Sbjct: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR Sbjct: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL Sbjct: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 Query: 361 KTTM 364 KTTM Sbjct: 361 KTTM 364 >ref|NP_454975.1| (NC_003198) D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica serovar Typhi] ref|NP_459375.1| (NC_003197) D-alanine-D-alanine ligase A [Salmonella typhimurium LT2] sp|P15051|DDLA_SALTY D-alanine--D-alanine ligase A (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) pir||CEEBDT D-alanine--D-alanine ligase (EC 6.3.2.4) A - Salmonella typhimurium gb|AAA27056.1| (M20793) D-alanine:D-alanine ligase (EC 6.3.2.4) [Salmonella typhimurium] gb|AAL19334.1| (AE008713) D-alanine-D-alanine ligase A [Salmonella typhimurium LT2] emb|CAD08835.1| (AL627266) D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica serovar Typhi] Length = 364 Score = 327 bits (839), Expect = 1e-88 Identities = 327/364 (89%), Positives = 344/364 (93%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDK+RFDVVLLGIDK GQWHV+DA NYL N Sbjct: 1 MAKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQN 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 ADDPAHIALRPSA SLAQVPGKH+HQLI+AQNGQPLPTVDVIFPIVHGTLGEDGSLQGML Sbjct: 61 ADDPAHIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 RVANLPFVGSDVL+SAACMDKDV KRLLRDAGLNIAPFITLTR NRH SFAEVES+LGL Sbjct: 121 RVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGL 180 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 PLFVKPANQGSSVGVSKV +E QY AV LAFEFDHKV+VEQGIKGREIECAVLGNDNPQ Sbjct: 181 PLFVKPANQGSSVGVSKVANEAQYQQAVALAFEFDHKVVVEQGIKGREIECAVLGNDNPQ 240 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 ASTCGEIVL S+FYAYDTKYID++GA+VVVPA I E+NDKIRAIA+QAYQTLGCAGMAR Sbjct: 241 ASTCGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMAR 300 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 VDVFLT +NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLI+RLIELALERH A+NAL Sbjct: 301 VDVFLTADNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELALERHTANNAL 360 Query: 361 KTTM 364 KTTM Sbjct: 361 KTTM 364 >gb|AAB17902.2| (U39790) D-alanine:D-alanine ligase [Enterococcus faecium] Length = 358 Score = 301 bits (772), Expect = 5e-81 Identities = 139/358 (38%), Positives = 215/358 (59%), Gaps = 10/358 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ +++GG+SAEHEVS+ SA ++++AI + + V L+ I K+GQW + D Sbjct: 1 MKITLLYGGRSAEHEVSILSAFSVLNAIYYNYYQVQLVFITKEGQWVKGPLLTEKPASKD 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 H++ PS + GK G+ ++FP++HG GEDG++QG L Sbjct: 61 VLHLSWDPSGQTEEGFTGK------VINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETL 114 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRHNISFAEVESKLGL 180 N+P+VG+ VL SA MDK +TK +L+ AG+ P++ + + F + E L Sbjct: 115 NMPYVGAGVLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLY 174 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+FVKPAN GSSVG++K + E+ A+ A+++D + IVEQGI+ REIE AVLGN++ + Sbjct: 175 PMFVKPANMGSSVGITKAENREELQNALATAYQYDSRAIVEQGIEAREIEVAVLGNEDVR 234 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 + GE+V FY Y+ KYI+ ++ +PA + E+ K + A AY LG +G++R Sbjct: 235 TTLPGEVVKDVAFYDYEAKYINNK-IEMQIPAEVPEEVYQKAQEYAKLAYTMLGGSGLSR 293 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 D FLT +NE+ +NE+N++PGFT SMYP LW+ GL Y DLI LI+L + R+ Sbjct: 294 CDFFLTNKNELFLNELNSMPGFTEFSMYPLLWENMGLKYGDLIEELIQLGMNRYHQRQ 351 >gb|AAG49141.1|AF215736_1 (AF215736) D-alanine:D-alanine ligase [Enterococcus faecium] Length = 358 Score = 299 bits (765), Expect = 3e-80 Identities = 138/358 (38%), Positives = 214/358 (59%), Gaps = 10/358 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ +++GG+SA HEVS+ SA ++++AI + + V L+ I K+GQW + D Sbjct: 1 MKITLLYGGRSAGHEVSILSAFSVLNAIYYNYYQVQLVFITKEGQWVKGPLLTEKPASKD 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 H++ PS + GK G+ ++FP++HG GEDG++QG L Sbjct: 61 VLHLSWDPSGQTEEGFTGK------VINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETL 114 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRHNISFAEVESKLGL 180 N+P+VG+ VL SA MDK +TK +L+ AG+ P++ + + F + E L Sbjct: 115 NMPYVGAGVLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLY 174 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+FVKPAN GSSVG++K + E+ A+ A+++D + IVEQGI+ REIE AVLGN++ + Sbjct: 175 PMFVKPANMGSSVGITKAENREELQNALATAYQYDSRAIVEQGIEAREIEVAVLGNEDVR 234 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 + GE+V FY Y+ KYI+ ++ +PA + E+ K + A AY LG +G++R Sbjct: 235 TTLPGEVVKDVAFYDYEAKYINNK-IEMQIPAEVPEEVYQKAQEYAKLAYTMLGGSGLSR 293 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 D FLT +NE+ +NE+N++PGFT SMYP LW+ GL Y DLI LI+L + R+ Sbjct: 294 CDFFLTNKNELFLNELNSMPGFTEFSMYPLLWENMGLKYGDLIEELIQLGMNRYHQRQ 351 >sp|Q47827|DDL_ENTHR D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAB17904.1| (U39788) D-alanine:D-alanine ligase [Enterococcus hirae] Length = 358 Score = 298 bits (764), Expect = 4e-80 Identities = 141/358 (39%), Positives = 213/358 (59%), Gaps = 10/358 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ +++GG+SAEH+VS+ SA ++++AI + + V L+ I K+GQW + + Sbjct: 1 MKITLLYGGRSAEHDVSVLSAFSVLNAIYYTYYQVQLIFISKEGQWVKGPLLTEKPTSKE 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 H+ PS G+ G+ ++FP++HG GEDG++QG L Sbjct: 61 DLHLTWDPSGKVTDGFTGR------VINPGEIKEEGTIVFPVLHGPNGEDGTIQGFLETL 114 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRHNISFAEVESKLGL 180 NLP+VG+ VL SA MDK +TK +L+ AG+ P++ + + F + E L Sbjct: 115 NLPYVGAGVLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKIFDQCEGSLLY 174 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+FVKPAN GSSVG+SK + E+ A+ LA+++D + IVEQGI+ REIE AVLGN++ + Sbjct: 175 PMFVKPANMGSSVGISKAENREELQNALALAYQYDSRAIVEQGIEAREIEVAVLGNEDVR 234 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 + GE+V FY YD KYI+ ++ +PA + E+ K + A AY LG +G++R Sbjct: 235 TTLPGEVVKDVAFYDYDAKYINNK-IEMQIPAEVPEEVYQKAQEYAKIAYTMLGGSGLSR 293 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 D FLT +NE+ +NE+NT+PGFT SMYP LW+ GL Y DLI LI+L + R Sbjct: 294 CDFFLTNKNELFLNELNTMPGFTQFSMYPLLWENMGLKYGDLIEELIQLGINRFNQRQ 351 >ref|NP_372607.1| (NC_002758) D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus Mu50] ref|NP_375191.1| (NC_002745) D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus N315] dbj|BAB43170.1| (AP003136) D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus N315] dbj|BAB58245.1| (AP003364) D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus Mu50] Length = 356 Score = 290 bits (743), Expect = 1e-77 Identities = 147/367 (40%), Positives = 220/367 (59%), Gaps = 15/367 (4%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K + IVFGGKSAEHEVS+ +A+N+++AIDK ++ V ++ I G W + + Sbjct: 1 MTKENICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIK 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + D H+ A ++Q+ + D +FP++HG GEDG++QG+ Sbjct: 61 STDELHLEN-GEALEISQLLKESSSG----------QPYDAVFPLLHGPNGEDGTIQGLF 109 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS---FAEVESK 177 V ++P+VG+ VL++A+ MDK V K+L GL P+I+ R+ V K Sbjct: 110 EVLDVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDK 169 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 L P+FVKPAN GSSVG+SK +E + + AF+FD K+++EQG+ REIE AVLGND Sbjct: 170 LNYPVFVKPANLGSSVGISKCNNEAELKEGIKEAFQFDRKLVIEQGVNAREIEVAVLGND 229 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 P+A+ GE+V FY Y +KY D ++ +PA + ++ +R +A++A++ C+G Sbjct: 230 YPEATWPGEVVKDVAFYDYKSKYKDGK-VQLQIPADLDEDVQLTLRNMALEAFKATDCSG 288 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 + R D F+T +N++ INE N +PGFT SMYPKLW+ GL Y +LIT+LIELA ERH Sbjct: 289 LVRADFFVTEDNQIYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELAKERHQDK 348 Query: 358 NALKTTM 364 K + Sbjct: 349 QKNKYKI 355 >ref|NP_388337.1| (NC_000964) D-alanyl-D-alanine ligase A [Bacillus subtilis] sp|P96612|DDL_BACSU D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||D69613 D-alanine--D-alanine ligase (EC 6.3.2.4) A ddlA - Bacillus subtilis dbj|BAA19293.1| (AB001488) PROBABLE D-ALANINE--D-ALANINE LIGASE A [Bacillus subtilis] emb|CAB12263.1| (Z99106) D-alanyl-D-alanine ligase A [Bacillus subtilis] Length = 354 Score = 290 bits (742), Expect = 2e-77 Identities = 152/358 (42%), Positives = 218/358 (60%), Gaps = 8/358 (2%) Query: 9 VFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIA 68 ++GGKSAEH VSLQ+A ++ A++ +FD+ + I ++G+W ++ Sbjct: 1 MYGGKSAEHNVSLQTALAVIKALNTEKFDIHPIYITEKGEWVRGARLTEPVSNVKMLQFE 60 Query: 69 LRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFV 128 SA P ++ + Q +DV+FP++HG GEDG++QGML + N+P+V Sbjct: 61 QGGSAF----SPAALNQEMFPQEASQQNEAIDVVFPLLHGPNGEDGTIQGMLELLNIPYV 116 Query: 129 GSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRH---NISFAEVESKLGLPLFVK 185 G+ VLAS+A MDK V K L GL A + + + S EVE +LG P FVK Sbjct: 117 GNGVLASSAGMDKVVMKHLFAQVGLAQAKYAAFLKKDWTRSPKESCEEVEQELGYPCFVK 176 Query: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTCG 245 PAN GSSVG+SK + E+ A +LAF++D KV+VE+GI GREIE VLGND+P+ S G Sbjct: 177 PANLGSSVGISKCRNREELQKAFELAFQYDRKVVVEEGINGREIEIGVLGNDDPKCSVVG 236 Query: 246 EIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFL 305 EI +DFY Y KY D D + +PA + E I +A++A++ + +G+ R D FL Sbjct: 237 EIAPKTDFYDYKAKYEDGDTDLM-IPAIVTDEEYATISDMAIKAFKAIDGSGLVRADFFL 295 Query: 306 TPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALKTT 363 T + EV+INE+NT+PGFT SM+P LW+ +G+ Y DLI +L+ELA ERHA +K T Sbjct: 296 TADGEVLINEVNTMPGFTPFSMFPLLWKEAGVEYADLIEQLVELAKERHAEKQLIKHT 353 >ref|NP_266497.1| (NC_002662) D-alanine-D-alanine ligase (EC 6.3.2.4) [Lactococcus lactis subsp. lactis] sp|Q9CIL5|DDL_LACLA D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAK04439.1|AE006271_2 (AE006271) D-alanine-D-alanine ligase (EC 6.3.2.4) [Lactococcus lactis subsp. lactis] Length = 349 Score = 281 bits (720), Expect = 6e-75 Identities = 126/359 (35%), Positives = 203/359 (56%), Gaps = 15/359 (4%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K + +++GG+SAE EVS+ SA++++ A++ SRF V I K G++ + Sbjct: 1 MSKETLILLYGGRSAEREVSVLSAESVMRAVNYSRFVVKTYFITKGGEFIKTQEFTDKPA 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 ++ + V+FP++HG +GEDGS+QG L Sbjct: 61 EEEKLLTNDLAESYP-------------KISPAAIYEKAAVVFPVLHGPMGEDGSIQGFL 107 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + L +VG ++L++++ MDK + K + G+ P++ EV KL Sbjct: 108 EILRLAYVGPNILSASSTMDKLLAKHVFEAVGVPQVPYVAAFADENQGEIAQEVVEKLEF 167 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+FVKPAN GSSVG+SKV A+ A+++D++V++EQG+ REIECAVLGN++ Sbjct: 168 PVFVKPANMGSSVGISKVDDLADLQPALSEAYKYDNRVVIEQGVDAREIECAVLGNNSDV 227 Query: 241 -ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 A+ GE+V +FY Y++KYID ++ +PA + ++ K++ A++AY+ + G++ Sbjct: 228 SATLPGEVVKDVEFYDYNSKYIDNK-IQMDIPAKVPADLAQKMQEYAIKAYKAVNGTGLS 286 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 R D F+T + V +NEIN +PGFT SMYP LW+ GL Y+DLI +L++LA E Sbjct: 287 RCDFFVTKDGNVYLNEINAIPGFTQWSMYPLLWENMGLSYSDLIEKLVDLAKETFETRE 345 >emb|CAB64487.1| (AJ243059) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 279 bits (714), Expect = 3e-74 Identities = 130/357 (36%), Positives = 204/357 (56%), Gaps = 14/357 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A++ +RF V I + G + + + + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVNYNRFTVKTFFISQSGDFIKTQEFSQTPGQE 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D V+FP++HG +GEDGS+QG L V Sbjct: 62 DRLMTNATIDWDKQV-------------VPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEV 108 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P+ Sbjct: 109 LKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPV 168 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 F KP+N GSSVG+SK ++E+ A+ LAF++D +V+VEQG+ REIE +LGN + +++ Sbjct: 169 FTKPSNMGSSVGISKSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKST 228 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G++R D Sbjct: 229 LPGEVVKDVAFYDYDAKYIDNK-ITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCD 287 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 F T + E+ +NE+NT+PGFT SMYP LW G+ Y+DLI L++LA + A Sbjct: 288 FFYTDKGEIFLNELNTMPGFTQWSMYPLLWDNMGISYSDLIEHLVDLAKQSFDKREA 344 >sp|O54631|DDL_STRPN D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAC95435.1| (AF068901) D-Ala-D-Ala ligase [Streptococcus pneumoniae] Length = 347 Score = 277 bits (710), Expect = 8e-74 Identities = 132/358 (36%), Positives = 205/358 (56%), Gaps = 16/358 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A++ RF V I + G + + ++ + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSHAPGQE 61 Query: 63 DPAHI-ALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 D +A V+FP++HG +GEDGS+QG L Sbjct: 62 DRLMTNETIDWDKKVAPS--------------AIYEEGAVVFPVLHGPMGEDGSVQGFLE 107 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 V +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P Sbjct: 108 VLKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYP 167 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 +F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +LGN + ++ Sbjct: 168 VFTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKS 227 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 + GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G++R Sbjct: 228 TLPGEVVKDVAFYDYDAKYIDNK-ITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRC 286 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 D F T + E+ +NE+NT+PGFT SMYP LW G+ Y +LI RL++LA E A Sbjct: 287 DFFYTDKGEIFLNELNTMPGFTQWSMYPLLWDNMGISYPELIERLVDLAKESFDKREA 344 >ref|NP_346110.1| (NC_003028) D-alanine--D-alanine ligase [Streptococcus pneumoniae TIGR4] gb|AAK75750.1| (AE007460) D-alanine--D-alanine ligase [Streptococcus pneumoniae TIGR4] Length = 347 Score = 277 bits (710), Expect = 8e-74 Identities = 133/358 (37%), Positives = 205/358 (57%), Gaps = 16/358 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A+D RF V I + G + + ++ + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQE 61 Query: 63 DPAHI-ALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 D +A V+FP++HG +GEDGS+QG L Sbjct: 62 DRLMTNETIDWDKKVAPS--------------AIYEEGAVVFPVLHGPMGEDGSVQGFLE 107 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 V +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P Sbjct: 108 VLKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYP 167 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 +F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +LGN + ++ Sbjct: 168 VFTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKS 227 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 + GE+V FY YD KYID + + +PA I+ ++ +R A A++ +G G++R Sbjct: 228 TLPGEVVKDVAFYDYDAKYIDNN-ITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRC 286 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 D F T + E+ +NE+NT+PGFT SMYP LW G+ Y LI RL++LA E A Sbjct: 287 DFFYTDKGEIFLNELNTMPGFTQWSMYPLLWDNMGISYPKLIERLVDLAKESFDKREA 344 >emb|CAB64475.1| (AJ243056) D-ala,D-ala ligase [Streptococcus pneumoniae] emb|CAB64479.1| (AJ243057) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 277 bits (709), Expect = 1e-73 Identities = 133/358 (37%), Positives = 205/358 (57%), Gaps = 16/358 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A+D RF V I + G + + ++ + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQE 61 Query: 63 DPAHI-ALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 D +A V+FP++HG +GEDGS+QG L Sbjct: 62 DRLMTNETIDWDKKVAPS--------------AIYEEGAVVFPVLHGPMGEDGSVQGFLE 107 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 V +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P Sbjct: 108 VLKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYP 167 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 +F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +LGN + ++ Sbjct: 168 VFTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKS 227 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 + GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G++R Sbjct: 228 TLPGEVVKDVAFYDYDAKYIDNK-ITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRC 286 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 D F T + E+ +NE+NT+PGFT SMYP LW G+ Y +LI RL++LA E A Sbjct: 287 DFFYTDKGEIFLNELNTMPGFTQWSMYPLLWDNMGISYPELIERLVDLAKESFDKREA 344 >emb|CAB64459.1| (AJ243052) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 277 bits (708), Expect = 1e-73 Identities = 132/358 (36%), Positives = 204/358 (56%), Gaps = 16/358 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A++ RF V I + G + ++ + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDSIKTQEFSHAPGQE 61 Query: 63 DPAHI-ALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 D +A V+FP++HG +GEDGS+QG L Sbjct: 62 DRLMTNETIDWDKKVAPS--------------AIYEEGAVVFPVLHGPMGEDGSVQGFLE 107 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 V +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P Sbjct: 108 VLKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYP 167 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 +F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +LGN + ++ Sbjct: 168 VFTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKS 227 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 + GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G++R Sbjct: 228 TLPGEVVKDVAFYDYDAKYIDNK-VTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRC 286 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 D F T + E+ +NE+NT+PGFT SMYP LW G+ Y +LI RL++LA E A Sbjct: 287 DFFYTDKGEIFLNELNTMPGFTQWSMYPLLWDNMGISYPELIERLVDLAKESFDKREA 344 >emb|CAB64463.1| (AJ243053) D-ala,D-ala ligase [Streptococcus pneumoniae] emb|CAB64467.1| (AJ243054) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 277 bits (708), Expect = 1e-73 Identities = 132/358 (36%), Positives = 205/358 (56%), Gaps = 16/358 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A++ RF V I + G + ++ + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDSIKTQEFSHAPGQE 61 Query: 63 DPAHI-ALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 D +A V+FP++HG +GEDGS+QG L Sbjct: 62 DRLMTNETIDWDKKVAPS--------------AIYEEGAVVFPVLHGPMGEDGSVQGFLE 107 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 V +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P Sbjct: 108 VLKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYP 167 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 +F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +LGN + ++ Sbjct: 168 VFTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKS 227 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 + GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G++R Sbjct: 228 TLPGEVVKDVAFYDYDAKYIDNK-VTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRC 286 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 D F T + E+ +NE+NT+PGFT SMYP LW+ G+ Y +LI RL++LA E A Sbjct: 287 DFFYTDKGEIFLNELNTMPGFTQWSMYPLLWENMGISYPELIERLVDLAKESFDKREA 344 >gb|AAF36803.1|AF155139_2 (AF155139) putative D-alanyl-D-alanine ligase VanE [Paenibacillus popilliae] Length = 343 Score = 277 bits (708), Expect = 2e-73 Identities = 125/357 (35%), Positives = 206/357 (57%), Gaps = 20/357 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +L++ I+FGG S EH+VS++SAK I + ID +++ + +GI + G W + + + Sbjct: 1 MNRLKIAILFGGCSEEHDVSVKSAKEIANNIDTEKYEPIYIGITRSGVWKMCEKPCMDWD 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQ-NGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 ++ S P K H L+ + G + +D +F ++HG GEDG++QG+ Sbjct: 61 NEN---------CRSAVLSPDKKMHGLLVMRNKGYQIQRIDAVFSVLHGKSGEDGAIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++++P+VG DV +SA CMDK +T + ++AG F+ L + + + L Sbjct: 112 FELSSIPYVGCDVQSSAVCMDKSLTYIVAQNAGFGTPEFLILNHGDIPDS------NTLT 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GV+KV +E++ A++ A ++D KV++EQ + G E+ CAVLGN + Sbjct: 166 YPVFVKPARSGSSFGVNKVNNEDELDAAIETARQYDSKVLIEQAVPGLEVGCAVLGNGTD 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L+ + + E G++ V+VPA ++ E KI+ A Y+ LGC Sbjct: 226 LIVGEVDQISLSHGIFRIHQEDQPEKGSENAVVLVPANLSAEKRIKIQETAKAIYKALGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 G++RVD+FL +++NE+NTLPGFT S YP++ A+G+ + LI I LAL+ Sbjct: 286 KGLSRVDMFLQENGRIILNEVNTLPGFTAYSRYPRMMAAAGMTLSGLIDHCITLALK 342 >emb|CAB64471.1| (AJ243055) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 277 bits (708), Expect = 2e-73 Identities = 132/357 (36%), Positives = 205/357 (56%), Gaps = 14/357 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A++ RF V I + G + + + + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQE 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D +AT V+FP++HG +GEDGS+QG L V Sbjct: 62 DRLM----TNATIDWDKKVAPS---------AIYEEEAVVFPVLHGPMGEDGSVQGFLEV 108 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+VG ++L+S+ MDK TKR+L G+ P++ + + AEVE KL P+ Sbjct: 109 LKMPYVGCNILSSSLAMDKITTKRVLESTGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPV 168 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 F KP+N GSSVG+SK ++E+ A+ LAF++D +V+VEQG+ REIE +LGN + +++ Sbjct: 169 FTKPSNMGSSVGISKSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKST 228 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G++R D Sbjct: 229 LPGEVVKDVAFYDYDAKYIDNK-ITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCD 287 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 F T + E+ +NE+NT+PGFT SMYP LW G+ Y +LI RL++LA E A Sbjct: 288 FFYTDKGEIFLNELNTMPGFTQWSMYPLLWDNMGISYPELIERLVDLAKESFDKREA 344 >ref|NP_359108.1| (NC_003098) D-alanine-D-alanine ligase [Streptococcus pneumoniae R6] gb|AAL00319.1| (AE008520) D-alanine-D-alanine ligase [Streptococcus pneumoniae R6] Length = 347 Score = 276 bits (707), Expect = 2e-73 Identities = 133/358 (37%), Positives = 206/358 (57%), Gaps = 16/358 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A+D RF V I + G + + ++ + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQE 61 Query: 63 DPAHI-ALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 D +A V+FP++HG +GEDGS+QG L Sbjct: 62 DRLMTNETIDWDKKVAPS--------------AIYEEGAVVFPVLHGPMGEDGSVQGFLE 107 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 V +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P Sbjct: 108 VLKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYP 167 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 +F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +LGN + ++ Sbjct: 168 VFTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKS 227 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 + GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G++R Sbjct: 228 TLPGEVVKDVAFYDYDAKYIDNK-VTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRC 286 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 D F T + E+ +NE+NT+PGFT SMYP LW+ G+ Y +LI RL++LA E A Sbjct: 287 DFFYTDKGEIFLNELNTMPGFTQWSMYPLLWENMGISYPELIERLVDLAKESFDKREA 344 >sp|P25051|VANA_ENTFC VANCOMYCIN/TEICOPLANIN A-TYPE RESISTANCE PROTEIN VANA (VANA LIGASE) (D-ALANINE--D-LACTATE LIGASE) pir||CESOVM vancomycin resistance protein vanA - Enterococcus faecium plasmid pIP816 emb|CAA40215.1| (X56895) VANA ligase [Enterococcus faecium] gb|AAA65956.1| (M97297) vanA [Transposon Tn1546] Length = 343 Score = 275 bits (703), Expect = 6e-73 Identities = 130/357 (36%), Positives = 203/357 (56%), Gaps = 20/357 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I I+K +++ + +GI K G W + + Sbjct: 1 MNRIKVAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGM 119 D+ S P K H L+ +N + + VDV F +HG GEDGS+QG+ Sbjct: 61 NDN---------CYSAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +PFVG D+ +SA CMDK +T + ++AG+ F + + +R V + Sbjct: 112 FELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRP------VAATFT 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GV KV S ++ A++ A ++D K+++EQ + G E+ CAVLGN Sbjct: 166 YPVFVKPARSGSSFGVKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAA 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L + + E G++ + VPA ++ E +I+ A + Y+ LGC Sbjct: 226 LVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETAKKIYKALGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 G+ARVD+FL +V+NE+NTLPGFT+ S YP++ A+G+ +LI RLI LAL+ Sbjct: 286 RGLARVDMFLQDNGRIVLNEVNTLPGFTSYSRYPRMMAAAGIALPELIDRLIVLALK 342 >ref|NP_269512.1| (NC_002737) putative D-ala,D-ala ligase [Streptococcus pyogenes] [Streptococcus pyogenes M1 GAS] gb|AAK34233.1| (AE006579) putative D-ala,D-ala ligase [Streptococcus pyogenes M1 GAS] Length = 348 Score = 275 bits (703), Expect = 6e-73 Identities = 124/358 (34%), Positives = 198/358 (54%), Gaps = 14/358 (3%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K + +++GG+SAE EVS+ SA++++ A++ +F V I + GQ+ + + + Sbjct: 1 MSKQTLVLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQMGQFIKTQQFSEKPS 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + + + V+FP++HG +GEDGS+QG L Sbjct: 61 ESERLM-------------TNETIELTQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFL 107 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 V +P++G++V++S+ MDK TKR+L G+ + E ++L Sbjct: 108 EVLRMPYIGTNVMSSSIAMDKITTKRVLESIGIPQVAYTVYIDGQDLEACLVETLARLTF 167 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+FVKPAN GSSVG+SK ++ + A+ LA +D +V++EQG+ REIE +LGND + Sbjct: 168 PIFVKPANMGSSVGISKAQTKVELRKAIQLALTYDSRVLIEQGVVAREIEVGLLGNDKVK 227 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 ++ GE++ DFY Y KY+D + +PA + I ++R+ A A++ LG G++R Sbjct: 228 STLPGEVIKDVDFYDYQAKYVDNK-ITMAIPADVDQSIVTEMRSYAEVAFKALGGCGLSR 286 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 D FLT + +V +NE+NT+PGFT SMYP LW+ GL Y DLI L+ LA E Sbjct: 287 CDFFLTQDGQVYLNELNTMPGFTQWSMYPLLWENMGLAYPDLIEELVTLAQEMFDQRE 344 >gb|AAF71281.1|AF253562_5 (AF253562) ligase [Enterococcus faecalis] Length = 349 Score = 274 bits (702), Expect = 8e-73 Identities = 133/352 (37%), Positives = 210/352 (58%), Gaps = 3/352 (0%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+ ++ ++FGG S E+EVSLQSA + + I+ ++FD++ +GI + G+W+ + Sbjct: 1 MQNKKIAVIFGGNSTEYEVSLQSASAVFENINTNKFDIIPIGITRSGEWYHYTGEKEKIL 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + + ++Q L A + + VD++FP++HG GE+G+LQG+ Sbjct: 61 NNTWFEDSKNLCPVVVSQNRSVKG-FLEIASDKYRIIKVDLVFPVLHGKNGENGTLQGIF 119 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 +A +P VG D L+SA CMDKD +L+ AG+++ +T R N + E+E+ L Sbjct: 120 ELAGIPVVGCDTLSSALCMDKDRAHKLVSLAGISVPKSVTFKRFNE-EAAMKEIEANLTY 178 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 PLF+KP GSS G++KV +++ A++LAFE D +VIVE+ I G E+ CAVLG D Sbjct: 179 PLFIKPVRAGSSFGITKVIEKQELDAAIELAFEHDTEVIVEETINGFEVGCAVLGIDELI 238 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 EI L+S F+ Y KY +K+ +PA I E +I+ AV Y+ LGC+G +R Sbjct: 239 VGRVDEIELSSGFFDYTEKYTL-KSSKIYMPARIDAEAEKRIQEAAVTIYKALGCSGFSR 297 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 VD+F TP E+V NE+NT+PGFT+ S YP + + GL ++ ++ +LI L +E Sbjct: 298 VDMFYTPSGEIVFNEVNTIPGFTSHSRYPNMMKGIGLSFSQMLDKLIGLYVE 349 >emb|CAB61227.1| (Y15704) vana protein [Bacillus circulans] Length = 343 Score = 274 bits (702), Expect = 8e-73 Identities = 129/357 (36%), Positives = 201/357 (56%), Gaps = 20/357 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I IDK +++ + +GI K G W + + Sbjct: 1 MNRIKVAILFGGCSEEHDVSVKSAIEIAANIDKEKYETLYIGITKSGVWKMCEKPCVEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGM 119 D+ S P K H L+ +N + + VDV F ++HG GEDGS+QG+ Sbjct: 61 NDN---------CCSAVLSPDKKMHGLLVKKNHEYEIDHVDVAFSVLHGKSGEDGSIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +PFVG D+ +SA CMDK +T + +AG+ F + ++ + Sbjct: 112 FELSGIPFVGCDIQSSAICMDKSLTYIVAENAGIATPEFWVFNKDDKP------MADTFT 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+FVKPA GSS GV KV ++ A++LA ++D K+++EQ + G E+ CAVLGN + Sbjct: 166 YPVFVKPARSGSSFGVKKVNGADELDAAIELAGQYDSKILIEQAVLGCEVGCAVLGNSSA 225 Query: 240 QAST-CGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L + + E G++ + VPA ++ E +I+ A + Y LGC Sbjct: 226 FVVGEVDQIRLQHGIFRIHQEAEPEKGSENAVITVPADLSAEERGRIQETAKKIYNALGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 G+ARVD+FL +V+NE+NTLPGFT+ S YP++ A G+ + +LI RLI LAL+ Sbjct: 286 RGLARVDMFLQDNGRIVLNEVNTLPGFTSYSRYPRMMAAVGIAFPELIDRLIVLALK 342 >gb|AAG37026.1|AF277571_3 (AF277571) D-alanine:D-lactate ligase [Enterococcus faecium] Length = 343 Score = 274 bits (701), Expect = 8e-73 Identities = 123/358 (34%), Positives = 203/358 (56%), Gaps = 20/358 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M KL++ ++FGG S EH+VS++SA + I+K ++ +GI K G W + D Sbjct: 1 MYKLKIAVLFGGCSEEHDVSVKSAMEVAANINKEKYQPFYIGITKSGAWKLCDKPCRDWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQN-GQPLPTVDVIFPIVHGTLGEDGSLQGM 119 P + H L+ ++ G VDV+ P++HG GEDG++QG+ Sbjct: 61 NYA---------GYPAVISPDRRIHGLLIQKDGGYESQPVDVVLPMIHGKFGEDGTIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L ++ +P+VG D+ +S CMDK + ++++AG+ + F L + + L Sbjct: 112 LELSGIPYVGCDIQSSVICMDKSLAYMVVKNAGIEVPGFRVLQKGDSLE------AETLS 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+FVKPA GSS GV+KV E+ AV A ++D K++VE+ + G E+ CA+LGN N Sbjct: 166 YPVFVKPARSGSSFGVNKVCRAEELQAAVTEAGKYDSKILVEEAVSGSEVGCAILGNGND 225 Query: 240 QAST-CGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 + +I L F+ + E G++ + VPAA+ E+ ++I+ A + Y+ LGC Sbjct: 226 LITGEVDQIELKHGFFKIHQEAQPEKGSENAVIRVPAALPDEVREQIQETAKKIYRVLGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+AR+D+FL + +V+NE+NT+PGFT+ S YP++ A+G ++++ RLI L+L R Sbjct: 286 RGLARIDLFLREDGSIVLNEVNTMPGFTSYSRYPRMMTAAGFTLSEILDRLIGLSLRR 343 >ref|NP_464381.1| (NC_003210) D-alanine--D-alanine ligase [Listeria monocytogenes EGD-e] emb|CAC98933.1| (AL591977) D-alanine--D-alanine ligase [Listeria monocytogenes] Length = 370 Score = 273 bits (698), Expect = 2e-72 Identities = 152/368 (41%), Positives = 225/368 (60%), Gaps = 7/368 (1%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K ++ +++GGKSAEHEVSLQ+A ++++A+D +F+ + I +G+W + L+ Sbjct: 2 KTKLILLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFV 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + + + K E + I + V+FP++HG GEDG++QG+ V Sbjct: 62 EQLRFSATDTIKLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEV 121 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT---RANRHNISFAEVESKLG 179 N+P+VG+ VLAS+A MDK V K++ DAG+ P + + N AE+E L Sbjct: 122 LNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVAEMEEVLT 181 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+FVKPAN GSSVG+SK T++++ A+ AF +D +V+VEQG+ REIE VLGND P Sbjct: 182 YPVFVKPANLGSSVGISKATNKKELVDAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTP 241 Query: 240 QASTCGEIVLTSD---FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 S GEI+ FY Y KY D + A ++P + PEI ++++ A+QA+ L + Sbjct: 242 VCSVPGEILPEGAVATFYDYKAKYQDNNTAL-IIPTEVDPEILEQMKEYAIQAFLGLDAS 300 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 G+ R D FLT +N++ +NE+NT+PGFT SMYP LWQ +GL Y LI RL++LA ERHAA Sbjct: 301 GLVRADFFLTEDNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLAKERHAA 360 Query: 357 DNALKTTM 364 NALK + Sbjct: 361 KNALKYKL 368 >emb|CAB63849.1| (AJ243051) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 272 bits (697), Expect = 3e-72 Identities = 131/358 (36%), Positives = 205/358 (56%), Gaps = 16/358 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A+D RF V I + G + + ++ + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQE 61 Query: 63 DPAHI-ALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 D +A V+FP++HG +GEDGS+QG L Sbjct: 62 DRLMTNETIDWDKKVAPS--------------AIYEEGAVVFPVLHGPMGEDGSVQGFLE 107 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 V +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P Sbjct: 108 VLKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYP 167 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 +F KP+N G SVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +LGN + ++ Sbjct: 168 VFTKPSNMGCSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKS 227 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 + GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G++R Sbjct: 228 TLPGEVVKDVAFYDYDAKYIDNK-VTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRC 286 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 + F T + E+ +NE+NT+PGFT SMYP LW+ G+ Y +LI RL++LA E A Sbjct: 287 NFFYTDKGEIFLNELNTMPGFTQWSMYPLLWENMGISYPELIERLVDLAKESFDKREA 344 >pdb|1E4E|A Chain A, D-Alanyl-D-Lacate Ligase Length = 343 Score = 272 bits (696), Expect = 3e-72 Identities = 129/357 (36%), Positives = 203/357 (56%), Gaps = 20/357 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I I+K +++ + +GI K G W + + Sbjct: 1 MNRIKVAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGM 119 ++ S P K H L+ +N + + VDV F +HG GEDGS+QG+ Sbjct: 61 NEN---------CYSAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +PFVG D+ +SA CMDK +T + ++AG+ F + + +R V + Sbjct: 112 FELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRP------VAATFT 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GV KV S ++ A++ A ++D K+++EQ + G E+ CAVLGN Sbjct: 166 YPVFVKPARSGSSFGVKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAA 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L + + E G++ + VPA ++ E +I+ + Y+TLGC Sbjct: 226 LVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETVKKIYKTLGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 G+ARVD+FL +V+NE+NTLPGFT+ S YP++ A+G+ +LI RLI LAL+ Sbjct: 286 RGLARVDMFLQDNGRIVLNEVNTLPGFTSYSRYPRMMAAAGISLPELIDRLIVLALK 342 >sp|Q06893|VANB_ENTFC VANCOMYCIN B-TYPE RESISTANCE PROTEIN VANB (VANB LIGASE) (D-ALANINE--D-LACTATE LIGASE) gb|AAC43217.1| (U00456) D-alanine:D-alanine ligase-related protein induced by vancomycin [Enterococcus faecalis] gb|AAB05627.1| (U35369) D-Ala:D-Lac ligase [Enterococcus faecalis] prf||2007289A D-Ala lactate ligase [Enterococcus faecalis] Length = 342 Score = 271 bits (693), Expect = 8e-72 Identities = 127/358 (35%), Positives = 203/358 (56%), Gaps = 21/358 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K++V I+FGG S EH+VS++SA I I+ +FD +GI K G W + Sbjct: 1 MNKIKVAIIFGGCSEEHDVSVKSAIEIAANINTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGM 119 + P + H L+ + + +DV FP++HG GEDG++QG+ Sbjct: 61 ----------ADSLPAIFSPDRKTHGLLVMKEREYETRRIDVAFPVLHGKCGEDGAIQGL 110 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 111 FELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIEKGDKPE------ARTLT 164 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GV+KV S E+ A++ A ++D K+++EQ I G E+ CAV+GN+ + Sbjct: 165 YPVFVKPARSGSSFGVTKVNSTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDD 224 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L+ + + E G++ ++VPA I E ++++ A + Y+ LGC Sbjct: 225 LIVGEVDQIRLSHGIFRIHQENEPEKGSENAMIIVPADIPVEERNRVQETAKKVYRVLGC 284 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+ARVD+FL + +V+NE+NTLPGFT+ S YP++ A+G+ LI LI LA+ER Sbjct: 285 RGLARVDLFLQEDGGIVLNEVNTLPGFTSYSRYPRMAAAAGITLPALIDSLITLAIER 342 >ref|NP_470190.1| (NC_003212) D-alanine--D-alanine ligase [Listeria innocua] emb|CAC96080.1| (AL596166) D-alanine--D-alanine ligase [Listeria innocua] Length = 370 Score = 271 bits (692), Expect = 9e-72 Identities = 152/368 (41%), Positives = 222/368 (60%), Gaps = 7/368 (1%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K ++ +++GGKSAEHEVSLQ+A ++++A+D +F+ + I +G+W + L+ Sbjct: 2 KTKLILLYGGKSAEHEVSLQTAFSVINALDLEKFEAEPIYITNEGEWVQGPLLSGKLDFV 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + + K E + I + V+FP++HG GEDG++QG+ V Sbjct: 62 EQLRFSATDRVKLATAESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEV 121 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT---RANRHNISFAEVESKLG 179 N+P+VG+ VLAS+A MDK V K++ DAG+ P + + N E+E L Sbjct: 122 LNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVTEMEEVLT 181 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+FVKPAN GSSVG+SK T++ + A+ AF +D +V+VEQG+ REIE VLGND P Sbjct: 182 YPVFVKPANLGSSVGISKATNKTELIEAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTP 241 Query: 240 QASTCGEIVLTSD---FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 S GEI+ FY Y KY D + A ++P + PEI ++++ AVQA+ L + Sbjct: 242 VCSVPGEILPEGAVAKFYDYKAKYQDNNTAL-IIPTEVEPEILEQMKEYAVQAFLGLDAS 300 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 G+ R D FLT +N++ +NE+NT+PGFT SMYP LWQ +GL Y LI RL++LA ERHAA Sbjct: 301 GLVRADFFLTEDNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLAKERHAA 360 Query: 357 DNALKTTM 364 NALK + Sbjct: 361 KNALKYKL 368 >emb|CAB64483.1| (AJ243058) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 271 bits (692), Expect = 1e-71 Identities = 131/357 (36%), Positives = 205/357 (56%), Gaps = 14/357 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A++ RF V I + G + + + + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQE 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D +AT V+FP++HG +GEDGS+QG L V Sbjct: 62 DRLM----TNATIDWDKQVAPS---------AIYEEGAVVFPVLHGPMGEDGSVQGFLEV 108 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P+ Sbjct: 109 LKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDLTAKIAEVEEKLTYPV 168 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 F KP+N GSSVG+SK ++E+ A+ LAF++D +V+VEQG+ REIE +LGN + +++ Sbjct: 169 FTKPSNMGSSVGISKSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKST 228 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G++R + Sbjct: 229 LPGEVVKDVAFYDYDAKYIDNK-ITMDIPAKISDDVVPIMRQNAKTAFRAIGGLGLSRCN 287 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 F T + E+ +N++NT+PGFT SMYP LW + Y DLI RL++LA E A Sbjct: 288 FFYTDKGEISLNKLNTMPGFTQWSMYPLLWDNMRISYPDLIERLVDLAKESFDKREA 344 >pdb|1E4E|B Chain B, D-Alanyl-D-Lacate Ligase Length = 343 Score = 271 bits (692), Expect = 1e-71 Identities = 129/357 (36%), Positives = 203/357 (56%), Gaps = 20/357 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I I+K +++ + +GI K G W + + Sbjct: 1 MNRIKVAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGM 119 ++ S P K H L+ +N + + VDV F +HG GEDGS+QG+ Sbjct: 61 NEN---------CYSAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +PFVG D+ +SA CMDK +T + ++AG+ F + + +R V + Sbjct: 112 FELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRP------VAATFT 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GV KV S ++ A++ A ++D K+++EQ + G E+ CAVLGN Sbjct: 166 YPVFVKPARSGSSFGVKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAA 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L + + E G++ + VPA ++ E +I+ + Y+TLGC Sbjct: 226 LVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETVKKIYKTLGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 G+ARVD+FL +V+NE+NTLPGFT+ S YP++ A+G+ +LI RLI LAL+ Sbjct: 286 RGLARVDMFLQDRGRIVLNEVNTLPGFTSYSRYPRMMAAAGISLPELIDRLIVLALK 342 >pir||T35363 D-alanine--D-alanine ligase (EC 6.3.2.4) A SC66T3.06 [similarity] - Streptomyces coelicolor emb|CAB45462.1| (AL079348) putative D-alanine:D-lactate ligase [Streptomyces coelicolor A3(2)] Length = 346 Score = 270 bits (691), Expect = 1e-71 Identities = 135/355 (38%), Positives = 198/355 (55%), Gaps = 20/355 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +L+VGIVFGG S EH VS++SA+ + +D ++ +GI K G W + D Sbjct: 1 MARLKVGIVFGGSSEEHAVSVKSAQEVARNLDTEKYQPFFVGITKDGAWRLCDGPGQDWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLP-TVDVIFPIVHGTLGEDGSLQGM 119 D + P + H L+ + GQ +DV+ P++HGTLGEDG+ QG+ Sbjct: 61 NGDCRPV---------VLSPDRSVHGLLVLEQGQYRSVRLDVVLPVLHGTLGEDGATQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L ++ +P+VG DV +SA CMDK + + R AG+ F T+T + +L Sbjct: 112 LELSGIPYVGCDVQSSALCMDKSLAYVVARSAGIATPDFWTVTGDETIDP------GRLT 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GVSKV E A AV+ A +D KV++E + G E+ CA+LGND + Sbjct: 166 YPVFVKPARSGSSFGVSKVCRPEDLATAVESARRYDTKVLIEAAVVGSEVGCAILGNDPD 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDG---AKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 I L+ F+ + E+G + VVPA I E ++ A Y+ LGC Sbjct: 226 LIVGEVDRIALSHGFFRIHQEEQPENGSENSTPVVPADIPTEKRSLVQETAKAVYRALGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 G++RVD+FL + EVV+NE+NTLPG T+ S YP++ A+GL +++I R + LA Sbjct: 286 RGLSRVDMFLKEDGEVVLNEVNTLPGMTSYSRYPRMMAAAGLPLSEVIDRTLSLA 340 >ref|NP_485023.1| (NC_003272) D-alanyl-D-alanine ligase [Nostoc sp. PCC 7120] dbj|BAB72937.1| (AP003584) D-alanyl-D-alanine ligase [Nostoc sp. PCC 7120] Length = 364 Score = 270 bits (690), Expect = 2e-71 Identities = 158/363 (43%), Positives = 225/363 (61%), Gaps = 13/363 (3%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAI----DKSRFDVVLLGIDKQGQWHVSDASNYLL 59 +RVG++FGG+S EHEVS+ SA+ I A+ + S+++++ I K G+W +A +L Sbjct: 1 MRVGLLFGGRSGEHEVSISSARAIASALSAGENASKYEILPFYIHKDGRWLAGEAPQQVL 60 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 + P + S+ + + + L Q+ + VDV FPI+HG GEDG++QG+ Sbjct: 61 KSGAPL-LESSNSSPAENNLVNSQQQTLERWQSPSQVAEVDVWFPILHGPNGEDGTIQGL 119 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNI------SFAE 173 L + PFVGS VL SA MDK K AGL + +TRA + E Sbjct: 120 LTLMQTPFVGSGVLGSALGMDKIAMKMAFEQAGLPQVKYKAVTRAQIWSNPCVFPKLCDE 179 Query: 174 VESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAV 233 +E+ LG P FVKPAN GSSVG+SKV S ++ A+D A +D ++I+E G+ RE+ECAV Sbjct: 180 IEASLGYPCFVKPANLGSSVGISKVRSRQELEDALDNAANYDRRIIIEAGVAAREVECAV 239 Query: 234 LGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 LGND PQAST GEI SDFY Y+TKY A +++PA I +I+ +I+ +A+QA+ + Sbjct: 240 LGNDQPQASTVGEITFNSDFYDYETKYTAGK-ADLLIPAIIPDDISRQIQNMALQAFAAV 298 Query: 294 GCAGMARVDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 AG+ARVD F EV+INEINTLPGFT SMYP+LW SG+ + +L+ +L++LA+E Sbjct: 299 DAAGLARVDFFYVEATGEVLINEINTLPGFTATSMYPQLWAHSGIPFPELVDKLVQLAIE 358 Query: 353 RHA 355 RH Sbjct: 359 RHN 361 >ref|NP_103309.1| (NC_002678) D-alanine-D-alanine ligase A [Mesorhizobium loti] dbj|BAB49095.1| (AP002998) D-alanine-D-alanine ligase A [Mesorhizobium loti] Length = 357 Score = 269 bits (689), Expect = 2e-71 Identities = 159/360 (44%), Positives = 227/360 (62%), Gaps = 9/360 (2%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 EK RV I++GG+SAEH+VS SA N++ AID++R++VV + I + G+W + + Sbjct: 3 EKTRVAILYGGRSAEHDVSRLSAANVLKAIDRTRYEVVPIAISRDGRWRLQPS---SEAG 59 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 D A + +A +PG + +NG+ VDV+FP++HG GEDGS+QG Sbjct: 60 ADGAGAQVPEDGVEVALLPGGKGRLVALTKNGEQPDPVDVVFPVLHGPFGEDGSVQGYAE 119 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 VA++ +VG +LASAA MDKDV KRLLR+AGL +A +T+ + + SF E+ LGLP Sbjct: 120 VADVAYVGCGILASAAAMDKDVAKRLLREAGLAVARSVTVLKGD--VGSFQEIAGALGLP 177 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL--GNDNP 239 F KPA QGSS GVSKV + + AV+ A +D K ++E+ + GREIEC+VL + + Sbjct: 178 FFAKPARQGSSFGVSKVHDRDGFEQAVETALRYDSKALIEEFVDGREIECSVLERADGSL 237 Query: 240 QASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 S GEI+ FY Y+ KY D +GA V VPA + ++ + +A +A++ LGC Sbjct: 238 TVSPPGEIIPADKHGFYTYEAKYFDAEGAVVKVPADVPADVVARTSEMAARAFRALGCEA 297 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 MARVD FL + +++NE+NTLPGFT+ISMY K A+G+GY+ +I LIE AL RH A Sbjct: 298 MARVDFFLRADGSLLVNEVNTLPGFTDISMYAKALAAAGIGYSKVIDVLIEHALARHRAR 357 >sp|Q47758|DDL_ENTFA D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) Length = 348 Score = 268 bits (685), Expect = 6e-71 Identities = 138/355 (38%), Positives = 213/355 (59%), Gaps = 10/355 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ +++GG+S EH+VS+ SA ++++AI + V L+ I K GQW + + Sbjct: 1 MKIILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKE 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 H+ + + GK + ++FP++HG GEDG++QG + Sbjct: 61 VLHLTWAQTPEETGEFSGKRISPSEIYEEEA------IVFPVLHGPNGEDGTIQGFMETI 114 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN---RHNISFAEVESKLGL 180 N+P+VG+ VLAS MDK +TK LL+ G+ PF+ + R++ F + E L Sbjct: 115 NMPYVGAGVLASVNAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIY 174 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+FVKPAN GSSVG+SKV + E+ A++ AF +D + IVEQGI+ REIE A+LGN++ + Sbjct: 175 PVFVKPANMGSSVGISKVENREELQEALEEAFRYDARAIVEQGIEAREIEVAILGNEDVR 234 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 + GE+V FY YD KYI+ ++ +PA + E+ + + A +AY L +G++R Sbjct: 235 TTLPGEVVKDVAFYDYDAKYINN-TIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSR 293 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 D FLT +NE+ +NE+NT+PGFT+ SMYP LW+ GL Y+DLI LI+LAL R Sbjct: 294 CDFFLTSKNELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLALNRFK 348 >gb|AAF72363.1|AF192329_24 (AF192329) VanB [Enterococcus faecalis] Length = 342 Score = 267 bits (683), Expect = 1e-70 Identities = 125/358 (34%), Positives = 201/358 (55%), Gaps = 21/358 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I I+ +FD +GI K G W + Sbjct: 1 MNRIKVAIIFGGCSEEHDVSVKSAIEIAANINTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGM 119 + P + H L+ + + +DV FP++HG GEDG++QG+ Sbjct: 61 ----------ADSLPAILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGL 110 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 111 FELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPE------AGALT 164 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GV+KV E+ A++ A ++D K+++EQ I G E+ CAV+GN+ + Sbjct: 165 YPVFVKPARSGSSFGVTKVNGTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDD 224 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L+ + + E G++ + VPA I E ++++ A + Y+ LGC Sbjct: 225 LIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGC 284 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+ARVD+FL + +V+NE+NTLPGFT+ S YP++ A+G+ LI LI LAL+R Sbjct: 285 RGLARVDLFLQEDGGIVLNEVNTLPGFTSYSRYPRMVAAAGITLPALIDSLITLALKR 342 >gb|AAD42184.1|AF130997_5 (AF130997) D-alanine:D-lactate ligase [Enterococcus faecium] Length = 343 Score = 267 bits (682), Expect = 2e-70 Identities = 124/358 (34%), Positives = 206/358 (56%), Gaps = 20/358 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V ++FGG S EH VS++SA I ID ++ +GI K G W + + Sbjct: 1 MFRIKVAVLFGGCSEEHNVSIKSAMEIAANIDTKKYQPYYIGITKSGVWKMCEKPCLEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQN-GQPLPTVDVIFPIVHGTLGEDGSLQGM 119 + P + H L+ ++ G + VDV+FP++HG GEDGS+QG+ Sbjct: 61 QYA---------GDPVVFSPDRSTHGLLIQKDKGYEIQPVDVVFPMIHGKFGEDGSIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L ++ +P+VG D+ +S CMDK + ++++AG+ + F L +R Sbjct: 112 LELSGIPYVGCDIQSSVICMDKALAYTVVKNAGITVPGFRILQEGDRLET------EDFV 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN- 238 P+FVKPA GSS GV+KV E+ A++ A ++D K+++E+ + G E+ CA+LGN N Sbjct: 166 YPVFVKPARSGSSFGVNKVCKAEELQAAIEEARKYDSKILIEEAVTGSEVGCAILGNGND 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 A +I L F+ + E G++ + VPAA+ E+ ++I+ A++ Y+ LGC Sbjct: 226 LMAGEVDQIELRHGFFKIHQEAQPEKGSENAVIRVPAALPDEVREQIQETAMKIYRILGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+AR+D+FL + +V+NE+NT+PGFT+ S YP++ A+G ++++ RLIEL+L R Sbjct: 286 RGLARIDLFLREDGCIVLNEVNTMPGFTSYSRYPRMMTAAGFTLSEILDRLIELSLRR 343 >gb|AAC43218.1| (U00457) D-alanine:D-alanine ligase-related protein [Enterococcus faecalis] prf||2007289B D-Ala D-Ala ligase [Enterococcus faecalis] Length = 348 Score = 266 bits (681), Expect = 2e-70 Identities = 139/355 (39%), Positives = 213/355 (59%), Gaps = 10/355 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 L++ +++GG+S EH+VS+ SA ++++AI + V L+ I K GQW + + Sbjct: 1 LKIILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKE 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 H+ + + GK + ++FP++HG GEDG++QG + Sbjct: 61 VLHLTWAQTPEETGEFSGKRISPSEIYEEEA------IVFPVLHGPNGEDGTIQGFMETI 114 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN---RHNISFAEVESKLGL 180 N+P+VG+ VLAS MDK +TK LL+ G+ PF+ + R++ F + E L Sbjct: 115 NMPYVGAGVLASVNAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIY 174 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+FVKPAN GSSVG+SKV + E+ A++ AF +D + IVEQGI+ REIE A+LGN++ + Sbjct: 175 PVFVKPANMGSSVGISKVENREELQEALEEAFRYDARAIVEQGIEAREIEVAILGNEDVR 234 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 + GE+V FY YD KYI+ ++ +PA + E+ + + A +AY L +G++R Sbjct: 235 TTLPGEVVKDVAFYDYDAKYINN-TIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSR 293 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 D FLT +NE+ +NE+NT+PGFT+ SMYP LW+ GL Y+DLI LI+LAL R Sbjct: 294 CDFFLTSKNELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLALNRFK 348 >sp|P29753|VANC_ENTGA VANCOMYCIN C-TYPE RESISTANCE PROTEIN VANC (VANC LIGASE) pir||JN0249 vancomycin resistance protein vanC - Enterococcus gallinarum gb|AAA24786.1| (AF162694) D-alanine-D-alanine ligase-related protein [Enterococcus gallinarum] Length = 343 Score = 266 bits (681), Expect = 2e-70 Identities = 116/349 (33%), Positives = 179/349 (51%), Gaps = 10/349 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 ++ ++FGG S E+ VSL SA +++ AID +++V+ +GI W+ + + D Sbjct: 2 KKIAVLFGGNSPEYSVSLTSAASVIQAIDPLKYEVMTIGIAPTMDWYWYQGNLANVRNDT 61 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 G+ DV+FP++HG GEDG +QG+L + Sbjct: 62 WL----EDHKNCHQLTFSSQG-----FILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELM 112 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 NLP+VG V ASA CM+K + +L G+ AP + L+R + G P+F Sbjct: 113 NLPYVGCHVAASALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIF 172 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 +KP GSS G++KVT + A+ AF + V++++ I G EI C +LGN+ Sbjct: 173 IKPNEAGSSKGITKVTDKTALQSALTTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGA 232 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 C I L F+ ++ KY A + VPA + + +I+ A Y+ LG G+AR+D Sbjct: 233 CDAISLVDGFFDFEEKYQL-ISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDF 291 Query: 304 FLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 F+T + + +NEINT+PGFT S YP + GL Y L+ +LI LA E Sbjct: 292 FVTNQGAIYLNEINTMPGFTGHSRYPAMMAEVGLSYEILVEQLIALAEE 340 >ref|NP_064551.2| (NM_020166) methylcrotonoyl-Coenzyme A carboxylase 1 (alpha); 3-methylcrotonyl-CoA carboxylase biotin-containing subunit [Homo sapiens] dbj|BAB14377.1| (AK023051) unnamed protein product [Homo sapiens] gb|AAG50245.1|AF310339_1 (AF310339) 3-methylcrotonyl-CoA carboxylase alpha subunit [Homo sapiens] gb|AAH04187.1|AAH04187 (BC004187) methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [Homo sapiens] gb|AAH04214.1|AAH04214 (BC004214) methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [Homo sapiens] Length = 725 Score = 266 bits (681), Expect = 2e-70 Identities = 57/344 (16%), Positives = 122/344 (34%), Gaps = 25/344 (7%) Query: 15 AEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSAT 74 + + + +NI + +R ++ + + V + Y + H+ + A Sbjct: 37 RTMKYTTATGRNITKVLIANRGEIACRVMRTAKKLGVQTVAVYSEADRNSMHVDMADEAY 96 Query: 75 SLAQVPGKHEHQ-LIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVL 133 S+ P + + + I P G L E+ + + + F+G Sbjct: 97 SIGPAPSQQSYLSMEKIIQVAKTSAAQAIHPGC-GFLSENMEFAELCKQEGIIFIGPPPS 155 Query: 134 ASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSV 193 A K +K ++ AG+ + ++ + E ++G P+ +K G Sbjct: 156 AIRDMGIKSTSKSIMAAAGVPVVEGY--HGEDQSDQCLKEHARRIGYPVMIKAVRGGGGK 213 Query: 194 GVSKVTSEEQYAIAVDLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGE 246 G+ V SE+++ ++ A D +++E+ + R +E V G+ + A E Sbjct: 214 GMRIVRSEQEFQEQLESARREAKKSFNDDAMLIEKFVDTPRHVEVQVFGDHHGNAVYLFE 273 Query: 247 IVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT 306 K I+E I E+ K+ AV+A + + G V+ + Sbjct: 274 R--DCSVQRRHQKIIEE-----APAPGIKSEVRKKLGEAAVRAAKAVNYVGAGTVEFIMD 326 Query: 307 PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 ++ E+NT + P +G L+ + +A Sbjct: 327 SKHNFCFMEMNTRLQVEH----PVTEMITGTD---LVEWQLRIA 363 >gb|AAK67986.1|AF297332_1 (AF297332) 3-methylcrotonyl-CoA carboxylase biotin-containing subunit [Homo sapiens] Length = 725 Score = 266 bits (681), Expect = 2e-70 Identities = 57/344 (16%), Positives = 122/344 (34%), Gaps = 25/344 (7%) Query: 15 AEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSAT 74 + + + +NI + +R ++ + + V + Y + H+ + A Sbjct: 37 RTMKYTTATGRNITKVLIANRGEIACRVMRTAKKLGVQTVAVYSEADRNSMHVDMADEAY 96 Query: 75 SLAQVPGKHEHQ-LIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVL 133 S+ P + + + I P G L E+ + + + F+G Sbjct: 97 SIGPAPSQQSYLSMEKIIQVAKTSAAQAIHPGC-GFLSENMEFAELCKQEGIIFIGPPPS 155 Query: 134 ASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSV 193 A K +K ++ AG+ + ++ + E ++G P+ +K G Sbjct: 156 AIRDMGIKSTSKSIMAAAGVPVVEGY--HGEDQSDQCLKEHARRIGYPVMIKAVRGGGGK 213 Query: 194 GVSKVTSEEQYAIAVDLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGE 246 G+ V SE+++ ++ A D +++E+ + R +E V G+ + A E Sbjct: 214 GMRIVRSEQEFQEQLESARREAKKSFNDDAMLIEKFVDTPRHVEVQVFGDHHGNAVYLFE 273 Query: 247 IVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT 306 K I+E I E+ K+ AV+A + + G V+ + Sbjct: 274 R--DCSVQRRHQKIIEE-----APAPGIKSEVRKKLGEAAVRAAKAVNYVGAGTVEFIMD 326 Query: 307 PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 ++ E+NT + P +G L+ + +A Sbjct: 327 SKHNFCFMEMNTRLQVEH----PVTEMITGTD---LVEWQLRIA 363 >dbj|BAA99407.1| (AB029826) 3-methylcrotonyl-CoA carboxylase biotin-containing subunit [Homo sapiens] gb|AAG53095.1|AF310972_1 (AF310972) 3-methylcrotonyl-CoA carboxylase alpha subunit [Homo sapiens] Length = 725 Score = 266 bits (681), Expect = 2e-70 Identities = 57/344 (16%), Positives = 122/344 (34%), Gaps = 25/344 (7%) Query: 15 AEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSAT 74 + + + +NI + +R ++ + + V + Y + H+ + A Sbjct: 37 RTMKYTTATGRNITKVLIANRGEIACRVMRTAKKLGVQTVAVYSEADRNSMHVDMADEAY 96 Query: 75 SLAQVPGKHEHQ-LIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVL 133 S+ P + + + I P G L E+ + + + F+G Sbjct: 97 SIGPAPSQQSYLSMEKIIQVAKTSAAQAIHPGC-GFLSENMEFAELCKQEGIIFIGPPPS 155 Query: 134 ASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSV 193 A K +K ++ AG+ + ++ + E ++G P+ +K G Sbjct: 156 AIRDMGIKSTSKSIMAAAGVPVVEGY--HGEDQSDQCLKEHARRIGYPVMIKAVRGGGGK 213 Query: 194 GVSKVTSEEQYAIAVDLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGE 246 G+ V SE+++ ++ A D +++E+ + R +E V G+ + A E Sbjct: 214 GMRIVRSEQEFQEQLESARREAKKSFNDDAMLIEKFVDTPRHVEVQVFGDHHGNAVYLFE 273 Query: 247 IVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT 306 K I+E I E+ K+ AV+A + + G V+ + Sbjct: 274 R--DCSVQRRHQKIIEE-----APAPGIKSEVRKKLGEAAVRAAKAVNYVGAGTVEFIMD 326 Query: 307 PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 ++ E+NT + P +G L+ + +A Sbjct: 327 SKHNFCFMEMNTRLQVEH----PVTEMITGTD---LVEWQLRIA 363 >ref|NP_294085.1| (NC_001263) D-alanine--D-alanine ligase [Deinococcus radiodurans] pir||D75529 D-alanine--D-alanine ligase - Deinococcus radiodurans (strain R1) gb|AAF09941.1|AE001896_6 (AE001896) D-alanine--D-alanine ligase [Deinococcus radiodurans] Length = 339 Score = 266 bits (679), Expect = 3e-70 Identities = 149/355 (41%), Positives = 218/355 (60%), Gaps = 24/355 (6%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K R+ ++ GG+S EHEVSL+SA++++ A+ + +FDV + I KQG+W Sbjct: 2 KRRILLLAGGQSGEHEVSLRSARSVLAALPRDQFDVTPVVISKQGRWL------------ 49 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + + + D +FP++HG +GEDG++QG+L + Sbjct: 50 ------PPTETQKALETGVSSQGGDLMLHRAAAAEGYDAVFPLLHGPMGEDGTIQGLLTL 103 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN--RHNISFAEVESKLGL 180 A +PFVGS VL SA MDK +TK++L AG+ + R + + ++LG Sbjct: 104 AGIPFVGSGVLGSAVSMDKVMTKQVLDSAGIPQVAWRLAVRREWQQTPDAVRARAAELGY 163 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQG--IKGREIECAVLGNDN 238 PLFVKPAN GSSVG+SKV S E+ A+ LAF D +VI+E K RE+E +LGND Sbjct: 164 PLFVKPANLGSSVGISKVGSPEELDAALTLAFGLDRRVILEAMTPHKPREVEVGILGNDV 223 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 P AS GE+ +DFY Y+TKY + A++ +PA I PE++++IR A++A++ L CAG+ Sbjct: 224 PVASPVGELSFDADFYDYETKYTEGR-AEMHIPARIPPEVSERIRTEALRAFRALDCAGL 282 Query: 299 ARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 ARVD F E E+ +NE+NT+PGFT SMYPKL++A+GL Y++L+TRL+ELALE Sbjct: 283 ARVDFFYVEETGELFLNEVNTMPGFTTTSMYPKLFEAAGLSYSELVTRLVELALE 337 >gb|AAC23582.1| (U82965) D-alanine:D-alanine ligase-related protein [Streptomyces toyocaensis] Length = 340 Score = 266 bits (679), Expect = 4e-70 Identities = 122/348 (35%), Positives = 199/348 (57%), Gaps = 18/348 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +L++GIVFGG+S EH VS++SA+ + +D +++ +GI K G W + D + Sbjct: 1 MARLKIGIVFGGRSEEHPVSIKSAREVARNLDLEKYEPFYIGITKSGAWKLCDGPDAEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 D + L P + + + G +DV+ P++HG LGEDG++QG+L Sbjct: 61 DGDCRPVVLSPDSDVHGLLVLEQ--------GGCSTIRLDVVLPVLHGKLGEDGAMQGLL 112 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 ++ +P+VG D+ +SA CMDK + ++R+AG+ F T+ + ++ Sbjct: 113 ELSGIPYVGCDIQSSAVCMDKSLAYAVVRNAGIATPNFWTVAADETVD------AARFTY 166 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-NP 239 P+FVKPA GSS GV+KV+ EE+ + AV+ A ++D KV++E+ + G EI CA+LG + Sbjct: 167 PVFVKPARSGSSFGVTKVSREEEMSSAVETARQYDSKVLIEEAVPGSEIGCAILGTGTDL 226 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 I L+ F+ + E G++ +VPA I +++ A Y+ LGC Sbjct: 227 VVGEVDRIALSHGFFRIHQEDSPETGSENSIAIVPADIPEASRLRVQEEAKAVYRVLGCR 286 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLIT 344 G+ARVD+FL + EVV+NE+NTLPG T+ S YP++ A+GL +++I Sbjct: 287 GIARVDMFLKEDGEVVLNEVNTLPGLTSYSRYPRMMAAAGLPMSEVID 334 >emb|CAB05883.1| (Z83305) D-alanine:D-alanine ligase-related protein [Enterococcus faecium] gb|AAB39760.1| (U81452) D-alanine:D-alanine ligase-related protein [Enterococcus faecium] gb|AAG34691.1|AF310956_6 (AF310956) D-alanine:D-lactate ligase [Enterococcus faecium] Length = 342 Score = 264 bits (676), Expect = 8e-70 Identities = 125/358 (34%), Positives = 201/358 (55%), Gaps = 21/358 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I ID +FD +GI K G W + Sbjct: 1 MNRIKVAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGM 119 + P + H L+ + + +DV FP++HG GEDG++QG+ Sbjct: 61 ----------ADSLPAILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGL 110 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 111 FVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPE------AGALT 164 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS G++KV E+ A++ A ++D K+++EQ I G E+ CAV+GN+ + Sbjct: 165 YPVFVKPARSGSSFGLTKVNGTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDD 224 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L+ + + E G++ + VPA I E ++++ A + Y+ LGC Sbjct: 225 LIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGC 284 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+ARVD+FL + +V+NE+NTLPGFT+ S YP++ A+G+ LI LI LAL+R Sbjct: 285 RGLARVDLFLQEDGGIVLNEVNTLPGFTSYSRYPRMMAAAGITLPALIDSLITLALKR 342 >gb|AAG34685.1|AF310955_1 (AF310955) ligase VanB2 [Enterococcus faecalis] gb|AAG34693.1|AF310957_1 (AF310957) ligase VanB2 [Enterococcus faecium] Length = 342 Score = 264 bits (675), Expect = 9e-70 Identities = 124/358 (34%), Positives = 200/358 (55%), Gaps = 21/358 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V +FGG S EH+VS++SA I ID +FD +GI K G W + Sbjct: 1 MNRIKVATIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGM 119 + P + H L+ + + +DV FP++HG GEDG++QG+ Sbjct: 61 ----------ADSLPAILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGL 110 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 111 FVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPE------AGALT 164 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GV+KV E+ A++ A ++D K+++EQ I G E+ CAV+GN+ + Sbjct: 165 YPVFVKPARSGSSFGVTKVNGPEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDD 224 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L+ + + E G++ + VPA I E ++++ A + Y+ LGC Sbjct: 225 LIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGC 284 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+ARVD+FL + +V+NE+NT+PGFT+ S YP++ A+G+ LI LI LAL+R Sbjct: 285 RGLARVDLFLQEDGGIVLNEVNTMPGFTSYSRYPRMVAAAGITLPALIDSLITLALKR 342 >gb|AAD41882.1|AF153050_3 (AF153050) D-alanine:D-lactate ligase [Enterococcus faecium] Length = 343 Score = 263 bits (672), Expect = 2e-69 Identities = 126/358 (35%), Positives = 206/358 (57%), Gaps = 20/358 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K++V ++FGG S EH VS++SA I ID ++ +GI K G W + + Sbjct: 1 MFKIKVAVLFGGCSEEHNVSIKSAMEIAANIDTKKYQPYYIGITKSGVWKMCEKPCLGWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQN-GQPLPTVDVIFPIVHGTLGEDGSLQGM 119 + P + H L+ ++ G + VDV+FP++HG GEDGS+QG+ Sbjct: 61 QYA---------GDPVVFSPDRSTHGLLIQKDTGYEIQPVDVVFPMIHGKFGEDGSIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L ++ +P+VG D+ +S CMDK + ++++AG+ + F L +R L Sbjct: 112 LELSGIPYVGCDIQSSVICMDKALAYTVVKNAGIAVPGFRILQEGDRLET------EDLV 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN- 238 P+FVKPA GSS GV+KV E+ A+ A ++D K+++E+ + G E+ CA+LGN+N Sbjct: 166 YPVFVKPARSGSSFGVNKVCKAEELQAAIREARKYDSKILIEEAVTGSEVGCAILGNEND 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 A +I L F+ + E G++ + VPAA+ E+ ++IR A++ Y+ LGC Sbjct: 226 LMAGEVDQIELRHGFFKIHQEAQPEKGSENAVIRVPAALPDEVRERIRKTAMKIYRILGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+AR+D+FL + +V+NE+NT+PGFT+ S YP++ A+G ++++ RLIE +L R Sbjct: 286 RGLARIDLFLREDGCIVLNEVNTMPGFTSYSRYPRMMTAAGFTLSEILDRLIEFSLRR 343 >gb|AAG34683.1|AF310953_1 (AF310953) ligase VanB2 [Enterococcus faecium] Length = 342 Score = 261 bits (668), Expect = 7e-69 Identities = 123/358 (34%), Positives = 200/358 (55%), Gaps = 21/358 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V +FGG S EH+VS++SA I ID +FD +GI K G W + Sbjct: 1 MNRIKVATIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGM 119 + P + H L+ + + +DV FP++HG GEDG++QG+ Sbjct: 61 ----------ADSLPAILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGL 110 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 111 FVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPE------AGALT 164 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS G++KV E+ A++ A ++D K+++EQ I G E+ CAV+GN+ + Sbjct: 165 YPVFVKPARSGSSFGLTKVNGTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDD 224 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L+ + + E G++ + VPA I E ++++ A + Y+ LGC Sbjct: 225 LIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGC 284 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+ARVD+FL + +V+NE+NTLPGFT+ S YP++ A+G+ +I LI LAL+R Sbjct: 285 RGLARVDLFLQEDGGIVLNEVNTLPGFTSYSRYPRMMAAAGITLPAMIDSLITLALKR 342 >gb|AAG34684.1|AF310954_1 (AF310954) ligase VanB2 [Enterococcus faecium] Length = 342 Score = 261 bits (667), Expect = 7e-69 Identities = 124/358 (34%), Positives = 200/358 (55%), Gaps = 21/358 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V +FGG S EH+VS++SA I ID +FD +GI K G W + Sbjct: 1 MNRIKVATIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGM 119 + P + H L+ + + +DV FP++HG GEDG++QG+ Sbjct: 61 ----------ADSLPAILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGL 110 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 111 FVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPE------AGALT 164 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS G++KV E+ A++ A ++D K+++EQ I G E+ CAV+GN+ + Sbjct: 165 YPVFVKPARAGSSFGLTKVNGTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDD 224 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L+ + + E G++ + VPA I E ++++ A + Y+ LGC Sbjct: 225 LIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGC 284 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+ARVD+FL + +V+NE+NTLPGFT+ S YP++ A+G+ LI LI LAL+R Sbjct: 285 RGLARVDLFLQEDGGIVLNEVNTLPGFTSYSRYPRMMAAAGITLPALIDSLITLALKR 342 >ref|NP_349497.1| (NC_003030) D-alanine-D-alanine ligase [Clostridium acetobutylicum] gb|AAK80837.1|AE007787_3 (AE007787) D-alanine-D-alanine ligase [Clostridium acetobutylicum] Length = 343 Score = 260 bits (664), Expect = 2e-68 Identities = 139/358 (38%), Positives = 217/358 (59%), Gaps = 20/358 (5%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K +V I+FGG+S EHEVS SA +++ ID S++D+ +GI K+G+W S + Sbjct: 2 KKKVAILFGGQSTEHEVSRVSAASVLRNIDTSKYDLFPIGITKKGEWFEYTGSADKIENG 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + S A + K VDV+FP++HG GEDG++QG+ ++ Sbjct: 62 EWEKDEFYKSPNGQAILFNK---------------EVDVVFPVMHGLYGEDGTIQGLCKL 106 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR---HNISFAEVESKLG 179 +P VG VL+S+ CMDK TK +L + A ++ + E+E+KLG Sbjct: 107 VGVPCVGPSVLSSSVCMDKVYTKYVLEHFNIKQADYVVVHAHEYKTSKEEIIKEIENKLG 166 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 +F+KP+N GSSVG++K + ++ ++ A ++D K++VE+ + REIE AVLGN+ P Sbjct: 167 YAVFIKPSNSGSSVGITKAHNRKELEAGLEEAMKYDRKILVEEALNAREIEVAVLGNEEP 226 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 +A+ GEIV +FY Y+ KY + +K+++PA ++ E +KI+ IA++ Y+ L C+GM+ Sbjct: 227 KAAIPGEIVPAKEFYDYEAKY-ENAASKLLIPANLSNENLEKIKNIAIEVYKALDCSGMS 285 Query: 300 RVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 RVD + + E+ +NE+NT+PGFT+ISMYPKLW A+G Y+ LI LIELA R+ A Sbjct: 286 RVDFLVDKDTTEMYLNEVNTIPGFTSISMYPKLWAAAGKDYSKLIDELIELAASRNNA 343 >gb|AAD51060.1|AF175293_5 (AF175293) D-alanine:D-lactate ligase [Enterococcus faecium] Length = 343 Score = 259 bits (661), Expect = 4e-68 Identities = 124/358 (34%), Positives = 204/358 (56%), Gaps = 20/358 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V ++FGG S EH VS++SA I ID ++ +GI K G W + + Sbjct: 1 MFRIKVAVLFGGCSEEHNVSIKSAMEIAANIDTKKYQPYYIGITKSGVWKMCEKPCLEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQN-GQPLPTVDVIFPIVHGTLGEDGSLQGM 119 + P + H L+ ++ G + VDV P++HG GEDGS+QG+ Sbjct: 61 QYA---------GDPVVFSPDRSTHGLLIQKDTGYEIQPVDVGLPMIHGKFGEDGSIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L ++ +P+VG D+ +S CMDK + ++++AG+ + F L +R Sbjct: 112 LELSGIPYVGCDIQSSVTCMDKALAYTVVKNAGIAVPGFRILQEGDRLET------EDFV 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN- 238 P+FVKPA GSS GV+KV E+ A++ A ++D K+++E+ + G E+ CA+LGN N Sbjct: 166 YPVFVKPARSGSSFGVNKVCKAEELQAAIEDARKYDSKILIEEAVTGSEVGCAILGNGND 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 A +I L F+ + E G++ + VPAA+ E+ ++I+ A++ Y+ LGC Sbjct: 226 LMAGEVDQIELRHGFFKIHQEAQPEKGSENAVIRVPAALPDEVIERIQKTAMKIYRILGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+AR+D+FL + +V+NE+NT+PGFT+ S YP++ A+G T+++ RLIEL+L R Sbjct: 286 RGLARIDLFLREDGCIVLNEVNTMPGFTSYSRYPRMMTAAGFTLTEILDRLIELSLRR 343 >ref|NP_484982.1| (NC_003272) biotin carboxylase [Nostoc sp. PCC 7120] sp|Q06862|ACCC_ANASP BIOTIN CARBOXYLASE (A SUBUNIT OF ACETYL-COA CARBOXYLASE (ACC) pir||A53311 biotin carboxylase (EC 6.3.4.14) - Anabaena sp. (strain PCC 7120) gb|AAB51770.1| (L14862) biotin carboxylase [Anabaena sp.] dbj|BAB72896.1| (AP003584) biotin carboxylase [Nostoc sp. PCC 7120] Length = 447 Score = 258 bits (660), Expect = 5e-68 Identities = 57/342 (16%), Positives = 117/342 (33%), Gaps = 26/342 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ L + + ++ + + + H+ L A + + + I Sbjct: 5 KILIANRGEIALRILRACEEMGIATIAVHSTVDRNALHVQLADEAVCIGEPASAKSYLNI 64 Query: 89 D-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 I P +G L E+ + ++ F+G A DK K Sbjct: 65 PNIIAAALTRNASAIHPG-YGFLSENAKFAEICADHHIAFIGPTPEAIRLMGDKSTAKET 123 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 ++ AG+ P E+ +G P+ +K G G+ V S +++ Sbjct: 124 MQKAGVPTVPGSEGLVETEQEG--LELAKDIGYPVMIKATAGGGGRGMRLVRSPDEFVKL 181 Query: 208 V------DLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A + V +E+ I+ R IE +L ++ GE + K Sbjct: 182 FLAAQGEAGAAFGNAGVYIEKFIERPRHIEFQILADNYGNVIHLGER--DCSIQRRNQKL 239 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E A+ ++ +K+ AV+A Q + G ++ L + E+NT Sbjct: 240 LEE-----APSPALDSDLREKMGQAAVKAAQFINYTGAGTIEFLLDRSGQFYFMEMNTRI 294 Query: 321 GFTNISMYPKLWQASGLGYTDLITRL-IELALE-RHAADNAL 360 + P +G+ L+ ++ I R D + Sbjct: 295 QVEH----PVTEMVTGVDL--LVEQIRIAQGERLRLTQDQVV 330 >ref|NP_442228.1| (NC_000911) biotin carboxylase [Synechocystis sp. PCC 6803] pir||S74380 biotin carboxylase accC - Synechocystis sp. (strain PCC 6803) dbj|BAA10298.1| (D64001) biotin carboxylase [Synechocystis sp. PCC 6803] Length = 448 Score = 258 bits (660), Expect = 6e-68 Identities = 57/346 (16%), Positives = 116/346 (33%), Gaps = 28/346 (8%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHE 84 + +R ++ L I + + + + H+ L + + P Sbjct: 1 MQFAKILIANRGEIALRIIHSCEELGIPTVAVHSTIDRHALHVQLANESVCIGPPPSNKS 60 Query: 85 HQLID-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + I I P +G L E+ + + F+G A A DK Sbjct: 61 YLNIPNIIAAALTRNATAIHPG-YGFLAENARFAEICADHQITFIGPSPEAITAMGDKST 119 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 K+ ++ +G+ P + + ++ +++G P+ +K G G+ V E+ Sbjct: 120 AKKTMQKSGVPCVPGSPGLIESEA--TALKIAAEIGYPVIIKATAGGGGRGMRLVQEEKD 177 Query: 204 YAIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 + A + V +E+ I+ R IE +L + + GE Sbjct: 178 FLKLFHAAQGEAGAAFGNPGVYLEKFIEKPRHIEFQILADSHGNVVHLGER--DCSIQRR 235 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEI 316 K ++E + P + K+ AV+A +++ G V+ + E+ Sbjct: 236 HQKLLEE-----APSPFLTPHLRKKMGEAAVKAAKSINYVGAGTVEFLVDGNGNFYFMEM 290 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE---RHAADNA 359 NT + P +G LI+ I +A+ R + Sbjct: 291 NTRIQVEH----PVTEMITGYD---LISEQIRIAMGEKLRFRQSDV 329 >sp|Q47823|DDL_ENTGA D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAB17903.1| (U39789) D-alanine:D-alanine ligase [Enterococcus gallinarum] Length = 316 Score = 258 bits (660), Expect = 6e-68 Identities = 116/322 (36%), Positives = 187/322 (58%), Gaps = 17/322 (5%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ +++GG+SAEH+VSL SA ++V+A+ + + V L+ I + GQW + + Sbjct: 1 MKIILLYGGRSAEHDVSLLSAFSVVNAVYYNYYQVQLVMITRDGQWLKGSLLTEAPTSKE 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 ++ +Q Q G+ ++FP++HG GEDG++QG L Sbjct: 61 VLNL-------------TDSAYQGTPIQPGEIKEEDAIVFPLLHGPNGEDGTIQGFLETI 107 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRHNISFAEVESKLGL 180 +P+VG+ VL SA MDK +TK +L+ AG+ P++ + + F + E L Sbjct: 108 GMPYVGAGVLTSACGMDKIMTKYILQAAGIPQVPYVPVLKNYWKENPKKVFEQCEGSLLY 167 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+F+KPAN GSSVG++K + E+ A+ A+ +D + IVEQGI+ REIE AVLGN++ + Sbjct: 168 PMFIKPANMGSSVGITKAENREELQNALQEAYRYDTRAIVEQGIEAREIEVAVLGNEDVR 227 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 + GEIV FY Y++KY+D ++ +PA I E K + A +AY LG +G++R Sbjct: 228 TTMPGEIVKDVAFYDYNSKYLDNK-IEMQIPAQIPEETQAKAQEFAKKAYTMLGGSGLSR 286 Query: 301 VDVFLTPENEVVINEINTLPGF 322 D FLT +NE+ +NE+NT+P Sbjct: 287 CDFFLTNKNELFLNELNTIPAL 308 >sp|Q9ZGN0|DDL_MYCSM D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAC99396.1| (AF077728) D-alanine:D-alanine ligase [Mycobacterium smegmatis] Length = 373 Score = 257 bits (657), Expect = 1e-67 Identities = 156/363 (42%), Positives = 221/363 (59%), Gaps = 16/363 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 + RV +V+GG+S+EH +S SA +I+ +D RF+VV +GI G W ++D L Sbjct: 10 RTRVAVVYGGRSSEHAISCVSAGSILRNLDPERFEVVAIGITPDGSWVLTDGRPETLAIT 69 Query: 63 D---PAHIALRPSATSLAQVPGKHEHQL-IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118 D PA + +L P + L + G+ L VDV+FP++HG GEDG++QG Sbjct: 70 DGKLPAVTEASGTELALPAAPNRSGQLLALGNGPGEILAAVDVVFPVLHGPYGEDGTIQG 129 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 +L +A +P+VGS VLASAA MDK+ TK+LL GL I + L E +L Sbjct: 130 LLELAGVPYVGSGVLASAAGMDKEYTKKLLAAEGLPIGDQVVLRPGVETLD--LEQRERL 187 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG--N 236 GLP+FVKPA GSS+GVS+VT+ ++ AV LA D KVIVE + GRE+EC VL + Sbjct: 188 GLPVFVKPARGGSSIGVSRVTAWDELPAAVALARRHDPKVIVEAAVIGRELECGVLEFPD 247 Query: 237 DNPQASTCGE------IVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 +AST GE FY + TKY++ D A++ VPA + ++ D+IR +AV+A+ Sbjct: 248 GRLEASTVGEIRVAGVRGREDGFYDFATKYLE-DAAELDVPAKVDDDVADEIRQLAVRAF 306 Query: 291 QTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 +GC G+ARVD FLT + VINEINT+PGFT ISMYP++W A G+ Y L+ +++ A Sbjct: 307 TAIGCQGLARVDFFLTDDG-PVINEINTMPGFTTISMYPRMWAAGGIDYPTLLAAMVDTA 365 Query: 351 LER 353 + R Sbjct: 366 IAR 368 >ref|NP_220281.1| (NC_000117) UDP-N-acetylmuramate-alanine ligase and D-Ala-D-Ala Ligase [Chlamydia trachomatis] sp|O84767|MUDD_CHLTR MURC/DDL BIFUNCTIONAL ENZYME [INCLUDES: UDP-N-ACETYLMURAMATE--ALANINE LIGASE (UDP-N-ACETYLMURAMOYL-L-ALANINE SYNTHETASE); D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE)] pir||A71475 probable muramate-Ala ligase and D-Ala-D-Ala ligase - Chlamydia trachomatis (serotype D, strain UW3/Cx) gb|AAC68357.1| (AE001348) UDP-N-acetylmuramate-alanine ligase and D-Ala-D-Ala Ligase [Chlamydia trachomatis] Length = 803 Score = 256 bits (655), Expect = 2e-67 Identities = 112/369 (30%), Positives = 178/369 (47%), Gaps = 30/369 (8%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 KL +GI+ GGKS EHE+S+ SAKNI + KS +DV I ++G W Sbjct: 447 KLHLGIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITREGLW------------- 493 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + S + + D + Q L VDV+ PI+HG GEDG++QG L Sbjct: 494 ---------ESVSSLETAEDSGKSVFDPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLET 544 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT---RANRHNISFAEVESKLG 179 P+ G + SA M+K TKR + D G+ + P++ LT + A + Sbjct: 545 IGKPYTGPAIAFSAIAMNKVFTKRFMSDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAFS 604 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGNDN 238 P+FVK ++ GSS+GV +V + + A++ AF D+ V VE+ G +EIE +VLG+ + Sbjct: 605 FPIFVKSSHLGSSIGVFEVHNVIELRDAINEAFMRDNDVFVEENRLGCKEIEVSVLGDGS 664 Query: 239 P--QASTCGEIVLTSDFYAYDTKY--IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 + E + F Y KY + A++V ++ EI ++I A + Y+ L Sbjct: 665 GAFVVAGLHERRGSGGFIDYQEKYGLSGKSSAQIVFDTDLSKEIQEQILEAADKIYRLLL 724 Query: 295 CAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 G R+D F+ E ++E+N +PG T S + + G Y ++ +L+ L+R Sbjct: 725 GKGSCRIDFFVDEEGNFWLSEMNPIPGMTETSPFLTSFIRKGWSYEQIVHQLVIDGLQRF 784 Query: 355 AADNALKTT 363 L +T Sbjct: 785 NQRQRLIST 793 >ref|NP_389369.1| (NC_000964) pyruvate carboxylase [Bacillus subtilis] pir||F69685 pyruvate carboxylase (EC 6.4.1.1) pycA [similarity] - Bacillus subtilis emb|CAB13359.1| (Z99111) pyruvate carboxylase [Bacillus subtilis] Length = 1148 Score = 256 bits (653), Expect = 3e-67 Identities = 57/344 (16%), Positives = 110/344 (31%), Gaps = 25/344 (7%) Query: 23 SAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ--VP 80 S ++I + +R ++ + + ++ + Y H A + + P Sbjct: 2 SQQSIQKVLVANRGEIAIRIFRACTELNIRTVAVYSKEDSGSYHRYKADEAYLVGEGKKP 61 Query: 81 GKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMD 140 + + VD I P +G L E+ + F+G D Sbjct: 62 IDAYLDIEGIIDIAKRNKVDAIHPG-YGFLSENIHFARRCEEEGIVFIGPKSEHLDMFGD 120 Query: 141 KDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTS 200 K + AG+ + P + + G P+ +K + G G+ V S Sbjct: 121 KVKAREQAEKAGIPVIPGSDG--PAETLEAVEQFGQANGYPIIIKASLGGGGRGMRIVRS 178 Query: 201 EEQYAIAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDF 253 E + A + A + +V VE+ I+ + IE V+G+ E Sbjct: 179 ESEVKEAYERAKSEAKAAFGNDEVYVEKLIENPKHIEVQVIGDKQGNVVHLFER--DCSV 236 Query: 254 YAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVI 313 K I+ V +++PE+ D+I AV + + V+ + NE Sbjct: 237 QRRHQKVIE-----VAPSVSLSPELRDQICEAAVALAKNVNYINAGTVEFLV-ANNEFYF 290 Query: 314 NEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 E+N + +G+ L+ H+ Sbjct: 291 IEVNPRVQVEHT----ITEMITGVDIVQTQI-LVAQGHSLHSKK 329 >gb|AAB88214.1| (U59234) biotin carboxylase [Synechococcus sp. PCC 7942] Length = 453 Score = 255 bits (651), Expect = 6e-67 Identities = 57/331 (17%), Positives = 110/331 (33%), Gaps = 25/331 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ L + + + + + + H+ L A + + + I Sbjct: 5 KILIANRGEIALRILRTCEELGIGTIAVHSTVDRNALHVQLADEAVCIGEAASSKSYLNI 64 Query: 89 D-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 I P +G L E+ + +L F+G + A DK K Sbjct: 65 PNIIAAALTRNASAIHPG-YGFLAENARFAEICADHHLTFIGPSPDSIRAMGDKSTAKET 123 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 ++ G+ P + S A+V +++G P+ +K G G+ V Sbjct: 124 MQRVGVPTIPGSDGLLTD--VDSAAKVAAEIGYPVMIKATAGGGGRGMRLVREPADLEKL 181 Query: 208 V------DLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A + + +E+ I R +E +L + GE K Sbjct: 182 FLAAQGEAEAAFGNPGLYLEKFIDRPRHVEFQILADAYGNVVHLGER--DCSIQRRHQKL 239 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E A++ ++ K+ AV+ Q +G G V+ + E+NT Sbjct: 240 LEE-----APSPALSADLRQKMGDAAVKVAQAIGYIGAGTVEFLVDATGNFYFMEMNTRI 294 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELAL 351 + P +GL LI I +A Sbjct: 295 QVEH----PVTEMITGLD---LIAEQIRIAQ 318 >ref|NP_539980.1| (NC_003317) BIOTIN CARBOXYLASE [Brucella melitensis] gb|AAL52244.1| (AE009546) BIOTIN CARBOXYLASE [Brucella melitensis] Length = 459 Score = 255 bits (651), Expect = 6e-67 Identities = 64/333 (19%), Positives = 117/333 (34%), Gaps = 26/333 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 + +R ++ L + + + + + D H+ L + + P + + Sbjct: 8 MFQKILIANRGEIALRVLRACKELGIKTVAVHSTADADAMHVRLADESVCIGPPPSRDSY 67 Query: 86 QLID-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 I + D I P +G L E+ +L ++ F+G DK Sbjct: 68 LNIHQIVAACEITGADAIHPG-YGFLSENAKFAEILEAHDITFIGPTASHIRIMGDKIEA 126 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 KR + G+ + P + A + ++G P+ +K + G G+ S E+ Sbjct: 127 KRTAKRLGIPVVPGSDGGVTDEVE--AARIAKEIGYPVIIKASAGGGGRGMKVARSAEEL 184 Query: 205 AIAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 IA+ A D V +E+ ++ R IE V+G+ A GE Sbjct: 185 PIALATARSEAGAAFGDDAVYIEKYLEKPRHIEVQVMGDGAGNAVHLGER--DCSLQRRH 242 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K +E + A+ E +KI I A LG G ++ + E E+N Sbjct: 243 QKVWEEGNS-----PALNAEAREKIGMICANACAELGYRGAGTIEFLY-EDGEFYFIEMN 296 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 T + P +G+ L+ I +A Sbjct: 297 TRLQVEH----PVTEAITGID---LVHEQIRVA 322 >ref|NP_302152.1| (NC_002677) D-alanine-D-alanine ligase A [Mycobacterium leprae] emb|CAC30631.1| (AL583923) D-alanine-D-alanine ligase A [Mycobacterium leprae] Length = 384 Score = 254 bits (648), Expect = 1e-66 Identities = 148/367 (40%), Positives = 215/367 (58%), Gaps = 20/367 (5%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 ++RV +VFGG+S EH VS SA +I+ +D+ RFDVV +GI +G W ++D + L Sbjct: 17 RVRVAVVFGGRSNEHAVSCLSAGSILRNLDRQRFDVVAVGITPEGTWMLTDPNPDALAIA 76 Query: 63 DPAHIALRPSATSLAQVPGK--------HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDG 114 + A+ + +P G+ L +VDV+FP++HG GEDG Sbjct: 77 NRQLPAVSCESGIELTLPADPRRSGQLVSLSHGAGLGAGEVLTSVDVVFPVLHGPYGEDG 136 Query: 115 SLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 ++QG+L +A +P+VG+ VLASAA MDK+ TK+L GL ++ + L + Sbjct: 137 TIQGLLELARVPYVGAGVLASAAGMDKEFTKKLFAAEGLPLSAYTVLRPLRPTLH--RQE 194 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL 234 +L LP+FVKPA GSS+G+S+V+S Q A+ A D KVIVE + GRE+EC VL Sbjct: 195 CERLSLPVFVKPARGGSSIGISRVSSWGQLPSAIAYARRHDPKVIVEAAVNGRELECGVL 254 Query: 235 G--NDNPQASTCGEIV------LTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIA 286 + AS GEI FY + TKY+D D A++ VPA + ++ D++R +A Sbjct: 255 EMPDGTVAASAVGEIRVAGVSGSEDSFYDFTTKYLD-DAAELDVPAKVDDDVADEVRQLA 313 Query: 287 VQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 +QA++ + C G+ARVD FLT + VINEINT+PGFT SMYPKLW S + Y L+ + Sbjct: 314 IQAFRAIDCQGLARVDFFLTDDG-PVINEINTMPGFTMTSMYPKLWAVSSVDYPTLLATM 372 Query: 347 IELALER 353 ++ AL R Sbjct: 373 VDTALAR 379 >gb|AAD19835.1| (AF060799) D-alanyl-D-alanine ligase [Amycolatopsis orientalis] Length = 348 Score = 253 bits (647), Expect = 2e-66 Identities = 121/353 (34%), Positives = 196/353 (55%), Gaps = 18/353 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +L++GI+FGG S EH +S++SA+ + +D +++ +GI + G W + D Sbjct: 1 MGRLKIGILFGGLSEEHPISIKSAREVQKHLDLEKYEPYYIGITQSGSWMLCDGPAEDWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 D L P + +DV+ P++HG GEDG++QG+L Sbjct: 61 NGDVRPAVLSPDRGVHGLLVLDEGKY--------ETIALDVVLPVLHGKFGEDGAMQGLL 112 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 ++ +P+VG D+ +S C+DK +T ++R AG+ F +T N + L Sbjct: 113 EISGIPYVGCDLPSSVMCIDKSLTYSVVRGAGIATPTFHIVTPDNDVDPDA------LNY 166 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-NP 239 P+FVKPA GSS GVSKV+S+E+ A+ A ++D K+++E+ + G EI C++LG+ + Sbjct: 167 PVFVKPARSGSSFGVSKVSSKEELPAALAEARQYDAKILIEEAVIGSEIGCSILGDGEDL 226 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 A + LT F+ + E G++ +VPA I D ++ A Y+ LGC+ Sbjct: 227 FAGEVDRVALTHGFFKIHQEKSPETGSENSSFIVPADIPDASRDLVQETAKVIYRALGCS 286 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 G+ARVD+FL + VV+NE+NTLPG T+ S YP++ A+GL D+I RL++L Sbjct: 287 GLARVDLFLKEDGSVVLNEVNTLPGLTSYSRYPRMMNAAGLSLGDVIDRLVKL 339 >ref|NP_337574.1| (NC_002755) D-alanine--D-alanine ligase [Mycobacterium tuberculosis CDC1551] gb|AAK47388.1| (AE007126) D-alanine--D-alanine ligase [Mycobacterium tuberculosis CDC1551] Length = 373 Score = 253 bits (646), Expect = 2e-66 Identities = 152/363 (41%), Positives = 220/363 (59%), Gaps = 16/363 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 ++RV +VFGG+S EH +S SA +I+ +D RFDV+ +GI G W ++DA+ L Sbjct: 10 RVRVAVVFGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTIT 69 Query: 63 DPAHIALRPSATSLAQVPG----KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118 + ++ + + +P + + G+ L +VDV+FP++HG GEDG++QG Sbjct: 70 NRELPQVKSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQG 129 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 +L +A +P+VG+ VLASA MDK+ TK+LL GL + + L + +L Sbjct: 130 LLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLH--RQECERL 187 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG--N 236 GLP+FVKPA GSS+GVS+V+S +Q AV A D KVIVE I GRE+EC VL + Sbjct: 188 GLPVFVKPARGGSSIGVSRVSSWDQLPAAVARARRHDPKVIVEAAISGRELECGVLEMPD 247 Query: 237 DNPQASTCGE------IVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 +AST GE FY + TKY+D D A++ VPA + ++ + IR +A++A+ Sbjct: 248 GTLEASTLGEIRVAGVRGREDSFYDFATKYLD-DAAELDVPAKVDDQVAEAIRQLAIRAF 306 Query: 291 QTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + C G+ARVD FLT + VINEINT+PGFT ISMYP++W ASG+ Y L+ +IE A Sbjct: 307 AAIDCRGLARVDFFLTDDG-PVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIETA 365 Query: 351 LER 353 L R Sbjct: 366 LAR 368 >gb|AAA60990.1| (L29638) ligase [Enterococcus casseliflavus] Length = 350 Score = 253 bits (646), Expect = 2e-66 Identities = 123/352 (34%), Positives = 182/352 (50%), Gaps = 9/352 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKS--RFDVVLLGIDKQ-GQWHVSDASNYLLN 60 ++ I+FGG S E+ VSL SA + ++A+ S +D+ L+GI W++ + Sbjct: 2 KKIAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIR 61 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 D ++ E Q DV+FPI+HG GEDGS+QG+ Sbjct: 62 QDTWL-----LDTKHKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLF 116 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + LP+VG V SA CM+K + + G+ AP I LT G Sbjct: 117 ELMKLPYVGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGF 176 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+F KP GSS G++KVT E+ A A+ AF + V++++ I G EI C +LGND+ Sbjct: 177 PVFFKPNEAGSSKGITKVTCVEEIASALKEAFTYCSAVLLQKNIAGVEIGCGILGNDSLT 236 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 C I L F+ ++ KY AK+ VPA + I K++ A Y++LG G+AR Sbjct: 237 VGACDAISLVDGFFDFEEKYQL-ISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLAR 295 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 +D F+T E+ +NEINT+PGFT+ S YP + A GL Y +L+ +L+ LA E Sbjct: 296 IDFFVTERGELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLLVLAKE 347 >ref|NP_296522.1| (NC_002620) UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase [Chlamydia muridarum] pir||B81737 UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase TC0143 [imported] - Chlamydia muridarum (strain Nigg) gb|AAF39021.1| (AE002281) UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase [Chlamydia muridarum] Length = 833 Score = 253 bits (646), Expect = 2e-66 Identities = 102/370 (27%), Positives = 175/370 (46%), Gaps = 30/370 (8%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +KL +G++ GG+S EH++S+ SA+NI + S ++V I ++G W + Sbjct: 476 KKLSLGLICGGRSCEHDISILSAQNIAKYLSHSFYEVQYFLITREGLWKTGSSL------ 529 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 ++ + + D + L VDVI PI+HG GEDG++QG L Sbjct: 530 ----------------ELSEETGKTIFDPEIAGKLSKVDVILPILHGPYGEDGAMQGFLE 573 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT---RANRHNISFAEVESKL 178 P+ G ++ +A M+K +TKR + D G+ + P++ LT A++++ Sbjct: 574 TIGKPYTGPSLVFAAIGMNKVLTKRFMSDLGIPVVPYLPLTLKGWKQDQEKCLAQIKAAF 633 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGND 237 P+FVK + GSS+GV +V + A++ AF D V +E+ G REIE + LG+ Sbjct: 634 SFPMFVKSVHLGSSIGVFEVHDTNELRDAINEAFVRDDDVFIEESRLGCREIEVSFLGDG 693 Query: 238 NPQASTCG--EIVLTSDFYAYDTKY--IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 + G E F Y KY A++V ++ E +++ +A + Y+ L Sbjct: 694 SGVFFVAGMHERRGRGGFIDYQEKYGLSGRASAQIVFDVDLSKETREQLLGVAEKIYRLL 753 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G R+D F+ E ++EIN +PG T S + + G ++ +L+ L+R Sbjct: 754 QGKGSCRIDFFVDNEGSFWLSEINPIPGMTTASPFLAAFVRKGWNREQIVHQLVIDGLQR 813 Query: 354 HAADNALKTT 363 L +T Sbjct: 814 FDQRQRLIST 823 >ref|NP_243491.1| (NC_002570) pyruvate carboxylase [Bacillus halodurans] dbj|BAB06344.1| (AP001516) pyruvate carboxylase [Bacillus halodurans] Length = 1150 Score = 252 bits (644), Expect = 4e-66 Identities = 53/326 (16%), Positives = 103/326 (31%), Gaps = 23/326 (7%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ--VPGK 82 KNI + +R ++ + + H+ + Y H A + + P + Sbjct: 5 KNIKKVLVANRGEIAIRIFRACTELHIRTVAIYSKEDTGAYHRYKADEAYLVGEGKKPIE 64 Query: 83 HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKD 142 + VD I P +G L E+ + F+G ++ DK Sbjct: 65 AYLDIEGIIEIAKRHGVDAIHPG-YGFLSENIEFAKRCHEEGIIFIGPELEHLVMFGDKV 123 Query: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEE 202 + A L + P + K G P +K A G G+ V SE Sbjct: 124 QAREQAIKANLPVIPGSDGPVS--SLEDVKAFADKHGYPFIIKAALGGGGRGMRIVRSEN 181 Query: 203 QYAIAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYA 255 + + A + +V VE+ I+ + IE +L + + E Sbjct: 182 DVQESYERAKSEAKAAFGNDEVYVEKFIENPKHIEVQILADKHGNTLHLYER--DCSVQR 239 Query: 256 YDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINE 315 K ++ V +++ ++ ++I AVQ + + V+ + E E Sbjct: 240 RHQKVVE-----VAPSVSLSEDVRERICQAAVQLAENVNYVNAGTVEFLVDREGNFYFIE 294 Query: 316 INTLPGFTNISMYPKLWQASGLGYTD 341 +N + +G+ Sbjct: 295 VNPRIQVEHT----ITEMVTGIDIVQ 316 >ref|NP_217497.1| (NC_000962) ddlA [Mycobacterium tuberculosis H37Rv] sp|P95114|DDL_MYCTU D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||B70673 probable ddlA - Mycobacterium tuberculosis (strain H37RV) emb|CAB05431.1| (Z83018) ddlA [Mycobacterium tuberculosis H37Rv] Length = 373 Score = 252 bits (643), Expect = 5e-66 Identities = 151/363 (41%), Positives = 219/363 (59%), Gaps = 16/363 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 ++RV +VFGG+S EH +S SA +I+ +D RFDV+ +GI G W ++DA+ L Sbjct: 10 RVRVAVVFGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTIT 69 Query: 63 DPAHIALRPSATSLAQVPG----KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118 + ++ + + +P + + G+ L +VDV+FP++HG GEDG++QG Sbjct: 70 NRELPQVKSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQG 129 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 +L +A +P+VG+ VLASA MDK+ TK+LL GL + + L + +L Sbjct: 130 LLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLH--RQECERL 187 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG--N 236 GLP+FVKPA GSS+GVS+V+S +Q AV A D KVIVE I GRE+EC VL + Sbjct: 188 GLPVFVKPARGGSSIGVSRVSSWDQLPAAVARARRHDPKVIVEAAISGRELECGVLEMPD 247 Query: 237 DNPQASTCGE------IVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 +AST GE FY + TKY+D D A++ VPA + ++ + IR +A++A+ Sbjct: 248 GTLEASTLGEIRVAGVRGREDSFYDFATKYLD-DAAELDVPAKVDDQVAEAIRQLAIRAF 306 Query: 291 QTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + C G+ARVD FLT + VINEINT+PGFT ISMYP++W ASG+ Y L+ +IE Sbjct: 307 AAIDCRGLARVDFFLTDDG-PVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIETT 365 Query: 351 LER 353 L R Sbjct: 366 LAR 368 >sp|Q9PLG1|MUDD_CHLMU MURC/DDL BIFUNCTIONAL ENZYME [INCLUDES: UDP-N-ACETYLMURAMATE--ALANINE LIGASE (UDP-N-ACETYLMURAMOYL-L-ALANINE SYNTHETASE); D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE)] Length = 802 Score = 251 bits (642), Expect = 6e-66 Identities = 102/370 (27%), Positives = 175/370 (46%), Gaps = 30/370 (8%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +KL +G++ GG+S EH++S+ SA+NI + S ++V I ++G W + Sbjct: 445 KKLSLGLICGGRSCEHDISILSAQNIAKYLSHSFYEVQYFLITREGLWKTGSSL------ 498 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 ++ + + D + L VDVI PI+HG GEDG++QG L Sbjct: 499 ----------------ELSEETGKTIFDPEIAGKLSKVDVILPILHGPYGEDGAMQGFLE 542 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT---RANRHNISFAEVESKL 178 P+ G ++ +A M+K +TKR + D G+ + P++ LT A++++ Sbjct: 543 TIGKPYTGPSLVFAAIGMNKVLTKRFMSDLGIPVVPYLPLTLKGWKQDQEKCLAQIKAAF 602 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGND 237 P+FVK + GSS+GV +V + A++ AF D V +E+ G REIE + LG+ Sbjct: 603 SFPMFVKSVHLGSSIGVFEVHDTNELRDAINEAFVRDDDVFIEESRLGCREIEVSFLGDG 662 Query: 238 NPQASTCG--EIVLTSDFYAYDTKY--IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 + G E F Y KY A++V ++ E +++ +A + Y+ L Sbjct: 663 SGVFFVAGMHERRGRGGFIDYQEKYGLSGRASAQIVFDVDLSKETREQLLGVAEKIYRLL 722 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G R+D F+ E ++EIN +PG T S + + G ++ +L+ L+R Sbjct: 723 QGKGSCRIDFFVDNEGSFWLSEINPIPGMTTASPFLAAFVRKGWNREQIVHQLVIDGLQR 782 Query: 354 HAADNALKTT 363 L +T Sbjct: 783 FDQRQRLIST 792 >ref|NP_440997.1| (NC_000911) D-alanine:D-alanine ligase-related protein [Synechocystis sp. PCC 6803] sp|P73632|DDL_SYNY3 D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||S77119 D-alanine--D-alanine ligase (EC 6.3.2.4) A - Synechocystis sp. (strain PCC 6803) dbj|BAA17677.1| (D90908) D-alanine:D-alanine ligase-related protein [Synechocystis sp. PCC 6803] Length = 354 Score = 251 bits (641), Expect = 9e-66 Identities = 145/363 (39%), Positives = 216/363 (58%), Gaps = 27/363 (7%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAI----DKSRFDVVLLGIDKQGQWHVSDASNYLL 59 +RVG++FGG S EHEVS++SA+ I A+ +++++ V I K G W D S +L Sbjct: 1 MRVGLLFGGCSGEHEVSIKSAQAIAKALASDDNQTKYQVSPFYIQKNGVWLGPDVSQQVL 60 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 + P A Q P ++V FPI+HG GEDG++QG+ Sbjct: 61 DQGVPWGDQPVT-AGQRWQFPP-------------EAARMEVWFPILHGPNGEDGTVQGL 106 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNI------SFAE 173 + +P+VGS VL S MDK K + AGL ++ + R + + Sbjct: 107 FSLMQVPYVGSGVLGSCVGMDKLAMKMVFERAGLPQVNYMGVERGEIWSNPCVFPALCEK 166 Query: 174 VESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGI-KGREIECA 232 +E+++G P FVKPAN GSSVG++KV + + A+D A +D ++IVE G+ RE+ECA Sbjct: 167 IEAQVGYPCFVKPANLGSSVGIAKVRNRSELEAALDNAASYDRRIIVEAGLTDIREVECA 226 Query: 233 VLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 VLGN+NPQAS GEI SDFY Y+TKY D +++ +PA + + ++I+ +A+QA++ Sbjct: 227 VLGNENPQASVVGEITYDSDFYDYETKYTDGR-SQMHIPANLPKAVVNQIQTMAIQAFKA 285 Query: 293 LGCAGMARVDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 + AG+ R+D F P ++VINEINTLPGFT SMYP+LW+ASG+ + L+ RL++LAL Sbjct: 286 VDAAGLGRLDFFYQPTTGQIVINEINTLPGFTAFSMYPELWRASGVEFPSLVDRLLQLAL 345 Query: 352 ERH 354 + H Sbjct: 346 DYH 348 >ref|NP_076133.1| (NM_023644) methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [Mus musculus] gb|AAG50244.1|AF310338_1 (AF310338) 3-methylcrotonyl-CoA carboxylase alpha subunit [Mus musculus] Length = 717 Score = 250 bits (638), Expect = 2e-65 Identities = 60/346 (17%), Positives = 120/346 (34%), Gaps = 25/346 (7%) Query: 13 KSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPS 72 K + +I + +R ++ I + V + Y + H+ + Sbjct: 31 KLRTMKYGTTPGGSITKVLIANRGEIACRVIRTAKKMGVQSVAVYSEADRNSMHVDMADE 90 Query: 73 ATSLAQVPGKHEHQ-LIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSD 131 A S+ P + + + I P +G L E+ + + + F+G Sbjct: 91 AYSIGPAPSQQSYLAMEKIIQVAKSSAAQAIHPG-YGFLSENMEFAELCKQEGIIFIGPP 149 Query: 132 VLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGS 191 A K +K ++ AG+ + ++ + E K+G P+ +K G Sbjct: 150 SSAIRDMGIKSTSKSIMAAAGVPVVEGY--HGKDQSDQCLREHAGKIGYPVMIKAVRGGG 207 Query: 192 SVGVSKVTSEEQYAIAVDLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTC 244 G+ V SE ++ ++ A D +++E+ + R +E V G+ + A Sbjct: 208 GKGMRIVRSEREFQEQLESARREAKKSFNDDAMLIEKFVDTPRHVEVQVFGDHHGNAVYL 267 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 E K I+E I PE+ K+ AV+A + + G V+ Sbjct: 268 FER--DCSVQRRHQKIIEE-----APAPGINPEVRRKLGEAAVRAAKAVKYVGAGTVEFI 320 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + + E+NT + P +G L+ + +A Sbjct: 321 MDSRHNFYFMEMNTRLQVEH----PVTEMITGTD---LVEWQLRIA 359 >dbj|BAB25253.1| (AK007782) putative [Mus musculus] Length = 717 Score = 249 bits (637), Expect = 2e-65 Identities = 60/346 (17%), Positives = 120/346 (34%), Gaps = 25/346 (7%) Query: 13 KSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPS 72 K + +I + +R ++ I + V + Y + H+ + Sbjct: 31 KLRTMKYGTTPGGSITKVLIANRGEIACRVIRTAKKMGVQSVAVYSEADRNSMHVDMADE 90 Query: 73 ATSLAQVPGKHEHQ-LIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSD 131 A S+ P + + + I P +G L E+ + + + F+G Sbjct: 91 AYSIGPAPSQQSYLAMEKIIQVAKSSAAQAIHPG-YGFLSENMEFAELCKQEGIIFIGPP 149 Query: 132 VLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGS 191 A K +K ++ AG+ + ++ + E K+G P+ +K G Sbjct: 150 SSAIRDMGIKSTSKSIMAAAGVPVVEGY--HGKDQSDQCLREHAGKIGYPVMIKAVRGGG 207 Query: 192 SVGVSKVTSEEQYAIAVDLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTC 244 G+ V SE ++ ++ A D +++E+ + R +E V G+ + A Sbjct: 208 GKGMRIVRSEREFQEQLESARREAKKSFNDDAMLIEKFVDTPRHVEVQVFGDHHGNAVYL 267 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 E K I+E I PE+ K+ AV+A + + G V+ Sbjct: 268 FER--DCSVQRRHQKIIEE-----APAPGINPEVRRKLGEAAVRAAKAVKYVGAGTVEFI 320 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + + E+NT + P +G L+ + +A Sbjct: 321 MDSRHNFYFMEMNTRLQVEH----PVTEMITGTD---LVEWQLRIA 359 >ref|NP_219107.1| (NC_000919) D-alanine--D-alanine ligase (ddlA) [Treponema pallidum] sp|O83676|DDL_TREPA D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||A71296 D-alanine--D-alanine ligase (EC 6.3.2.4) A ddlA - syphilis spirochete gb|AAC26568.1| (AE001241) D-alanine--D-alanine ligase (ddlA) [Treponema pallidum] Length = 396 Score = 249 bits (637), Expect = 3e-65 Identities = 128/346 (36%), Positives = 203/346 (57%), Gaps = 5/346 (1%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 V +++GG+SAEH+VS++SA+ + + + V+L+GI ++G W+ A Sbjct: 3 HVTLLYGGRSAEHDVSVRSARFVARTL-CLQHTVMLIGITRRGVWYAQPACALEQLCTGT 61 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 ++++ + G P T DV+FP++HG+ GEDG++QG+L + Sbjct: 62 VALSIQEDEKRRVCLVPGGGTAGAFVIAGMPCVT-DVVFPVLHGSYGEDGTVQGLLEMLQ 120 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR---HNISFAEVESKLGLP 181 +P+VG V ASA MDK K L + AGL + PF+ + A++E++LG P Sbjct: 121 VPYVGCGVCASALAMDKVKAKMLWQAAGLPVLPFVFFRKDAWRMHMQEFVAQLETRLGYP 180 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 LFVKPA GSSVG S V + A++ AF++D V+VE+ ++ REIECA+ GN Sbjct: 181 LFVKPAQAGSSVGASAVQTRAPLIPAIEAAFQWDEVVLVERYVRAREIECALSGNGPYTV 240 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 GE++ FY Y+ KY D A+V+V A + ++I +A++AY+ LG G+ARV Sbjct: 241 HGAGEVIAQGAFYDYEEKYADASVARVLVTAPLETAQYEQITTLALRAYEALGLTGLARV 300 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 D FL EV +NE+NT+PGFT+IS++P++ QA+G+ DL+ +L+ Sbjct: 301 DFFLLETGEVYVNEVNTMPGFTSISLFPQICQAAGVAPQDLMAQLL 346 >pdb|1EHI|A Chain A, D-Alanine:d-Lactate Ligase (Lmddl2) Of Vancomycin-Resistant Leuconostoc Mesenteroides pdb|1EHI|B Chain B, D-Alanine:d-Lactate Ligase (Lmddl2) Of Vancomycin-Resistant Leuconostoc Mesenteroides Length = 377 Score = 248 bits (634), Expect = 5e-65 Identities = 129/369 (34%), Positives = 213/369 (56%), Gaps = 13/369 (3%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSR-FDVVLLGIDKQGQWHVSDASNYLL 59 M K RV ++FGG S+EH+VS +SA+N +AI+ + +++++ I + G + +++S +L Sbjct: 1 MTKKRVALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKIL 60 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 +D I T A P H L A + D+ FP+VHG LGEDG+LQG+ Sbjct: 61 ALEDEQPIVDAFMKTVDASDPLARIHALKSAGDF------DIFFPVVHGNLGEDGTLQGL 114 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ + P+VG+ + A DK +TK LL G+ +I + + +N S+ ++ ++LG Sbjct: 115 FKLLDKPYVGAPLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELG 174 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGNDN 238 +FVK ANQGSSVG+S+VT+ E+Y A+ +F++D+KV++E+ + G RE+E V+GND Sbjct: 175 NIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVNGARELEVGVIGNDQ 234 Query: 239 PQASTCGEIVLT-----SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 P S G + +Y Y+ K++D +PA ++PE+ +++ +A+ AY+ L Sbjct: 235 PLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQLSPEVTKEVKQMALDAYKVL 294 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G AR+D L N + E NTLPGFTN+S++ +LW S + L+ LI+ E Sbjct: 295 NLRGEARMDFLLDENNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLIDYGFED 354 Query: 354 HAADNALKT 362 A + L Sbjct: 355 FAQNKKLSY 363 >gb|AAL27442.1|AF430807_7 (AF430807) VanE [Enterococcus faecalis] Length = 352 Score = 248 bits (633), Expect = 8e-65 Identities = 110/354 (31%), Positives = 198/354 (55%), Gaps = 8/354 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 V I+FGG S+E+EVSL+SA I+ ++ ++V+ +GI ++G W++ + + + D Sbjct: 2 KTVAIIFGGVSSEYEVSLKSAVAIIKNMESIDYNVMKIGITEEGHWYLFEGTTDKIKKDR 61 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 L S + K +N + + D++FP++HG GE+G++QG+ + Sbjct: 62 WF---LDESCEEIVVDFAKKS---FVLKNSKKIIKPDILFPVLHGGYGENGAMQGVFELL 115 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 ++P+VG + A+A M+K + + G+ P + + + G PL+ Sbjct: 116 DIPYVGCGIGAAAISMNKIMLHQFAEAIGVKSTPSMIIEKGQDLQ-KVDAFAKIHGFPLY 174 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 +KP GSS G+SKV + A+D A ++D ++++++ +KG EI C +LGN+ Sbjct: 175 IKPNEAGSSKGISKVERKSDLYKAIDEASKYDSRILIQKEVKGVEIGCGILGNEQLVVGE 234 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 C +I L F+ Y+ KY + A++++PA ++ + + I+ A + Y+ LGC G+AR+D Sbjct: 235 CDQISLVDGFFDYEEKY-NLVTAEILLPAKLSIDKKEDIQMKAKKLYRLLGCKGLARIDF 293 Query: 304 FLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 FLT + E+++NEINT+PGFT S +P + G+ Y ++I L+ LA+E H Sbjct: 294 FLTDDGEILLNEINTMPGFTEHSRFPMMMNEIGMDYKEIIENLLVLAVENHEKK 347 >pir||T02431 acetyl-CoA carboxylase (EC 6.4.1.2), biotin carboxylase - common tobacco gb|AAC41659.1| (L38260) biotin carboxylase subunit [Nicotiana tabacum] prf||2118337A Ac-CoA carboxylase:SUBUNIT=biotin carboxylase [Nicotiana tabacum] Length = 536 Score = 247 bits (632), Expect = 1e-64 Identities = 60/358 (16%), Positives = 126/358 (34%), Gaps = 26/358 (7%) Query: 13 KSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPS 72 KS+ +L + + +R ++ + I + + + Y D H+ L Sbjct: 57 KSSTRGGALAATCRAEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADE 116 Query: 73 ATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDV 132 + + + P + +I + + +G L E+ M R + F+G + Sbjct: 117 SVCIGEAPSNQSYLVIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNP 176 Query: 133 LASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSS 192 + DK + +++AG+ P + + ++G P+ +K G Sbjct: 177 DSIRVMGDKSTARDTMKNAGVPTVPGSDGLLQSTEEG--VRLAEEIGYPVMIKATAGGGG 234 Query: 193 VGVSKVTSEEQYAIAVDLAF------EFDHKVIVEQGI-KGREIECAVLGNDNPQASTCG 245 G+ +++ + A + V +E+ + R IE VL + G Sbjct: 235 RGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFG 294 Query: 246 EIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFL 305 E + K ++E A+ PE+ + + AV A ++G G+ V+ L Sbjct: 295 ER--DCSIQRRNQKLLEE-----APSPALTPELRNAMGDAAVAAAASIGYIGVGTVEFLL 347 Query: 306 TPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE---RHAADNAL 360 E+NT + P + DLI I +A+ R+ ++ + Sbjct: 348 DERGSFYFMEMNTRIQVEH----PVTEM---ISSVDLIEEQIRVAMGEKLRYKQEDIV 398 >gb|AAB18338.1| (U75444) D-Ala-D-Ala ligase2 [Leuconostoc mesenteroides] Length = 377 Score = 247 bits (631), Expect = 1e-64 Identities = 129/369 (34%), Positives = 213/369 (56%), Gaps = 13/369 (3%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSR-FDVVLLGIDKQGQWHVSDASNYLL 59 M K RV ++FGG S+EH+VS +SA+N +AI+ + +++++ I + G + +++S +L Sbjct: 1 MTKKRVALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKIL 60 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 +D I T A P H L A + D+ FP+VHG LGEDG+LQG+ Sbjct: 61 ALEDEQPIVDAFMKTVDASDPLARIHALKSAGDF------DIFFPVVHGNLGEDGTLQGL 114 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ + P+VG+ + A DK +TK LL G+ +I + + +N S+ ++ ++LG Sbjct: 115 FKLLDKPYVGAPLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELG 174 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGNDN 238 +FVK ANQGSSVG+S+VT+ E+Y A+ +F++D+KV++E+ + G RE+E V+GND Sbjct: 175 NIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVNGARELEVGVIGNDQ 234 Query: 239 PQASTCGEIVLT-----SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 P S G + +Y Y+ K++D +PA ++PE+ +++ +A+ AY+ L Sbjct: 235 PLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFEIPAQLSPEVTKEVKQMALDAYKVL 294 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G AR+D L N + E NTLPGFTN+S++ +LW S + L+ LI+ E Sbjct: 295 NLRGEARMDFLLDENNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLIDYGFED 354 Query: 354 HAADNALKT 362 A + L Sbjct: 355 FAQNKKLSY 363 >sp|Q9ZBR9|DDL_STRCO D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||T35644 D-alanine-D-alanine ligase - Streptomyces coelicolor emb|CAA22403.1| (AL034447) D-alanine-D-alanine ligase [Streptomyces coelicolor A3(2)] Length = 389 Score = 247 bits (630), Expect = 1e-64 Identities = 129/368 (35%), Positives = 205/368 (55%), Gaps = 18/368 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVS--DASNYLLN 60 K RV +VFGG+S+EH +S+ +A ++ AID++R+DV+ +GI + G+W ++ + + Sbjct: 20 KPRVAVVFGGRSSEHGISVVTAGAVLAAIDRTRYDVLPIGITRDGRWALTADEPERMAIT 79 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQN-----GQPLPTVDVIFPIVHGTLGEDGS 115 + +T + + + L VDV+FP++HG GEDG+ Sbjct: 80 ERRTPDVEELAESTEGGVLLPVDPANREVVYSEPGSVPKALGEVDVVFPVLHGPYGEDGT 139 Query: 116 LQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR------HNI 169 LQG+L ++ +P+VG+ VLASA DK+ K + GL + P+ + Sbjct: 140 LQGLLELSGVPYVGAGVLASAVGQDKEYMKAVFTSYGLKVGPYAVIRPREWEQDRSGARK 199 Query: 170 SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 + + G PLFVKPA GSS+G++KV A++ A D K++VE ++GREI Sbjct: 200 KIVDFAGEHGWPLFVKPARAGSSIGITKVDDLAGLDEAIEEARRHDPKILVEAALRGREI 259 Query: 230 ECAVLGNDNPQASTCGEIVLT---SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIA 286 EC VL ++ ++ + +Y ++ KYI D +VPA + E +++ +A Sbjct: 260 ECGVLEFEDGPRASVPAEIPPPSEHAYYDFEAKYI--DSTPGIVPAPLTAEETAEVQRLA 317 Query: 287 VQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 V A+ C G+ R D FLT ++E VINEINT+PGFT ISMYP++WQASG+ Y +L+ RL Sbjct: 318 VAAFDAASCEGLVRADFFLTEDDEFVINEINTMPGFTPISMYPQMWQASGVSYPELVDRL 377 Query: 347 IELALERH 354 ++ AL R Sbjct: 378 VQAALRRP 385 >sp|Q48745|DDL_LEUME D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAA87679.1| (U08909) putative D-alanine:D-alanine ligase [Leuconostoc mesenteroides] Length = 377 Score = 247 bits (630), Expect = 2e-64 Identities = 128/369 (34%), Positives = 212/369 (56%), Gaps = 13/369 (3%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDK-SRFDVVLLGIDKQGQWHVSDASNYLL 59 M K RV ++FGG S+EH+VS +SA+N +AI+ ++++++ I + G + +++S +L Sbjct: 1 MTKKRVALIFGGNSSEHDVSKRSAQNFYNAIEATDKYEIIVFAIAQNGFFLDTESSKKIL 60 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 +D I T P H L A + D+ FP+VHG LGEDG+LQG+ Sbjct: 61 ALEDEQPIVDAFMKTVDTSDPLARIHALKSAGDF------DIFFPVVHGNLGEDGTLQGL 114 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ + P+VG+ + A DK +TK LL G+ +I + + +N S+ ++ ++LG Sbjct: 115 FKLLDKPYVGAPLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELG 174 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGNDN 238 +FVK ANQGSSVG+S+VT+ E+Y A+ +F++D+KV++E+ + G RE+E V+GND Sbjct: 175 NIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVNGARELEVGVIGNDQ 234 Query: 239 PQASTCGEIVLT-----SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 P S G + +Y Y+ K++D +PA ++PE+ +++ +A+ AY+ L Sbjct: 235 PLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFEIPAQLSPEVTKEVKQMALDAYKVL 294 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G AR+D L N + E NTLPGFTN+S++ +LW S + L+ LI+ E Sbjct: 295 NLRGEARMDFLLDENNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLIDYGFED 354 Query: 354 HAADNALKT 362 A + L Sbjct: 355 FAQNKKLSY 363 >ref|NP_354336.1| (NC_003062) AGR_C_2451p [Agrobacterium tumefaciens] [Agrobacterium tumefaciens str. C58 (Cereon)] ref|NP_532020.1| (NC_003304) acetyl-CoA carboxylase, biotin carboxylase [Agrobacterium tumefaciens str. C58 (U. Washington)] gb|AAK87121.1| (AE008059) AGR_C_2451p [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAL42336.1| (AE009094) acetyl-CoA carboxylase, biotin carboxylase [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 448 Score = 247 bits (630), Expect = 2e-64 Identities = 60/333 (18%), Positives = 111/333 (33%), Gaps = 27/333 (8%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 + + +R ++ L + + + + + D H+ L + + P + + Sbjct: 1 MVSKILIANRGEIALRVLRAAKELGIPTVAVHSTADADAMHVRLADESVCIGPPPSRDSY 60 Query: 86 QLID-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 I + D + P +G L E+ +L + F+G DK Sbjct: 61 LNIHQIVAACEITGADAVHPG-YGFLSENAKFADILDAHGITFIGPTAEHIRIMGDKITA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K+ ++ G+ + P + E+ +G P+ +K G G+ +E Sbjct: 120 KQTAQELGIPVVPGSDGEVKPEN---ALEIARTIGFPVLIKATAGGGGRGMKVAKTEADL 176 Query: 205 AIAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 AV A + V +E+ + K R IE V G+ A GE Sbjct: 177 EDAVATARSEAAAAFGNDAVYMEKYLGKPRHIEVQVFGDGEGNAVHLGER--DCSLQRRH 234 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E A+ E KI I A + L G ++ E E+N Sbjct: 235 QKVLEE-----ANSPALTVEQRMKIGEICADAMRKLKYRGAGTIEFLY-ENGEFYFIEMN 288 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 T + P +G+ L+ I +A Sbjct: 289 TRLQVEH----PVTEAITGMD---LVQEQIRVA 314 >ref|NP_102052.1| (NC_002678) biotin carboxylase [Mesorhizobium loti] dbj|BAB47838.1| (AP002994) biotin carboxylase [Mesorhizobium loti] Length = 447 Score = 246 bits (627), Expect = 4e-64 Identities = 60/333 (18%), Positives = 112/333 (33%), Gaps = 26/333 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 + +R ++ L + + + + D H+ L + + P + + Sbjct: 1 MFQKILIANRGEIALRVLRACKELGIQTVVVHSTADADAMHVRLADESVCIGPPPSRDSY 60 Query: 86 QLID-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 I + D + P +G L E+ +L N+ F+G DK Sbjct: 61 LNIHQIVAACEITGADAVHPG-YGFLSENAKFADILAAHNITFIGPSGDHIRIMGDKIEA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 KR + G+ + P + +++G P+ +K + G G+ SE Sbjct: 120 KRTAKRLGIPVVPGSDGAVTEEKE--AKRIAAEIGYPVIIKASAGGGGRGMKVAHSEADL 177 Query: 205 AIAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 +A+ A D V +E+ ++ R IE V G+ + GE Sbjct: 178 EVALQTARSEAGAAFGDDAVYIEKYLQKPRHIEVQVFGDGFGRGVHFGER--DCSLQRRH 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K +E A+ E +I I +A LG +G ++ E E+N Sbjct: 236 QKVWEE-----ANSPALNAEERSRIGGICAKAIADLGYSGAGTIEFLY-ENGEFYFIEMN 289 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 T + P +G+ L+ I +A Sbjct: 290 TRLQVEH----PVTEAITGID---LVHEQIRVA 315 >ref|NP_385425.1| (NC_003047) PROBABLE BIOTIN CARBOXYLASE PROTEIN [Sinorhizobium meliloti] emb|CAC45898.1| (AL591786) PROBABLE BIOTIN CARBOXYLASE PROTEIN [Sinorhizobium meliloti] Length = 449 Score = 246 bits (627), Expect = 4e-64 Identities = 61/333 (18%), Positives = 114/333 (33%), Gaps = 27/333 (8%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 I + +R ++ L + + ++ + + D H+ L + + P + + Sbjct: 3 MISKILIANRGEIALRVLRACKELGIATVAVHSTADSDAMHVRLADESVCIGPPPSRESY 62 Query: 86 QLID-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 I + D + P +G L E+ +L + F+G DK Sbjct: 63 LNIHQIVAACEITGADAVHPG-YGFLSENAKFADILDAHGITFIGPTAEHIRLMGDKITA 121 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K+ + G+ + P + E+ ++G P+ +K G G+ +EE+ Sbjct: 122 KKTAEELGIPVVPGSDGEVRPEN---ALEIARQIGFPVLIKATAGGGGRGMKVARTEEEL 178 Query: 205 AIAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 AV A + V +E+ + K R IE V+G+ A GE Sbjct: 179 ENAVATARSEAAAAFGNDAVYMEKFLGKPRHIEIQVVGDGEGNAIHLGER--DCSLQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K +E A+ E KI + A + L G ++ E E+N Sbjct: 237 QKVWEE-----ANSPALNVEQRMKIGQVCADAMKKLKYRGAGTIEFLY-ENGEFYFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 T + P +G+ L+ I +A Sbjct: 291 TRLQVEH----PITEAITGID---LVHEQIRVA 316 >pir||T07093 acetyl-CoA carboxylase (EC 6.4.1.2) biotin carboxylase chain precursor - soybean gb|AAC02267.1| (AF007100) biotin carboxylase precursor [Glycine max] gb|AAF80468.1|AF163149_1 (AF163149) acetyl-CoA carboxylase [Glycine max] Length = 539 Score = 244 bits (623), Expect = 9e-64 Identities = 60/342 (17%), Positives = 120/342 (34%), Gaps = 26/342 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ + I + + + Y D H+ L A + + P + LI Sbjct: 74 KILIANRGEIAVRVIRTAHELGIPCVAVYSTIDKDALHVKLADEAVCIGEAPSSQSYLLI 133 Query: 89 DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLL 148 + + +G L E+ M R + F+G + + DK + + Sbjct: 134 PNVLSAAISRRCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVMGDKATARETM 193 Query: 149 RDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV 208 + AG+ P + + +++G P+ +K G G+ +++ + Sbjct: 194 KKAGVPTVPGSDGLL--QSTEEAIRLANEIGFPVMIKATAGGGGRGMRLAKEPDEFVKLL 251 Query: 209 DLAF------EFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYI 261 A + V +E+ I R IE VL + GE + K + Sbjct: 252 QQAKSEAAAAFGNDGVYLEKYIQNPRHIEFQVLADKYGNVVHFGER--DCSIQRRNQKLL 309 Query: 262 DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG 321 +E A+ PE+ + AV A ++G G+ ++ L E+NT Sbjct: 310 EE-----APSPALTPELRKAMGDAAVAAAASIGYIGVGTIEFLLDERGSFYFMEMNTRIQ 364 Query: 322 FTNISMYPKLWQASGLGYTDLITRLIELALE---RHAADNAL 360 + P + TDLI I +A+ R+ ++ + Sbjct: 365 VEH----PVTEM---ISSTDLIEEQIRVAMGEKLRYKQEDIV 399 >pir||T06279 acetyl-CoA carboxylase (EC 6.4.1.2), biotin carboxylase chain precursor - soybean gb|AAC23573.1| (AF068249) biotin carboxylase precursor [Glycine max] Length = 539 Score = 244 bits (623), Expect = 9e-64 Identities = 61/342 (17%), Positives = 119/342 (33%), Gaps = 26/342 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ + I + + + Y D H+ L A + + P + LI Sbjct: 74 KILIANRGEIAVRVIRTAHELGIPCVAVYSTIDKDALHVKLADEAVCIGEAPSSQSYLLI 133 Query: 89 DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLL 148 + + +G L E+ M R + F+G + + DK + + Sbjct: 134 PNVLSAAISRRCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVMGDKATARETM 193 Query: 149 RDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV 208 + AG+ P + + +++G P+ +K G G+ ++ + Sbjct: 194 KKAGVPTVPGSDGLL--QSTEEAIRLANEIGFPVMIKATAGGGGRGMRLAKEPAEFVKFL 251 Query: 209 DLAF------EFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYI 261 A + V +E+ I R IE VL + GE + K + Sbjct: 252 QQAKSEAAAAFGNDGVYLEKYIQNPRHIEFQVLADKYGNVVHFGER--DCSIQRRNQKLL 309 Query: 262 DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG 321 +E A+ PE+ + AV A ++G G+ V+ L E+NT Sbjct: 310 EE-----APSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQ 364 Query: 322 FTNISMYPKLWQASGLGYTDLITRLIELALE---RHAADNAL 360 + P + TDLI I +A+ R+ ++ + Sbjct: 365 VEH----PVTEM---ISSTDLIEEQIRVAMGEKLRYKQEDIV 399 >gb|AAF80469.1|AF163150_1 (AF163150) acetyl-CoA carboxylase [Glycine max] Length = 539 Score = 244 bits (622), Expect = 2e-63 Identities = 61/342 (17%), Positives = 118/342 (33%), Gaps = 26/342 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ + I + + + Y D H+ L A + + P + LI Sbjct: 74 KILIANRGEIAVRVIRTAHELGIPCVAVYSTIDKDALHVKLADEAVCIGEAPSSQSYLLI 133 Query: 89 DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLL 148 + + +G L E+ M R + F+G + + DK + + Sbjct: 134 PNVLSAAISRRCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVMGDKATARETM 193 Query: 149 RDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV 208 + AG+ P + + +++G P+ +K G G+ + + Sbjct: 194 KKAGVPTVPGSDGLL--QSTEEAIRLANEIGFPVMIKATAGGGGRGMRLAKEPAELVKFL 251 Query: 209 DLAF------EFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYI 261 A + V +E+ I R IE VL + GE + K + Sbjct: 252 QQAKSEAAAAFGNDGVYLEKYIQNPRHIEFQVLADKYGNVVHFGER--DCSIQRRNQKLL 309 Query: 262 DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG 321 +E A+ PE+ + AV A ++G G+ V+ L E+NT Sbjct: 310 EE-----APSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQ 364 Query: 322 FTNISMYPKLWQASGLGYTDLITRLIELALE---RHAADNAL 360 + P + TDLI I +A+ R+ ++ + Sbjct: 365 VEH----PVTEM---ISSTDLIEEQIRVAMGEKLRYKQEDIV 399 >emb|CAB09721.1| (Z97025) pyruvate carboxylase [Bacillus subtilis] Length = 384 Score = 242 bits (618), Expect = 4e-63 Identities = 57/344 (16%), Positives = 110/344 (31%), Gaps = 25/344 (7%) Query: 23 SAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ--VP 80 S ++I + +R ++ + + ++ + Y H A + + P Sbjct: 2 SQQSIQKVLVANRGEIAIRIFRACTELNIRTVAVYSKEDSGSYHRYKADEAYLVGEGKKP 61 Query: 81 GKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMD 140 + + VD I P +G L E+ + F+G D Sbjct: 62 IDAYLDIEGIIDIAKRNKVDAIHPG-YGFLSENIHFARRCEEEGIVFIGPKSEHLDMFGD 120 Query: 141 KDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTS 200 K + AG+ + P + + G P+ +K + G G+ V S Sbjct: 121 KVKAREQAEKAGIPVIPGSDG--PAETLEAVEQFGQANGYPIIIKASLGGGGRGMRIVRS 178 Query: 201 EEQYAIAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDF 253 E + A + A + +V VE+ I+ + IE V+G+ E Sbjct: 179 ESEVKEAYERAKSEAKAAFGNDEVYVEKLIENPKHIEVQVIGDKQGNVVHLFER--DCSV 236 Query: 254 YAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVI 313 K I+ V +++PE+ D+I AV + + V+ + NE Sbjct: 237 QRRHQKVIE-----VAPSVSLSPELRDQICEAAVALAKNVNYINAGTVEFLV-ANNEFYF 290 Query: 314 NEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 E+N + +G+ L+ H+ Sbjct: 291 IEVNPRVQVEHT----ITEMITGVDIVQTQI-LVAQGHSLHSKK 329 >ref|NP_171808.1| (NC_003070) putative 3-methylcrotonyl-CoA carboxylase [Arabidopsis thaliana] gb|AAL50065.1| (AY070723) At1g03090/F10O3_8 [Arabidopsis thaliana] Length = 734 Score = 242 bits (618), Expect = 4e-63 Identities = 57/333 (17%), Positives = 112/333 (33%), Gaps = 26/333 (7%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HEH 85 I + +R ++ + + + + Y D H+ A + + Sbjct: 38 IEKILVANRGEIACRIMRTAKRLGIQTVAVYSDADRDSLHVKSADEAVRIGPPSARLSYL 97 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + I P +G L E + + L F+G A DK +K Sbjct: 98 SGVTIMEAAARTGAQAIHPG-YGFLSESSDFAQLCEDSGLTFIGPPASAIRDMGDKSASK 156 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 R++ AG+ + P + ++ K+G P+ +KP + G G+ V S + +A Sbjct: 157 RIMGAAGVPLVPGYHGHEQDIDHM--KSEAEKIGYPIIIKPTHGGGGKGMRIVQSGKDFA 214 Query: 206 IAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 + A + +++E+ I + R IE + G+ + E Sbjct: 215 DSFLGAQREAAASFGVNTILLEKYITRPRHIEVQIFGDKHGNVLHLYER--DCSVQRRHQ 272 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEIN 317 K I+E I+ + + AV A + +G V+ + ++ E+N Sbjct: 273 KIIEE-----APAPNISEKFRANLGQAAVSAARAVGYYNAGTVEFIVDTESDQFYFMEMN 327 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 T + P G L+ I +A Sbjct: 328 TRLQVEH----PVTEMIVGQD---LVEWQIRVA 353 >ref|NP_539644.1| (NC_003317) D-ALANINE--D-ALANINE LIGASE A [Brucella melitensis] gb|AAL51908.1| (AE009514) D-ALANINE--D-ALANINE LIGASE A [Brucella melitensis] Length = 366 Score = 241 bits (616), Expect = 6e-63 Identities = 145/355 (40%), Positives = 221/355 (61%), Gaps = 12/355 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K+R+ ++FGG+SAEH+VS+ SA N+++A+D ++++ V + + + GQW +S N L Sbjct: 18 KMRIVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKP 77 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + L + DA +D+IFP++HG GEDG++QG+ +V Sbjct: 78 SSG------AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQV 131 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 A +P G + SA +DKD+ KRL+ +AGL+ A +T+TR +F+ +E LGLP+ Sbjct: 132 ARVPLAGCGIPGSANALDKDIAKRLVNEAGLSTAKSVTITREE--VPAFSALEQALGLPI 189 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP--Q 240 F+KPA QGSSVGV KV +E Y A+ F +D K++ E+ I+ RE+EC VL ++ Sbjct: 190 FIKPARQGSSVGVHKVVTEADYQAAMSDGFIYDDKLLAEEFIQAREVECGVLEDEGGALF 249 Query: 241 ASTCGEIVLTSDF--YAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 S GEIV Y+YD KYID DG ++ VPA + ++ ++IRAIA +A++ LGC M Sbjct: 250 VSRAGEIVPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSM 309 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 ARVD F+T + +V+NEINT+PGFT++SMY K+ SG+ Y ++I RL+ L R Sbjct: 310 ARVDFFVTADRRIVLNEINTIPGFTDMSMYFKVMAVSGVSYPEIINRLVAHGLAR 364 >gb|AAK25989.1|AF360279_1 (AF360279) putative biotin carboxylase [Arabidopsis thaliana] Length = 537 Score = 241 bits (616), Expect = 7e-63 Identities = 56/342 (16%), Positives = 116/342 (33%), Gaps = 26/342 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ + I + + + Y D H+ L A + + P + +I Sbjct: 76 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADEAVCIGEAPSNQSYLVI 135 Query: 89 DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLL 148 + + +G L E+ M R + F+G + + DK + + Sbjct: 136 PNVLSAAISRGCTMLHPGYGFLSENALFVEMCRDHGINFIGPNPDSIRVMGDKATARETM 195 Query: 149 RDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV 208 ++AG+ P + V +++G P+ +K G G+ ++ + Sbjct: 196 KNAGVPTVPGSDGLL--QSTEEAVRVANEIGFPVMIKATAGGGGRGMRLAKEPGEFVKLL 253 Query: 209 DLAF------EFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYI 261 A + +E+ + R IE VL + GE + K + Sbjct: 254 QQAKSEAAAAFGNDGCYLEKFVQNPRHIEFQVLADKFGNVVHFGER--DCSIQRRNQKLL 311 Query: 262 DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG 321 +E A+ E+ + AV A ++G G+ V+ L E+NT Sbjct: 312 EE-----APSPALTAELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQ 366 Query: 322 FTNISMYPKLWQASGLGYTDLITRLIELALE---RHAADNAL 360 + P + LI I +A+ R+ ++ + Sbjct: 367 VEH----PVTEMIYSVD---LIEEQIRVAMGEKLRYKQEDIV 401 >ref|NP_198386.1| (NC_003076) acetyl-CoA carboxylase [Arabidopsis thaliana] pir||T01180 acetyl-CoA carboxylase (EC 6.4.1.2), biotin carboxylase - Arabidopsis thaliana gb|AAC09008.1| (U90879) biotin carboxylase subunit [Arabidopsis thaliana] gb|AAC09009.1| (U91414) heteromeric acetyl-CoA carboxylase biotin carboxylase subunit [Arabidopsis thaliana] gb|AAC13611.1| (AF058826) Arabidopsis thaliana biotin carboxylase subunit (GB:U90879) dbj|BAB11486.1| (AB025636) acetyl-CoA carboxylase, biotin carboxylase [Arabidopsis thaliana] Length = 537 Score = 241 bits (615), Expect = 8e-63 Identities = 56/342 (16%), Positives = 116/342 (33%), Gaps = 26/342 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ + I + + + Y D H+ L A + + P + +I Sbjct: 76 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADEAVCIGEAPSNQSYLVI 135 Query: 89 DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLL 148 + + +G L E+ M R + F+G + + DK + + Sbjct: 136 PNVLSAAISRGCTMLHPGYGFLSENALFVEMCRDHGINFIGPNPDSIRVMGDKATARETM 195 Query: 149 RDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV 208 ++AG+ P + V +++G P+ +K G G+ ++ + Sbjct: 196 KNAGVPTVPGSDGLL--QSTEEAVRVANEIGFPVMIKATAGGGGRGMRLAKEPGEFVKLL 253 Query: 209 DLAF------EFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYI 261 A + +E+ + R IE VL + GE + K + Sbjct: 254 QQAKSEAAAAFGNDGCYLEKFVQNPRHIEFQVLADKFGNVVHFGER--DCSIQRRNQKLL 311 Query: 262 DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG 321 +E A+ E+ + AV A ++G G+ V+ L E+NT Sbjct: 312 EE-----APSPALTAELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQ 366 Query: 322 FTNISMYPKLWQASGLGYTDLITRLIELALE---RHAADNAL 360 + P + LI I +A+ R+ ++ + Sbjct: 367 VEH----PVTEMIYSVD---LIEEQIRVAMGEKLRYKQEDIV 401 >ref|NP_371638.1| (NC_002758) pyruvate carboxylase [Staphylococcus aureus subsp. aureus Mu50] ref|NP_374232.1| (NC_002745) pyruvate carboxylase [Staphylococcus aureus subsp. aureus N315] dbj|BAB42211.1| (AP003132) pyruvate carboxylase [Staphylococcus aureus subsp. aureus N315] dbj|BAB57276.1| (AP003361) pyruvate carboxylase [Staphylococcus aureus subsp. aureus Mu50] Length = 1150 Score = 241 bits (615), Expect = 8e-63 Identities = 53/337 (15%), Positives = 108/337 (31%), Gaps = 26/337 (7%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV--PGK 82 K I + +R ++ + + +S + Y H + + P + Sbjct: 2 KQIKKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAE 61 Query: 83 HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKD 142 + + VD I P +G L E+ + F+G + DK Sbjct: 62 SYLNIERIIDVAKQANVDAIHPG-YGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKV 120 Query: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEE 202 + A L + P + E + G PL +K + G G+ V E Sbjct: 121 KARTTAIKADLPVIPGTDGPIKSYEL--AKEFAEEAGFPLMIKATSGGGGKGMRIVREES 178 Query: 203 QYAIAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYA 255 + A A + +V +E+ I + IE V+G+++ E Sbjct: 179 ELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFER--DCSVQR 236 Query: 256 YDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINE 315 K ++ V ++P + +I A+Q + + V+ ++ + E E Sbjct: 237 RHQKVVE-----VAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSGD-EFFFIE 290 Query: 316 INTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 +N + +G+ T+++ A Sbjct: 291 VNPRVQVEHT----ITEMVTGIDIVK--TQILVAAGA 321 >dbj|BAA12072.1| (D83706) pyruvate carboxylase [Geobacillus stearothermophilus] Length = 1147 Score = 241 bits (615), Expect = 9e-63 Identities = 52/326 (15%), Positives = 103/326 (30%), Gaps = 24/326 (7%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ--VPGK 82 + I + +R ++ + + + + Y H A + + P + Sbjct: 4 RRIRKVLVANRGEIAIRVFRACTELGIRTVAIYSKEDVGSYHRYKADEAYLVGEGKKPIE 63 Query: 83 HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKD 142 + VD I P +G E+ R + F G + DK Sbjct: 64 AYLDIEGIIEIAKAHDVDAIHPG-YGFFSENIQFAKRCREEGIIFFGPNENHLDMFGDKV 122 Query: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEE 202 + +AG+ + P G P+ +K A G G+ V S+ Sbjct: 123 KARHAAVNAGIPVIPGSDGPV--DGLEDVVAFAEAHGYPIIIKAALGGGGRGMRFVRSKS 180 Query: 203 QYAIAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYA 255 + A + A +V VE+ I+ + IE +LG+ E Sbjct: 181 EVKEAFERAKSEAKAAFGSDEVYVEKLIENPKHIEVQILGDYEGNIVHLYER--DCSVQR 238 Query: 256 YDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINE 315 K ++ V +++ E+ +I AVQ +++G V+ ++ + E E Sbjct: 239 RHQKVVE-----VAPSVSLSDELRQRICEAAVQLMRSVGYVNAGTVEFLVSGD-EFYFIE 292 Query: 316 INTLPGFTNISMYPKLWQASGLGYTD 341 +N + +G+ Sbjct: 293 VNPRIQVEHT----ITEMITGIDIVQ 314 >ref|NP_251581.1| (NC_002516) probable biotin carboxylase/biotin carboxyl carrier protein [Pseudomonas aeruginosa] pir||F83284 probable biotin carboxylase/biotin carboxyl carrier protein PA2891 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG06279.1|AE004715_5 (AE004715) probable biotin carboxylase/biotin carboxyl carrier protein [Pseudomonas aeruginosa] Length = 661 Score = 241 bits (615), Expect = 9e-63 Identities = 56/330 (16%), Positives = 108/330 (31%), Gaps = 25/330 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ-VPGKHEHQL 87 + +R ++ + + + Y D H+ L A + + L Sbjct: 6 KILVANRGEIACRVLRTAHELGYRSVAVYSEADADTRHVQLADEAVCIGPAAVAQSYLNL 65 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + + I P +G L E+ A + F+G D A K ++K Sbjct: 66 EAILDAARRSGAEAIHPG-YGFLSENAEFARACEAAGIVFIGPDAEAIHLMGSKRLSKIA 124 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + AG+ P + + ++G PL +K + G G+ V Q Sbjct: 125 MLAAGVPCIPGYEGAEQDDA--TLRREAERIGYPLMIKASAGGGGRGMRLVEEPGQLLEQ 182 Query: 208 VDLAF------EFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 + A ++I+E+ + + R +E V G+ + GE K Sbjct: 183 LRTARSEALGAFGSAELILERAVLRPRHVEIQVFGDRHGNLLYLGER--DCSVQRRHQKV 240 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 I+E + ++ + AV+A ++ G V+ L + E+NT Sbjct: 241 IEE-----APCPVLDADLRRAMGEAAVKAAASVNYVGAGTVEFLLGEDGRFYFLEMNTRL 295 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELA 350 + P +G L+ I +A Sbjct: 296 QVEH----PVTELVTGQD---LVAWQIRIA 318 >ref|NP_534077.1| (NC_003305) propionyl-coenzyme A carboxylase, alpha polypeptide [Agrobacterium tumefaciens str. C58 (U. Washington)] gb|AAL44393.1| (AE009288) propionyl-coenzyme A carboxylase, alpha polypeptide [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 677 Score = 240 bits (612), Expect = 2e-62 Identities = 61/334 (18%), Positives = 122/334 (36%), Gaps = 25/334 (7%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHE 84 + I + +R ++ I + ++ + Y + H+ + A + P Sbjct: 10 RMIKKILIANRGEIACRVIKTAKKMGIATVAVYSDADANALHVKMADEAVHIGPAPSSQS 69 Query: 85 HQLID-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + +ID D + P +G L E+ + L A + F+G V A A DK Sbjct: 70 YIVIDKILEAIQKTGADAVHPG-YGFLSENAAFAQALEKAGVVFIGPPVGAIEAMGDKIT 128 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 +K+L AG++ P + ++ S++G P+ +K + G G+ +E + Sbjct: 129 SKKLAAKAGVSTVPGHMGLIEDADE--AVKIASQIGYPVMIKASAGGGGKGMRIAFNEAE 186 Query: 204 YAIAVDLAF------EFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 + D ++ +E+ + + R IE VLG+ + GE Sbjct: 187 AREGFQSSKNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDKHGTILYLGER--ECSIQRR 244 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEI 316 + K I+E + + AV + +G V+ + E E+ Sbjct: 245 NQKVIEE-----APSPFLDEATRHAMGEQAVALARAVGYHSAGTVEFIVDGERNFYFLEM 299 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 NT + P +G+ L+ ++I +A Sbjct: 300 NTRLQVEH----PVTELVTGID---LVEQMIRVA 326 >ref|NP_539717.1| (NC_003317) PROPIONYL-COA CARBOXYLASE ALPHA CHAIN, MITOCHONDRIAL [Brucella melitensis] gb|AAL51981.1| (AE009521) PROPIONYL-COA CARBOXYLASE ALPHA CHAIN, MITOCHONDRIAL [Brucella melitensis] Length = 667 Score = 240 bits (612), Expect = 2e-62 Identities = 61/333 (18%), Positives = 120/333 (35%), Gaps = 25/333 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 I + +R ++ I + ++ + Y + H+ + A + P + Sbjct: 1 MIKKILIANRGEIACRVIKSAKKKGIATVAVYSDADRNALHVKMADEAVHIGPAPSNQSY 60 Query: 86 QLID-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 +ID D + P +G L E+ L+ AN+ F+G V A A DK + Sbjct: 61 IVIDKILAAIKEIGADAVHPG-YGFLSENPRFAEALKAANVTFIGPPVNAIDAMGDKITS 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K+L +AG++ P + + +G P+ +K + G G+ ++E+ Sbjct: 120 KKLAAEAGVSTVPGHMGLIEDADE--AVRIAGSIGYPVMIKASAGGGGKGMRIAWNDEEA 177 Query: 205 AIAVDLAF------EFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 L+ D ++ +E+ + + R IE VLG+ + GE + Sbjct: 178 REGFQLSRNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDQHGNVVYLGER--ECSIQRRN 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E + + AV + +G V+ + E+N Sbjct: 236 QKVIEE-----APSPFLDEATRKAMGEQAVALAKAVGYYSAGTVEFIVDGNRNFYFLEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 T + P +G+ L+ +I +A Sbjct: 291 TRLQVEH----PVTELITGID---LVEEMIRVA 316 >gb|AAK60339.1| (AY034410) biotin carboxylase [Brassica napus] Length = 535 Score = 239 bits (609), Expect = 4e-62 Identities = 56/342 (16%), Positives = 117/342 (33%), Gaps = 26/342 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ + I + + + Y D H+ L A + + P + +I Sbjct: 74 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADEAVCIGEAPSNQSYLVI 133 Query: 89 DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLL 148 + + +G E+ M R + F+G + + DK + + Sbjct: 134 PNVLSAAISRGCTMLHPGYGFHSENALFVEMCREHRINFIGPNPDSIRVMGDKSTARETM 193 Query: 149 RDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV 208 ++AG+ P + ++ +++G P+ +K G G+ ++ + Sbjct: 194 KNAGVPTVPGSDGLLKSTEEG--VKLANEIGFPVMIKATAGGGGRGMRLANEPSEFVKLL 251 Query: 209 D------LAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYI 261 A + V +E+ + R IE +L + GE + K + Sbjct: 252 QAAKSEAAAAFGNDGVYLEKYVQNPRHIEFQILADKFGNVVHFGER--DCSIQRRNQKLL 309 Query: 262 DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG 321 +E A+ PE+ + AV A ++G G+ V+ L E+NT Sbjct: 310 EE-----APSPALTPELRKAMGDAAVAAAASIGYVGVGTVEFLLDERGSFYFMEMNTRIQ 364 Query: 322 FTNISMYPKLWQASGLGYTDLITRLIELALE---RHAADNAL 360 + P + LI I +A+ R+ D + Sbjct: 365 VEH----PVTEMIYSVD---LIEEQIRVAMGEKLRYTQDEIV 399 >ref|NP_214014.1| (NC_000918) biotin carboxylase [Aquifex aeolicus] pir||G70427 biotin carboxylase - Aquifex aeolicus gb|AAC07413.1| (AE000742) biotin carboxylase [Aquifex aeolicus] Length = 477 Score = 239 bits (609), Expect = 4e-62 Identities = 53/326 (16%), Positives = 108/326 (32%), Gaps = 22/326 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R +V + I + + + Y H+ A + P + + Sbjct: 4 KVLVANRGEVAVRIIRACKELGIKTVAIYSEADVRSLHVKKADEAYLITGDPIRAYLDYV 63 Query: 89 DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLL 148 + D I P +G L E+ R + F+G DK K+++ Sbjct: 64 RIVDLAKQVGADAIHPG-YGFLAENADFARYCRRRGITFIGPTPEQIEMFGDKVKAKKVM 122 Query: 149 RDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV 208 ++ GL P R ++G P+ +K A G G+ + +EE+ Sbjct: 123 KEVGLPTIPGT--EEPVRTLEDAKHAVKEIGFPVMLKAAYGGGGRGMRVIRNEEELEKNF 180 Query: 209 DLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYI 261 + AF + +E+ ++ + IE +LG+ GE K Sbjct: 181 ESAFREAETFFGKGDLFIEKYVENPKHIEVQILGDKYGNIIHLGER--DCSIQRRHQK-- 236 Query: 262 DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEINTLP 320 ++ + ++ KI AV+A +G ++ + E E+NT Sbjct: 237 ---LIEIAPSPKLPQDLRMKILGNAVRAMTRVGYENAGTLEFLVDLKTGEYYFIEMNTRL 293 Query: 321 GFTNISMYPKLWQASGLGYTDLITRL 346 + +G+ + + R+ Sbjct: 294 QVEHT----ITEAITGVDIVEAMIRI 315 >ref|NP_357031.1| (NC_003063) AGR_L_580GMp [Agrobacterium tumefaciens] [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAK89816.1| (AE008324) AGR_L_580GMp [Agrobacterium tumefaciens str. C58 (Cereon)] Length = 667 Score = 239 bits (609), Expect = 4e-62 Identities = 61/333 (18%), Positives = 121/333 (36%), Gaps = 25/333 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 I + +R ++ I + ++ + Y + H+ + A + P + Sbjct: 1 MIKKILIANRGEIACRVIKTAKKMGIATVAVYSDADANALHVKMADEAVHIGPAPSSQSY 60 Query: 86 QLID-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 +ID D + P +G L E+ + L A + F+G V A A DK + Sbjct: 61 IVIDKILEAIQKTGADAVHPG-YGFLSENAAFAQALEKAGVVFIGPPVGAIEAMGDKITS 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K+L AG++ P + ++ S++G P+ +K + G G+ +E + Sbjct: 120 KKLAAKAGVSTVPGHMGLIEDADE--AVKIASQIGYPVMIKASAGGGGKGMRIAFNEAEA 177 Query: 205 AIAVDLAF------EFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + D ++ +E+ + + R IE VLG+ + GE + Sbjct: 178 REGFQSSKNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDKHGTILYLGER--ECSIQRRN 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E + + AV + +G V+ + E E+N Sbjct: 236 QKVIEE-----APSPFLDEATRHAMGEQAVALARAVGYHSAGTVEFIVDGERNFYFLEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 T + P +G+ L+ ++I +A Sbjct: 291 TRLQVEH----PVTELVTGID---LVEQMIRVA 316 >ref|NP_437988.1| (NC_003078) putative propionyl-CoA carboxylase alpha chain protein [Sinorhizobium meliloti] emb|CAC49848.1| (AL603647) putative propionyl-CoA carboxylase alpha chain protein [Sinorhizobium meliloti] Length = 670 Score = 238 bits (607), Expect = 7e-62 Identities = 59/344 (17%), Positives = 117/344 (33%), Gaps = 22/344 (6%) Query: 24 AKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKH 83 + +R ++ I + + Y D H+ + A + P Sbjct: 2 GHMFKKILIANRGEIACRVIRTTKALGIPTVAVYSDADRDAMHVRMADEAVHIGPSPSSQ 61 Query: 84 EHQLID-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKD 142 + +I+ D + P +G L E+ + L + F+G V A A DK Sbjct: 62 SYIVIENILAAIRRTGADAVHPG-YGFLSENAAFAEALEKDGVTFIGPPVRAIEAMGDKI 120 Query: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEE 202 +K+L +AG+ P + A + +++G P+ +K + G G+ +E Sbjct: 121 TSKKLAAEAGVFTVPGHMGLIEDADE--AARIAAEIGFPVMIKASAGGGGKGMRIAWNER 178 Query: 203 QYAIAVDLAF------EFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYA 255 + + D ++ +E+ + + R IE VLG+ + GE Sbjct: 179 EAREGFQSSRNEAKSSFGDDRIFIEKFVTEPRHIEIQVLGDKHGNILYLGER--ECSIQR 236 Query: 256 YDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINE 315 + K I+E + + + AV + +G V+ + E Sbjct: 237 RNQKVIEE-----APSPFLDEKTRRAMGEQAVALAKAVGYHSAGTVEFIVDAGRNFYFLE 291 Query: 316 INTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 +NT + P +GL + + R+ A A + Sbjct: 292 MNTRLQVEH----PVTELVTGLDLVEQMIRVAAGAKLAFAQKDV 331 >ref|NP_241998.1| (NC_002570) biotin carboxylase [Bacillus halodurans] dbj|BAB04851.1| (AP001511) biotin carboxylase [Bacillus halodurans] Length = 452 Score = 235 bits (600), Expect = 5e-61 Identities = 55/335 (16%), Positives = 119/335 (35%), Gaps = 24/335 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 + +R ++ + I + ++ + Y D H+ A + + P + Sbjct: 1 MFKKVLIANRGEIAVRIIRTCQKLNIRTVAIYSEADVDSLHVKHADEAFLIGKPPVAESY 60 Query: 86 Q-LIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + VD I P +G L E+ A + F+G K Sbjct: 61 LKVDTILEVAKQAGVDAIHPG-YGLLSENARFARACVEAGISFIGPSPEVIERMGSKIAA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + ++ AG+ + P + A+ + K G P+ +K + G +G+ V ++E+ Sbjct: 120 RTAMQTAGVPVIPGSDVALADEEE--AVHLARKFGYPVMLKASAGGGGIGMQLVRNDEEM 177 Query: 205 AIAV------DLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A +F D + +E+ ++ R IE + + + E Sbjct: 178 RKAFAGNQKRATSFFGDGTMFLEKAVENPRHIEVQIAADHHGHVVHLWER--DCSIQRRH 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E + + +KI +AV+A + + + V+ + E + E+N Sbjct: 236 QKVVEE-----APSPFVDEALREKIGQLAVKAAKAIDYRNLGTVECLVDGEKNIYFLEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 T + P + +G+ + +L+ A E Sbjct: 291 TRLQVEH----PVTEEITGIDLVE--WQLLIAAGE 319 >ref|NP_225100.1| (NC_000922) Muramate-Ala Ligase & D-Ala-D-Ala Ligase [Chlamydophila pneumoniae CWL029] ref|NP_300962.1| (NC_002491) muramate-Ala ligase/D-Ala-D-Ala ligase [Chlamydophila pneumoniae J138] ref|NP_445498.1| (NC_002179) UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase [Chlamydophila pneumoniae AR39] sp|Q9Z701|MUDD_CHLPN MURC/DDL BIFUNCTIONAL ENZYME [INCLUDES: UDP-N-ACETYLMURAMATE--ALANINE LIGASE (UDP-N-ACETYLMURAMOYL-L-ALANINE SYNTHETASE); D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE)] pir||D72022 UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase CP0961 [imported] - Chlamydophila pneumoniae (strains CWL029 and AR39) gb|AAD19043.1| (AE001670) Muramate-Ala Ligase & D-Ala-D-Ala Ligase [Chlamydophila pneumoniae CWL029] gb|AAF38741.1| (AE002254) UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase [Chlamydophila pneumoniae AR39] dbj|BAA99113.1| (AP002548) muramate-Ala ligase/D-Ala-D-Ala ligase [Chlamydophila pneumoniae J138] Length = 809 Score = 235 bits (599), Expect = 7e-61 Identities = 100/368 (27%), Positives = 166/368 (44%), Gaps = 28/368 (7%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +KL +G+V GGKS EH++SL SA+++ I +DV I++QG W + Sbjct: 450 KKLSIGLVCGGKSCEHDISLLSAQHVSKYISPEFYDVSYFIINRQGLWRTGKDFPH---- 505 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 + + G A VD +FP++HG GEDG++QG Sbjct: 506 -------------LIEETQGDSPLSSEIASALAK---VDCLFPVLHGPFGEDGTIQGFFE 549 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT---RANRHNISFAEVESKL 178 + P+ G + +A MDK +TKR+ G+ + P+ L + + Sbjct: 550 ILGKPYAGPSLSLAATAMDKLLTKRIASAVGVPVVPYQPLNLCFWKRNPELCIQNLIETF 609 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQ-GIKGREIECAVLGND 237 P+ VK A+ GSS+G+ V +E+ + AF +D V VE+ + REIE + +G+ Sbjct: 610 SFPMIVKTAHLGSSIGIFLVRDKEELQEKISEAFLYDTDVFVEESRLGSREIEVSCIGHS 669 Query: 238 NPQASTCG--EIVLTSDFYAYDTKYI--DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 + G E S F Y KY D AK+ ++ E D +R +A + Y+ + Sbjct: 670 SSWYCMAGPNERCGASGFIDYQEKYGFDGIDCAKISFDLQLSQESLDCVRELAERVYRAM 729 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G AR+D FL E ++E+N +PG T S + + + +G ++ I AL + Sbjct: 730 QGKGSARIDFFLDEEGNYWLSEVNPIPGMTAASPFLQAFVHAGWTQEQIVDHFIIDALHK 789 Query: 354 HAADNALK 361 ++ Sbjct: 790 FDKQQTIE 797 >gb|AAF57199.1| (AE003779) CG2118 gene product [Drosophila melanogaster] Length = 684 Score = 234 bits (598), Expect = 9e-61 Identities = 55/333 (16%), Positives = 111/333 (32%), Gaps = 26/333 (7%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQ 86 I + +R ++ I + V + + + H L + + + + Sbjct: 27 ISKILISNRGEIACRVIRTARKLGVRTVAVFSDPDEKSMHTQLADESYRVGEAASSASYL 86 Query: 87 -LIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + I P +G L E + + + F+G A K +K Sbjct: 87 RGERILDIAKRSGAQAIHPG-YGFLSESVEFAELCQREGIIFMGPPSSAIRDMGIKSTSK 145 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 ++ AG+ I ++ + K+G PL +K G G+ + + Sbjct: 146 AIMAAAGVPIINGY--HGDDQSDECLQREADKIGFPLMIKAVRGGGGKGMRIAEKPDDFL 203 Query: 206 IAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A++ A D V++E+ ++ R +E V + A E Sbjct: 204 TALNSARTESEKSFGDSSVLLERYVRSPRHVEVQVFADQYGDAVYLWER--DCSVQRRHQ 261 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEIN 317 K I+E ++ ++ ++ AV+A + +G G V+ L E+ E+N Sbjct: 262 KIIEE-----APAPGLSEDLRRELGEAAVRAAKAVGYVGAGTVEFILDKEDLSFHFMEMN 316 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 T + P +G L+ I +A Sbjct: 317 TRLQVEH----PITEMITGTD---LVEWQIRIA 342 >ref|NP_248224.1| (NC_000909) biotin carboxylase (accC) [Methanococcus jannaschii] sp|Q58626|PYCA_METJA PYRUVATE CARBOXYLASE SUBUNIT A (PYRUVIC CARBOXYLASE A) pir||D64453 biotin carboxylase (EC 6.3.4.14) - Methanococcus jannaschii gb|AAB99232.1| (U67563) biotin carboxylase (accC) [Methanococcus jannaschii] Length = 501 Score = 234 bits (597), Expect = 1e-60 Identities = 60/341 (17%), Positives = 120/341 (34%), Gaps = 24/341 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH-QL 87 + +R ++ + I + + + Y H L A + P + + Sbjct: 4 KVLIANRGEIAIRIIRACWELGIKTVAVYSEADKRSLHATLADEAYCIGPAPAAKSYLNI 63 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 N VD I P +G L E+ ++ A F+G + A A K K++ Sbjct: 64 DAILNVAEKAKVDAIHPG-YGFLAENAEFARAVKKAGFEFIGPNPDAIEAMGSKINAKKI 122 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 ++ AG+ + P + E+ +G P+ VK + G +G+S S+E+ Sbjct: 123 MKKAGVPLIPGSEGAIEDIDE--AIEIAEAIGFPVVVKASAGGGGMGMSVAYSKEELKEV 180 Query: 208 VDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 ++ A D V +E+ ++ R IE +LG+ + G+ K Sbjct: 181 IESARNIAKSAFGDPTVFIEKYLENPRHIEIQLLGDKHGNIIHLGDR--ECSIQRRHQKL 238 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 I+E + E+ +++ A++A + + V+ E+NT Sbjct: 239 IEE-----APSPIMTEELRERMGEAAIKAGKAINYDSAGTVEFLY-ENGNFYFLEMNTRI 292 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALK 361 + Q +G+ + + I E +K Sbjct: 293 QVEHTV----TEQVTGIDLVKAMIK-IAAGEELTLKQEDVK 328 >pir||T44813 biotin carboxylase (EC 6.3.4.14) yngH [imported] - Bacillus subtilis gb|AAF08802.1|AF184956_9 (AF184956) YngH [Bacillus subtilis] Length = 444 Score = 233 bits (595), Expect = 2e-60 Identities = 57/333 (17%), Positives = 116/333 (34%), Gaps = 25/333 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV-PGKHE 84 + +R ++ + I + + + Y D H A + + + Sbjct: 1 MFTKVLIANRGEIAMRIIRTCSRLGIKTVAVYSEADRDAPHTKAATEAYLIGESRVSESY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D I P +G L E+ + N+ F+G A K Sbjct: 61 LNIERIIETAKKANADAIHPG-YGLLSENSRFAERCKQENIVFIGPAPDIIAKMGSKIEA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 ++ + AG+ + P ++ + + S++G P+ +K + G +G+ V +EE Sbjct: 120 RKAMEAAGVPVVPGVSESLGDIQE--ACRTASQIGYPVMLKASAGGGGIGMQLVQNEEAL 177 Query: 205 AIAVD------LAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A + F D + +E+ I+ R IE +L + E Sbjct: 178 RKAYEGNKKRAADFFGDGSMYIEKVIEHARHIEVQLLADHFGHTIHLFER--DCSVQRRH 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E + ++ KI AV+A + +G ++ + P E+N Sbjct: 236 QKVIEE-----APSPFLDDKLRMKIGQTAVKAAKAIGYTNAGTIEFLVDPNQNFYFLEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 T + P + +GL L+ + + +A Sbjct: 291 TRLQVEH----PVTEEITGLD---LVEQQLRIA 316 >gb|AAG45427.1|AF317651_4 (AF317651) pyruvate carboxylase ATP-binding subunit PYCA [Methanosarcina barkeri] Length = 493 Score = 232 bits (593), Expect = 3e-60 Identities = 50/337 (14%), Positives = 112/337 (32%), Gaps = 26/337 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 + +R ++ + + + +S + + A + P + Sbjct: 1 MFKKVLIANRGEIAIRVMRACRELGISTVAVCSEADKNALFAKYADEAYLIGPAPSSQSY 60 Query: 86 -QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + I P +G L E+ + F+G A K Sbjct: 61 LNMEAILAVAKNTGAEAIHPG-YGFLSENPVFAKRCEEEGIVFIGPPSHVIAEMGSKIRA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + L+ AG+ + P A + ++ ++G P+ +K + G +G+ V S +++ Sbjct: 120 RNLMVKAGVPVVPGT--KDAVEDPVEAVKIAEEIGYPVLIKASAGGGGIGMKVVNSSDEF 177 Query: 205 AIAVDLAFE------FDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A+ + D V +E+ + + R IE +L + + Sbjct: 178 ATALSSTRQMAGSAFGDSSVFIEKYVEEPRHIEIQILADGYGNTIYLSDR--ECSIQRRH 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E + PE+ K+ AV+ +T+G V+ + E+N Sbjct: 236 QKLIEE-----APSPIMTPELRAKMGEAAVRVAKTIGYVNAGTVEFLYSK-GNFYFLEVN 289 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 T + +G+ ++ + +A + Sbjct: 290 TRLQVEH----GITEMVTGID---IVREQLRIAWGKK 319 >pir||T06360 methylcrotonoyl-CoA carboxylase (EC 6.4.1.4) biotin carboxylase chain - soybean Length = 731 Score = 232 bits (591), Expect = 6e-60 Identities = 56/334 (16%), Positives = 112/334 (32%), Gaps = 26/334 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HE 84 I + +R ++ + + + Y D H+A A + P + Sbjct: 32 RIEKILVANRGEIACRITRTARRLGIQTVAVYSDADRDSLHVATADEAIRIGPPPARLSY 91 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + I P +G L E + + L F+G A DK + Sbjct: 92 LNGASIVDAAIRSGAQAIHPG-YGFLSESADFAKLCEESGLTFIGPPASAIRDMGDKSAS 150 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 KR++ AG+ + P + + ++G P+ +KP + G G+ V + +++ Sbjct: 151 KRIMGAAGVPLVPGYHGYDQDIEKMKLE--ADRIGYPVLIKPTHGGGGKGMRIVHTPDEF 208 Query: 205 AIAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + A + +++E+ I + R IE + G+ + E Sbjct: 209 VESFLAAQREAAASFGVNTILLEKYITRPRHIEVQIFGDKHGNVLHLYER--DCSVQRRH 266 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTP-ENEVVINEI 316 K I+E I+ + ++ AV A + + V+ + +E E+ Sbjct: 267 QKIIEE-----APAPNISADFRAQLGVAAVSAAKAVNYYNAGTVEFIVDTVSDEFYFMEM 321 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 NT + P G L+ I +A Sbjct: 322 NTRLQVEH----PVTEMIVGQD---LVEWQILVA 348 >ref|NP_283408.1| (NC_003116) putative acetyl-CoA carboxylase biotin carboxylase component [Neisseria meningitidis Z2491] pir||H81978 probable acetyl-CoA carboxylase (EC 6.4.1.2) biotin carboxylase chain NMA0596 [similarity] - Neisseria meningitidis (group A strain Z2491) emb|CAB83886.1| (AL162753) putative acetyl-CoA carboxylase biotin carboxylase component [Neisseria meningitidis Z2491] Length = 453 Score = 231 bits (589), Expect = 1e-59 Identities = 51/343 (14%), Positives = 110/343 (31%), Gaps = 22/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 + + +R ++ L + + ++ + + D H+ L + + + Sbjct: 1 MLKKVLIANRGEIALRVLRACREMGIATVAVHSEADKDSLHVKLADESVCIGPAASAQSY 60 Query: 86 -QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + D + P +G L E+ + + F+G DK Sbjct: 61 LNVPAIIAAAEVSCADAVHPG-YGFLAENADFAEQVEQSGFTFIGPKPDTIRLMGDKVSA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEE-- 202 K + AG+ P + ++ K+G P+ +K + G G+ V +E Sbjct: 120 KHAMIAAGVPCVPGSDGALPDDGE-EILKIADKIGYPVIIKASGGGGGRGMRVVEKKEDL 178 Query: 203 ----QYAIAVDLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + A A + V +E+ ++ R +E V+ +++ A E Sbjct: 179 LQSVEMTKAEAGAAFGNPMVYMERYLQRPRHVEIQVIADEHGNAVYLAER--DCSLQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E I + KI A + +G G + + E E+N Sbjct: 237 QKVIEE-----APAPFITEKERAKIGKACADACKRIGYRGAGTFEFLY-EDGEFFFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P +G+ R+ ++ + Sbjct: 291 TRVQVEH----PVTELITGVDIVQEQLRIAAGLPLQYKQKDIQ 329 >ref|NP_102581.1| (NC_002678) propionyl-CoA carboxylase alpha chain precursor [Mesorhizobium loti] dbj|BAB48367.1| (AP002996) propionyl-CoA carboxylase alpha chain precursor [Mesorhizobium loti] Length = 670 Score = 230 bits (587), Expect = 1e-59 Identities = 52/333 (15%), Positives = 111/333 (32%), Gaps = 25/333 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 + +R ++ I + ++ + Y D H+ + A + P + Sbjct: 1 MFTKILIANRGEIACRVIKTARKMGIATVAVYSDADRDAVHVEMADEAVHIGPSPAAQSY 60 Query: 86 QL-IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + P +G L E + L + F+G A A DK + Sbjct: 61 LVPEKIIAACKETGAQAVHPG-YGFLSERAAFCEALEKEGIVFIGPKPKAIKAMGDKIES 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K+ A ++ P N + ++ ++G P+ +K + G G+ ++ + Sbjct: 120 KKFANAAKVSTVPGWLGVIENADH--AEKIAGEIGYPVMIKASAGGGGKGMRIAWNQSEV 177 Query: 205 AIAVDLAF------EFDHKVIVEQG-IKGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 D A D +V +E+ + R IE VL + + A GE + Sbjct: 178 RDGFDRARSEAKSSFGDDRVFIEKFVVDPRHIEIQVLADAHGNALYLGER--ECSIQRRN 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K A+ + + + +V + + V+ + + E+N Sbjct: 236 QKV-----AEEAPSPFLDAKTRKAMGEQSVALARAVDYQSAGTVEFIVDKDKNFYFLEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 T + P +G+ L+ ++I +A Sbjct: 291 TRLQVEH----PVTELVTGID---LVEQMIRVA 316 >ref|NP_277017.1| (NC_000916) biotin carboxylase [Methanothermobacter thermautotrophicus] sp|O27939|PYCA_METTH PYRUVATE CARBOXYLASE SUBUNIT A (PYRUVIC CARBOXYLASE A) pir||A69123 biotin carboxylase - Methanobacterium thermoautotrophicum (strain Delta H) gb|AAB86377.1| (AE000942) biotin carboxylase [Methanothermobacter thermautotrophicus] Length = 491 Score = 230 bits (586), Expect = 2e-59 Identities = 52/342 (15%), Positives = 119/342 (34%), Gaps = 23/342 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA-QVPGKHE 84 + +R ++ + + + + + Y + A + P + Sbjct: 1 MFSKILVANRGEIAIRVMRACRELGIKSVAVYSEADKNALFTRYADEAYEIGKPAPSQSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 ++ + I P +G L E+ L + +G A DK + Sbjct: 61 LRIDRILEVAEKAGAEAIHPG-YGFLAENPRLGEECEKQGIKLIGPKGSVIEAMGDKITS 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K+L++ AG+ + P ++ A + +G P+ +K + G +G+ V E++ Sbjct: 120 KKLMKKAGVPVIPGTDQGVSDPDE--AARIADSIGYPVIIKASAGGGGIGMRAVYEEDEL 177 Query: 205 AIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A++ + D V +E+ ++ R IE V+ +++ + Sbjct: 178 IRAMESTQSVAASAFGDPTVYIEKYLERPRHIEFQVMADESGNVIHLADR--ECSIQRRH 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E + PE+ +++ + AV+A + +G V+ + + E+N Sbjct: 236 QKLIEE-----APSPIMTPELRERMGSAAVKAAEYIGYENAGTVEFLYS-NGDFYFLEMN 289 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 T + P +G+ R+ R + Sbjct: 290 TRIQVEH----PITEVITGVDLVKEQIRVASGEELRFTQKDI 327 >ref|NP_274857.1| (NC_003112) acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis MC58] pir||F81033 acetyl-CoA carboxylase, biotin carboxylase NMB1861 [imported] - Neisseria meningitidis (group B strain MD58) gb|AAF42195.1| (AE002536) acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis MC58] Length = 453 Score = 229 bits (585), Expect = 2e-59 Identities = 51/343 (14%), Positives = 110/343 (31%), Gaps = 22/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 + + +R ++ L + + ++ + + D H+ L + + + Sbjct: 1 MLKKVLIANRGEIALRVLRACREMGIATVAVHSEADKDSLHVKLADESVCIGPAASAQSY 60 Query: 86 -QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + D + P +G L E+ + + F+G DK Sbjct: 61 LNVPAIIAAAEVSCADAVHPG-YGFLAENADFAEQVEQSGFTFIGPKPDTIRLMGDKVSA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEE-- 202 K + AG+ P + ++ K+G P+ +K + G G+ V +E Sbjct: 120 KHAMIAAGVPCVPGSDGALPDDGE-EILKIADKVGYPVIIKASGGGGGRGMRVVEKKEDL 178 Query: 203 ----QYAIAVDLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + A A + V +E+ ++ R +E V+ +++ A E Sbjct: 179 LQSVEMTKAEAGAAFGNPMVYMERYLQRPRHVEIQVIADEHGNAIYLAER--DCSLQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E I + KI A + +G G + + E E+N Sbjct: 237 QKVIEE-----APAPFITEKERAKIGNACADACKRIGYRGAGTFEFLY-EDGEFFFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P +G+ R+ ++ + Sbjct: 291 TRVQVEH----PVTELITGVDIVQEQLRIAAGLPLQYKQKDIQ 329 >gb|AAH06915.1|AAH06915 (BC006915) Similar to Propionyl Coenzyme A carboxylase, alpha polypeptide [Mus musculus] Length = 724 Score = 228 bits (582), Expect = 6e-59 Identities = 53/338 (15%), Positives = 111/338 (32%), Gaps = 23/338 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH-QL 87 + +R ++ I + + + + H+ + A + P + + Sbjct: 61 KILIANRGEIACRVIKTCKKMGIKTVAIHSDVDASSVHVKMADEAVCVGPAPTSKSYLNM 120 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + P +G L E+ L ++ F+G D A A DK +K L Sbjct: 121 DAIMEAIKKTRAQAVHPG-YGFLSENKEFAKRLAAEDVTFIGPDTHAIQAMGDKIESKLL 179 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + A +N P + + ++G P+ +K + G G+ +E+ Sbjct: 180 AKRAKVNTIPGFDGVVKDADE--AVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDG 237 Query: 208 VDLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 + + D ++++E+ I R IE VLG+ + A E + K Sbjct: 238 FRFSSQEAASSFGDDRLLIEKFIDNPRHIEIQVLGDKHGNALWLNER--ECSIQRRNQKV 295 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E + + PE + AV + + + V+ + + E+NT Sbjct: 296 VEEAPSIF-----LDPETRQAMGEQAVALAKAVKYSSAGTVEFLVDSQKNFYFLEMNTRL 350 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 + P +GL + L+ Sbjct: 351 QVEH----PVTECITGLDLVQEMI-LVAKGYPLRHKQE 383 >ref|NP_300241.1| (NC_002491) biotin carboxylase [Chlamydophila pneumoniae J138] ref|NP_445129.1| (NC_002179) acetyl-coenzyme A carboxylase, biotin carboxylase [Chlamydophila pneumoniae AR39] pir||G81560 acetyl-coenzyme A carboxylase, biotin carboxylase CP0586 [imported] - Chlamydophila pneumoniae (strain AR39) gb|AAF38404.1| (AE002217) acetyl-coenzyme A carboxylase, biotin carboxylase [Chlamydophila pneumoniae AR39] dbj|BAA98392.1| (AP002545) biotin carboxylase [Chlamydophila pneumoniae J138] Length = 454 Score = 228 bits (581), Expect = 8e-59 Identities = 61/342 (17%), Positives = 120/342 (34%), Gaps = 28/342 (8%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ + I +S + Y L + H+ L A + + + I Sbjct: 3 KVLIANRGEIAVRIIRACHDLGLSTVAVYSLADQEALHVLLADEAICIGEPQAAKSYLKI 62 Query: 89 -DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + + D + P +G L E+ + + L F+G + A DK K L Sbjct: 63 SNILAACEITGADAVHPG-YGFLSENANFASICESCGLTFIGPSSESIAMMGDKIAAKSL 121 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + + P + ++ K+G P+ +K G G+ V ++++ A Sbjct: 122 AKKIKCPVIPGSEGIIEDESEG--LKIAEKIGFPIVIKAVAGGGGRGIRIVKEKDEFYRA 179 Query: 208 VDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A + V +E+ I+ R +E V+G+ + GE K Sbjct: 180 FSAARAEAEAGFNNPNVYIEKFIENPRHLEIQVIGDTHGNYVHLGER--DCTIQRRRQKL 237 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 I+E + EI K+ IAV ++ G + V+ L + + E+NT Sbjct: 238 IEE-----TPSPILNAEIRVKVGKIAVDLARSAGYFSVGTVEFLLDKDKKFYFMEMNTRI 292 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELALERH---AADNA 359 + + +G+ L+ I +A+ N Sbjct: 293 QVEHT----ITEEVTGID---LVKEQIHVAMGNKLPWKQKNI 327 >ref|NP_252890.1| (NC_002516) D-alanine-D-alanine ligase A [Pseudomonas aeruginosa] pir||E83121 D-alanine-D-alanine ligase A PA4201 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG07588.1|AE004836_7 (AE004836) D-alanine-D-alanine ligase A [Pseudomonas aeruginosa] Length = 346 Score = 227 bits (580), Expect = 9e-59 Identities = 113/355 (31%), Positives = 180/355 (49%), Gaps = 20/355 (5%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +KL+V ++FGG S E +VS+ S ++ A+ + V+ + G + Sbjct: 4 DKLKVAVLFGGSSEERDVSIASGAQVIQALRSAGHQVLAVD-TASGLLG----AEEERRL 58 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 + P + SLA + + L + L VDV F +HG GEDG+LQ +L Sbjct: 59 LASKVKEVPPDSDSLAIIRSGKQSLL----SAGELAGVDVFFLALHGGTGEDGTLQALLD 114 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 + GS LASA MDKDV KRL AG+ A ++ + EV +LG P Sbjct: 115 AGGFAYTGSGHLASAMAMDKDVAKRLFLAAGVETASWLMAPASEE------EVREQLGFP 168 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 L VKP +QGS+VG+S V S+ + A++LA + +V++E+ + GRE+ VL + A Sbjct: 169 LVVKPNSQGSTVGLSIVHSQAELQPAIELAGRYGDEVMLERFVAGREVTVGVLDDQ---A 225 Query: 242 STCGEIVLTSDF-YAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 GEI+L + Y+ KY +V PA + P I + + +A++ ++ L +G +R Sbjct: 226 LPVGEILLGGQEVFDYEHKYQAGAVREVF-PADLPPAIAAEAQRLALKVHRALKLSGYSR 284 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 D L + + E+NTLPG T S+ P+ A+G+G+ +L R+ L +ER Sbjct: 285 TDFRLDEQGRLWCLEVNTLPGMTATSLLPQAAAAAGIGFAELCERICRLGIERCK 339 >ref|NP_219627.1| (NC_000117) Biotin Carboxylase [Chlamydia trachomatis] pir||H71553 probable biotin carboxylase - Chlamydia trachomatis (serotype D, strain UW3/Cx) gb|AAC67715.1| (AE001286) Biotin Carboxylase [Chlamydia trachomatis] Length = 457 Score = 227 bits (580), Expect = 1e-58 Identities = 58/344 (16%), Positives = 120/344 (34%), Gaps = 25/344 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ + I ++ + Y + + H+ L A + + + I Sbjct: 3 KVLIANRGEIAIRIIRACHDLGLATVAVYSMADQEALHVLLADEAVCIGEAQAAKSYLKI 62 Query: 89 D-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + VD + P +G L E+ + + L F+G + A DK K+L Sbjct: 63 ANILAACEITGVDAVHPG-YGFLSENANFASICESCGLTFIGPSAESIATMGDKVAAKQL 121 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + + P + + K+G P+ +K G G+ V ++++ A Sbjct: 122 AKKIKCPVIPGSEGVVKDEVEGI--RIAEKIGFPIVIKAVAGGGGRGIRIVREKDEFYRA 179 Query: 208 VDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A + V +E+ I+ R +E V+G+ + GE K Sbjct: 180 FTAARAEAEAGFNNPDVYIEKFIENPRHLEVQVIGDKHGNYVYLGER--DCTVQRRRQKL 237 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 I+E + PE+ K+ +AV ++ G + V+ L E E+NT Sbjct: 238 IEE-----TPSPILTPEMRAKVGKVAVDLARSAGYFSVGTVEFLLDKEKRFYFMEMNTRI 292 Query: 321 GFTNISMYPKLWQASGLGYTDLITRL-IELALERHAADNALKTT 363 + + +G+ L ++ + + +K Sbjct: 293 QVEHT----ITEEVTGIDL--LKAQISVAKGEKLPWKQKNIKFK 330 >ref|NP_253535.1| (NC_002516) biotin carboxylase [Pseudomonas aeruginosa] sp|P37798|ACCC_PSEAE BIOTIN CARBOXYLASE (A SUBUNIT OF ACETYL-COA CARBOXYLASE (ACC) pir||B49342 acetyl-CoA carboxylase (EC 6.4.1.2), biotin carboxylase - Pseudomonas aeruginosa pir||H83039 biotin carboxylase PA4848 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAA16041.1| (L14612) biotin carboxylase [Pseudomonas aeruginosa] gb|AAG08233.1|AE004898_4 (AE004898) biotin carboxylase [Pseudomonas aeruginosa] Length = 449 Score = 227 bits (579), Expect = 1e-58 Identities = 54/326 (16%), Positives = 105/326 (31%), Gaps = 22/326 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ L + + + + + + H++L + + P + I Sbjct: 4 KVLIANRGEIALRILRACKELGIKTVAVHSTADRELMHLSLADESVCIGPAPATQSYLQI 63 Query: 89 D-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + I P +G L E+ + + FVG DK K Sbjct: 64 PAIIAAAEVTGATAIHPG-YGFLAENADFAEQIERSGFTFVGPTAEVIRLMGDKVSAKDA 122 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 ++ AG+ P + + ++G P+ +K A G G+ V E + + Sbjct: 123 MKRAGVPTVPGSDGPLPEDEETAL-AIAREVGYPVIIKAAGGGGGRGMRVVYDESELIKS 181 Query: 208 VDL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 L A + V +E+ + R +E VL + A G+ K Sbjct: 182 AKLTRTEAGAAFGNPMVYLEKFLTNPRHVEVQVLSDGQGNAIHLGDR--DCSLQRRHQKV 239 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 I+E I + ++ A VQA +G G + E+NT Sbjct: 240 IEE-----APAPGIDEKARQEVFARCVQACIEIGYRGAGTFEFLY-ENGRFYFIEMNTRV 293 Query: 321 GFTNISMYPKLWQASGLGYTDLITRL 346 + P +G+ + R+ Sbjct: 294 QVEH----PVSEMVTGVDIVKEMLRI 315 >gb|AAL02364.1| (AY046947) propionyl CoA-carboxylase alpha-subunit [Mus musculus] Length = 724 Score = 227 bits (579), Expect = 1e-58 Identities = 53/338 (15%), Positives = 111/338 (32%), Gaps = 23/338 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH-QL 87 + +R ++ I + + + + H+ + A + P + + Sbjct: 61 KILIANRGEIACRVIKTCKKMGIKTVAIHSDVDASSVHVKMADEAVCVGPAPTSKSYLNM 120 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + P +G L E+ L ++ F+G D A A DK +K L Sbjct: 121 DAIMEAIKKTRAQAVHPG-YGFLSENKEFAKRLAAEDVTFIGPDTHAIQAMGDKIESKLL 179 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + A +N P + + ++G P+ +K + G G+ +E+ Sbjct: 180 AKRAKVNTIPGFDGVVKDADE--AVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDG 237 Query: 208 VDLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 + + D ++++E+ I R IE VLG+ + A E + K Sbjct: 238 FRFSSQEAASSFGDDRLLIEKFIDNPRHIEIQVLGDKHGNALWLNER--ECSIQRRNQKV 295 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E + + PE + AV + + + V+ + + E+NT Sbjct: 296 VEEAPSIF-----LDPETRQAMGEQAVALAKAVKYSSAGTVEFLVDSQKNFYFLEMNTRL 350 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 + P +GL + L+ Sbjct: 351 QVEH----PVTECITGLDLVQEMI-LVAKGYPLRHKQE 383 >ref|NP_224391.1| (NC_000922) Biotin Carboxylase [Chlamydophila pneumoniae CWL029] pir||E72110 biotin carboxylase - Chlamydophila pneumoniae (strain CWL029) gb|AAD18335.1| (AE001604) Biotin Carboxylase [Chlamydophila pneumoniae CWL029] Length = 454 Score = 227 bits (578), Expect = 2e-58 Identities = 60/342 (17%), Positives = 120/342 (34%), Gaps = 28/342 (8%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ + I +S + Y L + H+ L A + + + I Sbjct: 3 KVLIANRGEIAVRIIRACHDLGLSTVAVYSLADQEALHVLLADEAICIGEPQAAKSYLKI 62 Query: 89 -DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + + D + P +G L E+ + + L F+G + A DK K L Sbjct: 63 SNILAACEITGADAVHPG-YGFLSENANFASICESCGLTFIGPSSESIAMMGDKIAAKSL 121 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + + P + ++ K+G P+ +K G G+ V ++++ A Sbjct: 122 AKKIKCPVIPGSEGIIEDESEG--LKIAEKIGFPIVIKAVAGGGGRGIRIVKEKDEFYRA 179 Query: 208 VDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A + V +E+ I+ R +E V+G+ + GE K Sbjct: 180 FSAARAEAEAGFNNPNVYIEKFIENPRHLEIQVIGDTHGNYVHLGER--DCTIQRRRQKL 237 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 I+E + EI K+ +AV ++ G + V+ L + + E+NT Sbjct: 238 IEE-----TPSPILNAEIRVKVGKVAVDLARSAGYFSVGTVEFLLDKDKKFYFMEMNTRI 292 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELALERH---AADNA 359 + + +G+ L+ I +A+ N Sbjct: 293 QVEHT----ITEEVTGID---LVKEQIHVAMGNKLPWKQKNI 327 >ref|NP_372050.1| (NC_002758) acetyl-CoA carboxylase [Staphylococcus aureus subsp. aureus Mu50] ref|NP_374640.1| (NC_002745) acetyl-CoA carboxylase (biotin carboxylase subunit) accC [Staphylococcus aureus subsp. aureus N315] dbj|BAB42619.1| (AP003134) acetyl-CoA carboxylase accC [Staphylococcus aureus subsp. aureus N315] dbj|BAB57688.1| (AP003362) acetyl-CoA carboxylase [Staphylococcus aureus subsp. aureus Mu50] Length = 451 Score = 227 bits (578), Expect = 2e-58 Identities = 50/326 (15%), Positives = 104/326 (31%), Gaps = 23/326 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ + I + + Y D H + A + K + I Sbjct: 3 KVLIANRGEIAVRIIRACRDLGIQTVAIYSEGDKDALHTQIADEAYCVGPTLSKDSYLNI 62 Query: 89 D-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + D + P +G L E+ + L F+G + KDV K Sbjct: 63 PNILSIATSTGCDGVHPG-YGFLAENADFAELCEACQLKFIGPSYQSIQKMGIKDVAKAE 121 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + A + + P + ++ K+G P+ +K G G+ E++ Sbjct: 122 MIKANVPVVPGSDGLMKDVSE--AKKIAKKIGYPVIIKATAGGGGKGIRVARDEKELETG 179 Query: 208 V------DLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 + + +E+ I+ R IE ++G+ GE K Sbjct: 180 FRMTEQEAQTAFGNGGLYMEKFIENFRHIEIQIVGDSYGNVIHLGER--DCTIQRRMQKL 237 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEINTL 319 ++E + E ++ AV+A + + ++ +N+ E+NT Sbjct: 238 VEE-----APSPILDDETRREMGNAAVRAAKAVNYENAGTIEFIYDLNDNKFYFMEMNTR 292 Query: 320 PGFTNISMYPKLWQASGLGYTDLITR 345 + P +G+ L + Sbjct: 293 IQVEH----PVTEMVTGIDLVKLQLQ 314 >gb|AAF09095.1|AF068759_1 (AF068759) pyruvate carboxylase [Lactococcus lactis subsp. lactis] Length = 1137 Score = 227 bits (578), Expect = 2e-58 Identities = 57/337 (16%), Positives = 109/337 (31%), Gaps = 26/337 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ--VPGKHEHQ 86 + +R ++ + + +S + Y + H + + Q P Sbjct: 3 KLLVANRGEIAVRVFRACNELGLSTVAVYAREDEYSVHRFKADESYLIGQGKKPIDAYLD 62 Query: 87 LIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKR 146 + D D I P +G L E+ +R A L FVG ++ DK K Sbjct: 63 IDDIIRVALESGADAIHPG-YGLLSENLEFATKVRAAGLVFVGPELHHLDIFGDKIKAKA 121 Query: 147 LLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAI 206 +A P I T E G P+ +K A G G+ ++ + Sbjct: 122 AADEA---QVPGIPGTNGAVDIDGALEFAQTYGYPVMIKAALGGGGRGMRVARNDAEMHD 178 Query: 207 AVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTK 259 A ++ VE+ I+ + IE +LG+ + E + K Sbjct: 179 GYARAKSEAIGAFGSGEIYVEKYIENPKHIEVQILGDSHGNIVHLHER--DCSVQRRNQK 236 Query: 260 YIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTL 319 I+ + ++PE ++I AV+ + +G V+ + +++ E+N Sbjct: 237 VIE-----IAPAVGLSPEFRNEICEAAVKLCKNVGYVNAGTVEFLV-KDDKFYFIEVNPR 290 Query: 320 PGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 + +G+ LI + H Sbjct: 291 VQVEHT----ITELITGVDIVQ-AQILIAQGKDLHTE 322 >dbj|BAB16297.1| (AB039884) acetyl-CoA carboxylase biotin carboxylase subunit [Myxococcus xanthus] Length = 573 Score = 227 bits (578), Expect = 2e-58 Identities = 62/333 (18%), Positives = 117/333 (34%), Gaps = 25/333 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 + +R ++ + I + S + + H+ A ++ P K + Sbjct: 3 RFKKVLIANRGEIAVRVIRTCQRLGYSTVAVFSEADRGAPHVLAADEAVAIGPSPAKESY 62 Query: 86 QLID-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 +I + I P +G L E+ R A L F+G + A +K Sbjct: 63 LVIGKILEAAKTSGAEAIHPG-YGFLSENADFARACRDAGLVFIGPEAEAITLMGNKRQA 121 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + AG+ P + + ++ ++G PL VK A G G+ V Q Sbjct: 122 NVRMIAAGVPCIPGYEASDLDDEALAVE--GERIGFPLMVKAAAGGGGRGMRLVHEASQL 179 Query: 205 AIAVDLAF------EFDHKVIVEQG-IKGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A+ A ++I+E+ I R +E V + + GE Sbjct: 180 RAALRAARSEATNAFGSGELILEKAVIDARHVEVQVFADTHGNVVHLGER--DCSVQRRH 237 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E A++P + ++ +AV A + +G G ++ L P + E+N Sbjct: 238 QKIVEES-----PSPAVSPALRARMGEVAVAAARAIGYRGAGTIEFLLAPSGDFYFMEMN 292 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 T + P +GL L+ + +A Sbjct: 293 TRLQVEH----PVTELITGLD---LVEWQLRVA 318 >ref|NP_470397.1| (NC_003212) highly similar to pyruvate carboxylase [Listeria innocua] emb|CAC96291.1| (AL596167) highly similar to pyruvate carboxylase [Listeria innocua] Length = 1146 Score = 226 bits (576), Expect = 3e-58 Identities = 56/340 (16%), Positives = 103/340 (29%), Gaps = 25/340 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSL--AQVPGKH 83 I + +R ++ + + + + + Y H A + + P Sbjct: 3 RIKKVLVANRGEIAIRVMRACTELKIKTVAIYSQEDTGSFHRYKSDEAYLVGAGKKPIDA 62 Query: 84 EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + + D I P +G L E+ + FVG DK Sbjct: 63 YLDIENIIEIAKESGADAIHPG-YGFLSENIEFARRCEQEGIIFVGPKSKHLDMFGDKIK 121 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 K A + + P A E K G PL +K + G G+ V S+E Sbjct: 122 AKEQALLADIPVIPGSDGPVAGIKE--VEEFGEKNGYPLMIKASLGGGGRGMRVVESKEH 179 Query: 204 YAIAVDL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 + + A + +V VE+ + + IE +LG+ + E Sbjct: 180 VKESFERASSEAKAAFGNDEVYVEKCVMNPKHIEVQILGDTHGNIVHLFER--DCSIQRR 237 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEI 316 K ++ V AI E+ ++I AV+ + + V+ + +N E+ Sbjct: 238 HQKVVE-----VAPCNAITSELRNRICDAAVKLMKNVDYINAGTVEFLVEGDN-FYFIEV 291 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 N + +G+ I H Sbjct: 292 NPRVQVEHT----ITEMITGIDIVQ-SQLFIADGYALHDQ 326 >ref|NP_036876.1| (NM_012744) pyruvate carboxylase [Rattus norvegicus] sp|P52873|PYC_RAT Pyruvate carboxylase, mitochondrial precursor (Pyruvic carboxylase) (PCB) gb|AAA96256.1| (U32314) pyruvate carboxylase [Rattus norvegicus] Length = 1178 Score = 226 bits (576), Expect = 3e-58 Identities = 48/324 (14%), Positives = 100/324 (30%), Gaps = 23/324 (7%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSL--AQVPGKHE 84 I + +R ++ + + + + Y H A + P + Sbjct: 37 IKKVMVANRGEIAIRVFRACTELGIRTVAVYSEQDTGQMHRQKADEAYLIGRGLAPVQAY 96 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D VD + P +G L E + A + F+G DK Sbjct: 97 LHIPDIIKVAKENGVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEA 155 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + + AG+ + P E + G P+ K A G G+ V S E+ Sbjct: 156 RAIAIAAGVPVVPGT--NSPINSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEEL 213 Query: 205 AIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A + + VE+ I+ R IE +LG+ E Sbjct: 214 EENYTRAYPEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYER--DCSIQRRH 271 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ + + P++ ++ + +V+ + +G V+ + + E+N Sbjct: 272 QKVVE-----IAPATHLDPQLRSRLTSDSVKLAKQVGYENAGTVEFLVDKHGKHYFIEVN 326 Query: 318 TLPGFTNISMYPKLWQASGLGYTD 341 + + + + + Sbjct: 327 SRLQVEHTV----TEEITDVDLVH 346 >gb|AAB31500.1| (S72370) pyruvate carboxylase; pyruvate:carbon dioxide ligase [Homo sapiens] Length = 1178 Score = 226 bits (576), Expect = 3e-58 Identities = 54/336 (16%), Positives = 109/336 (32%), Gaps = 26/336 (7%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSL--AQVPGKHE 84 I + +R ++ + + + + Y H A + P + Sbjct: 37 IKKVMVANRGEIAIRVFRACTELGIRTVAIYSEQDTGQMHRQKADEAYLIGRGLAPVQAY 96 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D VD + P +G L E + A + F+G DK Sbjct: 97 LHIPDIIKVAKENNVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEA 155 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + + AG+ + P E + G P+ K A G G+ V S E+ Sbjct: 156 RAIAIAAGVPVVPGTDAPIT--SLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEEL 213 Query: 205 AI----AVDLAF--EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A+ + + VE+ I+ R IE +LG+ E Sbjct: 214 EENYTRAYSEAWPAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYER--DCSIQRRH 271 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ + A + P++ ++ + +V+ + +G V+ + + E+N Sbjct: 272 QKVVE-----IAPAAHLDPQLRTRLTSDSVKLAKQVGYENAGTVEFLVDRHGKHYFIEVN 326 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 + + + + + L+ I +A R Sbjct: 327 SRLQVEHTV----TEEITDVD---LVHAQIHVAEGR 355 >pir||S68252 pyruvate carboxylase (EC 6.4.1.1) precursor - rat pir||JC4391 pyruvate carboxylase (EC 6.4.1.1) precursor - rat gb|AAC52668.1| (U36585) pyruvate carboxylase [Rattus norvegicus] Length = 1178 Score = 226 bits (576), Expect = 3e-58 Identities = 48/324 (14%), Positives = 100/324 (30%), Gaps = 23/324 (7%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSL--AQVPGKHE 84 I + +R ++ + + + + Y H A + P + Sbjct: 37 IKKVMVANRGEIAIRVFRACTELGIRTVAVYSEQDTGQMHRQKADEAYLIGRGLAPVQAY 96 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D VD + P +G L E + A + F+G DK Sbjct: 97 LHIPDIIKVAKENGVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEA 155 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + + AG+ + P E + G P+ K A G G+ V S E+ Sbjct: 156 RAIAIAAGVPVVPGT--NSPINSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEEL 213 Query: 205 AIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A + + VE+ I+ R IE +LG+ E Sbjct: 214 EENYTRAYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYER--DCSIQRRH 271 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ + + P++ ++ + +V+ + +G V+ + + E+N Sbjct: 272 QKVVE-----IAPATHLDPQLRSRLTSDSVKLAKQVGYENAGTVEFLVDKHGKHYFIEVN 326 Query: 318 TLPGFTNISMYPKLWQASGLGYTD 341 + + + + + Sbjct: 327 SRLQVEHTV----TEEITDVDLVH 346 >sp|P11498|PYC_HUMAN Pyruvate carboxylase, mitochondrial precursor (Pyruvic carboxylase) (PCB) gb|AAA99537.1| (U04641) pyruvate: carbon-dioxide ligase (ADP-forming) [Homo sapiens] gb|AAH11617.1|AAH11617 (BC011617) pyruvate carboxylase [Homo sapiens] prf||2023166A pyruvate carboxylase [Homo sapiens] Length = 1178 Score = 225 bits (575), Expect = 4e-58 Identities = 53/336 (15%), Positives = 107/336 (31%), Gaps = 26/336 (7%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSL--AQVPGKHE 84 I + +R ++ + + + + Y H A + P + Sbjct: 37 IKKVMVANRGEIAIRVFRACTELGIRTVAIYSEQDTGQMHRQKADEAYLIGRGLAPVQAY 96 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D VD + P +G L E + A + F+G DK Sbjct: 97 LHIPDIIKVAKENNVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEA 155 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + + AG+ + P E + G P+ K A G G+ V S E+ Sbjct: 156 RAIAIAAGVPVVPGTDAPIT--SLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEEL 213 Query: 205 AIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A + + VE+ I+ R IE +LG+ E Sbjct: 214 EENYTRAYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYER--DCSIQRRH 271 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ + A + P++ ++ + +V+ + +G V+ + + E+N Sbjct: 272 QKVVE-----IAPAAHLDPQLRTRLTSDSVKLAKQVGYENAGTVEFLVDRHGKHYFIEVN 326 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 + + + + + L+ I +A R Sbjct: 327 SRLQVEHTV----TEEITDVD---LVHAQIHVAEGR 355 >ref|NP_032823.1| (NM_008797) pyruvate decarboxylase [Mus musculus] sp|Q05920|PYC_MOUSE Pyruvate carboxylase, mitochondrial precursor (Pyruvic carboxylase) (PCB) pir||A47255 pyruvate carboxylase (EC 6.4.1.1) precursor [similarity] - mouse gb|AAA39737.1| (L09192) pyruvate carboxylase [Mus musculus] Length = 1178 Score = 225 bits (574), Expect = 5e-58 Identities = 48/324 (14%), Positives = 100/324 (30%), Gaps = 23/324 (7%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSL--AQVPGKHE 84 I + +R ++ + + + + Y H A + P + Sbjct: 37 IKKVMVANRGEIAIRVFRACTELGIRTVAVYSEQDTGQMHRQKADEAYLIGRGLAPVQAY 96 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D VD + P +G L E + A + F+G DK Sbjct: 97 LHIPDIIKVAKENGVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEA 155 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + + AG+ + P E + G P+ K A G G+ V S E+ Sbjct: 156 RAIAIAAGVPVVPGTD--SPISSLHEAHEFSNTFGFPIIFKAAYGGGGRGMRVVHSYEEL 213 Query: 205 AIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A + + VE+ I+ R IE +LG+ E Sbjct: 214 EENYTRAYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYER--DCSIQRRH 271 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ + + P++ ++ + +V+ + +G V+ + + E+N Sbjct: 272 QKVVE-----IAPATHLDPQLRSRLTSDSVKLAKQVGYENAGTVEFLVDKHGKHYFIEVN 326 Query: 318 TLPGFTNISMYPKLWQASGLGYTD 341 + + + + + Sbjct: 327 SRLQVEHTV----TEEITDVDLVH 346 >pir||A34337 propionyl-CoA carboxylase (EC 6.4.1.3) alpha chain precursor - rat (fragment) Length = 704 Score = 225 bits (574), Expect = 5e-58 Identities = 53/338 (15%), Positives = 111/338 (32%), Gaps = 23/338 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH-QL 87 + +R ++ I + + + + H+ + A + P + + Sbjct: 41 KILIANRGEIACRVIKTCRKMGIRTVAIHSDVDASSVHVKMADEAVCVGPAPTSKSYLNM 100 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + P +G L E+ L ++ F+G D A A DK +K L Sbjct: 101 DAIMEAIKKTGAQAVHPG-YGFLSENKEFAKCLAAEDVTFIGPDTHAIQAMGDKIESKLL 159 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + A +N P + + ++G P+ +K + G G+ +E+ Sbjct: 160 AKRAKVNTIPGFDGVLKDADE--AVRIAREIGYPVMIKASAGGGGKGMRIPWDDEETRDG 217 Query: 208 VDLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 + + D ++++E+ I R IE VLG+ + A E + K Sbjct: 218 FRFSSQEAASSFGDDRLLIEKFIDNPRHIEIQVLGDKHGNALWLNER--ECSIQRRNQKV 275 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E + + PE + AV + + + V+ + + E+NT Sbjct: 276 VEEAPSIF-----LDPETRRAMGEQAVALAKAVKYSSAGTVEFLVDSQKNFYFLEMNTRL 330 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 + P +GL + L+ Sbjct: 331 QVEH----PVTECITGLDLVQEMI-LVAKGYPLRHKQE 363 >ref|NP_464597.1| (NC_003210) highly similar to pyruvate carboxylase [Listeria monocytogenes EGD-e] emb|CAC99150.1| (AL591977) highly similar to pyruvate carboxylase [Listeria monocytogenes] Length = 1146 Score = 225 bits (574), Expect = 6e-58 Identities = 55/340 (16%), Positives = 103/340 (30%), Gaps = 25/340 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSL--AQVPGKH 83 I + +R ++ + + + + + Y H A + + P Sbjct: 3 RIKKVLVANRGEIAIRVMRACTELKIKTVAIYSQEDTGSFHRYKSDEAYLVGAGKKPIDA 62 Query: 84 EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + + D I P +G L E+ + FVG DK Sbjct: 63 YLDIENIIEIAKESGADAIHPG-YGFLSENIEFARRCEQEGIIFVGPKSKHLDMFGDKIK 121 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 K A + + P A E K G PL +K + G G+ V S+E Sbjct: 122 AKEQALLADIPVIPGSNGPVAGIKE--VEEFGEKNGYPLMIKASLGGGGRGMRVVESKEH 179 Query: 204 YAIAVDL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 + + A + +V VE+ + + IE +LG+ + E Sbjct: 180 VKESFERASSEAKAAFGNDEVYVEKCVMNPKHIEVQILGDTHGNIVHLFER--DCSIQRR 237 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEI 316 K ++ V AI E+ ++I AV+ + + V+ + ++ E+ Sbjct: 238 HQKVVE-----VAPCNAITSELRNRICDAAVKLMKNVDYINAGTVEFLVEGDD-FYFIEV 291 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 N + +G+ I H Sbjct: 292 NPRVQVEHT----ITEMITGIDIVQ-SQLFIADGYALHDQ 326 >ref|NP_000273.1| (NM_000282) Propionyl-Coenzyme A carboxylase, alpha polypeptide precursor [Homo sapiens] ref|XP_049016.1| (XM_049016) Propionyl-Coenzyme A carboxylase, alpha polypeptide precursor [Homo sapiens] sp|P05165|PCCA_HUMAN PROPIONYL-COA CARBOXYLASE ALPHA CHAIN, MITOCHONDRIAL PRECURSOR (PCCASE ALPHA SUBUNIT) (PROPANOYL-COA:CARBON DIOXIDE LIGASE ALPHA SUBUNIT) pir||A27883 propionyl-CoA carboxylase (EC 6.4.1.3) alpha chain precursor - human emb|CAA32763.1| (X14608) propionyl-CoA carboxylase [Homo sapiens] gb|AAH00140.1|AAH00140 (BC000140) propionyl Coenzyme A carboxylase, alpha polypeptide [Homo sapiens] Length = 703 Score = 225 bits (573), Expect = 6e-58 Identities = 55/330 (16%), Positives = 114/330 (33%), Gaps = 25/330 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH-QL 87 + +R ++ I + + + + H+ + A + P + + Sbjct: 40 KILVANRGEIACRVIRTCKKMGIKTVAIHSDVDASSVHVKMADEAVCVGPAPTSKSYLNM 99 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + P +G L E+ L ++ F+G D A A DK +K L Sbjct: 100 DAIMEAIKKTRAQAVHPG-YGFLSENKEFARCLAAEDVVFIGPDTHAIQAMGDKIESKLL 158 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + A +N P + + ++G P+ +K + G G+ +E+ Sbjct: 159 AKKAEVNTIPGFDGVVKDAEE--AVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDG 216 Query: 208 VDLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 L+ + D ++++E+ I R IE VLG+ + A E + K Sbjct: 217 FRLSSQEAASSFGDDRLLIEKFIDNPRHIEIQVLGDKHGNALWLNER--ECSIQRRNQKV 274 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E + + E + AV + + + V+ + + E+NT Sbjct: 275 VEEAPSIF-----LDAETRRAMGEQAVALARAVKYSSAGTVEFLVDSKKNFYFLEMNTRL 329 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELA 350 + P +GL L+ +I +A Sbjct: 330 QVEH----PVTECITGLD---LVQEMIRVA 352 >ref|NP_439298.1| (NC_000907) D-alanine--D-alanine ligase (ddlB) [Haemophilus influenzae Rd] sp|P44405|DDL_HAEIN D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||F64185 D-alanine--D-alanine ligase (EC 6.3.2.4) B - Haemophilus influenzae (strain Rd KW20) gb|AAC22795.1| (U32794) D-alanine--D-alanine ligase (ddlB) [Haemophilus influenzae Rd] Length = 306 Score = 225 bits (573), Expect = 6e-58 Identities = 106/349 (30%), Positives = 172/349 (48%), Gaps = 47/349 (13%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 +++ ++ ++ GG SAE EVSL S K +++A+ K ++ + Sbjct: 3 LKQEKIAVLLGGTSAEREVSLNSGKAVLEALLKQGYNAHPIDP----------------- 45 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 E+ + + + F I+HG GEDG++QG+L Sbjct: 46 ----------------------KEYNVANL----KKDGFNRAFNILHGRGGEDGTMQGLL 79 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 LP+ G V+ASA MDK TK L + GL +A +TR + V +KLGL Sbjct: 80 EQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFSELDPQAVVAKLGL 139 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 PL VKP+ +GSSVG++KV + E+ AV+ A +FD+ +++E+ + G E+ VL N Sbjct: 140 PLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKFDNTILIEEWLAGDELTVPVLDNQ--- 196 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 IV +FY Y+ KYI D + PA + PE + + +AY +GC G +R Sbjct: 197 VLPAIRIVPEGEFYDYEAKYI-SDNTQYFCPAGLTPEREQALSTLVKRAYDAVGCRGWSR 255 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 +DV + + E+NT PG T+ S++PK G+ + L+ +++EL Sbjct: 256 IDVMCDAKGNFRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILEL 304 >ref|NP_357130.1| (NC_003063) AGR_L_2704p [Agrobacterium tumefaciens] [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAK89915.1| (AE008334) AGR_L_2704p [Agrobacterium tumefaciens str. C58 (Cereon)] Length = 709 Score = 225 bits (573), Expect = 6e-58 Identities = 61/340 (17%), Positives = 115/340 (32%), Gaps = 26/340 (7%) Query: 19 VSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ 78 S A + +R ++ I + + Y D H+AL A ++ Sbjct: 40 YSGCEATMFSKILIANRGEIACRIIRTAASMGIRTVAVYSDADRDAMHVALADEAIAIGP 99 Query: 79 VPGKHEH-QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAA 137 P + + + I P +G L E+ A L F+G A A Sbjct: 100 APARASYLDGEKIIAAAKASGAEAIHPG-YGFLSENAGFAEACASAGLVFIGPPPEAIRA 158 Query: 138 CMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSK 197 K K L+ AG+ I P + A K+G P+ +K + G G+ Sbjct: 159 MGGKSEAKALMATAGVPIVPGY--HGDEQAEKRLASEADKIGYPVLLKASAGGGGKGMRV 216 Query: 198 VTSEEQYAIAV------DLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLT 250 V + +A + LA + ++++E+ ++ R +E V + + + E Sbjct: 217 VRQKHDFAAELAGAKREALAAFGNDRMLIEKYLERPRHVEVQVFADGHGNCVSLFER--D 274 Query: 251 SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENE 310 K I+E + ++ ++ A A + + G ++ L P Sbjct: 275 CSIQRRHQKVIEE-----APAPGLPDDLRQRMYDAATAAARAIDYRGAGTIEFLLDPSG- 328 Query: 311 VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 E+NT + P +GL L+ + +A Sbjct: 329 FYFMEMNTRLQVEH----PVTEYITGLD---LVEWQLRVA 361 >ref|NP_520908.1| (NC_003295) PROBABLE BIOTIN CARBOXYLASE PROTEIN [Ralstonia solanacearum] emb|CAD16494.1| (AL646071) PROBABLE BIOTIN CARBOXYLASE PROTEIN [Ralstonia solanacearum] Length = 456 Score = 224 bits (572), Expect = 8e-58 Identities = 55/340 (16%), Positives = 107/340 (31%), Gaps = 22/340 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKHEHQL 87 + +R ++ L + + Y + ++ L A + P + Sbjct: 4 KILIANRGEIALRIQRACRELGIKTVVVYSEADKEAKYVKLADEAVCIGPAPSPLSYLNM 63 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + + I P +G L E+ + + F+G DK K+ Sbjct: 64 PAIISAAEVTDAQAIHPG-YGFLSENADFAERVEQSGFTFIGPTPDCIRLMGDKVSAKQA 122 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + +G+ P + K+G P+ +K A G G+ V +E A Sbjct: 123 MIKSGVPCVPGSEGALPDDPK-EILATARKVGYPVIIKAAGGGGGRGMRVVHTEAALINA 181 Query: 208 V----DLA--FEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 V + A + +V +E+ ++ R +E VL + + A GE K Sbjct: 182 VNMTREEAGRAFGNPEVYMEKFLENPRHVEIQVLADQHRNAIWLGER--DCSMQRRHQKV 239 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 I+E I + ++I A + +G G + E E+NT Sbjct: 240 IEE-----APAPHIPRRLIERIGDRCADACKKIGYRGAGTFEFLY-ENGEFYFIEMNTRV 293 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + P +G+ R+ R + + Sbjct: 294 QVEH----PVTEMITGIDIVQEQIRVAANEKLRFRQKDVV 329 >ref|NP_000911.1| (NM_000920) pyruvate carboxylase precursor [Homo sapiens] ref|NP_071504.1| (NM_022172) pyruvate carboxylase precursor [Homo sapiens] pir||G01933 pyruvate carboxylase (EC 6.4.1.1) precursor - human pir||JC2460 pyruvate carboxylase (EC 6.4.1.1) precursor - human gb|AAA82937.1| (U30891) pyruvate carboxylase precursor [Homo sapiens] Length = 1178 Score = 224 bits (572), Expect = 8e-58 Identities = 49/324 (15%), Positives = 101/324 (31%), Gaps = 23/324 (7%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSL--AQVPGKHE 84 I + +R ++ + + + + Y H A + P + Sbjct: 37 IKKVMVANRGEIAIRVFRACTELGIRTVAIYSEQDTGQMHRQKADEAYLIGRGLAPVQAY 96 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D VD + P +G L E + A + F+G DK Sbjct: 97 LHIPDIIKVAKENNVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEA 155 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + + AG+ + P E + G P+ K A G G+ V S E+ Sbjct: 156 RAIAIAAGVPVVPGTDAPIT--SLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEEL 213 Query: 205 AIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A + + VE+ I+ R IE +LG+ E Sbjct: 214 EENYTRAYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYER--DCSIQRRH 271 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ + A + P++ ++ + +V+ + +G V+ + + E+N Sbjct: 272 QKVVE-----IAPAAHLDPQLRTRLTSDSVKLAKQVGYENAGTVEFLVDRHGKHYFIEVN 326 Query: 318 TLPGFTNISMYPKLWQASGLGYTD 341 + + + + + Sbjct: 327 SRLQVEHTV----TEEITDVDLVH 346 >ref|NP_459135.1| (NC_003197) D-alanine-D-alanine ligase B, affects cell division [Salmonella typhimurium LT2] gb|AAL19094.1| (AE008700) D-alanine-D-alanine ligase B, affects cell division [Salmonella typhimurium LT2] Length = 306 Score = 224 bits (571), Expect = 1e-57 Identities = 102/349 (29%), Positives = 168/349 (47%), Gaps = 50/349 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 ++ ++ GG SAE +VSL S ++ + + + + Sbjct: 4 KIAVLLGGTSAERDVSLNSGAAVLAGLREGGINAHPVDPQ-------------------- 43 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 +F +HG GEDG+LQGML + Sbjct: 44 -----------------------EVDVAQLKAMGFQKVFIALHGRGGEDGTLQGMLELLG 80 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL---GLP 181 LP+ GS V+ASA MDK +K L + AGL +AP++ LTRA E ++++ GLP Sbjct: 81 LPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSEEQKARISALGLP 140 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 L VKP+ +GSSVG++KV E A+ LAF+ D ++++E+ + G E A++G + Sbjct: 141 LIVKPSREGSSVGMTKVVEENALQGALSLAFQHDDEILIEKWLCGPEFTVAIVGEE---I 197 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 I FY Y+ KY+ D + PA + ++++ +QA++ LGC G R+ Sbjct: 198 LPSIRIQPAGTFYDYEAKYL-SDETQYFCPAGLDASQEAALQSLVLQAWKALGCTGWGRI 256 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 DV L + + + E NT PG T+ S+ P + +G+ ++ L+ R++ELA Sbjct: 257 DVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 >ref|NP_293843.1| (NC_001263) acetyl-CoA carboxylase, biotin carboxylase subunit [Deinococcus radiodurans] pir||B75558 acetyl-CoA carboxylase, biotin carboxylase subunit - Deinococcus radiodurans (strain R1) gb|AAF09707.1|AE001874_4 (AE001874) acetyl-CoA carboxylase, biotin carboxylase subunit [Deinococcus radiodurans] Length = 445 Score = 223 bits (569), Expect = 2e-57 Identities = 53/344 (15%), Positives = 114/344 (32%), Gaps = 25/344 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 + +R ++ L I + + Y + + L + + + Sbjct: 1 MFKKILIANRGEIALRVIRTAREMGIQTVVVYSTADEKSLPVLLADESVCVGPPASNQSY 60 Query: 86 QLID-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 I + + + I P +G + E+ M R + F+G + A K Sbjct: 61 LNIPNILSAALMTGAEAIHPG-YGFMAENPDFAEMCREHGIVFIGPTPESMRALGSKAGG 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + + + + P + + ++G P+ +K + G G + ++E+ Sbjct: 120 REIAAQSNVPTVPGTGVL---ESVDAALLAAKQIGYPVLLKASAGGGGRGQKVIRTQEEL 176 Query: 205 AIAVDLA------FEFDHKVIVEQGIKG-REIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + A + D +I+E+ ++ R IE V+G+ GE + Sbjct: 177 QKGFNQAQEEARLYFGDPAIIMEKFLEEFRHIEVQVMGDGQGHVIHIGER--DCSIQRRN 234 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E P+ + + +I A V+ Q + AG ++ + + E+N Sbjct: 235 QKLIEE------APSTLPESLRQEILAAGVRLAQFVNYAGAGTLEFIMDRDGNYYFMEMN 288 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALK 361 T + S L L I L + + +K Sbjct: 289 TRIQVEHCV----SEMISSLDLVRLQIE-IAAGLGLNIQQDDVK 327 >ref|NP_454742.1| (NC_003198) D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica serovar Typhi] emb|CAD01287.1| (AL627265) D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica serovar Typhi] Length = 306 Score = 223 bits (568), Expect = 2e-57 Identities = 103/349 (29%), Positives = 168/349 (47%), Gaps = 50/349 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 ++ ++ GG SAE +VSL S ++ + + D + Sbjct: 4 KIAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQ-------------------- 43 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 +F +HG GEDG+LQGML + Sbjct: 44 -----------------------EVDVAQLKAMGFQKVFIALHGRGGEDGTLQGMLELLG 80 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL---GLP 181 LP+ GS V+ASA MDK +K L + AGL +AP++ LTRA E ++++ GLP Sbjct: 81 LPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSEEQKARISALGLP 140 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 L VKP+ +GSSVG++KV E A+ LAF+ D ++++E+ + G E A++G + Sbjct: 141 LIVKPSREGSSVGMTKVVEENALQGALSLAFQHDDEILIEKWLCGPEFTVAIVGEE---I 197 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 I FY Y+ KY+ D + PA + ++++ +QA++ LGC G R+ Sbjct: 198 LPSIRIQPAGTFYDYEAKYL-SDETQYFCPAGLEASQEAALQSLVLQAWKALGCTGWGRI 256 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 DV L + + + E NT PG T+ S+ P + +G+ ++ L+ R++ELA Sbjct: 257 DVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 >ref|NP_297342.1| (NC_002488) biotin carboxylase subunit of acetyl CoA carboxylase [Xylella fastidiosa 9a5c] pir||E82853 biotin carboxylase subunit of acetyl CoA carboxylase XF0049 [imported] - Xylella fastidiosa (strain 9a5c) gb|AAF82862.1|AE003859_3 (AE003859) biotin carboxylase subunit of acetyl CoA carboxylase [Xylella fastidiosa 9a5c] Length = 469 Score = 223 bits (568), Expect = 2e-57 Identities = 53/338 (15%), Positives = 113/338 (32%), Gaps = 24/338 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ L + + + + + H+A+ + + P + I Sbjct: 18 KVVIANRGEIALRILRACHTLGIRTVAVHSTVDRNLKHVAMADESVCIGSAPSAESYLNI 77 Query: 89 D-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + I P +G L E+ S + + F+G DK Sbjct: 78 PALIAAAEVTDAQAIHPG-YGFLSENASFAERVEQSGFIFIGPRAETIRLMGDKVQAIHA 136 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 ++ AG+ P + + ++ ++G P+ +K A G G+ V +E A Sbjct: 137 MKAAGVPCVPGSDGPLGDDIVANV-KIAREIGYPVIIKAAGGGGGRGMRVVHTEVGLKAA 195 Query: 208 VDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 ++ A + +V +E+ ++ R +E VL + A GE K Sbjct: 196 IETTQSEAKAAFGNGQVYMEKFLENPRHVEIQVLADGQGNAIHLGER--DCSMQRRHQKV 253 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E I + ++I + V A +G G + E+NT Sbjct: 254 VEE-----APAPGITEALRNEIGQVCVDACIRIGYRGAGTFEFLF-ENGRFYFIEMNTRI 307 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 + P + +G+ + +L A + + Sbjct: 308 QVEH----PVTERITGIDL--VCEQLRIAAGQPLSIKQ 339 >ref|NP_245081.1| (NC_002663) DdlB [Pasteurella multocida] sp|P57819|DDL_PASMU D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAK02228.1| (AE006049) DdlB [Pasteurella multocida] Length = 309 Score = 222 bits (567), Expect = 3e-57 Identities = 107/352 (30%), Positives = 174/352 (49%), Gaps = 47/352 (13%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 +++ ++ ++ GG SAE EVSL S + +++A+ + FD + + Sbjct: 5 LKQEKIAVLLGGTSAEREVSLDSGQAVLNALLSAGFDAHPIDPKTFPVATL--------- 55 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 D +F I+HG GEDG++QG+L Sbjct: 56 ----------------------------------KEQGFDRVFNILHGRGGEDGTMQGLL 81 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 +P+ G V+ SA MDK TK L + GL +A +T+AN ++ + V KLGL Sbjct: 82 EQIGIPYTGCGVMTSALTMDKMRTKMLWKAFGLPVAEMEIVTKANVGELNPSAVVEKLGL 141 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+ VKP+ +GSSVG++KV E AVD A ++D V++E+ + G E VL N+ Sbjct: 142 PVMVKPSLEGSSVGLTKVKRVEDLKSAVDFALKYDDTVLIEEWLSGAEFTVPVLDNE--- 198 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 IV +FY Y+ KYI D + P+ ++ E D+++ + QAY +GC G +R Sbjct: 199 VLPSIRIVPEGEFYDYEAKYI-SDNTQYFCPSGLSAEREDELKQLVKQAYDVVGCRGWSR 257 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 +DV L + + E+NT PG T+ S++PK G + L+ +++EL+ E Sbjct: 258 IDVMLDGNDAFRLVEVNTNPGMTSHSLFPKSAATVGYSFEQLVVKILELSAE 309 >ref|NP_296778.1| (NC_002620) acetyl-coenzyme A carboxylase, biotin carboxylase [Chlamydia muridarum] pir||D81708 acetyl-coenzyme A carboxylase, biotin carboxylase TC0400 [imported] - Chlamydia muridarum (strain Nigg) gb|AAF39257.1| (AE002306) acetyl-coenzyme A carboxylase, biotin carboxylase [Chlamydia muridarum] Length = 457 Score = 222 bits (566), Expect = 4e-57 Identities = 58/344 (16%), Positives = 119/344 (33%), Gaps = 25/344 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ + I +S + Y + + H+ L A + + + I Sbjct: 3 KVLIANRGEIAVRIIRACHDLGLSTVAIYSVADQEALHVLLADEAVCIGEAQAAKSYLKI 62 Query: 89 D-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + D + P +G L E+ + + L F+G + A DK K+L Sbjct: 63 ANILAACEITGADAVHPG-YGFLSENANFASICESCGLTFIGPSAESIATMGDKVAAKQL 121 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + + P + + K+G P+ +K G G+ V ++++ A Sbjct: 122 AKKIKCPVIPGSDGVVKDEVEGI--RIAEKIGFPIVIKAVAGGGGRGIRIVREKDEFYRA 179 Query: 208 VDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A + V +E+ I+ R +E V+G+ GE K Sbjct: 180 FTAARAEAESGFNNPDVYIEKFIENPRHLEVQVIGDKYGNYVYLGER--DCTVQRRRQKL 237 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 I+E + PE+ K+ +AV ++ G + V+ L E E+NT Sbjct: 238 IEE-----TPSPILTPEMRAKVGKVAVDLARSAGYFSVGTVEFLLDAEKRFYFMEMNTRI 292 Query: 321 GFTNISMYPKLWQASGLGYTDLITRL-IELALERHAADNALKTT 363 + + +G+ L ++ + + ++ T Sbjct: 293 QVEHT----ITEEITGIDL--LKAQISVAKGEKLPWKQKNIEFT 330 >gb|AAF32338.1|AF218939_6 (AF218939) acetyl-CoA carboxylase [Bacillus subtilis] Length = 430 Score = 222 bits (566), Expect = 4e-57 Identities = 61/331 (18%), Positives = 118/331 (35%), Gaps = 28/331 (8%) Query: 40 LLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV-PGKHEHQLIDAQNGQPLPT 98 + I + + A+ Y D H A + + + + Sbjct: 1 MRIIRTCSRLGIKTAAVYSEADRDALHTKAATEAYYIGESRVSESYLNIERIIEAAKKAN 60 Query: 99 VDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPF 158 D I P +G L E+ + N+ F+G A K ++ + +AG+ + P Sbjct: 61 ADAIHPG-YGLLSENSRFAQRCKEENIVFIGPSPAVIAKIGSKIKARKAMEEAGVPVVPG 119 Query: 159 ITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVD------LAF 212 ++ + + A S++G P+ +K + G +G+ V EE A + F Sbjct: 120 VSESLGDIQAACLA--ASEIGYPVMLKASAGGGGIGMQLVPDEEALIKAYEGNKKRAADF 177 Query: 213 EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVP 271 D + +E+ I+ R IE +L + + A E K I+E Sbjct: 178 FGDGSMYIEKVIEHARHIEIQILADHHGHAVHLFER--DCSVQRRHQKVIEE-----APS 230 Query: 272 AAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKL 331 + E+ KI AV+A + +G A ++ + E+NT + P Sbjct: 231 PFVDDELRMKIGETAVKAAKAIGYANAGTIEFLVDENKNFYFLEMNTRLQVEH----PVT 286 Query: 332 WQASGLGYTDLITRLIELALE---RHAADNA 359 + +GL L+ + + +A R + + Sbjct: 287 EEITGLD---LVEQQLRVAEGQTLRFSQQDI 314 >ref|NP_104954.1| (NC_002678) pyruvate carboxylase [Mesorhizobium loti] dbj|BAB50740.1| (AP003003) pyruvate carboxylase [Mesorhizobium loti] Length = 1152 Score = 222 bits (566), Expect = 4e-57 Identities = 46/340 (13%), Positives = 106/340 (30%), Gaps = 30/340 (8%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA------- 77 I + +R ++ + + + + + H + + Sbjct: 1 MAITKILVANRSEIAIRVFRAANELGLKTVAIWAEEDKYSLHRFKADESYQVGRGPHLTK 60 Query: 78 -QVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASA 136 P + + + L D I P +G L E A + F+G Sbjct: 61 DMGPIESYLSIEEVIRVARLSGADAIHPG-YGLLSESPEFAEACAQAGITFIGPKPDTMR 119 Query: 137 ACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVS 196 +K + L + G+ + P + + ++ ++G P+ +K + G G+ Sbjct: 120 RLGNKVAARNLAIEVGVPVIPATDPLPDD--MEAVKKLAKEIGYPVMLKASWGGGGRGMR 177 Query: 197 KVTSEEQYAIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVL 249 + SE A V A +V +E+ I+ R +E VLG+ + A E Sbjct: 178 AIRSEADLAREVTEGKREAKAAFGKDEVYLEKLIERARHVEVQVLGDTHGNAVHLFER-- 235 Query: 250 TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE- 308 + K ++ + +++ A++ + G V+ + Sbjct: 236 DCSIQRRNQKVVE-----RAPAPYLEMSQREELCGYALKIARETSYIGAGTVEFLQDADT 290 Query: 309 NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 + E+N + Q +G+ +++ Sbjct: 291 GKFYFIEVNPRIQVEHTV----TEQVTGIDIVKAQIHILD 326 >ref|NP_387384.1| (NC_003047) PROBABLE PYRUVATE CARBOXYLASE PROTEIN [Sinorhizobium meliloti] emb|CAC47857.1| (AL591793) PROBABLE PYRUVATE CARBOXYLASE PROTEIN [Sinorhizobium meliloti] Length = 1152 Score = 222 bits (566), Expect = 5e-57 Identities = 37/340 (10%), Positives = 98/340 (27%), Gaps = 30/340 (8%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA------- 77 +I + +R ++ + + + + + H + + Sbjct: 1 MSISKILVANRSEIAIRVFRAANELGLKTVAIWAEEDKLALHRFKADESYQVGRGPHLPR 60 Query: 78 -QVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASA 136 P + + L D I P +G L E + F+G Sbjct: 61 DLGPIMSYLSIDEVIRVAKLSGADAIHPG-YGLLSESPEFAEACAANGITFIGPKPETMR 119 Query: 137 ACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVS 196 +K + L G+ + P + + ++G P+ +K + G G+ Sbjct: 120 QLGNKVAARNLAISIGVPVVPATEPLPDDPEE--IKRLAEEIGYPVMLKASWGGGGRGMR 177 Query: 197 KVTSEEQYAIAVDLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVL 249 + + V A +V +E+ ++ R +E +LG+ + E Sbjct: 178 AIRDPKDLIREVTEAKREAKAAFGKDEVYLEKLVERARHVESQILGDTHGNVVHLFER-- 235 Query: 250 TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE- 308 + K ++ + ++ +++ + G V+ + + Sbjct: 236 DCSIQRRNQKVVE-----RAPAPYLNDAQRQELADYSLKIARATNYIGAGTVEYLMDSDT 290 Query: 309 NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 + E+N + +G+ +++ Sbjct: 291 GKFYFIEVNPRIQVEHTV----TEVVTGIDIVKAQIHILD 326 >ref|NP_253100.1| (NC_002516) D-alanine--D-alanine ligase [Pseudomonas aeruginosa] pir||C83094 D-alanine--D-alanine ligase PA4410 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAF26456.1| (U19797) D-alanine:D-alanine ligase B [Pseudomonas aeruginosa] gb|AAG07798.1|AE004856_9 (AE004856) D-alanine--D-alanine ligase [Pseudomonas aeruginosa] Length = 319 Score = 222 bits (565), Expect = 5e-57 Identities = 104/348 (29%), Positives = 156/348 (43%), Gaps = 51/348 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 RV ++FGGKSAE EVSL+S ++ ++ + D + + + + + Sbjct: 20 RVAVLFGGKSAEREVSLKSGAMVLQSLLAAGVDAFGIDVGEDLLQRLVE----------- 68 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 +D F I+HG GEDGS+QG+L A Sbjct: 69 --------------------------------EKIDRAFIILHGRGGEDGSMQGLLECAG 96 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ GS VLASA MDK TKR+ GL + L + E +LG PL V Sbjct: 97 IPYTGSGVLASALAMDKLRTKRVWLSLGLPTPDYAVLASEDD----CREAAQRLGFPLIV 152 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KPA++GSS+G++KV ++ A A +D +V+VEQ I G E A L Q Sbjct: 153 KPAHEGSSIGMAKVGGLDELIAAWREAARYDSQVLVEQWISGPEFTVATLR---GQVLPA 209 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 + FY YD KY+ D VP + +++ + +A LG G R DV Sbjct: 210 IRLGTPHTFYDYDAKYLASDTRY-QVPCGLDEAKERELKELTARACDALGIQGWGRADVM 268 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 E + E+NT PG T+ S+ P +A+GL + L+ ++ + E Sbjct: 269 QDAEGRFWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADSRE 316 >ref|NP_501777.1| (NM_069376) carbomoyl-phosphate carboxylase [Caenorhabditis elegans] pir||T21641 hypothetical protein F32B6.2 - Caenorhabditis elegans emb|CAB03038.1| (Z81074) Similarity to Soybean 3-methylcrotonyl-CoA carboxylase (TR:Q42777), contains similarity to Pfam domain: PF00289 (Carbamoyl-phosphate synthase (CPSase)), Score=534.3, E-value=2.8e-157, N=2; PF00364 (Biotin-requiring enzymes), Score=54.1, E-valu> Length = 688 Score = 222 bits (565), Expect = 6e-57 Identities = 54/347 (15%), Positives = 121/347 (34%), Gaps = 36/347 (10%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA-QVPGKHEH 85 I + +R ++ + + + + + + + + A + + + Sbjct: 19 IQRVLVANRGEIAIRVQNTARKMGIETVAVFSDADRNSLFVKKADKAYHIGPPLAAESYL 78 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + N I P +G L E+ A L F+G A K+V+K Sbjct: 79 NMDKIINSALRSGAQAIHPG-YGFLSENAGFAEKCAQAGLVFIGPPAQAIRDMGAKNVSK 137 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 +++ DA + + ++ + + + +++G P+ +K G G+ +E ++ Sbjct: 138 QIMEDAKVPVVKG--FHGEDQSDANLKKKSAEIGYPVMLKAVYGGGGKGMRIAWNEAEFE 195 Query: 206 IAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 + A + +++VE+ ++ R +E V G+ + E Sbjct: 196 EKLASARNEAKKSFGNDEMLVEKFVEKPRHVEVQVFGDHHGNYVHLWER--DCSVQRRHQ 253 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K I+E + + K+ AV+A +G G V+ + P E E+NT Sbjct: 254 KIIEE-----APAPNMEHDTRVKLGESAVRAAAAVGYVGAGTVEFIMDPRGEFYFMEMNT 308 Query: 319 LPGFTNISMYPKLWQASGLGY--------------TDLITRLIELAL 351 + P +G+ + TDL+ + +A Sbjct: 309 RLQVEH----PVSEAITGIDFIMGDWKLSNNLISGTDLVEWQLRVAQ 351 >emb|CAA70282.1| (Y09061) acetyl-CoA carboxylase, biotin carboxylase subunit [Arabidopsis thaliana] Length = 539 Score = 221 bits (564), Expect = 7e-57 Identities = 55/342 (16%), Positives = 114/342 (33%), Gaps = 27/342 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ + I + + + Y D H+ L A + + P + +I Sbjct: 76 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADEAVCIGEAPSNQSYLVI 135 Query: 89 DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLL 148 + + +G L E+ M R + F+G + DK + + Sbjct: 136 PNVLSAAISRGCTMLHPGYGFLSENALFVEMCRDHGINFIGPNPDTIRVMGDKATARETM 195 Query: 149 RDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV 208 ++AG+ P + V +++G P+ + G G+ ++ + Sbjct: 196 KNAGVPTVPGSDGLL--QSTEEAVRVANEIGFPVMITATAGGGGRGMRLAKEPGEFVKLL 253 Query: 209 DLAF------EFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYI 261 A + +E+ + R IE VL + GE + K + Sbjct: 254 QQAKSEAAAAFGNDGCYLEKFVQNPRHIEFQVLADKFGNVVHFGER--DCSIQRRNQKLL 311 Query: 262 DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG 321 +E A+ E+ + AV A ++G G+ V+ L E+NT Sbjct: 312 EE------PSPALTAELRKAMGDAAVAAAASIGYIGVGTVEFLLDXRGSFYFMEMNTRIQ 365 Query: 322 FTNISMYPKLWQASGLGYTDLITRLIELALE---RHAADNAL 360 + P + LI I +A+ R+ ++ + Sbjct: 366 VEH----PVTEMIYSVD---LIEEQIRVAMGEKLRYKQEDIV 400 >ref|NP_350153.1| (NC_003030) Biotin carboxylase [Clostridium acetobutylicum] gb|AAK81493.1|AE007853_8 (AE007853) Biotin carboxylase [Clostridium acetobutylicum] Length = 447 Score = 221 bits (564), Expect = 7e-57 Identities = 56/333 (16%), Positives = 114/333 (33%), Gaps = 25/333 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 I + +R ++ + I + + + Y + H+ L A + + + Sbjct: 1 MISKILIANRGEIAVRIIRACREMGIETVAIYSEADKESMHVYLADEAVCVGPAKTQDSY 60 Query: 86 QLIDAQNGQP-LPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 I L I P G L E+G M N+ F+G D +K Sbjct: 61 LNIGNIISATVLTKAQAIHPGF-GFLSENGKFAKMCSECNIAFIGPDAETIENMGNKAKA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + ++ AG+ + P T + +++G P+ +K + G G+ V E+ Sbjct: 120 REIMIKAGVPVVPGCEGTI--DSEDQALKEATRIGYPVMLKASAGGGGRGIRIVREEKDL 177 Query: 205 AIAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + A D + +E+ I + R +E +LG+ GE + Sbjct: 178 ISSFRNAKSEAKAAFGDDSMYMEKFIEEPRHVEFQILGDSFGNVVYLGER--DCSIQRRN 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E + E+ ++ AV+A + + ++ L E+N Sbjct: 236 QKVLEE-----APSPVMTEELRREMGEAAVRAAKAVNYKNAGTIEFLLDKHGNYYFMEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 T + +G+ L+ I++A Sbjct: 291 TRIQVEH----GITEMVTGVD---LVKEQIKIA 316 >ref|NP_107983.1| (NC_002678) 3-methylcrotonyl-CoA carboxylase biotin-containing subunit [Mesorhizobium loti] dbj|BAB54128.1| (AP003012) 3-methylcrotonyl-CoA carboxylase biotin-containing subunit [Mesorhizobium loti] Length = 694 Score = 221 bits (564), Expect = 8e-57 Identities = 61/340 (17%), Positives = 116/340 (33%), Gaps = 30/340 (8%) Query: 24 AKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA-QVPGK 82 + +R ++ I + V + Y H+ + A + G+ Sbjct: 39 GSMFSKILIANRGEIACRVIRTARKMGVRTVAVYSDADAKSLHVEMADEAVHIGPPSVGE 98 Query: 83 HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKD 142 + I P +G L E+ + A L F+G + A KD Sbjct: 99 SYLRGDRIVAAALSTGAQAIHPG-YGFLSENPDFVDQVVAAGLTFIGPSAASIRAMGLKD 157 Query: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEE 202 KRL+ AG+ + P + + A ++G P+ +K G G+ +V + Sbjct: 158 AAKRLMEKAGVPVVPGY--HGEAQEIVLLASKAREIGYPVLIKARAGGGGKGMRRVEHPD 215 Query: 203 QYAIAVDLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYA 255 ++ A+ A D +V+VE+ + R IE V G++ A E Sbjct: 216 DFSEALSSARREAKAAFGDDRVLVEKYVDKPRHIEVQVFGDNFGNAVHLYER--DCSAQR 273 Query: 256 YDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE-----NE 310 K I+E + P + + AV+A + +G +G ++ + + Sbjct: 274 RHQKVIEE-----APAPGMTPALRKAMTEAAVKAAKAIGYSGAGTIEFIVDASQGLKPDR 328 Query: 311 VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 E+NT + P +G L+ + +A Sbjct: 329 FWFMEMNTRLQVEH----PVTEMVTGTD---LVEWQLRVA 361 >ref|NP_509293.1| (NM_076892) Propionyl-coA carboxylase alpha chain precursor [Caenorhabditis elegans] pir||T16187 hypothetical protein F27D9.5 - Caenorhabditis elegans gb|AAA93384.1| (U49829) Hypothetical protein F27D9.5 [Caenorhabditis elegans] Length = 724 Score = 221 bits (563), Expect = 8e-57 Identities = 56/334 (16%), Positives = 115/334 (33%), Gaps = 23/334 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQ-L 87 + +R ++ I + + + + H+ + A + + P + Sbjct: 51 KILIANRGEIACRVIKTARAMGIKTVAVHSDVDSNSLHVKMADEAVCVGEAPTAKSYLRA 110 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + P +G L E+ L A F+G + A DK +K++ Sbjct: 111 DRILQAVEDTGAQAVHPG-YGFLSENTKFAAELEKAGAKFIGPNSKAILDMGDKIHSKKI 169 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 A +++ P A+ +V +G P+ +K + G G+ +++Q Sbjct: 170 ATAARVSMIPGYDGEIADEDMC--VKVSRDIGYPVMIKASAGGGGKGMRVAWNDKQAREG 227 Query: 208 VDLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 L+ + D +++VE+ I R IE VL + + A E + K Sbjct: 228 YRLSKQEAASSFGDDRMLVEKFIDNPRHIEMQVLCDKHGNALWLNER--ECSIQRRNQKV 285 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 I+E + + PE+ K+ AVQ + +G V+ + + E+NT Sbjct: 286 IEE-----APSSFVPPEMRRKMGEQAVQLAKAVGYDSAGTVEFLVDSQRNFYFLEMNTRL 340 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 + P +G+ + R + Sbjct: 341 QVEH----PITECITGIDIVQQMLR-VSYGHPLP 369 >ref|NP_355659.1| (NC_003062) AGR_C_4940p [Agrobacterium tumefaciens] [Agrobacterium tumefaciens str. C58 (Cereon)] ref|NP_533391.1| (NC_003304) pyruvate carboxylase [Agrobacterium tumefaciens str. C58 (U. Washington)] gb|AAK88444.1| (AE008185) AGR_C_4940p [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAL43707.1| (AE009219) pyruvate carboxylase [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 1174 Score = 221 bits (563), Expect = 9e-57 Identities = 44/351 (12%), Positives = 104/351 (29%), Gaps = 30/351 (8%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA--------Q 78 I + +R ++ + + + + + H + + Sbjct: 24 ISKILVANRSEIAIRVFRAANELGIKTVAIWAEEDKLSLHRFKADESYQVGRGPHLAKDM 83 Query: 79 VPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAAC 138 P + + + L D I P +G L E A + F+G Sbjct: 84 GPIESYLSIEEVIRVAKLSGADAIHPG-YGLLSESPEFVEACNKAGITFIGPTPDTMRQL 142 Query: 139 MDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKV 198 +K + L + + P + + ++G P+ +K + G G+ + Sbjct: 143 GNKVAARNLAISVDVPVVPATNPLPDDIAE--VERMAEEIGYPVMLKASWGGGGRGMRAI 200 Query: 199 TSEEQYAIAVDLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTS 251 +E A V A +V +E+ ++ R +E +LG+ + E Sbjct: 201 RKKEDLAREVTEAKREAKAAFGKDEVYLEKLVERARHVESQILGDTHGNVVHLFER--DC 258 Query: 252 DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE-NE 310 + K ++ ++ ++ A +++ G V+ + + + Sbjct: 259 SIQRRNQKVVE-----RAPAPYLSEAQRQELAAYSLKIAAATNYIGAGTVEYLMDADTGK 313 Query: 311 VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALK 361 E+N + +G+ ++E A A K Sbjct: 314 FYFIEVNPRIQVEHTV----TEVVTGIDIVKAQIHILEGAAIGTAESGVPK 360 >ref|NP_539184.1| (NC_003317) PYRUVATE CARBOXYLASE [Brucella melitensis] gb|AAL51448.1| (AE009469) PYRUVATE CARBOXYLASE [Brucella melitensis] Length = 1158 Score = 221 bits (563), Expect = 1e-56 Identities = 42/338 (12%), Positives = 102/338 (29%), Gaps = 30/338 (8%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA--------Q 78 I + +R ++ + + + + + H + + Sbjct: 8 ISKILVANRSEIAIRVFRAANELGLKTVTIWAEEDKLSLHRFKADESYQVGRGPHLDRDL 67 Query: 79 VPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAAC 138 P + + + L D I P +G L E + F+G Sbjct: 68 GPIESYLSIDEIIRVAKLSGADAIHPG-YGLLSESPEFAEACAENGIVFIGPKPETMRRL 126 Query: 139 MDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKV 198 +K + L + G+ + P + ++ +++G PL +K + G G+ + Sbjct: 127 GNKVAARNLAIEIGVPVVPATDPLPDDMDE--VKKLAAQIGYPLMLKASWGGGGRGMRAI 184 Query: 199 TSEEQYAIAVDLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTS 251 +E A V A +V +E+ ++ R +E +LG+ A E Sbjct: 185 RAEADLAREVMEAKREAKAAFGKDEVYLEKLVERARHVEVQILGDTYGNAVHLFER--DC 242 Query: 252 DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE-NE 310 + K ++ + ++ ++ G V+ + + + Sbjct: 243 SIQRRNQKVVE-----RAPAPYLNDAQRRELADYGLKIAHATDYIGAGTVEFLMDADTGK 297 Query: 311 VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 E+N + + +G+ ++E Sbjct: 298 FYFIEVNPRIQVEHTV----TEEVTGIDIVKAQIHILE 331 >ref|NP_414634.1| (NC_000913) D-alanine-D-alanine ligase B, affects cell division [Escherichia coli K12] sp|P07862|DDLB_ECOLI D-ALANINE--D-ALANINE LIGASE B (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||CEECDL D-alanine--D-alanine ligase (EC 6.3.2.4) B - Escherichia coli pdb|1IOV| Complex Of D-Ala:d-Ala Ligase With Adp And A Phosphoryl Phosphonate pdb|2DLN| Mol_id: 1; Molecule: D-Alanine--D-Alanine Ligase; Chain: Null; Ec: 6.3.2.4 emb|CAA38869.1| (X55034) D-Ala:D-Ala ligase (Ddl) [Escherichia coli] gb|AAA23672.1| (M14029) ddl cell wall enzyme [Escherichia coli] gb|AAA23815.1| (K02668) D-alanine:D-alanine ligase [Escherichia coli] dbj|BAA01357.1| (D10483) D-alanine-D-alanine ligase [Escherichia coli] gb|AAC73203.1| (AE000118) D-alanine-D-alanine ligase B, affects cell division [Escherichia coli K12] Length = 306 Score = 220 bits (562), Expect = 1e-56 Identities = 106/349 (30%), Positives = 169/349 (48%), Gaps = 50/349 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 ++ ++ GG SAE EVSL S ++ + + D + Sbjct: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDP--------------KEVDVTQ 49 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 +F +HG GEDG+LQGML + Sbjct: 50 L-----------------------------KSMGFQKVFIALHGRGGEDGTLQGMLELMG 80 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL---GLP 181 LP+ GS V+ASA MDK +K L + AGL +AP++ LTRA + +++ GLP Sbjct: 81 LPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLP 140 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 + VKP+ +GSSVG+SKV +E A+ LAF+ D +V++E+ + G E A+LG + Sbjct: 141 VIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE---I 197 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 I + FY Y+ KY+ D + PA + ++A+ ++A+ TLGC G R+ Sbjct: 198 LPSIRIQPSGTFYDYEAKYL-SDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRI 256 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 DV L + + + E NT PG T+ S+ P + +G+ ++ L+ R++ELA Sbjct: 257 DVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 >ref|NP_009767.1| (NC_001134) Urea amidolyase (contains urea carboxylase and allophanate hydrolase); Dur1,2p [Saccharomyces cerevisiae] sp|P32528|DUR1_YEAST UREA AMIDOLYASE [INCLUDES: UREA CARBOXYLASE ; ALLOPHANATE HYDROLASE ] pir||S46082 urea carboxylase (EC 6.3.4.6) - yeast (Saccharomyces cerevisiae) emb|CAA85172.1| (Z36077) ORF YBR208c [Saccharomyces cerevisiae] Length = 1835 Score = 220 bits (562), Expect = 1e-56 Identities = 59/331 (17%), Positives = 111/331 (32%), Gaps = 29/331 (8%) Query: 30 AIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSL-AQVPGKHEHQLI 88 + +R ++ + I + + + Y H+ + L + + Sbjct: 636 VLIANRGEIAVRIIKTLKKLGIRSVAVYSDPDKYSQHVTDADVSVPLHGTTAAQTYLDMN 695 Query: 89 DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLL 148 + I P +G L E+ A + FVG K +++ Sbjct: 696 KIIDAAKQTNAQAIIPG-YGFLSENADFSDACTSAGITFVGPSGDIIRGLGLKHSARQIA 754 Query: 149 RDAGLNIAPFI-TLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + AG+ + P +T +V ++L P+ VK G +G+ KV SEE Sbjct: 755 QKAGVPLVPGSLLITSVEEAK----KVAAELEYPVMVKSTAGGGGIGLQKVDSEEDIEHI 810 Query: 208 VD------LAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 + F D V +E+ I+ R +E ++G+ +A GE + K Sbjct: 811 FETVKHQGETFFGDAGVFLERFIENARHVEVQLMGDGFGKAIALGER--DCSLQRRNQKV 868 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEINTL 319 I+E + + +R A L V+ ++E E+NT Sbjct: 869 IEE-----TPAPNLPEKTRLALRKAAESLGSLLNYKCAGTVEFIYDEKKDEFYFLEVNTR 923 Query: 320 PGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + P +GL L+ +I +A Sbjct: 924 LQVEH----PITEMVTGLD---LVEWMIRIA 947 >gb|AAA88512.1| (M22631) alpha-propionyl-CoA carboxylase (EC 6.4.1.3) [Rattus norvegicus] Length = 721 Score = 220 bits (561), Expect = 1e-56 Identities = 53/338 (15%), Positives = 111/338 (32%), Gaps = 23/338 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH-QL 87 + +R ++ I + + + + H+ + A + P + + Sbjct: 58 KILIANRGEIACRVIKTCRKMGIRTVAIHSDVDASSVHVKMADEAVCVGPAPTSKSYLNM 117 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + P +G L E+ L ++ F+G D A A DK +K L Sbjct: 118 DAIMEAIKKTGAQAVHPG-YGFLSENKEFAKCLAAEDVTFIGPDTHAIQAMGDKIESKLL 176 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + A +N P + + ++G P+ +K + G G+ +E+ Sbjct: 177 AKRAKVNTIPGFDGVLKDADE--AVRIAREIGYPVMIKASAGGGGKGMRIPWDDEETRDG 234 Query: 208 VDLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 + + D ++++E+ I R IE VLG+ + A E + K Sbjct: 235 FRFSSQEAASSFGDDRLLIEKFIDNPRHIEIQVLGDKHGNALWLNER--ECSIQRRNQKV 292 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E + + PE + AV + + + V+ + + E+NT Sbjct: 293 VEEAPSIF-----LDPETRRAMGEQAVAWPKAVKYSSAGTVEFLVDSQKNFYFLEMNTRL 347 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 + P +GL + L+ Sbjct: 348 QVEH----PVTECITGLDLVQEMI-LVAKGYPLRHKQE 380 >gb|AAC44388.1| (U51439) pyruvate carboxylase [Rhizobium etli] Length = 1154 Score = 220 bits (561), Expect = 2e-56 Identities = 44/340 (12%), Positives = 105/340 (29%), Gaps = 30/340 (8%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA--------Q 78 I + +R ++ + + + + + H + + Sbjct: 3 ISKILVANRSEIAIRVFRAANELGIKTVAIWAEEDKLALHRFKADESYQVGRGPHLARDL 62 Query: 79 VPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAAC 138 P + + + L D I P +G L E A + F+G Sbjct: 63 GPIESYLSIDEVIRVAKLSGADAIHPG-YGLLSESPEFVDACNKAGIIFIGPKADTMRQL 121 Query: 139 MDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKV 198 +K + L G+ + P + A++ + +G P+ +K + G G+ + Sbjct: 122 GNKVAARNLAISVGVPVVPATEPLPDDMAE--VAKMAAAIGYPVMLKASWGGGGRGMRVI 179 Query: 199 TSEEQYAIAVDLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTS 251 SE A V A +V +E+ ++ R +E +LG+ + E Sbjct: 180 RSEADLAKEVTEAKREAMAAFGKDEVYLEKLVERARHVESQILGDTHGNVVHLFER--DC 237 Query: 252 DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE-NE 310 + K ++ ++ ++ A +++ G V+ + + + Sbjct: 238 SVQRRNQKVVE-----RAPAPYLSEAQRQELAAYSLKIAGATNYIGAGTVEYLMDADTGK 292 Query: 311 VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 E+N + +G+ +++ A Sbjct: 293 FYFIEVNPRIQVEHTV----TEVVTGIDIVKAQIHILDGA 328 >ref|NP_243653.1| (NC_002570) acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus halodurans] dbj|BAB06506.1| (AP001516) acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus halodurans] Length = 452 Score = 220 bits (561), Expect = 2e-56 Identities = 62/334 (18%), Positives = 117/334 (34%), Gaps = 26/334 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 I + +R ++ + I + + + + D H+ + A + P + Sbjct: 1 MIKKLLVANRGEIAVRIIRACRELGIETVAVFSEADRDALHVRMADEAYCIGPTPSAKSY 60 Query: 86 -QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + L VD I P +G L E+ + N+ FVG A + KDV Sbjct: 61 LNFTNIMSVATLTEVDAIHPG-YGFLAENADFAEICGECNITFVGPSADAISKMGTKDVA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + ++ AG+ I P V ++G P+ +K G G+ +EE+ Sbjct: 120 RETMKRAGVPIVPGSEGII--ESVEDGLAVAEQIGYPVIIKATAGGGGKGIRVARNEEEL 177 Query: 205 AIAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + + V +E+ I R +E VL +++ GE Sbjct: 178 RKGINITQQEAATAFGNPGVYLEKYIEDFRHVEIQVLADNHGHVIHLGER--DCSIQRRL 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEI 316 K ++E AI + ++ AV A + + +G V+ + E+ Sbjct: 236 QKLLEE-----TPSPAITEKKRKEMGEAAVAAAKAVNYSGAGTVEFIYDHNNGDFYFMEM 290 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 NT + P +G+ LI I++A Sbjct: 291 NTRIQVEH----PVTEMVTGID---LIKEQIKVA 317 >ref|NP_285788.1| (NC_002655) D-alanine-D-alanine ligase B, affects cell division [Escherichia coli O157:H7 EDL933] ref|NP_308123.1| (NC_002695) D-alanine-D-alanine ligase B [Escherichia coli O157:H7] gb|AAG54396.1|AE005186_2 (AE005186) D-alanine-D-alanine ligase B, affects cell division [Escherichia coli O157:H7 EDL933] dbj|BAB33519.1| (AP002550) D-alanine-D-alanine ligase B [Escherichia coli O157:H7] Length = 306 Score = 220 bits (561), Expect = 2e-56 Identities = 105/349 (30%), Positives = 168/349 (48%), Gaps = 50/349 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 ++ ++ GG SAE EVSL S ++ + + D + Sbjct: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDP--------------KEVDVTQ 49 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 +F +HG GEDG+LQGML + Sbjct: 50 L-----------------------------KSMGFQKVFIALHGRGGEDGTLQGMLELMG 80 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL---GLP 181 LP+ GS V+ASA MDK +K L + AGL +AP++ LTR + +++ GLP Sbjct: 81 LPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRVEFEKGLSDKQLAEISALGLP 140 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 + VKP+ +GSSVG+SKV +E A+ LAF+ D +V++E+ + G E A+LG + Sbjct: 141 VIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE---I 197 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 I + FY Y+ KY+ D + PA + ++A+ ++A+ TLGC G R+ Sbjct: 198 LPSVRIQPSGTFYDYEAKYL-SDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRI 256 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 DV L + + + E NT PG T+ S+ P + +G+ ++ L+ R++ELA Sbjct: 257 DVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 >ref|NP_212334.1| (NC_001318) D-alanine--D-alanine ligase (ddlA) [Borrelia burgdorferi] sp|O51218|DDL_BORBU D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||H70124 D-alanine--D-alanine ligase (ddlA) homolog - Lyme disease spirochete gb|AAC66589.1| (AE001130) D-alanine--D-alanine ligase (ddlA) [Borrelia burgdorferi] Length = 356 Score = 220 bits (560), Expect = 2e-56 Identities = 116/357 (32%), Positives = 191/357 (53%), Gaps = 21/357 (5%) Query: 7 GIVFGGKSAEHEVSLQSAKNIVDA-IDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNADDP 64 ++FGG S EHE+S +SA +I A +D +++++ + IDK G W++ D+ + + Sbjct: 1 MLIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPINT 60 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 +P + +DV+FP+VHG GEDG++QG+L+V + Sbjct: 61 ------------DVLPIVSLLPGFGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMD 108 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN---RHNISFAEVESKLGLP 181 +P VG+ ++ SA +K K LL+ + + PFI + + V+ LG P Sbjct: 109 IPCVGAGIIGSAISSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEVLGYP 168 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 + VKPA GSS+G++ SE Q + A ++D +++E+ I+ REIEC+++GN+ + Sbjct: 169 VIVKPAVLGSSIGINVAYSENQIESFIKEALKYDLTIVIEKFIEAREIECSIIGNEKMKI 228 Query: 242 STCGE-IVLTSDFYAYDTKY--IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 + GE +V FY YD KY I + +PA + I+ A Y+ L GM Sbjct: 229 FSPGEVVVQDFIFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLTYKNLELRGM 288 Query: 299 ARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 ARVD F+ + + +NEINT+PGFT+ISM+ K+ GL + DL+ LI+ A + + Sbjct: 289 ARVDFFVEKKSGTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYAFQSY 345 >sp|P14882|PCCA_RAT PROPIONYL-COA CARBOXYLASE ALPHA CHAIN, MITOCHONDRIAL PRECURSOR (PCCASE ALPHA SUBUNIT) (PROPANOYL-COA:CARBON DIOXIDE LIGASE ALPHA SUBUNIT) Length = 704 Score = 219 bits (559), Expect = 3e-56 Identities = 53/338 (15%), Positives = 111/338 (32%), Gaps = 23/338 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH-QL 87 + +R ++ I + + + + H+ + A + P + + Sbjct: 41 KILIANRGEIACRVIKTCRKMGIRTVAIHSDVDASSVHVKMADEAVCVGPAPTSKSYLNM 100 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + P +G L E+ L ++ F+G D A A DK +K L Sbjct: 101 DAIMEAIKKTGAQAVHPG-YGFLSENKEFAKCLAAEDVTFIGPDTHAIQAMGDKIESKLL 159 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + A +N P + + ++G P+ +K + G G+ +E+ Sbjct: 160 AKRAKVNTIPGFDGVLKDADE--AVRIAREIGYPVMIKASAGGGGKGMRIPWDDEETRDG 217 Query: 208 VDLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 + + D ++++E+ I R IE VLG+ + A E + K Sbjct: 218 FRFSSQEAASSFGDDRLLIEKFIDNPRHIEIQVLGDKHGNALWLNER--ECSIQRRNQKV 275 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E + + PE + AV + + + V+ + + E+NT Sbjct: 276 VEEAPSIF-----LDPETRRAMGEQAVAWPKAVKYSSAGTVEFLVDSQKNFYFLEMNTRL 330 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 + P +GL + L+ Sbjct: 331 QVEH----PVTECITGLDLVQEMI-LVAKGYPLRHKQE 363 >ref|NP_404198.1| (NC_003143) D-alanine--D-alanine ligase B [Yersinia pestis] emb|CAC89413.1| (AJ414143) D-alanine--D-alanine ligase B [Yersinia pestis] Length = 306 Score = 219 bits (558), Expect = 3e-56 Identities = 107/349 (30%), Positives = 164/349 (46%), Gaps = 50/349 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 +V ++ GG SAE EVSL S + ++ + ++ D + Sbjct: 4 KVAVLLGGTSAEREVSLLSGQAVLAGLKEAGIDAYGVD---------------------- 41 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 D +F +HG GEDG+LQG+L Sbjct: 42 ---------------------TKDFPVTQLKEQGFDKVFIALHGRGGEDGTLQGVLEFLQ 80 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR---HNISFAEVESKLGLP 181 LP+ GS V+ASA MDK TK + + GL I+P++ L R +KLGLP Sbjct: 81 LPYTGSGVMASALTMDKLRTKLVWQALGLPISPYVALNRQQFETLSPEELVACVAKLGLP 140 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 L VKP+++GSSVG+SKV + A+ AF+ D V++E+ + G E A+LG++ Sbjct: 141 LIVKPSHEGSSVGMSKVDHASELQKALVEAFQHDSDVLIEKWLSGPEFTVAILGDE---V 197 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 I FY YD KY+ D + P+ ++ E ++ A+A+QAY L C+G RV Sbjct: 198 LPSIRIQPPGVFYDYDAKYL-SDKTQYFCPSGLSDESEQQLAALALQAYHALDCSGWGRV 256 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 DV + + E+NT PG T+ S+ P + GL ++ L+ R++ LA Sbjct: 257 DVMQDRDGHFYLLEVNTSPGMTSHSLVPMAARQYGLSFSQLVARILMLA 305 >ref|NP_505977.1| (NM_073576) pyruvate carboxylase [Caenorhabditis elegans] pir||T20346 pyruvate carboxylase (EC 6.4.1.1) D2023.2 [similarity] - Caenorhabditis elegans emb|CAB02872.1| (Z81052) predicted using Genefinder~Similarity to Human pyruvate carboxylase (TR:G458236), contains similarity to Pfam domain: PF00289 (Carbamoyl-phosphate synthase (CPSase)), Score=572.0, E-value=1.3e-168, N=1; PF00364 (Biotin-requiring enzymes), Scor> gb|AAF60326.1|AF237467_1 (AF237467) pyruvate carboxylase [Caenorhabditis elegans] Length = 1175 Score = 219 bits (557), Expect = 4e-56 Identities = 52/327 (15%), Positives = 106/327 (31%), Gaps = 23/327 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSL--AQVPGKHEHQ 86 + +R ++ + + + + + Y + H A + P Sbjct: 34 KVMVANRGEIAIRVFRALTELNKTSVAIYAEQDKNSMHRLKADEAYLVGKGLPPVAAYLT 93 Query: 87 LIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKR 146 + +D I P +G L E + A + F+G A DK ++ Sbjct: 94 IDQIIETALKHNIDAIHPG-YGFLSERSDFAAACQNAGIVFIGPSPDVMARMGDKVAARQ 152 Query: 147 LLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAI 206 +AG+ + P E + G P+ +K A G G+ +V E+ Sbjct: 153 AAIEAGVQVVPGTPGPITTADE--AVEFAKQYGTPIILKAAYGGGGRGIRRVDKLEEVEE 210 Query: 207 AV------DLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTK 259 A A D + VE+ ++ R IE +LG+ + E K Sbjct: 211 AFRRSYSEAQAAFGDGSLFVEKFVERPRHIEVQLLGDHHGNIVHLYER--DCSVQRRHQK 268 Query: 260 YIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTL 319 ++ + A+ + +KI A A++ + +G V+ + + E+N Sbjct: 269 VVE-----IAPAPALPEGVREKILADALRLARHVGYQNAGTVEFLVDQKGNYYFIEVNAR 323 Query: 320 PGFTNISMYPKLWQASGLGYTDLITRL 346 + + +G+ R+ Sbjct: 324 LQVEHTV----TEEITGVDLVQAQIRI 346 >ref|NP_254123.1| (NC_002516) probable biotin carboxylase subunit of a transcarboxylase [Pseudomonas aeruginosa] pir||G82966 probable biotin carboxylase subunit of a transcarboxylase PA5436 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG08821.1|AE004956_5 (AE004956) probable biotin carboxylase subunit of a transcarboxylase [Pseudomonas aeruginosa] Length = 471 Score = 219 bits (557), Expect = 4e-56 Identities = 56/332 (16%), Positives = 109/332 (31%), Gaps = 25/332 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 I + +R ++ + + + + + Y H+ A S+ P Sbjct: 1 MIKKILIANRGEIAVRIVRACAEMGIRSVAVYSEADRHALHVKRADEAHSIGADPLAGYL 60 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 N D + P +G L E+ L + + F+G DK + Sbjct: 61 NPRALVNLAVESGCDALHPG-YGFLSENAELAEICAERGIKFIGPSAQVIRRMGDKTEAR 119 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 R + AG+ P A+ ++G P+ +K + G G+ + S E+ Sbjct: 120 RSMIAAGVPCTPGTEGNVADLAE--ALREAERIGYPVMLKATSGGGGRGIRRCNSREELE 177 Query: 206 IAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A +V +E+ I + IE +L + E + Sbjct: 178 QAFPRVISEATKAFGSAEVFLEKCIVNPKHIEAQILADSFGNTVHLFER--DCSIQRRNQ 235 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K ++ + PE I +AV+A + +G V+ L + EV E+NT Sbjct: 236 K-----LIEIAPSPQLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLL-ADGEVYFMEMNT 289 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + + +G+ ++ I +A Sbjct: 290 RVQVEHT----ITEEITGID---VVREQIRIA 314 >gb|AAA67356.1| (U12536) 3-methylcrotonyl-CoA carboxylase precursor [Arabidopsis thaliana] Length = 715 Score = 219 bits (557), Expect = 4e-56 Identities = 55/334 (16%), Positives = 105/334 (30%), Gaps = 47/334 (14%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK--HE 84 I + +R ++ + + + + Y D H+ A + K Sbjct: 38 IEKILVANRGEIACRIMRTAKRLGIQTVAVYSDADRDSLHVKSADEADRIGPPSAKRLSY 97 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + I P +G L E + + L F+G A DK + Sbjct: 98 LSGVTIMEAAARTGAQAIHPG-YGFLSESSDFAQLCEDSGLTFIGPPASAIRDMGDKSAS 156 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 KR++ AG+ + P + ++ K+G P+ +KP + G G+ V S + + Sbjct: 157 KRIMGAAGVPLVPGYHGHEQDIDHM--KSEAEKIGYPIIIKPTHGGGGKGMRIVQSGKDF 214 Query: 205 AIAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A + A + +++E+ I + R IE + G+ + E Sbjct: 215 ADSFLGAQREAAASFGVNTILLEKYITRPRHIEVQIFGDKHGNVLHLYER--DCSVQRRH 272 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEI 316 K I+E A +G V+ + ++ E+ Sbjct: 273 QKIIEEAPA-------------------------AVGYYNAGTVEFIVDTESDQFYFMEM 307 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 NT + P G L+ I +A Sbjct: 308 NTRLQVEH----PVTEMIVGQD---LVEWQIRVA 334 >pdb|1IOW| Complex Of Y216f D-Ala:d-Ala Ligase With Adp And A Phosphoryl Phosphinate Length = 306 Score = 219 bits (557), Expect = 5e-56 Identities = 105/349 (30%), Positives = 169/349 (48%), Gaps = 50/349 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 ++ ++ GG SAE EVSL S ++ + + D + Sbjct: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDP--------------KEVDVTQ 49 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 +F +HG GEDG+LQGML + Sbjct: 50 L-----------------------------KSMGFQKVFIALHGRGGEDGTLQGMLELMG 80 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL---GLP 181 LP+ GS V+ASA MDK +K L + AGL +AP++ LTRA + +++ GLP Sbjct: 81 LPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLP 140 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 + VKP+ +GSSVG+SKV +E A+ LAF+ D +V++E+ + G E A+LG + Sbjct: 141 VIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE---I 197 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 I + FY Y+ K++ D + PA + ++A+ ++A+ TLGC G R+ Sbjct: 198 LPSIRIQPSGTFYDYEAKFL-SDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRI 256 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 DV L + + + E NT PG T+ S+ P + +G+ ++ L+ R++ELA Sbjct: 257 DVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 >pir||T06565 acetyl-CoA carboxylase (EC 6.4.1.2) biotin carboxylase chain - soybean (fragment) gb|AAA85742.1| (U34393) acetyl-CoA carboxylase biotin carboxylase subunit [Glycine max] Length = 289 Score = 218 bits (556), Expect = 5e-56 Identities = 48/298 (16%), Positives = 98/298 (32%), Gaps = 17/298 (5%) Query: 33 KSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLID-AQ 91 +R + +L I + + + Y D H+ A + + G + I Sbjct: 1 ANRGETLLRVIRTCREMGIKTVAVYSTADKDSLHVRFADEAACIGKPAGVDSYLNIPHIM 60 Query: 92 NGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDA 151 + D + P +G L E+ + + F+G DK K + A Sbjct: 61 AAAEITNADAVHPG-YGFLAENAKFSQICADHGIKFIGPTPDMINNMGDKITAKETMIKA 119 Query: 152 GLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLA 211 G+ + P + ++ +G P+ +K G G+ V E + A + A Sbjct: 120 GVPVVPGSGGL-LESLEQAKDLAKNHVGYPVILKATAGGGGEGMRVVWEESELERAYNTA 178 Query: 212 F------EFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDED 264 + + +E+ + + R IE V G+ E K ++E Sbjct: 179 KAEAAASFKNDGIYMEKFVEEPRHIEIQVAGDQYGNVCHLSER--DCSIQRRHQKLVEES 236 Query: 265 GAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGF 322 + E+ +K+ A A++A + + ++ + E+NT Sbjct: 237 -----PSPFMTDELREKMGAAAIKAASAINYESVGTIEFLVDKHRNFYFMEMNTRLQV 289 >gb|AAK97387.1|AF363615_1 (AF363615) D-alanine:D-alanine ligase 2 [Enterococcus gallinarum] Length = 343 Score = 218 bits (556), Expect = 5e-56 Identities = 91/352 (25%), Positives = 166/352 (46%), Gaps = 16/352 (4%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 + + ++ GG S E +VSL S I A+++ +LL + + +++ + ++ Sbjct: 1 MNIVVLAGGLSHERDVSLSSGGQIAMALEERGHRALLLDLYQGNNEKTFESAYSIQKQEE 60 Query: 64 PAHIALRPSATSLAQV---PGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + + ++ LI + D F +HG +GE+G LQ Sbjct: 61 NPYDYFVVENEPDIEKLIQKNSNQKNLIGKNVVELCLNADFCFIALHGGIGENGKLQAFF 120 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + + + GS S MDKD+ K+L++ + + + S Sbjct: 121 DIYGIRYSGSHYKGSLLAMDKDIAKQLMKLNDIPTPKWQLWEQGQEVYYS---------T 171 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P VKP + GSS+GV V ++EQ+ A+ A +++ KV++EQ I+GRE VLG+ Sbjct: 172 PCVVKPIDNGSSIGVEIVENKEQFFKALKKAEKYNSKVMIEQKIEGREFSVGVLGD---N 228 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 EI+ FY Y+ KY + + PA I+ ++ ++ + V + LG + +R Sbjct: 229 VLPAIEIIPQQGFYNYENKYQKGA-TEEITPADISSDLATRLSEMTVLVNKVLGLSIYSR 287 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 VD +T E ++ E N+LPG T S+ P+ +A G+ +++L ++EL+LE Sbjct: 288 VDYIVTKELDIYCIEANSLPGMTPTSLLPQEAEAIGISFSELCETIVELSLE 339 >ref|NP_349267.1| (NC_003030) Pyruvate carboxylase, PYKA [Clostridium acetobutylicum] gb|AAK80607.1|AE007763_6 (AE007763) Pyruvate carboxylase, PYKA [Clostridium acetobutylicum] Length = 1144 Score = 218 bits (555), Expect = 7e-56 Identities = 52/322 (16%), Positives = 99/322 (30%), Gaps = 23/322 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV--PGKHEHQ 86 + +R ++ + + + + Y + + Q P Sbjct: 7 RVLVANRGEIAIRIFRACHELGIRTVAIYSEEDKLALFRTKADESYLIGQNKGPVDAYLN 66 Query: 87 LIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKR 146 + + N VD I P +G L E+ A + F+G DK +K Sbjct: 67 IDEIINLALKKGVDAIHPG-YGFLSENSEFSRRCTEAGIEFIGPTGDMMDKLGDKINSKL 125 Query: 147 LLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAI 206 + AG+ P + + E G P+ VK A G G+ V EE Sbjct: 126 AAKAAGVKTIPG--VEKPIETEQQAIEFARTCGYPVMVKAAAGGGGRGMRIVEKEEDLIA 183 Query: 207 AVDLAF------EFDHKVIVEQGIKG-REIECAVLGNDNPQASTCGEIVLTSDFYAYDTK 259 A A + +E+ ++G + IE VLG+ E K Sbjct: 184 ACRSAKSEAKKAFGIEDIFIEKYLEGPKHIEVQVLGDKYGNIVHLYER--DCSVQRRHQK 241 Query: 260 YIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTL 319 I+ + +++ E +I A++ +++G ++ L E+N Sbjct: 242 VIE-----LTPAVSMSEEKRLEICEDALKIARSIGYRSAGTLEFLLDKHGNHYFIEMNPR 296 Query: 320 PGFTNISMYPKLWQASGLGYTD 341 + +G+ Sbjct: 297 VQVEHT----ITEMVTGIDIVQ 314 >ref|NP_389706.1| (NC_000964) similar to biotin carboxylase [Bacillus subtilis] pir||E69893 biotin carboxylase homolog yngH - Bacillus subtilis emb|CAA74216.1| (Y13917) yngH [Bacillus subtilis] emb|CAB13707.1| (Z99113) similar to biotin carboxylase [Bacillus subtilis] Length = 444 Score = 218 bits (555), Expect = 8e-56 Identities = 55/332 (16%), Positives = 117/332 (34%), Gaps = 23/332 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 + +R ++ + I + + + Y D H A + + + Sbjct: 1 MFTKVLIANRGEIAMRIIRTCSRLGIKTVAVYSEADKDAPHTKAATEAYLIGESRVSESY 60 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 I+ +G L E+ + N+ F+G A K + Sbjct: 61 LNIERIIKTAKKAKADAIHPGYGLLSENSRFAERCKQENIVFIGPSPDIIAKMGSKIEAR 120 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 + + AG+ + P ++ + + + S++G P+ +K + G +G+ +V +EE Sbjct: 121 KAMEAAGVPVVPGVSESLGD--IEAACRTASQIGYPVMLKASAGGGGIGMQRVENEEALK 178 Query: 206 IAVD------LAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A + F D + +E+ I+ R IE +L + + E Sbjct: 179 KAYEGNKKRAADFFGDGSMYIEKVIEHARHIEVQLLADQHGHTVHLFER--DCSVQRRHQ 236 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K I+E + E+ KI AV+A + +G ++ + + E+NT Sbjct: 237 KVIEE-----APSPFVDDELRMKIGQTAVKAAKAIGYTNAGTIEFIVDQKQNFYFLEMNT 291 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + P + +GL L+ + + +A Sbjct: 292 RLQVEH----PVTEEITGLD---LVEQQLRIA 316 >gb|AAC41643.1| (M64926) urea amidolyase [Saccharomyces cerevisiae] Length = 1835 Score = 218 bits (555), Expect = 9e-56 Identities = 58/331 (17%), Positives = 111/331 (33%), Gaps = 29/331 (8%) Query: 30 AIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSL-AQVPGKHEHQLI 88 + +R ++ + I + + + Y H+ + L + + Sbjct: 636 VLIANRGEIAVRIIKTLKKLGIRSVAVYSDPDKYSQHVTDADVSVPLHGTTAAQTYLDMN 695 Query: 89 DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLL 148 + I P +G L E+ A + FVG K +++ Sbjct: 696 KIIDAAKQTNAQAIIPG-YGFLSENADFSDACTSAGITFVGPSGDIIRGLGLKHSARQIA 754 Query: 149 RDAGLNIAPFI-TLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + AG+ + P +T +V ++L P+ VK G +G+ KV SEE Sbjct: 755 QKAGVPLVPGSLLITSVEEAK----KVAAELEYPVMVKSTAGGGGIGLQKVDSEEDIEHI 810 Query: 208 VD------LAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 + F D V +++ I+ R +E ++G+ +A GE + K Sbjct: 811 FETVKHQGETFFGDAGVFLKRFIENARHVEVQLMGDGFGKAIALGER--DCSLQRRNQKV 868 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEINTL 319 I+E + + +R A L V+ ++E E+NT Sbjct: 869 IEE-----TPAPNLPEKTRLALRKAAESLGSLLNYKCAGTVEFIYDEKKDEFYFLEVNTR 923 Query: 320 PGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + P +GL L+ +I +A Sbjct: 924 LQVEH----PITEMVTGLD---LVEWMIRIA 947 >gb|AAG37836.1|AF295372_1 (AF295372) pyruvate carboxylase [Danio rerio] Length = 1180 Score = 217 bits (554), Expect = 9e-56 Identities = 51/331 (15%), Positives = 98/331 (29%), Gaps = 23/331 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSL--AQVPGKHE 84 I + +R ++ + + + + Y H A + P Sbjct: 39 IKKVMVANRGEIAIRVFRACTELGIRTVAVYSEQDTGQMHRQKADEAYLIGRGLSPVAAY 98 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D VD I P +G L E A + F+G DK Sbjct: 99 LHIPDIIKVAKENNVDAIHPG-YGFLSERADFAQACAEAGVRFIGPSPEVVRKMGDKVEA 157 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + L AG+ + P + E P+ K A G G+ V + E+ Sbjct: 158 RALAIKAGVPVVPGTDAPISCLQE--AQEFAKTYDFPIIFKAAYGGGGRGMRVVRNYEEL 215 Query: 205 AIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A + + VE+ I+ R IE +LG+ E Sbjct: 216 EENYQRAYSEALAAFGNGALFVEKFIEKPRHIEVQILGDKYGNVIHLYER--DCSIQRRH 273 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ + A + + D++ +V + +G V+ + + E+N Sbjct: 274 QKVVE-----IAPAAHLDSHLRDRLTLDSVNLAKQVGYENAGTVEFLVDKHGKHYFIEVN 328 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 + + + + + R+ E Sbjct: 329 SRLQVEHTV----TEEITDVDLVHAQLRVCE 355 >gb|AAB92588.1| (AF038548) pyruvate carboxylase [Corynebacterium glutamicum] emb|CAA70739.1| (Y09548) pyruvate carboxylase [Corynebacterium glutamicum] Length = 1140 Score = 217 bits (554), Expect = 1e-55 Identities = 57/334 (17%), Positives = 107/334 (31%), Gaps = 24/334 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA--QVPGKH 83 + +R ++ + + + + Y H + A + P K Sbjct: 11 AFKKILVANRGEIAVRAFRAALETGAATVAIYPREDRGSFHRSFASEAVRIGTEGSPVKA 70 Query: 84 EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + + D I+P +G L E+ L + F+G DK Sbjct: 71 YLDIDEIIGAAKKVKADAIYPG-YGFLSENAQLARECAENGITFIGPTPEVLDLTGDKSR 129 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 + AGL + T +++ + P+FVK G G+ V S ++ Sbjct: 130 AVTAAKKAGLPVLAEST---PSKNIDEIVKSAEGQTYPIFVKAVAGGGGRGMRFVASPDE 186 Query: 204 YAIAVD------LAFEFDHKVIVEQG-IKGREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 A D V VE+ I + IE +LG+ + E Sbjct: 187 LRKLATEASREAEAAFGDGAVYVERAVINPQHIEVQILGDHTGEVVHLYER--DCSLQRR 244 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEI 316 K ++ + + PE+ D+I A AV+ +++G G V+ + + V E+ Sbjct: 245 HQKVVE-----IAPAQHLDPELRDRICADAVKFCRSIGYQGAGTVEFLVDEKGNHVFIEM 299 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 N + + + + RL A Sbjct: 300 NPRIQVEHTV----TEEVTEVDLVKAQMRLAAGA 329 >ref|NP_103112.1| (NC_002678) D-alanyl-D-alanine ligase [Mesorhizobium loti] dbj|BAB48898.1| (AP002997) D-alanyl-D-alanine ligase [Mesorhizobium loti] Length = 308 Score = 217 bits (554), Expect = 1e-55 Identities = 103/357 (28%), Positives = 169/357 (46%), Gaps = 60/357 (16%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+ V ++ GG S+E VSL S K DA++ + V + + + +++ Sbjct: 1 MKSKHVAVLLGGFSSERPVSLSSGKACADALENEGYQVTRVDVGRDVGSVLAE------- 53 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 DV F +HG GEDG++QG+L Sbjct: 54 ------------------------------------LKPDVAFNALHGPFGEDGTIQGIL 77 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 +P+ S VLASA M+K+ K++++ G+ +A R N + Sbjct: 78 EYLGIPYTHSGVLASALAMNKEQAKKIVKTVGVPVAESKVANRFAIQNKHPMK------P 131 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAV--DLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 P +KP N+GSS GV V+ + + V +++ V+VE+ I GRE+ CAV+G+ Sbjct: 132 PYVIKPVNEGSSFGVVIVSEGQSHPPQVVGSSEWKYGDTVMVERYIHGRELTCAVMGD-- 189 Query: 239 PQASTCGEIVLT-SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 A EI+ T FY YD+KY+ G+K PA ++P I KI+ +A++A+Q +GC G Sbjct: 190 -VALGVCEIIPTGHSFYDYDSKYVAG-GSKHECPAKVSPNIYQKIQTLALKAHQAVGCRG 247 Query: 298 MARVDVFLT----PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 ++R D EVV E+NT PG T S+ P++ +G + +L++ ++E A Sbjct: 248 VSRSDFRYDDRHSENGEVVWLEVNTQPGMTPTSLVPEIAAHAGHSFGELLSWMVEDA 304 >ref|NP_009777.1| (NC_001134) converts pyruvate to oxaloacetate; Pyc2p [Saccharomyces cerevisiae] sp|P32327|PYC2_YEAST PYRUVATE CARBOXYLASE 2 (PYRUVIC CARBOXYLASE 2) (PCB 2) pir||S46094 pyruvate carboxylase (EC 6.4.1.1) 2 - yeast (Saccharomyces cerevisiae) emb|CAA85182.1| (Z36087) ORF YBR218c [Saccharomyces cerevisiae] gb|AAC49147.1| (U35647) pyruvate carboxylase 2 [Saccharomyces cerevisiae] Length = 1180 Score = 217 bits (554), Expect = 1e-55 Identities = 49/333 (14%), Positives = 100/333 (29%), Gaps = 25/333 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV----PGKHE 84 + +R ++ + + + + Y H A + + P Sbjct: 22 KILVANRGEIPIRIFRSAHELSMRTIAIYSHEDRLSMHRLKADEAYVIGEEGQYTPVGAY 81 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + VD I P +G L E+ + A + ++G + DK Sbjct: 82 LAMDEIIEIAKKHKVDFIHPG-YGFLSENSEFADKVVKAGITWIGPPAEVIDSVGDKVSA 140 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + L A + P + ++ G P+ +K A G G+ V + Sbjct: 141 RHLAARANVPTVPGTPGPI--ETVQEALDFVNEYGYPVIIKAAFGGGGRGMRVVREGDDV 198 Query: 205 AIAVDLA------FEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A A + VE+ + + IE +L +++ E Sbjct: 199 ADAFQRATSEARTAFGNGTCFVERFLDKPKHIEVQLLADNHGNVVHLFER--DCSVQRRH 256 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ V + E+ D I AV+ + G + + +N EIN Sbjct: 257 QKVVE-----VAPAKTLPREVRDAILTDAVKLAKVCGYRNAGTAEFLVDNQNRHYFIEIN 311 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + + +G+ ++ A Sbjct: 312 PRIQVEHT----ITEEITGIDIVSAQIQIAAGA 340 >ref|NP_386277.1| (NC_003047) PROBABLE D-ALANINE--D-ALANINE LIGASE B PROTEIN [Sinorhizobium meliloti] emb|CAC46750.1| (AL591789) PROBABLE D-ALANINE--D-ALANINE LIGASE B PROTEIN [Sinorhizobium meliloti] Length = 308 Score = 217 bits (553), Expect = 1e-55 Identities = 106/357 (29%), Positives = 168/357 (46%), Gaps = 60/357 (16%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M V ++ GG S+E VSL S DA++ + V + + + + + Sbjct: 1 MSSKHVAVLLGGFSSERPVSLSSGTACADALEAEGYRVTRVDVGRDVAAVLQE------- 53 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 DV+F +HG GEDG++QG+L Sbjct: 54 ------------------------------------LRPDVVFNALHGPFGEDGTIQGIL 77 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 +P+ S VLASA MDKD K + + AG+ +A + + R + N + Sbjct: 78 EYLEIPYTHSGVLASALAMDKDQAKHVAKAAGIPVAEALVMDRRSFGNQHPMK------P 131 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAV--DLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 P VKP +GSS GV V ++ + V + + +V+VE+ I GRE C V+G+ Sbjct: 132 PYVVKPVREGSSFGVVIVKEDQSHPPQVITSSEWRYGDRVMVERYIAGREFTCGVMGD-- 189 Query: 239 PQASTCGEIVLT-SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 A EI+ FY YD+KY+ G+K V+PA I+P I KI+ +A++A+Q +GC G Sbjct: 190 -VALGVTEIIPQGHAFYDYDSKYVKG-GSKHVIPAQISPNIYQKIQTLALKAHQAIGCRG 247 Query: 298 MARVDVFL----TPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 ++R D E E++ EINT PG T S+ P++ Q +GL + + + ++E A Sbjct: 248 VSRSDFRFDDRGDGEGELIWLEINTQPGMTPTSLVPEMAQHAGLQFGEFLRWMVEDA 304 >ref|NP_214048.1| (NC_000918) pyruvate carboxylase n-terminal domain [Aquifex aeolicus] pir||A70432 biotin carboxylase (EC 6.3.4.14) [similarity] - Aquifex aeolicus gb|AAC07446.1| (AE000744) pyruvate carboxylase n-terminal domain [Aquifex aeolicus] Length = 472 Score = 217 bits (553), Expect = 1e-55 Identities = 55/329 (16%), Positives = 111/329 (33%), Gaps = 24/329 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ + I + + + Y H+ L A + P Sbjct: 4 KVLVANRGEIAVRIIRACKELGIPTVAIYNEVESTARHVKLADEAYMIGTDPLDTYLNKQ 63 Query: 89 DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLL 148 N D I P +G L E+ M A + F+G DK +K ++ Sbjct: 64 RIINLALEVGADAIHPG-YGFLAENAEFAKMCEEAGITFIGPHWKVIELMGDKARSKEVM 122 Query: 149 RDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV 208 + AG+ + P + ++G P+ +K G G+ +EE+ Sbjct: 123 KKAGVPVVPGSDGVLK--SLEEAKALAREIGYPVLLKATAGGGGRGIRICRNEEELVKNY 180 Query: 209 DLA------FEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYI 261 + A +++E+ I+ + IE VLG+ + GE + K Sbjct: 181 EQASREAEKAFGRGDLLLEKFIENPKHIEYQVLGDKHGNVIHLGER--DCSIQRRNQK-- 236 Query: 262 DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG 321 ++ + PE + I +A + +G ++ E + E+NT Sbjct: 237 ---LVEIAPSLILTPEKREYYGNIVTKAAKEIGYYNAGTMEFIADQEGNLYFIEMNTRIQ 293 Query: 322 FTNISMYPKLWQASGLGYTDLITRLIELA 350 + P +G+ ++ I++A Sbjct: 294 VEH----PVSEMVTGID---IVKWQIKIA 315 >ref|NP_533976.1| (NC_003305) 3-methylcrotonyl-CoA carboxylase alpha subunit [Agrobacterium tumefaciens str. C58 (U. Washington)] gb|AAL44292.1| (AE009278) 3-methylcrotonyl-CoA carboxylase alpha subunit [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 663 Score = 217 bits (553), Expect = 1e-55 Identities = 59/333 (17%), Positives = 113/333 (33%), Gaps = 26/333 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 + +R ++ I + + Y D H+AL A ++ P + + Sbjct: 1 MFSKILIANRGEIACRIIRTAASMGIRTVAVYSDADRDAMHVALADEAIAIGPAPARASY 60 Query: 86 -QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + I P +G L E+ A L F+G A A K Sbjct: 61 LDGEKIIAAAKASGAEAIHPG-YGFLSENAGFAEACASAGLVFIGPPPEAIRAMGGKSEA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K L+ AG+ I P + A K+G P+ +K + G G+ V + + Sbjct: 120 KALMATAGVPIVPGY--HGDEQAEKRLASEADKIGYPVLLKASAGGGGKGMRVVRQKHDF 177 Query: 205 AIAV------DLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A + LA + ++++E+ ++ R +E V + + + E Sbjct: 178 AAELAGAKREALAAFGNDRMLIEKYLERPRHVEVQVFADGHGNCVSLFER--DCSIQRRH 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E + ++ ++ A A + + G ++ L P E+N Sbjct: 236 QKVIEE-----APAPGLPDDLRQRMYDAATAAARAIDYRGAGTIEFLLDPSG-FYFMEMN 289 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 T + P +GL L+ + +A Sbjct: 290 TRLQVEH----PVTEYITGLD---LVEWQLRVA 315 >ref|NP_232019.1| (NC_002505) carbamoyl-phosphate synthase, large subunit [Vibrio cholerae] pir||D82083 carbamoyl-phosphate synthase, large chain VC2389 [imported] - Vibrio cholerae (group O1 strain N16961) gb|AAF95532.1| (AE004309) carbamoyl-phosphate synthase, large subunit [Vibrio cholerae] Length = 1076 Score = 217 bits (552), Expect = 2e-55 Identities = 59/369 (15%), Positives = 128/369 (33%), Gaps = 54/369 (14%) Query: 2 EKLRVGIVFGGKSA-----EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 +K ++ ++ GG + E + A A+ + ++ +++ + + D S Sbjct: 557 DKDKIMVLGGGPNRIGQGIEFDYCCVHA---ALALREDGYETIMVNCNPETVSTDYDTS- 612 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + LA V + +I GQ L Sbjct: 613 ------DRLYFEPVTLEDVLAIVRVEKPKGVIVQYGGQTPLK-----------------L 649 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L A +P +G+ A D++ ++ ++ GL T+T + E Sbjct: 650 ARALEAAGVPVIGTSPDAIDRAEDRERFQQAVQRLGLKQPDNATVTAIEQA----IEKSR 705 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGI-KGREIECAV 233 ++G PL V+P+ + V E+ + A + V++++ + E++ Sbjct: 706 EIGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDDATEVDVDA 765 Query: 234 LGNDN-PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + + E + + ++ D A + ++ EI DK+R + Sbjct: 766 ICDGERVVIGGIMEHIEQAGVHS-------GDSACSLPAYTLSQEIQDKMREQVEKLAFE 818 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 LG G+ + + +NEV + E+N T P + +A+G + R++ + Sbjct: 819 LGVRGLMNIQFAV-KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAARVM--VGQ 871 Query: 353 RHAADNALK 361 K Sbjct: 872 TLEQQGFTK 880 Score = 153 bits (387), Expect = 2e-36 Identities = 45/355 (12%), Positives = 111/355 (30%), Gaps = 52/355 (14%) Query: 6 VGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 + I+ G++ E + S A+ + + V+L+ + + ++ Sbjct: 10 ILILGAGPIVIGQACEFDYS---GAQACKALREEGYRVILVNSNPATIMTDPEMADATYI 66 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ--- 117 + D I P + G + +L Sbjct: 67 E----------------------PIHWEVVRKIIEKERPDAILPTMGGQTALNCALALEK 104 Query: 118 -GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 G+L + +G+ A D+ + ++ GL T +V Sbjct: 105 HGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADTAKSMEEAY----KVLD 160 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKG-REIECAV 233 +G P ++P+ G + E++ + ++++++ + G +E E V Sbjct: 161 MVGFPCIIRPSFTMGGSGGGIAYNREEFEEICTRGLDLSPTNELLIDESLIGWKEYEMEV 220 Query: 234 LGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 + + N I + + + D V + + +R ++ + + Sbjct: 221 VRDKNDNCIIVCAI----ENFDPMGIHT-GDSITVAPAQTLTDKEYQIMRNASLAVLREI 275 Query: 294 GC-AGMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 G G + V + + +VI E+N ++ +A+G + +L Sbjct: 276 GVETGGSNVQFGINPKDGRMVIIEMNPRVSRSSA----LASKATGFPIAKVAAKL 326 >emb|CAB87214.1| (AL163641) acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces coelicolor A3(2)] Length = 646 Score = 217 bits (552), Expect = 2e-55 Identities = 63/331 (19%), Positives = 111/331 (33%), Gaps = 27/331 (8%) Query: 30 AIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHEHQLI 88 + +R ++ + I V + + D H+ A + P + + Sbjct: 5 VLVANRGEIAVRVIRTLRSMGVRSVAVFSDADADARHVREADDAVRIGPAPATESYLSVE 64 Query: 89 DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLL 148 + P +G L E+ A L F+G A A DK K + Sbjct: 65 RLLAAAARTGAQAVHPG-YGFLAENAGFARACEEAGLVFIGPSADAIALMGDKIRAKETV 123 Query: 149 RDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV 208 R AG+ + P + + A+ ++G P+ +KP+ G G+ V A + Sbjct: 124 RAAGVPVVPGSSGSGLTDEQ--LADAAREIGTPVLLKPSAGGGGKGMRLVRDTAVLADEI 181 Query: 209 DLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYI 261 A D ++VE+ I R IE VL + + GE K I Sbjct: 182 AAARREARASFGDDTLLVERWIDRPRHIEIQVLADGHGGVVHLGER--ECSLQRRHQKVI 239 Query: 262 DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPEN--EVVINEINTL 319 +E + + AVQA ++ G G V+ + + + E+NT Sbjct: 240 EE-----APSVLLDEATRAAMGEAAVQAARSCGYRGAGTVEFIVPGSDPSQYYFMEMNTR 294 Query: 320 PGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + P +GL L+ + +A Sbjct: 295 LQVEH----PVTELVTGLD---LVEWQLRVA 318 >ref|NP_047031.1| (NC_001905) PCACA; L549.5 [Leishmania major] pir||T02793 propionyl CoA carboxylase (alpha chain) PCACA [imported] - Leishmania major (strain Friedlin) gb|AAC24617.1| (AE001274) PCACA; L549.5 [Leishmania major] Length = 665 Score = 217 bits (552), Expect = 2e-55 Identities = 55/334 (16%), Positives = 115/334 (33%), Gaps = 25/334 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQ-L 87 + +R ++ + + + + Y + H+ + + + + Sbjct: 8 KVLVANRGEIACRVMATCQRLGIKTVAVYSTADEQAKHVKVADEGVCIGPPASVESYLCI 67 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + + P +G L E+G Q L N+ FVG D + A DK +KRL Sbjct: 68 DKIVDACKKTGAQAVHPG-YGFLSENGEFQAALHKNNIIFVGPDAHSIEAMGDKIESKRL 126 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 AG+ P + + ++G P+ +K + G G+ ++ Q Sbjct: 127 AHSAGVTCIPGFIGEVK--THEDVLKFAREVGYPVMIKASGGGGGKGMRVAYNDSQCVEY 184 Query: 208 VDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 D+ A K++VE+ I+ R IE V+ + E + K Sbjct: 185 YDMCREEAKAAFNSDKMLVEKFIENPRHIEIQVIADRRGNTLYLPER--ECSIQRRNQKV 242 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 I+E + + + AV + + V+ + P+ + E+NT Sbjct: 243 IEE-----APSVLLDAKTRKAMGEEAVAMARAVQYVSAGTVENVVNPQKQFYFLEMNTRL 297 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 + P + +G+ L+ +++ A + Sbjct: 298 QVEH----PITEEITGID---LVEQMLRAAADLP 324 >ref|NP_250702.1| (NC_002516) probable acyl-CoA carboxylase alpha chain [Pseudomonas aeruginosa] pir||A83395 probable acyl-CoA carboxylase alpha chain PA2012 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG05400.1|AE004627_8 (AE004627) probable acyl-CoA carboxylase alpha chain [Pseudomonas aeruginosa] Length = 655 Score = 217 bits (552), Expect = 2e-55 Identities = 64/335 (19%), Positives = 114/335 (33%), Gaps = 25/335 (7%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV-PGKH 83 ++I + +R ++ + + + + H+A A L P Sbjct: 6 RSIQRLLVANRGEIACRVMRSARALGIGSVAVHSDIDRHARHVAEADIAVDLGGAKPADS 65 Query: 84 EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + I P +G L E+ A L F+G A A K Sbjct: 66 YLRGDRIIAAALASGAQAIHPG-YGFLSENADFARACEEAGLLFLGPPAAAIDAMGSKSA 124 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 K L+ +AG+ + P + +F ++G P+ +K A G G+ V E + Sbjct: 125 AKALMEEAGVPLVPGY--HGEAQDLETFRREAGRIGYPVLLKAAAGGGGKGMKVVEREAE 182 Query: 204 YAIAVDL------AFEFDHKVIVEQG-IKGREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 A A+ A D +++VE+ +K R +E V + + E Sbjct: 183 LAEALSSAQREAKAAFGDARMLVEKYLLKPRHVEIQVFADRHGHCLYLNER--DCSIQRR 240 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEI 316 K ++E + E+ + AV+A Q +G G V+ L + E+ Sbjct: 241 HQKVVEE-----APAPGLGAELRRAMGEAAVRAAQAIGYVGAGTVEFLLDERGQFFFMEM 295 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 NT + P +GL L+ I +A Sbjct: 296 NTRLQVEH----PVTEAITGLD---LVAWQIRVAR 323 >ref|NP_540842.1| (NC_003317) acetyl-CoA carboxylase alpha chain / propionyl-CoA carboxylase alpha chain [Brucella melitensis] gb|AAL53106.1| (AE009626) acetyl-CoA carboxylase alpha chain / propionyl-CoA carboxylase alpha chain [Brucella melitensis] Length = 678 Score = 216 bits (551), Expect = 2e-55 Identities = 63/339 (18%), Positives = 116/339 (33%), Gaps = 30/339 (8%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHE 84 + +R ++ I + ++ + Y H+ + A + Sbjct: 23 VMFQKILIANRGEIACRVIRTARKLGIATVAIYSDADARALHVEMADEAVRVGPAASAQS 82 Query: 85 H-QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + + + I P +G L E+ + + A L F+G A A KD Sbjct: 83 YLNVDAIIKAAKETGAEAIHPG-YGFLSENPAFVDAVEEAGLIFIGPSAKAIRAMGLKDA 141 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 K L+ AG+ + P + ++ P+ +K G G+ +V S Sbjct: 142 AKALMEKAGVPVVPGYHGDNQDGA--FLKSEADRITYPVLIKARAGGGGKGMRRVDSAAD 199 Query: 204 YAIAVDLAFE------FDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 +A A++ A D V+VE+ + K R IE V G+++ A E Sbjct: 200 FAAALESARREAEASFGDGAVLVEKYMAKPRHIEVQVFGDNHGNAVHLFER--DCSLQRR 257 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE-----NEV 311 K I+E + E+ + AV+A T+G +G V+ + Sbjct: 258 HQKVIEE-----APAPGMTEEMRAAMGEAAVKAALTIGYSGAGTVEFIADVSEGLRPDRF 312 Query: 312 VINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 E+NT + P +GL L+ + +A Sbjct: 313 FFMEMNTRLQVEH----PVTEAITGLD---LVEWQLRVA 344 >ref|NP_437243.1| (NC_003078) putative methylcrotonoyl-CoA carboxylase biotinylated subunit protein [Sinorhizobium meliloti] emb|CAC49103.1| (AL603644) putative methylcrotonoyl-CoA carboxylase biotinylated subunit protein [Sinorhizobium meliloti] Length = 662 Score = 216 bits (551), Expect = 2e-55 Identities = 65/338 (19%), Positives = 115/338 (33%), Gaps = 30/338 (8%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 + +R ++ I + + + Y D H+AL A + P + Sbjct: 1 MFSKLLIANRGEIACRIIRTARRLGIRTVAVYSDADGDALHVALADEAIRIGGAPAAESY 60 Query: 86 QL-IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 I P +G L E+ + A + FVG A A KD Sbjct: 61 LASAPIVQAARSVGAQAIHPG-YGFLSENADFAEAVAEAGMIFVGPPPAAIRAMGLKDAA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K L+ +G+ + P + A+ ++G P+ +K G G+ +V +E + Sbjct: 120 KALMERSGVPVVPGY--HGEEQDASFLADRAREIGYPVLIKARAGGGGKGMRRVERQEDF 177 Query: 205 AIAVDLAFE------FDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A++ A D V++E+ + K R IE V G+ + E Sbjct: 178 GPALEAARREAESAFGDGSVLLERYLTKPRHIEMQVFGDRHGNIVHLFER--DCSLQRRH 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENE-----VV 312 K I+E + E+ + AV+A Q +G G V+ N Sbjct: 236 QKVIEE-----APAPGMTAEVRRAMGDAAVRAAQAIGYVGAGTVEFIADVTNGLWPDHFY 290 Query: 313 INEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 E+NT + P +G+ L+ + +A Sbjct: 291 FMEMNTRLQVEH----PVTEAITGID---LVEWQLRVA 321 >pir||T43735 pyruvate carboxylase (EC 6.4.1.1) [validated] - yellow fever mosquito gb|AAB64306.1| (L36530) pyruvate carboxylase [Aedes aegypti] Length = 1195 Score = 216 bits (551), Expect = 2e-55 Identities = 50/321 (15%), Positives = 97/321 (29%), Gaps = 23/321 (7%) Query: 30 AIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSL--AQVPGKHEHQL 87 + +R ++ + + + + Y H + + P + + Sbjct: 41 VLVANRGEIAIRVFRACNELGIRSVAVYSEQDKMHMHRQKADESYMVGKGLAPVEAYLSI 100 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + VD + P +G L E + A L F+G DK ++ Sbjct: 101 PEIIRVCKENDVDAVHPG-YGFLSERSDFAQAVIDAGLRFIGPSPKVVQQMGDKVAARKA 159 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 +AG+ I P + K GLP+ K A G G+ V E+ Sbjct: 160 AIEAGVPIVPGTDGPVT--TKEEALDFCKKHGLPVIFKAAYGGGGRGMRVVRKMEEVEDN 217 Query: 208 VDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A + + +E+ I+ R IE +LG+ E K Sbjct: 218 FQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYER--DCSVQRRHQKV 275 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++ + + E+ DK+ AV+ + +G V+ E+N Sbjct: 276 VE-----IAPAPRLPREVRDKMTEYAVKLAKHVGYENAGTVEFLCDESGNFYFIEVNARL 330 Query: 321 GFTNISMYPKLWQASGLGYTD 341 + + +G+ Sbjct: 331 QVEHTV----TEEITGIDLVQ 347 >emb|CAA42544.1| (X59890) pyruvate carboxylase [Saccharomyces cerevisiae] Length = 1185 Score = 216 bits (551), Expect = 3e-55 Identities = 49/333 (14%), Positives = 98/333 (28%), Gaps = 25/333 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV----PGKHE 84 + +R ++ + + + + Y H A + + P Sbjct: 22 KILVANRGEIPIRIFRSAHELSMRTIAIYSHEDRLSMHRLKADEAYVIGEEGQYTPVGAY 81 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + VD I P +G L E+ + A + ++G + DK Sbjct: 82 LAMDEIIEIAKKHKVDFIHPG-YGFLSENSEFADKVVKAGITWIGPPAEVIESVGDKVSA 140 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + L A + P + ++ G P+ +K A G G+ V + Sbjct: 141 RHLAARANVPTVPGTPGPI--ETVQEALDFVNEYGYPVIIKAAFGGGGRGMRVVREGDDV 198 Query: 205 AIAVDLA------FEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A A + VE+ + + IE +L + + E Sbjct: 199 ADAFQRATSEARTAFGNGTCFVERFLDKPKHIEVQLLADKHGNVVHLFER--DCSVQRRH 256 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ V E+ D I AV+ + G + + +N EIN Sbjct: 257 QKVVE-----VAPAKTFPREVRDAILTDAVKLAKVCGYRNAGTAEFLVDNQNRHYFIEIN 311 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + + +G+ ++ A Sbjct: 312 PRIQVEHT----ITEEITGIDIVSAQIQIAAGA 340 >ref|NP_217017.1| (NC_000962) accA1 [Mycobacterium tuberculosis H37Rv] ref|NP_337066.1| (NC_002755) acetyl/propionyl-CoA carboxylase, alpha subunit [Mycobacterium tuberculosis CDC1551] sp|P46401|BCCA_MYCTU ACETYL-/PROPIONYL-COENZYME A CARBOXYLASE ALPHA CHAIN [INCLUDES: BIOTIN CARBOXYLASE ; BIOTIN CARBOXYL CARRIER PROTEIN (BCCP)] pir||B55579 biotin carboxyl carrier protein - Mycobacterium tuberculosis emb|CAA79609.1| (Z19549) biotin carboxyl carrier protein [Mycobacterium tuberculosis] emb|CAB08919.1| (Z95556) accA1 [Mycobacterium tuberculosis H37Rv] gb|AAK46880.1| (AE007094) acetyl/propionyl-CoA carboxylase, alpha subunit [Mycobacterium tuberculosis CDC1551] Length = 654 Score = 216 bits (551), Expect = 3e-55 Identities = 57/331 (17%), Positives = 114/331 (34%), Gaps = 27/331 (8%) Query: 30 AIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHEHQLI 88 + +R ++ + I + + + Y D H+ +A L P + + Sbjct: 5 VLVANRGEIAVRVIRTLRRLGIRSVAVYSDPDVDARHVLEADAAVRLGPAPARESYLDIG 64 Query: 89 DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLL 148 + I P +G L E+ A + F+G A DK K + Sbjct: 65 KVLDAAARTGAQAIHPG-YGFLAENADFAAACERARVVFLGPPARAIEVMGDKIAAKNAV 123 Query: 149 RDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV 208 + + P + RA + + +++G P+ +KP+ G G+ V + A+ Sbjct: 124 AAFDVPVVPGVA--RAGLTDDALVTAAAEVGYPVLIKPSAGGGGKGMRLVQDPARLPEAL 181 Query: 209 DLAFE------FDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYI 261 A D + +E+ + + R IE VL + + GE K I Sbjct: 182 VSARREAMSSFGDDTLFLERFVLRPRHIEVQVLADAHGNVVHLGER--ECSLQRRHQKVI 239 Query: 262 DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE--NEVVINEINTL 319 +E + P+ ++I A + + G V+ ++ + +E E+NT Sbjct: 240 EE-----APSPLLDPQTRERIGVAACNTARCVDYVGAGTVEFIVSAQRPDEFFFMEMNTR 294 Query: 320 PGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + P +GL L+ + + Sbjct: 295 LQVEH----PVTEAITGLD---LVEWQLRVG 318 >ref|NP_420982.1| (NC_002696) propionyl-CoA carboxylase, alpha subunit [Caulobacter crescentus] gb|AAK24150.1| (AE005890) propionyl-CoA carboxylase, alpha subunit [Caulobacter crescentus] Length = 669 Score = 216 bits (550), Expect = 3e-55 Identities = 52/334 (15%), Positives = 108/334 (31%), Gaps = 25/334 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 + +R ++ + I + + Y + + + P + Sbjct: 1 MFSKILIANRGEIAVRVIKTCRRLGIKTVVVYSDADAGSLAVEMADETVHIGASPANQSY 60 Query: 86 QL-IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + P G L E+ + F+G + A +A DK + Sbjct: 61 LVADKIIAACKQTGAQAVHPGF-GFLSENAGFAQRCADEGIVFIGPNPGAISAMGDKIES 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K+ + AG++ P A+ ++ ++G P+ +K + G G+ + + Sbjct: 120 KKFAQAAGVSCVPGHIGEIADTAE--AVKISEEIGYPVMIKASAGGGGKGIRVAWTRKDV 177 Query: 205 AI------AVDLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A D ++ +E+ I+ R IE VLG+ + E + Sbjct: 178 EEGFPAVRAEAKASFGDDRIFIEKFIESPRHIEIQVLGDKHGNVVHLFER--ECSIQRRN 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E + + + A AV + + V+ + E+N Sbjct: 236 QKVIEE-----APSPLLDEATRNAMGAQAVALAKAVNYDSAGTVEFVAGQDKSFFFLEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 T + P +GL L+ ++I A Sbjct: 291 TRLQVEH----PVTELITGLD---LVEQMIRSAY 317 >gb|AAA34843.1| (J03889) pyruvate carboxylase (EC 6.4.1.1) [Saccharomyces cerevisiae] Length = 1178 Score = 216 bits (550), Expect = 3e-55 Identities = 49/323 (15%), Positives = 99/323 (30%), Gaps = 25/323 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV----PGKHE 84 + +R ++ + + + + Y H A + +V P Sbjct: 21 KILVANRGEIPIRIFRTAHELSMQTVAIYSHEDRLSTHKQKADEAYVIGEVGQYTPVGAY 80 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + VD I P +G L E+ + A + ++G + DK Sbjct: 81 LAIDEIISIAQKHQVDFIHPG-YGFLSENSEFADKVVKAGITWIGPPAEVIDSVGDKVSA 139 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + L A + P + ++ G P+ +K A G G+ V + Sbjct: 140 RNLAAKANVPTVPGTPGPI--ETVEEALDFVNEYGYPVIIKAAFGGGGRGMRVVREGDDV 197 Query: 205 AIAVDLA------FEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A A + VE+ + + IE +L +++ E Sbjct: 198 ADAFQRATSEARTAFGNGTCFVERFLDKPKHIEVQLLADNHGNVVHLFER--DCSVQRRH 255 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ V + E+ D I AV+ + G + + +N EIN Sbjct: 256 QKVVE-----VAPAKTLPREVRDAILTDAVKLAKECGYRNAGTAEFLVDNQNRHYFIEIN 310 Query: 318 TLPGFTNISMYPKLWQASGLGYT 340 + + +G+ Sbjct: 311 PRIQVEHT----ITEEITGIDIV 329 >gb|AAD34740.1| (AF132152) unknown [Drosophila melanogaster] gb|AAF58885.1| (AE003831) BcDNA:GH06348 gene product [alt 2] [Drosophila melanogaster] gb|AAF58886.1| (AE003831) BcDNA:GH06348 gene product [alt 3] [Drosophila melanogaster] gb|AAF58887.1| (AE003831) BcDNA:GH06348 gene product [alt 4] [Drosophila melanogaster] Length = 1181 Score = 216 bits (550), Expect = 3e-55 Identities = 52/321 (16%), Positives = 96/321 (29%), Gaps = 23/321 (7%) Query: 30 AIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSL--AQVPGKHEHQL 87 + +R ++ + + + + Y H + + P + + Sbjct: 42 VLVANRGEIAIRVFRACTELGIKSVAVYSEQDKMHMHRQKADESYIVGKGLPPVEAYLNI 101 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + VD + P +G L E + A L F+G DK + Sbjct: 102 PELIRVCKENDVDAVHPG-YGFLSERSDFAQAVIDAGLRFIGPSPEVVQKMGDKVAARVA 160 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 +AG+ I P E K GLP+ K A G G+ V E + Sbjct: 161 AIEAGVPIVPGTDGPVT--TKEEALEFCKKHGLPVIFKAAYGGGGRGMRVVRKMEDVEES 218 Query: 208 VDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A + + +E+ I+ R IE +LG+ E K Sbjct: 219 FQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYER--DCSVQRRHQKV 276 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++ + + EI DK+ AV+ + +G V+ E+N Sbjct: 277 VE-----IAPAPRLPIEIRDKMTEAAVRLARHVGYENAGTVEFLCDESGNFYFIEVNARL 331 Query: 321 GFTNISMYPKLWQASGLGYTD 341 + + +G+ Sbjct: 332 QVEHTV----TEEITGIDLVQ 348 >ref|NP_011453.1| (NC_001139) converts pyruvate to oxaloacetate; Pyc1p [Saccharomyces cerevisiae] sp|P11154|PYC1_YEAST PYRUVATE CARBOXYLASE 1 (PYRUVIC CARBOXYLASE 1) (PCB 1) pir||QYBYP pyruvate carboxylase (EC 6.4.1.1) 1 [validated] - yeast (Saccharomyces cerevisiae) emb|CAA96765.1| (Z72584) ORF YGL062w [Saccharomyces cerevisiae] Length = 1178 Score = 216 bits (550), Expect = 3e-55 Identities = 49/323 (15%), Positives = 99/323 (30%), Gaps = 25/323 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV----PGKHE 84 + +R ++ + + + + Y H A + +V P Sbjct: 21 KILVANRGEIPIRIFRTAHELSMQTVAIYSHEDRLSTHKQKADEAYVIGEVGQYTPVGAY 80 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + VD I P +G L E+ + A + ++G + DK Sbjct: 81 LAIDEIISIAQKHQVDFIHPG-YGFLSENSEFADKVVKAGITWIGPPAEVIDSVGDKVSA 139 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + L A + P + ++ G P+ +K A G G+ V + Sbjct: 140 RNLAAKANVPTVPGTPGPI--ETVEEALDFVNEYGYPVIIKAAFGGGGRGMRVVREGDDV 197 Query: 205 AIAVDLA------FEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A A + VE+ + + IE +L +++ E Sbjct: 198 ADAFQRATSEARTAFGNGTCFVERFLDKPKHIEVQLLADNHGNVVHLFER--DCSVQRRH 255 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ V + E+ D I AV+ + G + + +N EIN Sbjct: 256 QKVVE-----VAPAKTLPREVRDAILTDAVKLAKECGYRNAGTAEFLVDNQNRHYFIEIN 310 Query: 318 TLPGFTNISMYPKLWQASGLGYT 340 + + +G+ Sbjct: 311 PRIQVEHT----ITEEITGIDIV 329 >ref|NP_518386.1| (NC_003295) PROBABLE ACYL-COA CARBOXYLASE ALPHA CHAIN PROTEIN [Ralstonia solanacearum] emb|CAD13793.1| (AL646058) PROBABLE ACYL-COA CARBOXYLASE ALPHA CHAIN PROTEIN [Ralstonia solanacearum] Length = 712 Score = 215 bits (549), Expect = 4e-55 Identities = 59/333 (17%), Positives = 109/333 (32%), Gaps = 25/333 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 + +R ++ + + + Y D H+A A + + + + Sbjct: 38 MFTKLLIANRGEIACRVAATCRRLGIRTVAVYSDADVDARHVAACDEAIHIGEPAARDSY 97 Query: 86 Q-LIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 I P +G L E+ + A L FVG A A K Sbjct: 98 LRADRILEAARATGAQAIHPG-YGFLSENEAFARACSEAGLVFVGPPASAIEAMGSKSAA 156 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K L+ AG+ + P + ++G P+ +K + G G+ V + E + Sbjct: 157 KALMETAGVPLVPGYHGDNQDAA--FLRAQADRIGYPVLIKASAGGGGKGMRVVETGEAF 214 Query: 205 AIAVDLAFE------FDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A+ D +V++E+ + + R IE V + A E Sbjct: 215 AAALASVKREASSSFGDDRVLIEKYLTRPRHIEIQVFADGFGDAVYLFER--DCSVQRRH 272 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E + PE + AV A + +G G V+ + + E+N Sbjct: 273 QKVLEE-----APAPGMTPERRRAMGEAAVAAARAVGYVGAGTVEFIVDEDGTFYFMEMN 327 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 T + P +G L+ + +A Sbjct: 328 TRLQVEH----PVTEMITGED---LVEWQLRVA 353 >gb|AAG22289.1| (AE003831) BcDNA:GH06348 gene product [alt 1] [Drosophila melanogaster] Length = 1196 Score = 215 bits (548), Expect = 5e-55 Identities = 52/321 (16%), Positives = 96/321 (29%), Gaps = 23/321 (7%) Query: 30 AIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSL--AQVPGKHEHQL 87 + +R ++ + + + + Y H + + P + + Sbjct: 42 VLVANRGEIAIRVFRACTELGIKSVAVYSEQDKMHMHRQKADESYIVGKGLPPVEAYLNI 101 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + VD + P +G L E + A L F+G DK + Sbjct: 102 PELIRVCKENDVDAVHPG-YGFLSERSDFAQAVIDAGLRFIGPSPEVVQKMGDKVAARVA 160 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 +AG+ I P E K GLP+ K A G G+ V E + Sbjct: 161 AIEAGVPIVPGTDGPVT--TKEEALEFCKKHGLPVIFKAAYGGGGRGMRVVRKMEDVEES 218 Query: 208 VDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A + + +E+ I+ R IE +LG+ E K Sbjct: 219 FQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYER--DCSVQRRHQKV 276 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++ + + EI DK+ AV+ + +G V+ E+N Sbjct: 277 VE-----IAPAPRLPIEIRDKMTEAAVRLARHVGYENAGTVEFLCDESGNFYFIEVNARL 331 Query: 321 GFTNISMYPKLWQASGLGYTD 341 + + +G+ Sbjct: 332 QVEHTV----TEEITGIDLVQ 348 >ref|NP_069058.1| (NC_000917) biotin carboxylase (acc) [Archaeoglobus fulgidus] sp|O30019|PYCA_ARCFU PYRUVATE CARBOXYLASE SUBUNIT A (PYRUVIC CARBOXYLASE A) pir||D69277 biotin carboxylase (acc) homolog - Archaeoglobus fulgidus gb|AAB91012.1| (AE001090) biotin carboxylase (acc) [Archaeoglobus fulgidus] Length = 506 Score = 215 bits (548), Expect = 6e-55 Identities = 51/341 (14%), Positives = 103/341 (29%), Gaps = 25/341 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV-PGKHE 84 + +R ++ + + + + Y H + + P Sbjct: 1 MFSKILVANRGEIAVRVMRACRELGIKTVGVYSSADKRAFHRVYADECYYIGKADPRDSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + I P +G L E+ + F+G K + Sbjct: 61 LNIDRIIEVAKKSGAEAIHPG-YGFLAENAEFAERCEEEGIVFIGPSPEVIRIAGSKVRS 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + ++ AG+ + P E K+G P+ VK + G +G+ V S+E+ Sbjct: 120 RESMQRAGVPVIPGSP---KIDTVDEAKEWAEKIGYPVAVKASGGGGGIGIVVVNSQEEL 176 Query: 205 AIAVD------LAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A ++ D V +E+ + R IE +L + + GE Sbjct: 177 EEAFRKSKKLGESYFKDSTVYLEKYLARPRHIEVQILADQHGNVIHLGER--ECSIQRRH 234 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E A+ E+ +++ +AV+ + +G + EIN Sbjct: 235 QKLIEE-----APSPALNEEMREELGKLAVKGAREIGYTNAGTFEFLY-ENGNFYFLEIN 288 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 + + +G+ R I E Sbjct: 289 SRLQVEHT----ITEVVTGIDIVKYQIR-IAYGEELRHGQE 324 >ref|NP_420691.1| (NC_002696) acetyl-CoA carboxylase, biotin carboxylase [Caulobacter crescentus] gb|AAK23859.1| (AE005862) acetyl-CoA carboxylase, biotin carboxylase [Caulobacter crescentus] Length = 448 Score = 215 bits (547), Expect = 7e-55 Identities = 60/334 (17%), Positives = 115/334 (33%), Gaps = 26/334 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ L + ++ + + + + L + + P + I Sbjct: 4 KILIANRGEIALRVHRACKEMGIATVAVHSEADRNSMWVRLADESVCIGPAPAAKSYLNI 63 Query: 89 D-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + I P +G L E+ ++ F+G DK K+ Sbjct: 64 PSIIAAAEITGAQAIHPG-YGFLSENARFAEIVGAHGFTFIGPKPEHIRMMGDKITAKQA 122 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 ++DAG+ + P + E K+G P+ +K A G G+ + E A A Sbjct: 123 VKDAGIPVVPGSDGGVS--TEEEAFEAAEKIGFPVLIKAAAGGGGRGMKVAQTREDLAEA 180 Query: 208 VD------LAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 V A D V +E+ ++ R IE V+ + + GE K Sbjct: 181 VSTARAEARAAFGDDTVYMERYLQKPRHIELQVIADSHGNVVHLGER--DCSLQRRHQKV 238 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E A++ E KI + V A + +G G+ ++ +E E+NT Sbjct: 239 LEE-----APSPALSAEGRAKIGKVVVDAVKAIGYLGVGTIEFLW-ENDEFFFIEMNTRL 292 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 + P +G+ L+ I +A Sbjct: 293 QVEH----PVTEAITGID---LVREQIRIAAGLP 319 >ref|NP_439133.1| (NC_000907) acetyl-CoA carboxylase, biotin carboxylase (accC) [Haemophilus influenzae Rd] sp|P43873|ACCC_HAEIN BIOTIN CARBOXYLASE (A SUBUNIT OF ACETYL-COA CARBOXYLASE (ACC) pir||F64105 biotin carboxylase (EC 6.3.4.14) - Haemophilus influenzae (strain Rd KW20) gb|AAC22632.1| (U32778) acetyl-CoA carboxylase, biotin carboxylase (accC) [Haemophilus influenzae Rd] Length = 448 Score = 214 bits (546), Expect = 8e-55 Identities = 55/326 (16%), Positives = 106/326 (31%), Gaps = 22/326 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ L + + + + + D H+ L + P + I Sbjct: 4 KVVIANRGEIALRILRACKELGIKTVAVHSTADRDLKHVLLADETICIGPAPSAKSYLNI 63 Query: 89 D-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + D I P +G L E+ + + F+G DK + Sbjct: 64 PAIIAAAEVTGADAIHPG-YGFLSENADFAEQVERSGFTFIGPTADVIRLMGDKVSAIKA 122 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAI- 206 ++ AG+ P +N + E+ ++G P+ +K + G G+ V SE+ Sbjct: 123 MKKAGVPCVPGSDGPVSNDIAKN-KEIAKRIGYPIIIKASGGGGGRGMRVVRSEDALEES 181 Query: 207 -----AVDLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A A + V +E+ ++ R +E VL + + A E K Sbjct: 182 IAMTKAEAKAAFNNDMVYMEKYLENPRHVEIQVLADTHGNAVYLAER--DCSMQRRHQKV 239 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E I E+ I + A +G G + E E+NT Sbjct: 240 VEE-----APAPGITEEVRRDIGSRCANACVEIGYRGAGTFEFLY-ENGEFYFIEMNTRI 293 Query: 321 GFTNISMYPKLWQASGLGYTDLITRL 346 + P +G+ R+ Sbjct: 294 QVEH----PVTEMITGVDLVKEQLRI 315 >ref|NP_246028.1| (NC_002663) AccC [Pasteurella multocida] gb|AAK03175.1| (AE006150) AccC [Pasteurella multocida] Length = 448 Score = 214 bits (546), Expect = 8e-55 Identities = 52/326 (15%), Positives = 103/326 (30%), Gaps = 22/326 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ L + + + + + + H+ L + P + I Sbjct: 4 KVVIANRGEIALRILRACKELGIKTVAVHSTADRELKHVLLADETVCIGPAPSTKSYLNI 63 Query: 89 D-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + D I P +G L E+ + + F+G DK Sbjct: 64 PAIIAAAEVTGADAIHPG-YGFLSENADFAEQVERSGFIFIGPTADVIRLMGDKVSAIEA 122 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAI- 206 ++ +G+ P + + E+ ++G P+ +K + G G+ V E Sbjct: 123 MKKSGVPCVPGSDGPVGSDMVKN-KEIAKRIGYPVIIKASGGGGGRGMRVVRDEASLEES 181 Query: 207 -----AVDLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A A + V +E+ ++ R IE VL + + A E K Sbjct: 182 IAMTKAEAKAAFNNDMVYMEKYLENPRHIEIQVLADTHGNAIYLAER--DCSMQRRHQKV 239 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E I+ E+ I +A +G G + E E+NT Sbjct: 240 VEE-----APAPGISDEVRRDIGERCAKACVEIGYRGAGTFEFLY-ENGEFYFIEMNTRI 293 Query: 321 GFTNISMYPKLWQASGLGYTDLITRL 346 + P +G+ R+ Sbjct: 294 QVEH----PVTEMITGVDLVKEQLRI 315 >ref|NP_464882.1| (NC_003210) acetyl-CoA carboxylase subunit (biotin carboxylase subunit) [Listeria monocytogenes EGD-e] emb|CAC99435.1| (AL591978) acetyl-CoA carboxylase subunit (biotin carboxylase subunit) [Listeria monocytogenes] Length = 454 Score = 214 bits (546), Expect = 1e-54 Identities = 68/343 (19%), Positives = 122/343 (34%), Gaps = 25/343 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 I + +R ++ + I + V + Y + HI L A + K + Sbjct: 1 MIKKVLVANRGEIAVRIIRAAKELGVETVAIYSEADREALHIQLADEAYCVGPAATKDSY 60 Query: 86 -QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + L D I P +G L E+ + N+ F+G A + KDV Sbjct: 61 LNMSNIISLAVLTNCDAIHPG-YGFLAENADFAELCEDCNITFIGPSASAISQMGTKDVA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + +R AG+ I P A+ ++ K+G P+ +K G G+ +EE+ Sbjct: 120 RETMRKAGVPIVPGSQGIVAD--VEDGKKIAKKIGYPVIIKATAGGGGKGIRVAENEEKL 177 Query: 205 AIAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + A D V +E+ I R +E VL +++ GE Sbjct: 178 ISGIHTTQQEAEAAFGDPGVYLEKYIQDFRHVEIQVLADNHGNVIHLGER--DCSIQRRL 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEI 316 K I+E AI + K+ AV+A + + +G ++ EN E+ Sbjct: 236 QKLIEES-----PSPAIDEKTRQKMGKAAVKAAKAVNYSGAGTIEFIYDHHENNFYFMEM 290 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 NT + P +G+ + + + E A Sbjct: 291 NTRIQVEH----PVTELVTGIDLVK--QQFLVASGEELQIKQA 327 >emb|CAC84690.1| (AJ306727) D-Ala:D-Lac ligase [Enterococcus faecium] Length = 289 Score = 214 bits (545), Expect = 1e-54 Identities = 99/305 (32%), Positives = 162/305 (52%), Gaps = 21/305 (6%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I ID +FD +GI K G W + Sbjct: 1 MNRIKVAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGM 119 + P + H L+ + + +DV FP++HG GEDG++QG+ Sbjct: 61 ----------ADSLPAILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGL 110 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 111 FVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPE------AGALT 164 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GV+KV E+ A++ A ++D K+++EQ I G E+ CAV+GN+ + Sbjct: 165 YPVFVKPARSGSSFGVTKVNGTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDD 224 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L+ + + E G++ + VPA I E +++ A + Y+ LGC Sbjct: 225 LIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERKRVQETAKKVYRVLGC 284 Query: 296 AGMAR 300 G+AR Sbjct: 285 RGLAR 289 >ref|NP_407114.1| (NC_003143) biotin carboxylase [Yersinia pestis] emb|CAC93128.1| (AJ414158) biotin carboxylase [Yersinia pestis] Length = 449 Score = 214 bits (544), Expect = 1e-54 Identities = 50/330 (15%), Positives = 104/330 (31%), Gaps = 25/330 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ L + + + + + + D H+ L + P + I Sbjct: 4 KIVIANRGEIALRILRACKELGIKTVAVHSVADRDLKHVLLADETVCIGPAPSVKSYLNI 63 Query: 89 D-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + + + P +G L E+ + + F+G DK Sbjct: 64 PAIISAAEITGAVAVHPG-YGFLSENADFAEQVERSGFIFIGPRAETIRLMGDKVSAISA 122 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAI- 206 ++ AG+ P ++ + ++G P+ +K + G G+ V ++ Sbjct: 123 MKKAGVPCVPGSDGPLSDDTTKN-KAFAKRIGYPVIIKASGGGGGRGMRVVRHDKDLEES 181 Query: 207 -----AVDLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A A + V +E+ ++ R IE +L + A E K Sbjct: 182 INMTRAEAKAAFNNDMVYMEKYLENPRHIEVQILADGQGNAIYLAER--DCSMQRRHQKV 239 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E I E+ I +A +G G + E E+NT Sbjct: 240 VEE-----APAPGITSEMRRYIGERCAKACMEIGYRGAGTFEFLY-ENGEFYFIEMNTRI 293 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELA 350 + +G+ LI + +A Sbjct: 294 QVEHTV----TEMITGID---LIKEQLRIA 316 >pir||T39734 pyruvate carboxylase (EC 6.4.1.1) [similarity] - fission yeast (Schizosaccharomyces pombe) emb|CAB52809.1| (AL109846) pyruvate carboxylase (EC 6.4.1.1) [Schizosaccharomyces pombe] Length = 1185 Score = 214 bits (544), Expect = 1e-54 Identities = 43/334 (12%), Positives = 102/334 (29%), Gaps = 25/334 (7%) Query: 18 EVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA 77 + S + + +R ++ + + + + Y H + + Sbjct: 24 DRSSLLGEKFTKVLVANRSEIAIRVFRTAHELSMHTVAIYSYEDRLSMHRQKADESYPIG 83 Query: 78 QV----PGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVL 133 +V P + + + +++ P +G L E+ + A + FVG Sbjct: 84 KVGQYSPVGAYLAIDEIVSIAKRTGANLVHPG-YGFLSENAEFARKVNEAGMQFVGPSPE 142 Query: 134 ASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSV 193 + DK + + G+ + P + + GLP+ +K A G Sbjct: 143 VIDSLGDKTKARAIAIRCGVPVVPGTPGPVEHYEE--AEAFVKEYGLPVIIKAAMGGGGR 200 Query: 194 GVSKVTSEEQYAIAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGE 246 G+ V S + + + A D V +E+ + + IE ++ + E Sbjct: 201 GMRVVRSADTLKESFERARSEALASFGDGTVFIERFLDKPKHIEIQLMADKAGNVIHLHE 260 Query: 247 IVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT 306 K ++ + + P+I + A++ + + + L Sbjct: 261 R--DCSVQRRHQKVVE-----IAPAKDLDPKIRQALYDDAIKIAKEVKYCNAGTAEFLLD 313 Query: 307 PENEVVINEINTLPGFTNISMYPKLWQASGLGYT 340 + EIN + + +G+ Sbjct: 314 QKGRHYFIEINPRIQVEHT----ITEEITGVDIV 343 >ref|NP_229950.1| (NC_002505) acetyl-CoA carboxylase, biotin carboxylase [Vibrio cholerae] pir||F82341 acetyl-CoA carboxylase, biotin carboxylase VC0295 [imported] - Vibrio cholerae (group O1 strain N16961) gb|AAF93469.1| (AE004117) acetyl-CoA carboxylase, biotin carboxylase [Vibrio cholerae] Length = 447 Score = 213 bits (543), Expect = 2e-54 Identities = 52/341 (15%), Positives = 102/341 (29%), Gaps = 23/341 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ L + + + + + D H+ L + + + I Sbjct: 4 KVVIANRGEIALRILRACKELGIKTVAVHSTADRDLKHVLLADESICIGPAKSIDSYLNI 63 Query: 89 D-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + + I P +G L E+ + + FVG DK Sbjct: 64 PRIISAAEVTGAVAIHPG-YGFLSENADFAEQVERSGFIFVGPRAETIRLMGDKVSAINA 122 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ---- 203 ++ AG+ P + ++G P+ +K + G G+ V +E + Sbjct: 123 MKKAGVPCVPGSDGP-LDNDEAKNKAHAKRIGYPVIIKASGGGGGRGMRVVRNEAELTKS 181 Query: 204 --YAIAVDLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A A + V +E+ ++ R +E V+ + A E K Sbjct: 182 IQMTRAEAKAAFNNDMVYMEKFLENPRHVEVQVIADGQGNAIHLAER--DCSMQRRHQKV 239 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E I E+ I +A +G G + E E+NT Sbjct: 240 VEE-----APAPGITEEMRKFIGERCTRACIEIGYRGAGTFEFLY-ENGEFYFIEMNTRI 293 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALK 361 + P +G+ R I +K Sbjct: 294 QVEH----PVTEMITGVDLIKEQLR-IAAGQPLSFKQEDIK 329 >ref|NP_470730.1| (NC_003212) acetyl-CoA carboxylase subunit (biotin carboxylase subunit) [Listeria innocua] emb|CAC96625.1| (AL596168) acetyl-CoA carboxylase subunit (biotin carboxylase subunit) [Listeria innocua] Length = 454 Score = 213 bits (543), Expect = 2e-54 Identities = 69/343 (20%), Positives = 121/343 (35%), Gaps = 25/343 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 I + +R ++ + I + V + Y + HI L A + K + Sbjct: 1 MIKKVLVANRGEIAVRIIRAAKELGVETVAIYSEADKEALHIQLADEAYCVGPAATKDSY 60 Query: 86 -QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + L D I P +G L E+ + N+ F+G A + KDV Sbjct: 61 LNMSNIISLAVLTNCDAIHPG-YGFLAENADFAELCEDCNITFIGPSASAISQMGTKDVA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEE-- 202 + +R AG+ I P A+ ++ K+G P+ +K G G+ +EE Sbjct: 120 RETMRKAGVPIVPGSQGIVAD--VEDGKKIAKKIGYPVIIKATAGGGGKGIRVAENEEKL 177 Query: 203 ----QYAIAVDLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 Q A D V +E+ I R +E VL +++ GE Sbjct: 178 ISGIQTTQQEAEAAFGDPGVYLEKYIQDFRHVEIQVLADNHGNVIHLGER--DCSIQRRL 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEI 316 K I+E AI + K+ AV+A + + +G ++ EN E+ Sbjct: 236 QKLIEES-----PSPAIDEKTRQKMGKAAVKAAKAVNYSGAGTIEFIFDHHENNFYFMEM 290 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 NT + P +G+ + + + E A Sbjct: 291 NTRIQVEH----PVTELVTGIDLVK--QQFLVASGEELKIKQA 327 >ref|NP_520963.1| (NC_003295) PROBABLE D-ALANINE--D-ALANINE LIGASE B PROTEIN [Ralstonia solanacearum] emb|CAD16549.1| (AL646072) PROBABLE D-ALANINE--D-ALANINE LIGASE B PROTEIN [Ralstonia solanacearum] Length = 331 Score = 213 bits (542), Expect = 2e-54 Identities = 110/348 (31%), Positives = 159/348 (45%), Gaps = 50/348 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 +VG++ GG+SAE E+SL S ++ A+ D Q ++ Sbjct: 19 KVGVILGGRSAEREISLLSGNGVLAALRSRGVDAHPFDPGTQPVAGLA------------ 66 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 + +HG GEDG++QG+L Sbjct: 67 -------------------------------AQGFHRVVISLHGRFGEDGTIQGLLEQFG 95 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ GS VLASA MDK+ TKRL + L F+ L + V +LGLPL V Sbjct: 96 IPYTGSGVLASALAMDKEATKRLWQTHSLPTPDFVMLHAGAD----WQAVADRLGLPLIV 151 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG-NDNPQAST 243 KPA +GSS+G++KVTS + A + A D V+ EQ I G E+ CAV+G ++ A Sbjct: 152 KPAREGSSIGLTKVTSVAELPAAYEKAARLDRDVMAEQFIDGDELTCAVIGEGEHATALP 211 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 IV Y Y KY +D PA I E +++A+ VQAY++LGC G R D+ Sbjct: 212 LIRIVAPQANYDYQHKYFTDDTRYE-CPAPIPAEAAARVQALVVQAYRSLGCRGWGRADI 270 Query: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 L + + E+NT PG T S+ P +A G+ Y D + +L A Sbjct: 271 MLRKHDGAPFLLEMNTSPGMTGHSLVPMAARAVGISYEDFVLQLAATA 318 >dbj|BAA11239.1| (D78170) pyruvate carboxylase [Schizosaccharomyces pombe] Length = 1185 Score = 212 bits (541), Expect = 3e-54 Identities = 43/334 (12%), Positives = 102/334 (29%), Gaps = 25/334 (7%) Query: 18 EVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA 77 + S + + +R ++ + + + + Y H + + Sbjct: 24 DRSSLLGEKFTKVLVANRSEIAIRVFRTAHELSMHTVAIYSYEDILSMHRQKADESYPIG 83 Query: 78 QV----PGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVL 133 +V P + + + +++ P +G L E+ + A + FVG Sbjct: 84 KVGQYSPVGAYLAIDEIVSIAKRTGANLVHPG-YGFLSENAEFARKVNEAGMQFVGPSPE 142 Query: 134 ASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSV 193 + DK + + G+ + P + + GLP+ +K A G Sbjct: 143 VIDSLGDKTKARAIAIRCGVPVVPGTPGPVEHYEE--AEAFVKEYGLPVIIKAAMGGGGR 200 Query: 194 GVSKVTSEEQYAIAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGE 246 G+ V S + + + A D V +E+ + + IE ++ + E Sbjct: 201 GMRVVRSADTLKESFERARSEALASFGDGTVFIERFLDKPKHIEIQLMADKAGNVIHLHE 260 Query: 247 IVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT 306 K ++ + + P+I + A++ + + + L Sbjct: 261 R--DCSVQRRHQKVVE-----IAPAKDLDPKIRQALYDDAIKIAKEVKYCNAGTAEFLLD 313 Query: 307 PENEVVINEINTLPGFTNISMYPKLWQASGLGYT 340 + EIN + + +G+ Sbjct: 314 QKGRHYFIEINPRIQVEHT----ITEEITGVDIV 343 >ref|NP_457756.1| (NC_003198) biotin carboxylase [Salmonella enterica subsp. enterica serovar Typhi] ref|NP_462290.1| (NC_003197) acetyl CoA carboxylase, biotin carboxylase subunit [Salmonella typhimurium LT2] gb|AAL22249.1| (AE008856) acetyl CoA carboxylase, biotin carboxylase subunit [Salmonella typhimurium LT2] emb|CAD07895.1| (AL627278) biotin carboxylase [Salmonella enterica subsp. enterica serovar Typhi] Length = 449 Score = 212 bits (541), Expect = 4e-54 Identities = 55/330 (16%), Positives = 106/330 (31%), Gaps = 25/330 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ L + + + + + D H+ L + P + I Sbjct: 4 KIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNI 63 Query: 89 D-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + + I P +G L E+ + + + F+G DK Sbjct: 64 PAIISAAEITGAVAIHPG-YGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSAITA 122 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ---- 203 ++ AG+ P + + ++G P+ +K + G G+ V S+ + Sbjct: 123 MKKAGVPTVPGSDGPLGDDM-NANRAHAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQS 181 Query: 204 --YAIAVDLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A A + V +E+ ++ R IE VL + A E K Sbjct: 182 ISMTKAEAKAAFSNDMVYMEKYLENPRHIEIQVLADGQGNAIYLAER--DCSMQRRHQKV 239 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E I PE+ I +A +G G + E E+NT Sbjct: 240 VEE-----APAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF-ENGEFYFIEMNTRI 293 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELA 350 + P +G+ LI + +A Sbjct: 294 QVEH----PVTEMITGVD---LIKEQLRIA 316 >ref|NP_282436.1| (NC_002163) biotin carboxylase [Campylobacter jejuni] pir||G81271 biotin carboxylase (EC 6.3.4.14) Cj1290c [imported] - Campylobacter jejuni (strain NCTC 11168) emb|CAB73717.1| (AL139078) biotin carboxylase [Campylobacter jejuni] Length = 443 Score = 212 bits (540), Expect = 4e-54 Identities = 58/333 (17%), Positives = 119/333 (35%), Gaps = 23/333 (6%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHE 84 I + +R ++ L + + Y D ++ ++ + + Sbjct: 1 MEIKSILIANRGEIALRALRTIKEMGKKAICVYSEADKDALYLKYADASICIGKARSSES 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + I A +G L E+ + + N+ F+G V A DK Sbjct: 61 YLNIPAIIAAAEIAEADAIFPGYGFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKA 120 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K++++ AG+ + P A + ++ ++G P+ +K A G G+ V +E+ Sbjct: 121 KQVMQRAGVPVIPGSDGALAGA--EAAKKLAKEIGYPVILKAAAGGGGRGMRVVENEKDL 178 Query: 205 AIAVDLA------FEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A D + +E+ I R IE V+G+ GE Sbjct: 179 EKAYWSAESEAMTAFGDGTMYMEKYIQNPRHIEVQVIGDSFGNVIHVGER--DCSMQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E A + + + ++ A++A + +G G + + + E+N Sbjct: 237 QKLIEESPAIL-----LDEKTRTRLHETAIKAAKAIGYEGAGTFEFLVDKNLDFYFIEMN 291 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 T + SG+ +I ++I++A Sbjct: 292 TRLQVEHCV----SEMVSGID---IIEQMIKVA 317 >gb|AAA53140.1| (U08469) 3-methylcrotonyl-CoA carboxylase, biotin-carrier domain [Glycine max] Length = 674 Score = 212 bits (540), Expect = 5e-54 Identities = 54/308 (17%), Positives = 104/308 (33%), Gaps = 26/308 (8%) Query: 52 SDASNYLLNADDPAHIALRPSATSLAQVPGK-HEHQLIDAQNGQPLPTVDVIFPIVHGTL 110 + Y D H+A A + P + + I P +G L Sbjct: 1 QTVAVYSDADRDSLHVATADEAIRIGPPPARLSYLNGASIVDAAIRSGAQAIHPG-YGFL 59 Query: 111 GEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS 170 E + + L F+G A DK +KR++ AG+ + P + + Sbjct: 60 SESADFAKLCEESGLTFIGPPASAIRDMGDKSASKRIMGAAGVPLVPGYHGYDQDIEKMK 119 Query: 171 FAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV------DLAFEFDHKVIVEQGI 224 ++G P+ +KP + G G+ V + +++ + A + +++E+ I Sbjct: 120 LE--ADRIGYPVLIKPTHGGGGKGMRIVHTPDEFVESFLAAQREAAASFGVNTILLEKYI 177 Query: 225 -KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIR 283 + R IE + G+ + E K I+E I+ + ++ Sbjct: 178 TRPRHIEVQIFGDKHGNVLHLYER--DCSVQRRHQKIIEE-----APAPNISADFRAQLG 230 Query: 284 AIAVQAYQTLGCAGMARVDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDL 342 AV A + + V+ + +E E+NT + P G L Sbjct: 231 VAAVSAAKAVNYYNAGTVEFIVDTVSDEFYFMEMNTRLQVEH----PVTEMIVGQD---L 283 Query: 343 ITRLIELA 350 + I +A Sbjct: 284 VEWQILVA 291 >emb|CAC84688.1| (AJ306726) D-Ala:D-Lac ligase [Enterococcus faecium] Length = 289 Score = 212 bits (540), Expect = 5e-54 Identities = 98/305 (32%), Positives = 162/305 (52%), Gaps = 21/305 (6%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I ID +FD +GI K G W + Sbjct: 1 MNRIKVAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ-PLPTVDVIFPIVHGTLGEDGSLQGM 119 + P + H L+ + + +DV FP++HG GEDG++QG+ Sbjct: 61 ----------ADSLPAILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGL 110 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +P+VG D+ +SAAC+DK + L ++AG+ + F + + ++ L Sbjct: 111 FVLSGIPYVGCDIQSSAACVDKSLAYILTKNAGIAVPEFQMIDKGDKPE------AGALT 164 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GV+KV E+ A++ A ++D K+++EQ I G E+ CAV+GN+ + Sbjct: 165 YPVFVKPARSGSSFGVTKVNGTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDD 224 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L+ + + E G++ + VPA I E +++ A + Y+ LGC Sbjct: 225 LIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERKRVQETAKKVYRVLGC 284 Query: 296 AGMAR 300 G+AR Sbjct: 285 RGLAR 289 >emb|CAC19838.1| (AJ009972) pyruvate carboxylase [Aspergillus niger] Length = 1192 Score = 212 bits (539), Expect = 5e-54 Identities = 45/327 (13%), Positives = 100/327 (29%), Gaps = 25/327 (7%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA----QVP 80 + +R ++ + + + + Y H A + P Sbjct: 39 MQFQKILVANRGEIPIRIFRTAHELSLQTVAVYSHEDHLSMHRQKADEAYMIGKRGQYTP 98 Query: 81 GKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMD 140 + + V +I P +G L E+ + + + FVG + D Sbjct: 99 VGAYLAIDEIVKIALEHGVHLIHPG-YGFLSENAEFARKVEQSGMVFVGPTPQTIESLGD 157 Query: 141 KDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTS 200 K ++L + + P G P+ +K A G G+ V Sbjct: 158 KVSARQLAIRCDVPVVPGTPGPVERYEE--VKAFTDTYGFPIIIKAAFGGGGRGMRVVRD 215 Query: 201 EEQYAIAVDLA------FEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDF 253 + + + + A + V VE+ + + IE +LG+++ E Sbjct: 216 QAELRDSFERATSEARSAFGNGTVFVERFLDRPKHIEVQLLGDNHGNVVHLFER--DCSV 273 Query: 254 YAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVI 313 K ++ + + ++ D+I A AV+ +++ + + +N Sbjct: 274 QRRHQKVVE-----IAPAKDLPADVRDRILADAVKLAKSVNYRNAGTAEFLVDQQNRYYF 328 Query: 314 NEINTLPGFTNISMYPKLWQASGLGYT 340 EIN + + +G+ Sbjct: 329 IEINPRIQVEHT----ITEEITGIDIV 351 >pir||S71009 biotin carboxylase protein A2 - Saccharopolyspora erythraea emb|CAA63311.1| (X92557) biotin carboxylase and biotin carboxyl carrier protein [Saccharopolyspora erythraea] Length = 591 Score = 211 bits (538), Expect = 7e-54 Identities = 60/336 (17%), Positives = 109/336 (31%), Gaps = 24/336 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV-PGKHE 84 I + +R ++ + I V + Y D + L A L + Sbjct: 9 AIKKVLVANRGEIAVRVIRACRDVGVGSVAVYAEPDVDAVFVRLADEAFGLGGSTAAESY 68 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + D + P +G L E+ + A L +VG A DK Sbjct: 69 LDIGKVIDAAQRSGADAVHPG-YGFLSENADFAQAVLDAGLVWVGPSPEAIRVLGDKVTA 127 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 +R+ + G + P + GLP+ +K A G G+ S E+ Sbjct: 128 RRIALEVGAPLVPGT--EEPASGADEVVAFAEEHGLPVAIKAAFGGGGRGLKVARSLEEI 185 Query: 205 AIAVD------LAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + A + VE+ + R +E VL + + G Sbjct: 186 PGLFESAVREAEAAFGRGECFVERYLDRPRHVEAQVLADRHGGVVVVGTR--DCSLQRRH 243 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E ++ E ++I A + G AG V+ + + + E+N Sbjct: 244 QKLVEE-----APAPFLSEEQRERIHTAAREICARAGYAGAGTVEFLVGADGTISFLEVN 298 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 T + P + +GL ++ +L A ER Sbjct: 299 TRLQVEH----PVSEETTGLDL--VVEQLRIAAGER 328 >ref|NP_390314.1| (NC_000964) acetyl-CoA carboxylase subunit (biotin carboxylase subunit) [Bacillus subtilis] pir||A69581 acetyl-CoA carboxylase (biotin carboxylase subunit) accC - Bacillus subtilis dbj|BAA12569.1| (D84432) YqhX [Bacillus subtilis] emb|CAB14365.1| (Z99116) acetyl-CoA carboxylase subunit (biotin carboxylase subunit) [Bacillus subtilis] Length = 450 Score = 211 bits (538), Expect = 8e-54 Identities = 65/334 (19%), Positives = 120/334 (35%), Gaps = 26/334 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 I + +R ++ + I + + + Y D H+ + A + K + Sbjct: 1 MIKKLLIANRGEIAVRIIRACRELGIETVAVYSEADKDALHVQMADEAFCIGPKASKDSY 60 Query: 86 -QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + L D I P +G L E+ + N+ FVG A + KDV Sbjct: 61 LNVTNIVSVAKLTGTDAIHPG-YGFLAENADFAELCEEVNVTFVGPSPDAISKMGTKDVA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + ++ AG+ I P N + +++G P+ +K G G+ +EE+ Sbjct: 120 RETMKQAGVPIVPGSQGIIEN--VEEAVSLANEIGYPVIIKATAGGGGKGIRVARTEEEL 177 Query: 205 AIAVD------LAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + + V +E+ I R +E VL ++ GE Sbjct: 178 INGIKITQQEAATAFRNPGVYIEKYIEDFRHVEIQVLADNYGNTIHLGER--DCSIQRRL 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEI 316 K ++E A+ EI +++ AV+A + +G G V+ E E+ Sbjct: 236 QKLLEES-----PSPALDSEIREQMGDAAVKAAKAVGYTGAGTVEFIYDYNEQRYYFMEM 290 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 NT + P +G LI I++A Sbjct: 291 NTRIQVEH----PVTEMVTGTD---LIKEQIKVA 317 >gb|AAC69197.1| (AF097728) pyruvate carboxylase [Aspergillus terreus] Length = 1193 Score = 211 bits (537), Expect = 1e-53 Identities = 45/327 (13%), Positives = 99/327 (29%), Gaps = 25/327 (7%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA----QVP 80 + +R ++ + + + + + H A + P Sbjct: 40 MQFQKILVANRGEIPIRIFRTAHELSLQTVAIFSHEDRLSMHRQKADEAYMIGHRGQYTP 99 Query: 81 GKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMD 140 + V +I P +G L E+ + A + FVG + D Sbjct: 100 VGAYLAADEIVKIALEHGVHLIHPG-YGFLSENADFARKVEKAGMVFVGPTPDTIDSLGD 158 Query: 141 KDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTS 200 K ++L + + P G P+ +K A G G+ V + Sbjct: 159 KVSARQLAIRCNVPVVPGTEGPVERYEE--VKAFTDTYGFPIIIKAAFGGGGRGMRVVRN 216 Query: 201 EEQYAIAVDLA------FEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDF 253 + + + A + V VE+ + + IE +LG+++ E Sbjct: 217 QADLRDSFERATSEARSAFGNGTVFVERFLDKPKHIEVQLLGDNHGNVVHLFER--DCSV 274 Query: 254 YAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVI 313 K ++ V + ++ D+I + AV+ +++ + + +N Sbjct: 275 QRRHQKVVE-----VAPAKDLPTDVRDRILSDAVKLAKSVNYRNAGTAEFLVDQQNRHYF 329 Query: 314 NEINTLPGFTNISMYPKLWQASGLGYT 340 EIN + + +G+ Sbjct: 330 IEINPRIQVEHT----ITEEITGIDIV 352 >sp|P49787|ACCC_BACSU BIOTIN CARBOXYLASE (A SUBUNIT OF ACETYL-COA CARBOXYLASE (ACC) gb|AAB00183.1| (U36245) biotin carboxylase [Bacillus subtilis] Length = 448 Score = 210 bits (535), Expect = 1e-53 Identities = 65/334 (19%), Positives = 119/334 (35%), Gaps = 26/334 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 I + +R ++ + I + + + Y D H+ + A + K + Sbjct: 1 MIKKLLIANRGEIAVRIIRACRELGIETVAVYSEADKDALHVQMADEAFCIGPKASKDSY 60 Query: 86 -QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + L D I P +G L E+ + N+ FVG A + KDV Sbjct: 61 LNVTNIVSVAKLTGTDAIHPG-YGFLAENADFAELCEEVNVTFVGPSADAISKMGTKDVA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + ++ AG+ I P N + +++G P+ +K G G+ +EE+ Sbjct: 120 RETMKQAGVPIVPGSQGIIEN--VEEAVSLANEIGYPVIIKATAGGGGKGIRVARTEEEL 177 Query: 205 AIAVD------LAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + + V +E+ I R +E VL ++ GE Sbjct: 178 INGIKITQQEAATAFGNPGVYIEKYIEDFRHVEIQVLADNYGNTIHLGER--DCSIQRRL 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEI 316 K + E A+ EI +++ AV+A + +G G V+ E E+ Sbjct: 236 QKLLGES-----PSPALGSEIREQMGDAAVKAAKAVGYTGAGTVEFIYDYNEQRYYFMEM 290 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 NT + P +G LI I++A Sbjct: 291 NTRIQVEH----PVTEMVTGTD---LIKEQIKVA 317 >pir||S71006 biotin carboxylase protein A1 - Saccharopolyspora erythraea emb|CAA63308.1| (X92556) biotin carboxylase and biotin carboxyl carrier protein [Saccharopolyspora erythraea] Length = 597 Score = 210 bits (535), Expect = 2e-53 Identities = 59/333 (17%), Positives = 108/333 (31%), Gaps = 24/333 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV-PGKHEHQL 87 + +R ++ + I V + Y D + L A L + + Sbjct: 18 KVLVANRGEIAVRVIRACRDVGVGSVAVYAEPDVDAVFVRLADEAFGLGGSTAAESYLDI 77 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + D + P +G L E+ + A L +VG A DK +R+ Sbjct: 78 GKVIDAAQRSGADAVHPG-YGFLSENADFAQAVLDAGLVWVGPSPEAIRVLGDKVTARRI 136 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + G + P + GLP+ +K A G G+ S E+ Sbjct: 137 ALEVGAPLVPGT--EEPASGADEVVAFAEEHGLPVAIKAAFGGGGRGLKVARSLEEIPGL 194 Query: 208 VD------LAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 + A + VE+ + R +E VL + + G K Sbjct: 195 FESAVREAEAAFGRGECFVERYLDRPRHVEAQVLADRHGGVVVVGTR--DCSLQRRHQKL 252 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E ++ E ++I A + G AG V+ + + + E+NT Sbjct: 253 VEE-----APAPFLSEEQRERIHTAAREICARAGYAGAGTVEFLVGADGTISFLEVNTRL 307 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELALER 353 + P + +GL ++ +L A ER Sbjct: 308 QVEH----PVSEETTGLDL--VVEQLRIAAGER 334 >ref|NP_232962.1| (NC_002506) D-alanine--D-alanine ligase [Vibrio cholerae] pir||A82443 D-alanine--D-alanine ligase VCA0572 [imported] - Vibrio cholerae (group O1 strain N16961) gb|AAF96474.1| (AE004388) D-alanine--D-alanine ligase [Vibrio cholerae] Length = 334 Score = 210 bits (535), Expect = 2e-53 Identities = 104/351 (29%), Positives = 174/351 (48%), Gaps = 29/351 (8%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKS-RFDVVLLGIDKQGQWHVSDASNYLL 59 M K + ++ GG S+EHE+SL SA I ++ + F V+ + + K+G + A YL Sbjct: 1 MTKTTILLLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLD 60 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 + +D + P +HG GE G +Q M Sbjct: 61 TNSATLNSDKASYP-------------------------IDFVVPCIHGFPGETGDIQSM 95 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L +A +P++G ASA +K +K + P++ LT+ +I A+ Sbjct: 96 LELAGIPYLGCGPEASANSFNKITSKLWYDALDIPNTPYLFLTQNTPSSIDKAKQAFGHW 155 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL-GNDN 238 +FVK A QGSSVG KVT+E+Q A A++ AF F +V+VEQ +K RE+E + N Sbjct: 156 GSIFVKAARQGSSVGCYKVTTEDQIAPAIEAAFGFSEQVLVEQAVKPRELEVSAYEMNGK 215 Query: 239 PQASTCGEIVLTSD-FYAYDTKYIDEDGAKVVVPAA-IAPEINDKIRAIAVQAYQTLGCA 296 S GE++ FY+Y+ KY A+ V+ A + + + I+ A + + + Sbjct: 216 LYISKPGEVIAPEGTFYSYEEKYSANSHARTVLEAENLTEKHKELIQTYAERVFIHMKLR 275 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 ++R+D FLT E ++ +NE+NT PG T ISM+PK+ + +G +++ + + + Sbjct: 276 HLSRIDFFLTQEGQIYLNEVNTFPGMTPISMFPKMLEHNGHRFSEFLVQCV 326 >ref|NP_417722.1| (NC_000913) acetyl CoA carboxylase, biotin carboxylase subunit [Escherichia coli K12] sp|P24182|ACCC_ECOLI BIOTIN CARBOXYLASE (A SUBUNIT OF ACETYL-COA CARBOXYLASE (ACC) pir||JS0632 acetyl-CoA carboxylase (EC 6.4.1.2) biotin carboxylase chain [validated] - Escherichia coli pdb|1DV1|A Chain A, Structure Of Biotin Carboxylase (Apo) pdb|1DV1|B Chain B, Structure Of Biotin Carboxylase (Apo) pdb|1BNC|A Chain A, Mol_id: 1; Molecule: Biotin Carboxylase; Chain: A, B; Ec: 6.3.4.14 pdb|1BNC|B Chain B, Mol_id: 1; Molecule: Biotin Carboxylase; Chain: A, B; Ec: 6.3.4.14 gb|AAA23409.1| (M80458) biotin carboxylase [Escherichia coli] gb|AAA23746.1| (M83198) biotin carboxylase [Escherichia coli] gb|AAA58059.1| (U18997) biotin carboxylase [Escherichia coli] gb|AAC76288.1| (AE000404) acetyl CoA carboxylase, biotin carboxylase subunit [Escherichia coli K12] Length = 449 Score = 210 bits (535), Expect = 2e-53 Identities = 53/330 (16%), Positives = 107/330 (32%), Gaps = 25/330 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ L + + + + + D H+ L + P + I Sbjct: 4 KIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNI 63 Query: 89 D-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + + I P +G L E+ + + + F+G DK Sbjct: 64 PAIISAAEITGAVAIHPG-YGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAA 122 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ---- 203 ++ AG+ P + + + + ++G P+ +K + G G+ V + + Sbjct: 123 MKKAGVPCVPGSDGPLGDDMDKN-RAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQS 181 Query: 204 --YAIAVDLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A A + V +E+ ++ R +E VL + A E K Sbjct: 182 ISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAER--DCSMQRRHQKV 239 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E I PE+ I +A +G G + E E+NT Sbjct: 240 VEE-----APAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF-ENGEFYFIEMNTRI 293 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELA 350 + P +G+ LI + +A Sbjct: 294 QVEH----PVTEMITGVD---LIKEQLRIA 316 >ref|NP_220985.1| (NC_000963) PROPIONYL-COA CARBOXYLASE ALPHA CHAIN PRECURSOR (pccA) [Rickettsia prowazekii] pir||C71667 propionyl-COA carboxylase alpha chain precursor (pccA) RP618 - Rickettsia prowazekii emb|CAA15061.1| (AJ235272) PROPIONYL-COA CARBOXYLASE ALPHA CHAIN PRECURSOR (pccA) [Rickettsia prowazekii] Length = 665 Score = 210 bits (534), Expect = 2e-53 Identities = 51/330 (15%), Positives = 117/330 (35%), Gaps = 25/330 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQ-L 87 + +R ++ + I + + + Y + ++ A + P + + Sbjct: 8 KILIANRSEIAVRIIRTLKKMGIGSVAVYSEADTNSMYVQHADEAYYIGDSPATASYLSV 67 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + + + P +G L E+ + +L+ + +G DK K++ Sbjct: 68 KNLISAIRESGASAVHPG-YGFLSENPNFANILKREGVVLIGPSAGTIKKMGDKIEAKKI 126 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 +AG++ P T + ++ ++G P+ VK G G+ V + + A A Sbjct: 127 AIEAGVSTVPGYMGTIKD--VKQAIDIAKEIGFPVIVKATAGGGGRGMRVVNNPAEMANA 184 Query: 208 VDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 + A D ++ +E+ I+ R IE ++ + + GE + K Sbjct: 185 FESAKLEAANSFSDDRLFIEKLIQTPRHIEIQLIADQYGNSVCLGER--ECSIQRHHQKV 242 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 I+E + I I ++ + Q +G V+ + E+NT Sbjct: 243 IEE-----APSSFITENIRHEMYRQVISLSQKVGYYSAGTVEFIVDSNKNFYFLEMNTRL 297 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELA 350 + P +G+ ++ +I++A Sbjct: 298 QVEH----PVTELITGID---IVEEMIKIA 320 >ref|NP_360596.1| (NC_003103) propionyl-CoA carboxylase alpha chain precursor [EC:6.4.1.3] [Rickettsia conorii] gb|AAL03497.1| (AE008649) propionyl-CoA carboxylase alpha chain precursor [EC:6.4.1.3] [Rickettsia conorii] Length = 665 Score = 210 bits (534), Expect = 2e-53 Identities = 52/330 (15%), Positives = 119/330 (35%), Gaps = 25/330 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHEHQL 87 + +R ++ + I + + + Y + ++ A + P + + Sbjct: 8 KILIANRSEIAVRIIRTLKKMGIKSVAVYSEADTNSMYVQHADEAYYIGDSPATESYLSI 67 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + + + P +G L E+ + +L+ + +G DK K++ Sbjct: 68 KNIISAIRESGASAVHPG-YGFLSENPNFANILKREGVVLIGPSAGTIKKMGDKIEAKKI 126 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 +AG++ P T + ++ ++G P+ VK A G G+ V + + A A Sbjct: 127 AIEAGVSTVPGYMGTIND--VKQAIDIAKEIGFPVIVKAAAGGGGRGMRVVNNPAEMANA 184 Query: 208 VDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 + A D ++ +E+ I+ R IE ++ + + GE + K Sbjct: 185 FESAKLEAANSFSDDRLFIEKLIQTPRHIEIQLIADQYGNSVCLGER--ECSIQRHHQKV 242 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 I+E + I +I ++ + Q +G V+ + E+NT Sbjct: 243 IEE-----APSSFITEDIRQEMYRQVISLSQKVGYYSAGTVEFIVDSNKNFYFLEMNTRL 297 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELA 350 + P +G+ ++ +I++A Sbjct: 298 QVEH----PVTELITGID---IVEEMIQIA 320 >ref|NP_282187.1| (NC_002163) putative pyruvate carboxylase A subunit [Campylobacter jejuni] pir||B81306 probable pyruvate carboxylase (EC 6.4.1.1) A chain Cj1037c [imported] - Campylobacter jejuni (strain NCTC 11168) emb|CAB73293.1| (AL139077) putative pyruvate carboxylase A subunit [Campylobacter jejuni] Length = 481 Score = 210 bits (534), Expect = 2e-53 Identities = 56/332 (16%), Positives = 112/332 (32%), Gaps = 23/332 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 I + +R ++ + I H+ + + + H+ + A + + Sbjct: 3 QIHKILIANRAEIAVRVIRACRDLHIKSVAVFTEPDRECLHVKIADEAYRIGTDAIRGYL 62 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + D I P +G L E+ A + F+G +K++ + Sbjct: 63 DVARIVEIAKACGADAIHPG-YGFLSENYEFAKACEDAGIIFIGPKSEVIHKMGNKNIAR 121 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 +L+ G+ I P + K+G P+ +K + G G+ V E+ Sbjct: 122 KLMAKNGIPIVPGTEKLN-SYSMEEIKIFAEKIGYPVILKASGGGGGRGIRVVHKEQDLE 180 Query: 206 IAVDLAFE------FDHKVIVEQG-IKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A + + +V +E+ + R IE +LG++ E Sbjct: 181 NAFESCKREALTYFNNDEVFMEKYVVNPRHIEFQILGDNYGNIIHLCER--DCSIQRRHQ 238 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K I+ + I+ + + AV A + +G ++ L N E+NT Sbjct: 239 KVIE-----IAPCPGISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDDYNRFYFMEMNT 293 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + P + +G+ LI R I +A Sbjct: 294 RIQVEH----PITEEITGID---LIVRQIRIA 318 >ref|NP_312155.1| (NC_002695) acetyl CoA carboxylase biotin carboxylase subunit [Escherichia coli O157:H7] dbj|BAB37551.1| (AP002564) acetyl CoA carboxylase biotin carboxylase subunit [Escherichia coli O157:H7] Length = 449 Score = 210 bits (534), Expect = 2e-53 Identities = 52/330 (15%), Positives = 107/330 (31%), Gaps = 25/330 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ L + + + + + D H+ L + P + I Sbjct: 4 KIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNI 63 Query: 89 D-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + + I P +G L E+ + + + F+G DK Sbjct: 64 PAIISAAEITGAVAIHPG-YGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAA 122 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ---- 203 ++ AG+ P + + + + ++G P+ +K + G G+ V + + Sbjct: 123 MKKAGVPCVPGSDGPLGDDMDKN-RAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQS 181 Query: 204 --YAIAVDLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A A + V +E+ ++ R +E VL + + E K Sbjct: 182 ISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNSIYLAER--DCSMQRRHQKV 239 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E I PE+ I +A +G G + E E+NT Sbjct: 240 VEE-----APAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF-ENGEFYFIEMNTRI 293 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELA 350 + P +G+ LI + +A Sbjct: 294 QVEH----PVTEMITGVD---LIKEQLRIA 316 >gb|AAG10491.1|AF279106_53 (AF279106) predicted acetyl-CoA carboxylase, biotin carboxylase [uncultured proteobacterium EBAC31A08] Length = 447 Score = 209 bits (533), Expect = 2e-53 Identities = 57/326 (17%), Positives = 110/326 (33%), Gaps = 22/326 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV-PGKHEHQL 87 + +R ++ L I + + S Y D H+ + P + + Sbjct: 4 KVLIANRGEIALRAIRACKELGIKTVSVYSEADKDLKHLRFSDETVCIGPASPTQSYLNI 63 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + L + + I+P +G L ED + M + F+G DK K L Sbjct: 64 PAILSAAELTSANAIYPG-YGFLAEDHNFAEMCEKSGFKFIGPTSETIQKMGDKITAKTL 122 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 +G+ I P + ++ F ++ +G P+ +K G G+ V EE Sbjct: 123 AEKSGIQIVPGYKDEIPSDND-EFKKIARDIGYPIMIKATAGGGGRGMRVVEREEDLIGH 181 Query: 208 VDLAFE------FDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 ++ + + + +E+ I R IE ++G+ +A G K Sbjct: 182 AEITMQEAKNGFGNETIYLEKFIGNPRHIEVQIVGDGKGKAIHLGTR--DCSMQRRHQKI 239 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 I+E I E +K V + + G+ ++ +N+ E+NT Sbjct: 240 IEE-----APALNINQEALNKTLIACVNLCEEINYEGVGTIEFLY-EDNQFYFIEMNTRI 293 Query: 321 GFTNISMYPKLWQASGLGYTDLITRL 346 + P +G R+ Sbjct: 294 QVEH----PVTEMITGFDLVKAQLRI 315 >ref|NP_289824.1| (NC_002655) acetyl CoA carboxylase, biotin carboxylase subunit [Escherichia coli O157:H7 EDL933] gb|AAG58384.1|AE005553_6 (AE005553) acetyl CoA carboxylase, biotin carboxylase subunit [Escherichia coli O157:H7 EDL933] Length = 449 Score = 209 bits (533), Expect = 3e-53 Identities = 52/330 (15%), Positives = 106/330 (31%), Gaps = 25/330 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ L + + + + + D H+ L + P + I Sbjct: 4 KIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNI 63 Query: 89 D-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + + I P +G L E+ + + + F+G DK Sbjct: 64 PAIISAAEITGAVAIHPG-YGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAA 122 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ---- 203 ++ AG+ P + + + + ++G P+ +K + G G+ V + + Sbjct: 123 MKKAGVPCVPGSDGPLGDDMDKN-RAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQS 181 Query: 204 --YAIAVDLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A A + V +E+ ++ R +E VL + E K Sbjct: 182 ISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNXIYLAER--DCSMQRRHQKV 239 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E I PE+ I +A +G G + E E+NT Sbjct: 240 VEE-----APAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF-ENGEFYFIEMNTRI 293 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELA 350 + P +G+ LI + +A Sbjct: 294 QVEH----PVTEMITGVD---LIKEQLRIA 316 >gb|AAA23748.1| (M79446) biotin carboxylase [Escherichia coli] Length = 449 Score = 209 bits (533), Expect = 3e-53 Identities = 53/334 (15%), Positives = 108/334 (31%), Gaps = 25/334 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ L + + + + + D H+ L + P + I Sbjct: 4 KIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNI 63 Query: 89 D-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + + I P +G L E+ + + + F+G DK Sbjct: 64 PAIISAAEITGAVAIHPG-YGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAA 122 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ---- 203 ++ AG+ P + + + + ++G P+ +K + G G+ V + + Sbjct: 123 MKKAGVPCVPGSDGPLGDDMDKN-RAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQS 181 Query: 204 --YAIAVDLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A A + V +E+ ++ R +E VL + A E K Sbjct: 182 ISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAER--DCSMQRRHQKV 239 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E I PE+ I +A +G G + E E+NT Sbjct: 240 VEE-----APAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF-ENGEFYFIEMNTRI 293 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 + P +G+ LI + +A + Sbjct: 294 QVEH----PVTEMITGVD---LIKEQMRIAAGQP 320 >ref|NP_242487.1| (NC_002570) D-alanyl-D-alanine ligase A [Bacillus halodurans] dbj|BAB05340.1| (AP001512) D-alanyl-D-alanine ligase A [Bacillus halodurans] Length = 305 Score = 209 bits (532), Expect = 3e-53 Identities = 100/352 (28%), Positives = 168/352 (47%), Gaps = 49/352 (13%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ +++GG SAE EVSL S K I++A+ + +V+ + Sbjct: 1 MKIAVLYGGTSAEREVSLSSGKGIMEALKANGHEVIGIDFHPD----------------- 43 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 VD++F +HG LGEDG +Q +L + Sbjct: 44 --------------------------QVRDLVDLDVDLVFIGLHGRLGEDGKVQALLDLL 77 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 N+P+VG+ V SA MDK K AG+ +A + L P+ Sbjct: 78 NIPYVGTGVQGSALAMDKAKAKLFFEKAGIRVAEEVVLHSF---TYDANAFNFTGTYPVV 134 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGN-DNPQAS 242 VKP +GS++G++ +EE+ ++ AF D +++E+ I G E+ AVLGN ++ Sbjct: 135 VKPNQEGSTIGLTVAETEEELLQGIEEAFRHDDTILIEEFIAGTEVTVAVLGNKGEERSL 194 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 EIV + Y Y++KY ++ +VPA I+ E ++ AV+A+Q LGC +RVD Sbjct: 195 PVVEIVPKNKLYDYESKYAPGM-SEHIVPARISEEHTAYVQQAAVRAHQALGCDVYSRVD 253 Query: 303 VFLTPEN-EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 + + + VI ++NTLPG T S+YP + G+ Y ++I + L+L++ Sbjct: 254 FIVPNDGSDPVILKVNTLPGMTPTSLYPDAAKGVGMSYEEMIQTFVNLSLKK 305 >gb|AAD25800.1|AC006550_8 (AC006550) Identical to gb|U12536 3-methylcrotonyl-CoA carboxylase precursor protein from Arabidopsis thaliana. ESTs gb|H35836, gb|AA651295 and gb|AA721862 come from this gene Length = 730 Score = 209 bits (532), Expect = 3e-53 Identities = 54/333 (16%), Positives = 112/333 (33%), Gaps = 30/333 (9%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HEH 85 I + +R ++ + + + + Y D H+ A + + Sbjct: 38 IEKILVANRGEIACRIMRTAKRLGIQTVAVYSDADRDSLHVKSADEAVRIGPPSARLSYL 97 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + I P +G L E + + L F+G A DK +K Sbjct: 98 SGVTIMEAAARTGAQAIHPG-YGFLSESSDFAQLCEDSGLTFIGPPASAIRDMGDKSASK 156 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 R++ AG+ + P + ++ K+G P+ +KP + G G+ V S + +A Sbjct: 157 RIMGAAGVPLVPGYHGHEQDIDHM--KSEAEKIGYPIIIKPTHGGGGKGMRIVQSGKDFA 214 Query: 206 IAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 + A + +++E+ I + R IE V+ + E ++ D + Sbjct: 215 DSFLGAQREAAASFGVNTILLEKYITRPRHIEVQVVSREISCCFFFHERLIFGDKHGNVL 274 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEIN 317 + D + + + + I +A +G V+ + ++ E+N Sbjct: 275 HLYERDCS-----------VQRRHQKIIEEAPAAVGYYNAGTVEFIVDTESDQFYFMEMN 323 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 T + P G L+ I +A Sbjct: 324 TRLQVEH----PVTEMIVGQD---LVEWQIRVA 349 >gb|AAD37851.1|AF126429_1 (AF126429) JadJ [Streptomyces venezuelae] Length = 584 Score = 209 bits (531), Expect = 4e-53 Identities = 50/333 (15%), Positives = 101/333 (30%), Gaps = 23/333 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV-PGKHEHQL 87 + +R ++ + + + Y D H+ A +L P + Sbjct: 3 KVLIANRGEIAVRVARACRDAGIGSVAVYAEPDRDALHVRAADEAFALGGDTPATSYLDM 62 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 D + P +G L E+ + A L ++G A DK + + Sbjct: 63 AKVLQAAADSGADAVHPG-YGFLSENAEFAQAVLDAGLTWIGPPPQAIRDLGDKVAARHI 121 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + AG + + + GLP+ +K A G G+ + E+ Sbjct: 122 AQRAGAPLVAGTPDPVSGADE--VVAFAEEHGLPIAIKAAFGGGGRGLKVARTLEEVPEL 179 Query: 208 VDLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 D A + VE+ + R +E L + + K Sbjct: 180 YDSAVREAVAAFGRGECFVERYLDKPRHVETQCLADQHGNVVVVSTR--DCSLQRRHQKL 237 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E ++ N ++ A + + G G V+ + + + E+NT Sbjct: 238 VEE-----APAPFLSEAQNAELYAASKAILKEAGYVGAGTVEFLVGTDGTISFLEVNTRL 292 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELALER 353 + P + +G+ + R I E Sbjct: 293 QVEH----PVTEEVTGIDLVREMFR-IADGEEL 320 >ref|NP_519642.1| (NC_003295) PROBABLE CARBAMOYL-PHOSPHATE SYNTHASE (LARGE CHAIN) PROTEIN [Ralstonia solanacearum] emb|CAD15223.1| (AL646065) PROBABLE CARBAMOYL-PHOSPHATE SYNTHASE (LARGE CHAIN) PROTEIN [Ralstonia solanacearum] Length = 1081 Score = 209 bits (531), Expect = 5e-53 Identities = 54/359 (15%), Positives = 120/359 (33%), Gaps = 54/359 (15%) Query: 2 EKLRVGIVFGGKSA-----EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 E+ ++ ++ GG + E + A A+ + ++ +++ + + D S Sbjct: 562 ERKKIMVLGGGPNRIGQGIEFDYCCVHA---ALALREDGYETIMVNCNPETVSTDYDTS- 617 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L V + +I GQ L Sbjct: 618 ------DRLYFEPVTLEDVLEIVDKEKPVGVIVQYGGQTPLK-----------------L 654 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L +P +G+ A D++ ++LL D GL P T + ++ Sbjct: 655 ALDLEANGVPIIGTTPDMIDAAEDRERFQKLLHDLGLRQPPNRTARAEDEA----LKLAD 710 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEF--DHKVIVEQGI-KGREIECAV 233 ++G PL V+P+ + V + A + D V++++ + E + Sbjct: 711 EIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDC 770 Query: 234 LGNDN-PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 L + E + + ++ D A + P +++ D+++ + Sbjct: 771 LSDGKRVFIGGVMEHIEQAGVHS-------GDSACSLPPYSLSQATVDELKRQTAAMARA 823 Query: 293 LGCAGMARVDVFLTPENE---VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 L G+ V + + V + E+N T P + +A+G+ + R + Sbjct: 824 LNVIGLMNVQFAIQQKGGEDIVYVLEVNPRASRT----VPYVSKATGISLAKVAARCMA 878 Score = 151 bits (381), Expect = 1e-35 Identities = 47/362 (12%), Positives = 108/362 (28%), Gaps = 55/362 (15%) Query: 4 LR-----VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYL 58 G + G++ E + S A+ + F VVL+ + ++ Sbjct: 8 KTILIIGAGPIIIGQACEFDYS---GAQACKALREEGFKVVLVNSNPATIMTDPSTADVT 64 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ- 117 + D I P + G + +L Sbjct: 65 YIE----------------------PITWEVVERIIAKERPDAILPTMGGQTALNCALDL 102 Query: 118 ---GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 G+L N+ +G+ A D+ K + GL A A++ Sbjct: 103 HRHGVLEKYNVELIGASPEAIDKAEDRQKFKEAMTKIGLGSAKSGIAHSLEEALAVQAQI 162 Query: 175 ESK---LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKG-RE 228 + G P+ ++P+ G + E++ + ++++E+ + G +E Sbjct: 163 ARETSSGGYPIVIRPSFTLGGTGGGIAYNREEFEDICKRGLDLSPTNELLIEESLLGWKE 222 Query: 229 IECAVLGNDNPQASTC--GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIA 286 E V+ + E + + D V + + +R + Sbjct: 223 YEMEVVRDKKDNCIIVCSIENLDPMGIHT-------GDSITVAPAQTLTDKEYQILRNAS 275 Query: 287 VQAYQTLGC-AGMARVDV-FLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLIT 344 + + +G G + V + +++ E+N ++ +A+G + Sbjct: 276 LAVLREIGVDTGGSNVQFSINPEDGRMIVIEMNPRVSRSSA----LASKATGFPIAKVAA 331 Query: 345 RL 346 +L Sbjct: 332 KL 333 >ref|NP_246444.1| (NC_002663) CarB [Pasteurella multocida] gb|AAK03589.1| (AE006187) CarB [Pasteurella multocida] Length = 1068 Score = 209 bits (531), Expect = 5e-53 Identities = 55/368 (14%), Positives = 127/368 (33%), Gaps = 54/368 (14%) Query: 2 EKLRVGIVFGGKSA-----EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 +K ++ I+ GG + E + A A+ ++ F+ +++ + + D S Sbjct: 552 DKKKIMILGGGPNRIGQGIEFDYCCVHAS---LALREAGFETIMVNCNPETVSTDFDTS- 607 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L + + H +I GQ L Sbjct: 608 ------DRLYFEPLTLEDVLEIIHVEKPHGVIVHYGGQTPLK-----------------L 644 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L + +G+ + A D++ +++L L T A ++ Sbjct: 645 ANDLHANGVNIIGTSADSIDAAEDRERFQQILHKLHLKQPTNRTARNAEEAV----KLAE 700 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEF--DHKVIVEQGI-KGREIECAV 233 ++G PL V+P+ + V + ++ + A D ++++ + E++ Sbjct: 701 EVGYPLVVRPSYVLGGRAMQIVYNVDELQRYMREAVSVSNDSPILLDHFLNNAIEVDVDC 760 Query: 234 LGND-NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + + + + + ++ D A + P +++ E+ D+IR + Sbjct: 761 ICDGAEVVIGGIMQHIEQAGIHS-------GDSACSLPPYSLSQEVQDEIRRQTAEMAFA 813 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 LG G+ V + + + + E+N T P + +A+G + R++ A E Sbjct: 814 LGVKGLMNVQFAV-QDGVIYVLEVNPRASRT----VPFVSKATGRPLAKIAARVM--AGE 866 Query: 353 RHAADNAL 360 A Sbjct: 867 SLKAQGIQ 874 Score = 158 bits (399), Expect = 1e-37 Identities = 49/368 (13%), Positives = 119/368 (32%), Gaps = 53/368 (14%) Query: 5 RVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLL 59 + I+ G++ E + S A+ + + VVL+ + D ++ Sbjct: 9 TILIIGAGPIVIGQACEFDYS---GAQACKALREEGYKVVLVNSNPATIMTDPDMADVTY 65 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ-- 117 + + D I P + G + +L Sbjct: 66 IE----------------------PIEWRTVEKIIEKERPDAILPTMGGQTALNCALDLS 103 Query: 118 --GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVE 175 G+L+ N+ +G+ A D+ K + GL+ + Sbjct: 104 KNGVLKKYNVELIGAKEDAIDKAEDRGRFKEAMEKIGLSTPKSFVCHTLEEA----WAAQ 159 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKG-REIECA 232 S++G P ++P+ G +++++ + F+ ++++EQ + G +E E Sbjct: 160 SEVGFPTLIRPSFTMGGSGGGIAYNKDEFYAICERGFDASPTHELLIEQSVLGWKEYEME 219 Query: 233 VLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 V+ + I + + + D V + + +R ++ + Sbjct: 220 VVRDKADNCIIVCSI----ENFDPMGVHT-GDSITVAPAQTLTDKEYQIMRNASIAVLRE 274 Query: 293 LGC-AGMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 +G G + V + E+++ E+N ++ +A+G + +L + Sbjct: 275 IGVDTGGSNVQFAINPENGEMIVIEMNPRVSRSSA----LASKATGFPIAKVAAKL-AVG 329 Query: 351 LERHAADN 358 + N Sbjct: 330 YTLNELRN 337 >ref|NP_214146.1| (NC_000918) biotin carboxylase [Aquifex aeolicus] pir||C70444 biotin carboxylase - Aquifex aeolicus gb|AAC07527.1| (AE000749) biotin carboxylase [Aquifex aeolicus] Length = 444 Score = 209 bits (531), Expect = 5e-53 Identities = 58/342 (16%), Positives = 120/342 (34%), Gaps = 25/342 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA-QVPGKHE 84 + +R ++ + I + + + Y + H+ L A + P K Sbjct: 1 MFKRVLIANRGEIAVRAIRACRELGLKTVAIYSEADKNSLHVELADEAICIGPPDPSKSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + D ++P +G L E+ ++ + F+G A DK + Sbjct: 61 LDIPRIMSALEVSKADAVYPG-YGFLSENPKFAEIVEKSGAKFIGPRSEVLAKIGDKVLA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K++ ++ GL + P ++ SK+G P+ +K A G G+ + E++ Sbjct: 120 KKVAKEVGLPLVPGSDEPLEF---SEAVKLASKIGYPVVIKAAAGGGGRGIRIIRDEKEL 176 Query: 205 AIAVDLAFE------FDHKVIVEQG-IKGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 LA + D ++ +E+ I + IE V+ +++ GE Sbjct: 177 REKFPLAKKEAESAFGDGRLYIEKYVINPKHIEFQVIADEHGNVYVLGER--ECSIQRRH 234 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E +++ E +I + + LG V+ + E E+N Sbjct: 235 QKLIEE-----APSVSVSEEKRKEISEKVAEFCKRLGYTSAGTVEFLMDEEGNFYFMEMN 289 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 + P +G+ L +LI E + Sbjct: 290 GRIQVEH----PVTEMVTGVDIVKL--QLIAAMGEEIKLEKV 325 >ref|NP_274851.1| (NC_003112) carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis MC58] pir||D81035 carbamoyl-phosphate synthase (glutamine-hydrolyzing) (EC 6.3.5.5) large chain NMB1855 [similarity] - Neisseria meningitidis (group B strain MD58) gb|AAF42189.1| (AE002535) carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis MC58] Length = 1071 Score = 208 bits (529), Expect = 8e-53 Identities = 59/356 (16%), Positives = 124/356 (34%), Gaps = 52/356 (14%) Query: 2 EKLRVGIVFGGKSA-----EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 ++ +V I+ GG + E + A A+ +S F+ +++ + + D S Sbjct: 552 DRKKVMILGGGPNRIGQGIEFDYCCVHA---ALALRESGFETIMVNCNPETVSTDFDTS- 607 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L V ++ +I GQ L Sbjct: 608 ------DRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTPLK-----------------L 644 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L + +G+ + A D++ +++L D GL P + Sbjct: 645 ANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVK----AE 700 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEF--DHKVIVEQGI-KGREIECAV 233 ++G PL V+P+ + V S E+ + A + D V+++ + E++ Sbjct: 701 EIGYPLVVRPSYVLGGRAMQVVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDC 760 Query: 234 LGND-NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + + + + V + ++ D + P +++ EI D+IR Sbjct: 761 VSDGKDVVIGGIMQHVEQAGIHS-------GDSGCSLPPYSLSEEIQDEIRRQTKAMAYA 813 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 LG G+ V + + V + E+N T P + +A+G+ + R + Sbjct: 814 LGVVGLMNVQFAV-QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKVGARCMA 864 Score = 156 bits (395), Expect = 3e-37 Identities = 48/357 (13%), Positives = 118/357 (32%), Gaps = 52/357 (14%) Query: 4 LRVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYL 58 + I+ G++ E + S A+ + + V+L+ + + ++ Sbjct: 8 KSILIIGAGPIVIGQACEFDYS---GAQACKALREEGYKVILVNSNPATIMTDPEMADVT 64 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ- 117 + D I P + G + +L Sbjct: 65 YIE----------------------PIMWQTVEKIIAKERPDAILPTMGGQTALNCALDL 102 Query: 118 ---GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 G+L N+ +G+ A D+ K + GL+ N Sbjct: 103 ARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFVCHTMNEA----LAA 158 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKG-REIEC 231 + ++G P ++P+ G +++++ + F+ ++++EQ + G +E E Sbjct: 159 QEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQSVLGWKEYEM 218 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 V+ + N I+ + + + + D V + + +R ++ + Sbjct: 219 EVVRDKNDNCI----IICSIENFDPMGVHT-GDSITVAPAQTLTDKEYQIMRNASLAVLR 273 Query: 292 TLGC-AGMARVDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 +G G + V + P E+++ E+N ++ +A+G + +L Sbjct: 274 EIGVDTGGSNVQFAVNPANGEMIVIEMNPRVSRSSA----LASKATGFPIAKVAAKL 326 >ref|NP_106581.1| (NC_002678) 3-methylcrotonyl-CoA carboxylase biotin-containing subunit [Mesorhizobium loti] dbj|BAB52367.1| (AP003008) 3-methylcrotonyl-CoA carboxylase biotin-containing subunit [Mesorhizobium loti] Length = 653 Score = 208 bits (529), Expect = 8e-53 Identities = 61/340 (17%), Positives = 119/340 (34%), Gaps = 30/340 (8%) Query: 24 AKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKH 83 K + +R ++ I + ++ Y H+A+ A + P Sbjct: 2 GKLFSKILIANRGEIACRVIRTARRLGMATVGVYSDADAKSLHVAMAGEAVHIGASPVAE 61 Query: 84 EHQ-LIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKD 142 + + I P +G L E + A L F+G + A KD Sbjct: 62 SYLKADRIIDAALKTGAQAIHPG-YGFLSEAPDFVERVEAAGLVFIGPSASSIRAMGLKD 120 Query: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEE 202 KRL+ G+ + P + ++ + ++G P+ +K G G+ +V + Sbjct: 121 AAKRLMEITGVPVVPGYHGEAQDPALLASRAI--EIGFPVLIKARAGGGGKGMRRVETAG 178 Query: 203 QYAIAVDLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYA 255 ++A A+ A D KV++E+ ++ R IE V G+++ E Sbjct: 179 EFADALASAQREAKASFGDDKVLIEKYVEKPRHIEVQVFGDNHGNGVHLFER--DCSAQR 236 Query: 256 YDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE-----NE 310 K I+E + PE+ + AV+A + + +G ++ + + Sbjct: 237 RHQKVIEE-----APAPGMTPEMRVAMTHAAVKAAKAINYSGAGTIEFIVDASEGLRADR 291 Query: 311 VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 E+NT + P +G L+ I +A Sbjct: 292 FWFMEMNTRLQVEH----PMTEMVTGQD---LVEWQIRVA 324 >emb|CAC22142.1| (AL512902) putative acyl-CoA carboxylase complex A subunit (fragment) [Streptomyces coelicolor] Length = 492 Score = 208 bits (529), Expect = 8e-53 Identities = 49/333 (14%), Positives = 102/333 (29%), Gaps = 23/333 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV-PGKHEHQL 87 + +R ++ + ++ + Y D H+ A +L P + Sbjct: 3 KVLIANRGEIAVRVARACRDAGIASVAVYADPDRDALHVRAADEAFALGGDTPATSYLDI 62 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 D I P +G L E+ + A L ++G A DK + + Sbjct: 63 AKVLKAARESGADAIHPG-YGFLSENAEFAQAVLDAGLIWIGPPPHAIRDLGDKVAARHI 121 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + AG + + + GLP+ +K A G G+ + E+ Sbjct: 122 AQRAGAPLVAGTPDPVSGADE--VVAFAKEHGLPIAIKAAFGGGGRGLKVARTLEEVPEL 179 Query: 208 VDLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 D A + VE+ + R +E L + + K Sbjct: 180 YDSAVREAVAAFGRGECFVERYLDKPRHVETQCLADTHGNVVVVSTR--DCSLQRRHQKL 237 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E ++ +++ + + + G G V+ + + + E+NT Sbjct: 238 VEE-----APAPFLSEAQTEQLYSSSKAILKEAGYVGAGTVEFLVGMDGTISFLEVNTRL 292 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELALER 353 + P + +G+ + R I E Sbjct: 293 QVEH----PVTEEVAGIDLVREMFR-IADGEEL 320 >pdb|1DV2|A Chain A, The Structure Of Biotin Carboxylase, Mutant E288k, Complexed With Atp pdb|1DV2|B Chain B, The Structure Of Biotin Carboxylase, Mutant E288k, Complexed With Atp Length = 452 Score = 207 bits (528), Expect = 1e-52 Identities = 52/330 (15%), Positives = 107/330 (31%), Gaps = 25/330 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ L + + + + + D H+ L + P + I Sbjct: 7 KIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNI 66 Query: 89 D-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + + I P +G L E+ + + + F+G DK Sbjct: 67 PAIISAAEITGAVAIHPG-YGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAA 125 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ---- 203 ++ AG+ P + + + + ++G P+ +K + G G+ V + + Sbjct: 126 MKKAGVPCVPGSDGPLGDDMDKN-RAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQS 184 Query: 204 --YAIAVDLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A A + V +E+ ++ R +E VL + A E K Sbjct: 185 ISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAER--DCSMQRRHQKV 242 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E I PE+ I +A +G G + E ++NT Sbjct: 243 VEE-----APAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF-ENGEFYFIKMNTRI 296 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELA 350 + P +G+ LI + +A Sbjct: 297 QVEH----PVTEMITGVD---LIKEQLRIA 319 >gb|AAL02056.1|AF294805_1 (AF294805) acetyl-coenzyme A carboxylase [Setaria italica] Length = 2321 Score = 207 bits (528), Expect = 1e-52 Identities = 55/361 (15%), Positives = 100/361 (27%), Gaps = 40/361 (11%) Query: 10 FGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIAL 69 GGK+ H S+ A N + A R V D G D + Sbjct: 126 LGGKTPIH--SILVANNGMAAAKFMR-SVRTWANDTFGSEKAIQLIAMATPEDMRINAEH 182 Query: 70 RPSATSLAQVPG----KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 A +VPG + + V ++P G E+ L L + Sbjct: 183 IRIADQFVEVPGGTNNNNYANVQLIVEVAERIGVSAVWPG-WGHASENPELPDALTAKGI 241 Query: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK-------- 177 F+G + A DK + + + AG+ + + + Sbjct: 242 VFLGPPAASMNALGDKVGSALIAQAAGVPTLSWSGSHVEVPLECCLDAIPEEMYRKACVT 301 Query: 178 -----------LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDL---AFEFDHKVIVEQG 223 +G P +K + G G+ KV ++++ I+ Sbjct: 302 TTEEAVASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMRLA 361 Query: 224 IKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIR 283 + R +E +L + + K I+E V E + Sbjct: 362 SQSRHLEVQLLCDQYGNVAALHSR--DCSVQRRHQKIIEEGPVTVAPR-----ETVKALE 414 Query: 284 AIAVQAYQTLGCAGMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDL 342 A + + +G G A V+ + E E+N + + L + Sbjct: 415 QAARRLAKAVGYVGAATVEYLYSMETGEYYFLELNPRLQVEH--PVTEWIAEVNLPAAQV 472 Query: 343 I 343 Sbjct: 473 A 473 >pir||T06161 acetyl-CoA carboxylase (EC 6.4.1.2) - wheat gb|AAC39330.1| (AF029895) acetyl-coenzyme A carboxylase [Triticum aestivum] Length = 2311 Score = 207 bits (528), Expect = 1e-52 Identities = 55/365 (15%), Positives = 104/365 (28%), Gaps = 40/365 (10%) Query: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 + GGK+ H S+ A N + A R V + G D Sbjct: 122 FCMALGGKTPIH--SVLVANNGMAAAKFMR-SVRTWANETFGSEKAIQLIAMATPEDMRI 178 Query: 66 HIALRPSATSLAQVPG----KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 + A +VPG + + V ++P G E+ L L Sbjct: 179 NAEHIRIADQFVEVPGGTNNNNYANVQLIVEIAVRTGVSAVWPG-WGHASENPELPDALN 237 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK---- 177 + F+G + A DK + + + AG+ P+ + + ++ Sbjct: 238 ANGIVFLGPPSSSMNALGDKVGSALIAQAAGVPTLPWSGSQVEIPLEVCLDSIPAEMYRK 297 Query: 178 ---------------LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDL---AFEFDHKVI 219 +G P +K + G G+ KV +++ I Sbjct: 298 ACVSTTEEALASCQMIGYPAMIKASWGGGGKGIRKVNNDDDVRALFKQVQGEVPGSPIFI 357 Query: 220 VEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEIN 279 + + R +E +L + + K I+E V E Sbjct: 358 MRLASQSRHLEVQLLCDQYGNVAALHSR--DCSVQRRHQKIIEEGPVTVAPR-----ETV 410 Query: 280 DKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLG 338 ++ A + + +G G A V+ + E E+N + + L Sbjct: 411 KELEQAARRLAKAVGYVGAATVEYLYSMETGEYYFLELNPRLQVEH--PVTEWIAEVNLP 468 Query: 339 YTDLI 343 + Sbjct: 469 AAQVA 473 >ref|NP_283414.1| (NC_003116) carbamoyl phosphate synthase large subunit [Neisseria meningitidis Z2491] pir||F81979 carbamoyl-phosphate synthase (glutamine-hydrolyzing) (EC 6.3.5.5) large chain NMA0602 [imported] - Neisseria meningitidis (group A strain Z2491) emb|CAB83892.1| (AL162753) carbamoyl phosphate synthase large subunit [Neisseria meningitidis Z2491] Length = 1071 Score = 207 bits (527), Expect = 1e-52 Identities = 60/356 (16%), Positives = 124/356 (33%), Gaps = 52/356 (14%) Query: 2 EKLRVGIVFGGKSA-----EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 ++ +V I+ GG + E + A A+ +S F+ +++ + + D S Sbjct: 552 DRKKVMILGGGPNRIGQGIEFDYCCVHA---ALALRESGFETIMVNCNPETVSTDFDTS- 607 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L V ++ +I GQ L Sbjct: 608 ------DRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTPLK-----------------L 644 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L + +G+ + A D++ +++L D GL P + Sbjct: 645 ANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVK----AE 700 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEF--DHKVIVEQGI-KGREIECAV 233 ++G PL V+P+ + V S EQ + A + D V+++ + E++ Sbjct: 701 EIGYPLVVRPSYVLGGRAMQIVHSAEQLQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDC 760 Query: 234 LGND-NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + + + + V + ++ D + P +++ EI D+IR Sbjct: 761 VSDGKDVVIGGIMQHVEQAGIHS-------GDSGCSLPPYSLSEEIQDEIRRQTKAMAYA 813 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 LG G+ V + + V + E+N T P + +A+G+ + R + Sbjct: 814 LGVVGLMNVQFAV-QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKVGARCMA 864 Score = 156 bits (395), Expect = 3e-37 Identities = 47/357 (13%), Positives = 117/357 (32%), Gaps = 52/357 (14%) Query: 4 LRVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYL 58 + I+ G++ E + S A+ + + V+L+ + + ++ Sbjct: 8 KSILIIGAGPIVIGQACEFDYS---GAQACKALREEGYKVILVNSNPATIMTDPEMADVT 64 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ- 117 + D I P + G + +L Sbjct: 65 YIE----------------------PIMWQTVEKIIAKERPDAILPTMGGQTALNCALDL 102 Query: 118 ---GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 G+L N+ +G+ A D+ K + GL+ N Sbjct: 103 ARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFVCHTMNEA----LAA 158 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKG-REIEC 231 + ++G P ++P+ G +++++ + F+ ++++EQ + G +E E Sbjct: 159 QEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQSVLGWKEYEM 218 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 V+ + N I+ + + + + D V + + +R ++ + Sbjct: 219 EVVRDKNDNCI----IICSIENFDPMGVHT-GDSITVAPAQTLTDKEYQIMRNASLAVLR 273 Query: 292 TLGC-AGMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 +G G + V + E+++ E+N ++ +A+G + +L Sbjct: 274 EIGVDTGGSNVQFAVNPENGEMIVIEMNPRVSRSSA----LASKATGFPIAKVAAKL 326 >emb|CAC21629.1| (AL512667) putative acyl-CoA carboxylase complex A subunit [Streptomyces coelicolor] Length = 590 Score = 207 bits (526), Expect = 2e-52 Identities = 49/333 (14%), Positives = 102/333 (29%), Gaps = 23/333 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV-PGKHEHQL 87 + +R ++ + ++ + Y D H+ A +L P + Sbjct: 3 KVLIANRGEIAVRVARACRDAGIASVAVYADPDRDALHVRAADEAFALGGDTPATSYLDI 62 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 D I P +G L E+ + A L ++G A DK + + Sbjct: 63 AKVLKAARESGADAIHPG-YGFLSENAEFAQAVLDAGLIWIGPPPHAIRDLGDKVAARHI 121 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + AG + + + GLP+ +K A G G+ + E+ Sbjct: 122 AQRAGAPLVAGTPDPVSGADE--VVAFAKEHGLPIAIKAAFGGGGRGLKVARTLEEVPEL 179 Query: 208 VDLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 D A + VE+ + R +E L + + K Sbjct: 180 YDSAVREAVAAFGRGECFVERYLDKPRHVETQCLADTHGNVVVVSTR--DCSLQRRHQKL 237 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E ++ +++ + + + G G V+ + + + E+NT Sbjct: 238 VEE-----APAPFLSEAQTEQLYSSSKAILKEAGYVGAGTVEFLVGMDGTISFLEVNTRL 292 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELALER 353 + P + +G+ + R I E Sbjct: 293 QVEH----PVTEEVAGIDLVREMFR-IADGEEL 320 >ref|NP_454677.1| (NC_003198) carbamoyl-phosphate synthase large chain [Salmonella enterica subsp. enterica serovar Typhi] emb|CAD01221.1| (AL627265) carbamoyl-phosphate synthase large chain [Salmonella enterica subsp. enterica serovar Typhi] Length = 1075 Score = 207 bits (526), Expect = 2e-52 Identities = 55/356 (15%), Positives = 119/356 (32%), Gaps = 52/356 (14%) Query: 2 EKLRVGIVFGGKSA-----EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 ++ ++ ++ GG + E + A A+ + ++ +++ + + D S Sbjct: 558 DRDKIMVLGGGPNRIGQGIEFDYCCVHAS---LALREDGYETIMVNCNPETVSTDYDTS- 613 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L V + +I GQ L Sbjct: 614 ------DRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLK-----------------L 650 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L A +P +G+ A D++ + + L T+T + E Sbjct: 651 ARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAV----EKAK 706 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEF--DHKVIVEQGI-KGREIECAV 233 ++G PL V+P+ + V E A D V++++ + E++ Sbjct: 707 EIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDA 766 Query: 234 LGNDN-PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + + E + + ++ D A + ++ EI D +R + Sbjct: 767 ICDGEMVLIGGIMEHIEQAGVHS-------GDSACSLPAYTLSQEIQDVMRQQVQKLAFE 819 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 L G+ V + +NEV + E+N T P + +A+G+ + R++ Sbjct: 820 LQVRGLMNVQFAV-KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAARVMA 870 Score = 163 bits (412), Expect = 3e-39 Identities = 43/357 (12%), Positives = 112/357 (31%), Gaps = 52/357 (14%) Query: 4 LRVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYL 58 + I+ G++ E + S A+ + + V+L+ + + ++ Sbjct: 8 KSILILGAGPIVIGQACEFDYS---GAQACKALREEGYRVILVNSNPATIMTDPEMADAT 64 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL-- 116 + D + P + G + +L Sbjct: 65 YIE----------------------PIHWEVVRKIIEKERPDAVLPTMGGQTALNCALEL 102 Query: 117 --QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 QG+L + +G+ A D+ ++ GL+ A V Sbjct: 103 ERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGIAHTMEEA----LAV 158 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKG-REIEC 231 + +G P ++P+ G + E++ + + ++++++ + G +E E Sbjct: 159 AADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDESLIGWKEYEM 218 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 V+ + N I + + + D V + + +R ++ + Sbjct: 219 EVVRDKNDNCIIVCSI----ENFDAMGIHT-GDSITVAPAQTLTDKEYQIMRNASMAVLR 273 Query: 292 TLGC-AGMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 +G G + V + +++ E+N ++ +A+G + +L Sbjct: 274 EIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSA----LASKATGFPIAKVAAKL 326 >sp|P14846|CARB_SALTY CARBAMOYL-PHOSPHATE SYNTHASE LARGE CHAIN (CARBAMOYL-PHOSPHATE SYNTHETASE AMMONIA CHAIN) gb|AAB39256.1| (U81260) carbamoylphosphate synthetase large subunit [Salmonella typhimurium] Length = 1075 Score = 206 bits (525), Expect = 2e-52 Identities = 55/356 (15%), Positives = 119/356 (32%), Gaps = 52/356 (14%) Query: 2 EKLRVGIVFGGKSA-----EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 ++ ++ ++ GG + E + A A+ + ++ +++ + + D S Sbjct: 558 DRDKIMVLGGGPNRIGQGIEFDYCCVHAS---LALREDGYETIMVNCNPETVSTDYDTS- 613 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L V + +I GQ L Sbjct: 614 ------DRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLK-----------------L 650 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L A +P +G+ A D++ + + L T+T + E Sbjct: 651 ARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAV----EKAK 706 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEF--DHKVIVEQGI-KGREIECAV 233 ++G PL V+P+ + V E A D V++++ + E++ Sbjct: 707 EIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDA 766 Query: 234 LGNDN-PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + + E + + ++ D A + ++ EI D +R + Sbjct: 767 ICDGEMVLIGGIMEHIEQAGVHS-------GDSACSLPAYTLSQEIQDVMRQQVQKLAFE 819 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 L G+ V + +NEV + E+N T P + +A+G+ + R++ Sbjct: 820 LQVRGLMNVQFAV-KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAARVMA 870 Score = 159 bits (403), Expect = 3e-38 Identities = 43/357 (12%), Positives = 112/357 (31%), Gaps = 52/357 (14%) Query: 4 LRVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYL 58 + I+ G++ E + S A+ + + V+L+ + + ++ Sbjct: 8 KSILILGAGPIVIGQACEFDYS---GAQACKALREEGYRVILVNSNPATIMTDPEMADAT 64 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL-- 116 + D + P + G + +L Sbjct: 65 YIE----------------------PIHWEVVRKIIEKERPDAVLPTMGGQTALNCALEL 102 Query: 117 --QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 QG+L + +G+ A D+ ++ GL+ A V Sbjct: 103 ERQGVLEEFGVTMIGATADAGDKAEDRRRFDIAMKKIGLDTARSGIAHTMEEA----LAV 158 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKG-REIEC 231 + +G P ++P+ G + E++ + + ++++++ + G +E E Sbjct: 159 AADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDESLIGWKEYEM 218 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 V+ + N I + + + D V + + +R ++ + Sbjct: 219 EVVRDKNDNCIIVCSI----ENFDAMGIHT-GDSITVAPAQTLTDKEYQIMRNASMAVLR 273 Query: 292 TLGC-AGMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 +G G + V + +++ E+N ++ +A+G + +L Sbjct: 274 EIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSA----LASKATGFPIAKVAAKL 326 >ref|NP_459072.1| (NC_003197) carbamoyl-phosphate synthase, large subunit [Salmonella typhimurium LT2] gb|AAL19031.1| (AE008696) carbamoyl-phosphate synthase, large subunit [Salmonella typhimurium LT2] Length = 1075 Score = 206 bits (525), Expect = 2e-52 Identities = 55/356 (15%), Positives = 119/356 (32%), Gaps = 52/356 (14%) Query: 2 EKLRVGIVFGGKSA-----EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 ++ ++ ++ GG + E + A A+ + ++ +++ + + D S Sbjct: 558 DRDKIMVLGGGPNRIGQGIEFDYCCVHAS---LALREDGYETIMVNCNPETVSTDYDTS- 613 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L V + +I GQ L Sbjct: 614 ------DRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLK-----------------L 650 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L A +P +G+ A D++ + + L T+T + E Sbjct: 651 ARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAV----EKAK 706 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEF--DHKVIVEQGI-KGREIECAV 233 ++G PL V+P+ + V E A D V++++ + E++ Sbjct: 707 EIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDA 766 Query: 234 LGNDN-PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + + E + + ++ D A + ++ EI D +R + Sbjct: 767 ICDGEMVLIGGIMEHIEQAGVHS-------GDSACSLPAYTLSQEIQDVMRQQVQKLAFE 819 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 L G+ V + +NEV + E+N T P + +A+G+ + R++ Sbjct: 820 LQVRGLMNVQFAV-KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAARVMA 870 Score = 162 bits (411), Expect = 4e-39 Identities = 43/357 (12%), Positives = 112/357 (31%), Gaps = 52/357 (14%) Query: 4 LRVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYL 58 + I+ G++ E + S A+ + + V+L+ + + ++ Sbjct: 8 KSILILGAGPIVIGQACEFDYS---GAQACKALREEGYRVILVNSNPATIMTDPEMADAT 64 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL-- 116 + D + P + G + +L Sbjct: 65 YIE----------------------PIHWEVVRKIIEKERPDAVLPTMGGQTALNCALEL 102 Query: 117 --QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 QG+L + +G+ A D+ ++ GL+ A V Sbjct: 103 ERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGIAHTMEEA----LAV 158 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKG-REIEC 231 + +G P ++P+ G + E++ + + ++++++ + G +E E Sbjct: 159 AADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDESLIGWKEYEM 218 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 V+ + N I + + + D V + + +R ++ + Sbjct: 219 EVVRDKNDNCIIVCSI----ENFDAMGIHT-GDSITVAPAQTLTDKEYQIMRNASMAVLR 273 Query: 292 TLGC-AGMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 +G G + V + +++ E+N ++ +A+G + +L Sbjct: 274 EIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSA----LASKATGFPIAKVAAKL 326 >sp|Q9TTS3|COA1_BOVIN ACETYL-COA CARBOXYLASE 1 (ACC-ALPHA) [INCLUDES: BIOTIN CARBOXYLASE ] emb|CAB56826.1| (AJ132890) acetyl-CoA-carboxylase [Bos taurus] Length = 2346 Score = 206 bits (525), Expect = 3e-52 Identities = 47/364 (12%), Positives = 112/364 (29%), Gaps = 45/364 (12%) Query: 24 AKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKH 83 A + +I + ++ + ++ ++ V L + +I + + P + Sbjct: 130 AVKCMRSIRRWSYE--MFRNERAIRFVVMVTPEDLKANAE--YIKMADHYVPVPGGPNNN 185 Query: 84 EH-QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKD 142 + + + V ++ G E+ L +L + F+G A A DK Sbjct: 186 NYANVELILDIAKRIPVQAVWAG-WGHASENPKLPELLLKNGIAFMGPPSQAMWALGDKI 244 Query: 143 VTKRLLRDAGLNIAPFI----------------TLTRANR--------HNISFAEVESKL 178 + + + AG+ P+ L + ++ Sbjct: 245 ASSIVAQTAGIPTLPWSGSGLCVDWHENDFSKRILNVPQELYEKGYVKDVDDGLKAAEEV 304 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYA---IAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 G P+ +K + G G+ KV + + + V ++ + R +E +L Sbjct: 305 GYPVMIKASEGGGGKGIRKVNNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILA 364 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 + A + K I+E A + PA + + + AV+ + +G Sbjct: 365 DQYGNAISLFGR--DCSVQRRHQKIIEEAPAAIATPA-----VFEHMEQCAVKLARMVGY 417 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 V+ + + E+N + P + + I + + + Sbjct: 418 VSAGTVEYLYSQDGSFYFLELNPRLQVEH----PCTEMVADVNLPA-AQLQIAMGIPLYR 472 Query: 356 ADNA 359 + Sbjct: 473 IKDI 476 >gb|AAF16526.1|AF191301_2 (AF191301) ADP-forming, carbamate-phosphorylating [Medicago sativa] Length = 1072 Score = 206 bits (525), Expect = 3e-52 Identities = 50/354 (14%), Positives = 118/354 (33%), Gaps = 52/354 (14%) Query: 2 EKLRVGIVFGGKSA-----EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 +K ++ ++ GG + E + A A+ + ++ +++ + + D S Sbjct: 557 DKKKILVIGGGPNRIGQGIEFDYCCVHA---ALAMREDGYETIMVNCNPETVSTDYDTS- 612 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D L V + +I GQ L Sbjct: 613 ------DRLFFEPVTLEDVLEIVHKEKPVGVIVQFGGQTPLK-----------------L 649 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L +P +G+ A D++ ++++ GL P + ++ Sbjct: 650 ARALEAEGVPIIGTSPDAIDKAEDRERFQQMINKLGLLQPPNAIVRSLEEALLA----AD 705 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEF--DHKVIVEQGI-KGREIECAV 233 K+G PL V+P+ + V E++ + A + D V+++ + E++ Sbjct: 706 KVGYPLVVRPSYVLGGRAMEIVYKEDELRTYMRTAVQVSEDAPVLLDHFLNNAIEVDIDS 765 Query: 234 LGNDNPQAS-TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + + + + ++ D A + P ++ ++ D +R I + Sbjct: 766 VSDGKQVVIGGIMQHIEQCGVHS-------GDSACSLPPYSLPADVQDDMREIVKKMAIE 818 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 LG G+ + + ++ + E+N T P + + G+ + R Sbjct: 819 LGVIGLMNTQLAY-QDGKIYVIEVNPRASRT----VPFVSKCIGVSLAKVAARC 867 Score = 160 bits (404), Expect = 2e-38 Identities = 46/355 (12%), Positives = 116/355 (31%), Gaps = 52/355 (14%) Query: 6 VGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 + I+ G++ E + S A+ + + V+L+ + ++ Sbjct: 10 ILILGAGPIVIGQACEFDYS---GAQACKALREEGYRVILVNSNPATIMTDPAMADATYI 66 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ--- 117 + DVI P + G + +L Sbjct: 67 E----------------------PIEWQTVAKIIEKERPDVILPTMGGQTALNCALALAK 104 Query: 118 -GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 G+L N+ +G+ A D+++ + ++ GL+ A + E Sbjct: 105 NGVLEKYNVELIGAKEEAINMAEDRNLFDQAMKRIGLSCARAKIVHTLEEAK----EAPK 160 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKG-REIECAV 233 + G P ++P+ G + +++ + ++++++ + G +E E V Sbjct: 161 EFGFPCIIRPSFTMGGSGGGIAYNWDEFEEICTRGLDLSPTNELLIDESLLGWKEYEMEV 220 Query: 234 LGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 + + N I + + + D V + + +R ++ + + Sbjct: 221 VRDKNDNCIIVCSI----ENFDPMGVHT-GDSITVAPAQTLTDKEYQIMRNASIAVLREI 275 Query: 294 GC-AGMARVDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 G G + V + P + +V+ E+N ++ +A+G + +L Sbjct: 276 GVETGGSNVQFAVNPVDGRMVVIEMNPRVSRSSA----LASKATGFPIAKIAAKL 326 >pdb|1CE8|A Chain A, Carbamoyl Phosphate Synthetase From Escherichis Coli With Complexed With The Allosteric Ligand Imp pdb|1CE8|C Chain C, Carbamoyl Phosphate Synthetase From Escherichis Coli With Complexed With The Allosteric Ligand Imp pdb|1CE8|E Chain E, Carbamoyl Phosphate Synthetase From Escherichis Coli With Complexed With The Allosteric Ligand Imp pdb|1CE8|G Chain G, Carbamoyl Phosphate Synthetase From Escherichis Coli With Complexed With The Allosteric Ligand Imp Length = 1073 Score = 206 bits (524), Expect = 3e-52 Identities = 58/369 (15%), Positives = 120/369 (31%), Gaps = 54/369 (14%) Query: 2 EKLRVGIVFGGKSA-----EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 ++ ++ ++ GG + E + A A+ + ++ +++ + + D S Sbjct: 558 DREKIMVLGGGPNRIGQGIEFDYCCVHAS---LALREDGYETIMVNCNPETVSTDYDTS- 613 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L V + +I GQ L Sbjct: 614 ------DRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLK-----------------L 650 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L A +P +G+ A D++ + + L T+T E Sbjct: 651 ARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAV----EKAK 706 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEF--DHKVIVEQGI-KGREIECAV 233 ++G PL V+P+ + V E A D V+++ + E++ Sbjct: 707 EIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDA 766 Query: 234 LGNDN-PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + + E + + ++ D A + ++ EI D +R + Sbjct: 767 ICDGEMVLIGGIMEHIEQAGVHS-------GDSACSLPAYTLSQEIQDVMRQQVQKLAFE 819 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 L G+ V + NEV + E+N T P + +A+G+ + R++ A + Sbjct: 820 LQVRGLMNVQFAV-KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAARVM--AGK 872 Query: 353 RHAADNALK 361 A K Sbjct: 873 SLAEQGVTK 881 Score = 158 bits (399), Expect = 9e-38 Identities = 42/357 (11%), Positives = 109/357 (29%), Gaps = 52/357 (14%) Query: 4 LRVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYL 58 + I+ G++ E + S A+ + + V+ + + + ++ Sbjct: 8 KSILILGAGPIVIGQACEFDYS---GAQACKALREEGYRVINVNSNPATIMTDPEMADAT 64 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL-- 116 + D + P + G + +L Sbjct: 65 YIE----------------------PIHWEVVRKIIEKERPDAVLPTMGGQTALNCALEL 102 Query: 117 --QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 QG+L + +G+ A D+ ++ GL A V Sbjct: 103 ERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEA----LAV 158 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKG-REIEC 231 + +G P ++P+ G + E++ + ++++++ + G +E E Sbjct: 159 AADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEM 218 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 V+ + N I + + + D V + + +R ++ + Sbjct: 219 EVVRDKNDNCIIVCSI----ENFDAMGIHT-GDSITVAPAQTLTDKEYQIMRNASMAVLR 273 Query: 292 TLGC-AGMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 +G G + V + +++ E+N ++ +A+G + +L Sbjct: 274 EIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSA----LASKATGFPIAKVAAKL 326 >ref|NP_414574.1| (NC_000913) carbamoyl-phosphate synthase large subunit [Escherichia coli K12] sp|P00968|CARB_ECOLI CARBAMOYL-PHOSPHATE SYNTHASE LARGE CHAIN (CARBAMOYL-PHOSPHATE SYNTHETASE AMMONIA CHAIN) pir||SYECCP carbamoyl-phosphate synthase (glutamine-hydrolyzing) (EC 6.3.5.5) large chain [validated] - Escherichia coli pdb|1BXR|A Chain A, Structure Of Carbamoyl Phosphate Synthetase Complexed With The Atp Analog Amppnp pdb|1BXR|C Chain C, Structure Of Carbamoyl Phosphate Synthetase Complexed With The Atp Analog Amppnp pdb|1BXR|E Chain E, Structure Of Carbamoyl Phosphate Synthetase Complexed With The Atp Analog Amppnp pdb|1BXR|G Chain G, Structure Of Carbamoyl Phosphate Synthetase Complexed With The Atp Analog Amppnp pdb|1JDB|K Chain K, Carbamoyl Phosphate Synthetase From Escherichia Coli pdb|1CS0|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase Complexed At Cys269 In The Small Subunit With The Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde pdb|1CS0|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase Complexed At Cys269 In The Small Subunit With The Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde pdb|1CS0|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase Complexed At Cys269 In The Small Subunit With The Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde pdb|1CS0|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase Complexed At Cys269 In The Small Subunit With The Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde pdb|1C30|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269s pdb|1C30|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269s pdb|1C30|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269s pdb|1C30|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269s pdb|1C3O|A Chain A, Crystal Structure Of The Carbamoyl Phosphate Synthetase: Small Subunit Mutant C269s With Bound Glutamine pdb|1C3O|C Chain C, Crystal Structure Of The Carbamoyl Phosphate Synthetase: Small Subunit Mutant C269s With Bound Glutamine pdb|1C3O|E Chain E, Crystal Structure Of The Carbamoyl Phosphate Synthetase: Small Subunit Mutant C269s With Bound Glutamine pdb|1C3O|G Chain G, Crystal Structure Of The Carbamoyl Phosphate Synthetase: Small Subunit Mutant C269s With Bound Glutamine pdb|1JDB|B Chain B, Carbamoyl Phosphate Synthetase From Escherichia Coli pdb|1JDB|E Chain E, Carbamoyl Phosphate Synthetase From Escherichia Coli pdb|1JDB|H Chain H, Carbamoyl Phosphate Synthetase From Escherichia Coli emb|CAA24744.1| (V01500) carB reading frame [Escherichia coli] gb|AAA23539.1| (J01597) carbamoyl-phosphate synthetase subunit B [Escherichia coli] dbj|BAA01311.1| (D10483) carbamoyl-phosphate synthase large chain [Escherichia coli] gb|AAC73144.1| (AE000113) carbamoyl-phosphate synthase large subunit [Escherichia coli K12] Length = 1073 Score = 206 bits (524), Expect = 3e-52 Identities = 58/369 (15%), Positives = 120/369 (31%), Gaps = 54/369 (14%) Query: 2 EKLRVGIVFGGKSA-----EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 ++ ++ ++ GG + E + A A+ + ++ +++ + + D S Sbjct: 558 DREKIMVLGGGPNRIGQGIEFDYCCVHAS---LALREDGYETIMVNCNPETVSTDYDTS- 613 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L V + +I GQ L Sbjct: 614 ------DRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLK-----------------L 650 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L A +P +G+ A D++ + + L T+T E Sbjct: 651 ARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAV----EKAK 706 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEF--DHKVIVEQGI-KGREIECAV 233 ++G PL V+P+ + V E A D V+++ + E++ Sbjct: 707 EIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDA 766 Query: 234 LGNDN-PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + + E + + ++ D A + ++ EI D +R + Sbjct: 767 ICDGEMVLIGGIMEHIEQAGVHS-------GDSACSLPAYTLSQEIQDVMRQQVQKLAFE 819 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 L G+ V + NEV + E+N T P + +A+G+ + R++ A + Sbjct: 820 LQVRGLMNVQFAV-KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAARVM--AGK 872 Query: 353 RHAADNALK 361 A K Sbjct: 873 SLAEQGVTK 881 Score = 160 bits (404), Expect = 2e-38 Identities = 43/357 (12%), Positives = 110/357 (30%), Gaps = 52/357 (14%) Query: 4 LRVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYL 58 + I+ G++ E + S A+ + + V+L+ + + ++ Sbjct: 8 KSILILGAGPIVIGQACEFDYS---GAQACKALREEGYRVILVNSNPATIMTDPEMADAT 64 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL-- 116 + D + P + G + +L Sbjct: 65 YIE----------------------PIHWEVVRKIIEKERPDAVLPTMGGQTALNCALEL 102 Query: 117 --QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 QG+L + +G+ A D+ ++ GL A V Sbjct: 103 ERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEA----LAV 158 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKG-REIEC 231 + +G P ++P+ G + E++ + ++++++ + G +E E Sbjct: 159 AADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEM 218 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 V+ + N I + + + D V + + +R ++ + Sbjct: 219 EVVRDKNDNCIIVCSI----ENFDAMGIHT-GDSITVAPAQTLTDKEYQIMRNASMAVLR 273 Query: 292 TLGC-AGMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 +G G + V + +++ E+N ++ +A+G + +L Sbjct: 274 EIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSA----LASKATGFPIAKVAAKL 326 >ref|NP_266825.1| (NC_002662) pyruvate carboxylase (6.4.1.1) [Lactococcus lactis subsp. lactis] gb|AAK04767.1|AE006300_2 (AE006300) pyruvate carboxylase (6.4.1.1) [Lactococcus lactis subsp. lactis] Length = 1137 Score = 206 bits (524), Expect = 3e-52 Identities = 54/337 (16%), Positives = 109/337 (32%), Gaps = 26/337 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ--VPGKHEHQ 86 + +R ++ + + +S + Y + H + + Q P Sbjct: 3 KLLVANRGEIAVRVFRACNELGLSTVAVYAREDEYSVHRFKADESYLIGQGKKPIDAYLD 62 Query: 87 LIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKR 146 + D D I P +G L E+ +R A L FVG ++ DK K Sbjct: 63 IDDIIRVALESGADAIHPG-YGLLSENLEFATKVRAAGLVFVGPELHHLDIFGDKIKAKA 121 Query: 147 LLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAI 206 +A + I T E G P+ +K A G G+ +++ + Sbjct: 122 AADEAKVP---GIPGTNGAVDIDGALEFAKTYGYPVMIKAALGGGGRGMRVASNDAEMHD 178 Query: 207 AVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTK 259 A ++ VE+ I+ + IE +LG+ + E + K Sbjct: 179 GYARAKSEAIGAFGSGEIYVEKYIENPKHIEVQILGDSHGNIIHLHER--DCSVQRRNQK 236 Query: 260 YIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTL 319 I+ + ++ + ++I AV+ + +G V+ + +++ E+N Sbjct: 237 VIE-----IAPAVGLSLDFRNEICEAAVKLCKNVGYVNAGTVEFLV-KDDKFYFIEVNPR 290 Query: 320 PGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 + +G+ LI + H Sbjct: 291 VQVEHT----ITELITGVDIVQ-AQILIAQGKDLHRE 322 >sp|P11029|COAC_CHICK ACETYL-COA CARBOXYLASE (ACC) [INCLUDES: BIOTIN CARBOXYLASE ] pir||A29924 acetyl-CoA carboxylase (EC 6.4.1.2), hepatic - chicken gb|AAA48701.1| (J03541) acetyl-CoA carboxylase [Gallus gallus] Length = 2324 Score = 206 bits (524), Expect = 3e-52 Identities = 50/382 (13%), Positives = 119/382 (31%), Gaps = 49/382 (12%) Query: 10 FGGKSAEHEVSLQS----AKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 FGG +V + + A + +I + ++ + ++ ++ V L + Sbjct: 112 FGGNRVIEKVLIANNGIAAVKCMRSIRRWSYE--MFRNERAIRFVVMVTPEDLKANAE-- 167 Query: 66 HIALRPSATSLAQVPGKHEH-QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 +I + + P + + + + V ++ G E+ L +L Sbjct: 168 YIKMADHYVPVPGGPNNNNYANVELILDIAKRIPVQAVWAG-WGHASENPKLPELLHKNG 226 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPF-ITLTRANRHNISFAE---------- 173 + F+G A A DK + + + AG+ P+ + R + + Sbjct: 227 IAFMGPPSQAMWALGDKIASSIVAQTAGIPTLPWNGSGLRVDWQENDLQKRILNVPQELY 286 Query: 174 -------------VESKLGLPLFVKPANQGSSVGVSKVTSEEQYA---IAVDLAFEFDHK 217 ++G P+ +K + G G+ KV + + + V Sbjct: 287 EKGYVKDADDGLRAAEEVGYPVMIKASEGGGGKGIRKVNNADDFPNLFRQVQAEVPGSPI 346 Query: 218 VIVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPE 277 ++ + R +E +L + A + K I+E A + Sbjct: 347 FVMRLAKQSRHLEVQILADQYGNAISLFGR--DCSVQRRHQKIIEEAPASIATSV----- 399 Query: 278 INDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGL 337 + + + AV+ + +G V+ + + E+N + P + + Sbjct: 400 VFEHMEQCAVKLAKMVGYVSAGTVEYLYSQDGSFYFLELNPRLQVEH----PCTEMVADV 455 Query: 338 GYTDLITRLIELALERHAADNA 359 I + + H + Sbjct: 456 NLPA-AQLQIAMGIPLHRIKDI 476 >ref|NP_285727.1| (NC_002655) carbamoyl-phosphate synthase large subunit [Escherichia coli O157:H7 EDL933] ref|NP_308063.1| (NC_002695) carbamoyl-phosphate synthase large subunit [Escherichia coli O157:H7] gb|AAG54335.1|AE005180_2 (AE005180) carbamoyl-phosphate synthase large subunit [Escherichia coli O157:H7 EDL933] dbj|BAB33459.1| (AP002550) carbamoyl-phosphate synthase large subunit [Escherichia coli O157:H7] Length = 1073 Score = 206 bits (524), Expect = 3e-52 Identities = 58/369 (15%), Positives = 120/369 (31%), Gaps = 54/369 (14%) Query: 2 EKLRVGIVFGGKSA-----EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 ++ ++ ++ GG + E + A A+ + ++ +++ + + D S Sbjct: 558 DREKIMVLGGGPNRIGQGIEFDYCCVHAS---LALREDGYETIMVNCNPETVSTDYDTS- 613 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L V + +I GQ L Sbjct: 614 ------DRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLK-----------------L 650 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L A +P +G+ A D++ + + L T+T E Sbjct: 651 ARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAV----EKAK 706 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEF--DHKVIVEQGI-KGREIECAV 233 ++G PL V+P+ + V E A D V+++ + E++ Sbjct: 707 EIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDA 766 Query: 234 LGNDN-PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + + E + + ++ D A + ++ EI D +R + Sbjct: 767 ICDGEMVLIGGIMEHIEQAGVHS-------GDSACSLPAYTLSQEIQDVMRQQVQKLAFE 819 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 L G+ V + NEV + E+N T P + +A+G+ + R++ A + Sbjct: 820 LQVRGLMNVQFAV-KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAARVM--AGK 872 Query: 353 RHAADNALK 361 A K Sbjct: 873 SLAEQGVTK 881 Score = 160 bits (404), Expect = 3e-38 Identities = 43/357 (12%), Positives = 110/357 (30%), Gaps = 52/357 (14%) Query: 4 LRVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYL 58 + I+ G++ E + S A+ + + V+L+ + + ++ Sbjct: 8 KSILILGAGPIVIGQACEFDYS---GAQACKALREEGYRVILVNSNPATIMTDPEMADAT 64 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL-- 116 + D + P + G + +L Sbjct: 65 YIE----------------------PIHWEVVRKIIEKERPDAVLPTMGGQTALNCALEL 102 Query: 117 --QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 QG+L + +G+ A D+ ++ GL A V Sbjct: 103 ERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEA----LAV 158 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKG-REIEC 231 + +G P ++P+ G + E++ + ++++++ + G +E E Sbjct: 159 AADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEM 218 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 V+ + N I + + + D V + + +R ++ + Sbjct: 219 EVVRDKNDNCIIVCSI----ENFDAMGIHT-GDSITVAPAQTLTDKEYQIMRNASMAVLR 273 Query: 292 TLGC-AGMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 +G G + V + +++ E+N ++ +A+G + +L Sbjct: 274 EIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSA----LASKATGFPIAKVAAKL 326 >ref|NP_372130.1| (NC_002758) acetyl-CoA carboxylase [Staphylococcus aureus subsp. aureus Mu50] ref|NP_374719.1| (NC_002745) acetyl-CoA carboxylase (biotin carboxylase subunit), accC homolog [Staphylococcus aureus subsp. aureus N315] dbj|BAB42698.1| (AP003134) ORFID:SA1434~acetyl-CoA carboxylase (biotin carboxylase subunit), accC homolog [Staphylococcus aureus subsp. aureus N315] dbj|BAB57768.1| (AP003362) acetyl-CoA carboxylase [Staphylococcus aureus subsp. aureus Mu50] Length = 453 Score = 206 bits (524), Expect = 3e-52 Identities = 53/326 (16%), Positives = 106/326 (32%), Gaps = 19/326 (5%) Query: 28 VDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHEHQ 86 + + +R ++ + I ++ + + Y + H+ L A + + Sbjct: 2 LRCLIANRGEIAVRIIRACREYGIETVAVYAKGDEQSLHVHLADQAICIGEANALDSYLN 61 Query: 87 LIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKR 146 + + + + I P +G L E + + F+G DK ++ Sbjct: 62 IDRIISAAQITGANAIHPG-YGFLSESTKFAQTVEEQGIAFIGPTKKTMEMMGDKITARQ 120 Query: 147 LLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAI 206 + AG+ + P A H + +G P+ +K A+ G G+ V E Sbjct: 121 TVHHAGVPVIPGS--NGAVNHVSEIENLAKDIGYPVVIKAASGGGGKGIRIVKKAEDLEK 178 Query: 207 AVDLAFEF------DHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTK 259 A A D +V VE I + +E V+G+ GE + K Sbjct: 179 AFKEAKSEGKKYFDDDRVYVEAFIPVAKHVEVQVMGDGQDNYVHLGER--DCSVQRKNQK 236 Query: 260 YIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTL 319 I+E AA+ E +I AV+ + ++ +T + E+N Sbjct: 237 LIEES-----PCAALTEERRQQICNDAVKVARAANYRSAGTIEFLVT-DTAHYFIEMNAR 290 Query: 320 PGFTNISMYPKLWQASGLGYTDLITR 345 + + + L+ Sbjct: 291 IQVEHTVTEMRAERDLVAAQLYLLEH 316 >pir||T09538 acetyl-CoA carboxylase (EC 6.4.1.2) - alfalfa gb|AAB42144.1| (L25042) acetyl-CoA carboxylase [Medicago sativa] Length = 2257 Score = 205 bits (523), Expect = 4e-52 Identities = 54/361 (14%), Positives = 108/361 (28%), Gaps = 40/361 (11%) Query: 10 FGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIAL 69 GG H S+ A N + A+ R V + G D + Sbjct: 33 LGGNKPIH--SILIANNGMAAVKFIR-SVRSWAYETFGTEKAILLVAMATPEDMRINAEH 89 Query: 70 RPSATSLAQVPG----KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 A +VPG + + + VD ++P G E+ L L+ + Sbjct: 90 IRIADQFVEVPGGTNNNNYANVQLILEIAEITHVDAVWPG-WGHASENPELPDALKAKGI 148 Query: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL------- 178 F+G ++ AA DK + + + A + P+ + ++ Sbjct: 149 VFLGPPAISMAALGDKIGSSLIAQAAEVPTLPWSGSHVKIPPESDLITIPDEIYRAACVY 208 Query: 179 ------------GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDL---AFEFDHKVIVEQG 223 G P +K + G G+ KV ++++ I++ Sbjct: 209 TTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVA 268 Query: 224 IKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIR 283 + R +E ++ + + + K I+E V P E ++ Sbjct: 269 SQSRHLEVQLICDQHGNFAALHSR--DCSVQRRHQKIIEEGPITVAPP-----ETVKELE 321 Query: 284 AIAVQAYQTLGCAGMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDL 342 A + +++ G A V+ + E E+N + + L + Sbjct: 322 QAARRLAKSVNYVGAATVEYLYSMETGEYYFLELNPRLQVEH--PVTEWIAEINLPAAQV 379 Query: 343 I 343 Sbjct: 380 A 380 >sp|Q28559|COA1_SHEEP ACETYL-COA CARBOXYLASE 1 (ACC-ALPHA) [INCLUDES: BIOTIN CARBOXYLASE ] emb|CAA56352.1| (X80045) acetyl-CoA carboxylase [Ovis aries] Length = 2346 Score = 205 bits (523), Expect = 4e-52 Identities = 47/364 (12%), Positives = 112/364 (29%), Gaps = 45/364 (12%) Query: 24 AKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKH 83 A + +I + ++ + ++ ++ V L + +I + + P + Sbjct: 130 AVKCMRSIRRWSYE--MFRNERAIRFVVMVTPEDLKANAE--YIKMADHYVPVPGGPNNN 185 Query: 84 EH-QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKD 142 + + + V ++ G E+ L +L + F+G A A DK Sbjct: 186 NYANVELILDIARRIPVQAVWAG-WGHASENPKLPELLLKNGIAFMGPPSQAMWALGDKI 244 Query: 143 VTKRLLRDAGLNIAPFI----------------TLTRANR--------HNISFAEVESKL 178 + + + AG+ P+ L + ++ Sbjct: 245 ASSIVAQTAGIPTLPWSGSGLCVDWHENDFSKRILNVPQELYEKGYVKDVDDGLKAAEEV 304 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYA---IAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 G P+ +K + G G+ KV + + + V ++ + R +E +L Sbjct: 305 GYPVMIKASEGGGGKGIRKVNNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILA 364 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 + A + K I+E A + PA + + + AV+ + +G Sbjct: 365 DQYGNAISLFGR--DCSVQRRHQKIIEEAPAAIATPA-----VFEHMEQCAVKLARMVGY 417 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 V+ + + E+N + P + + I + + + Sbjct: 418 VSAGTVEYLYSQDGSFYFLELNPRLQVEH----PCTEMVADVNLPA-AQLQIAMGIPLYR 472 Query: 356 ADNA 359 + Sbjct: 473 IKDI 476 >gb|AAB40890.1| (U35023) acyl coenzyme A carboxylase [Corynebacterium glutamicum] Length = 591 Score = 205 bits (523), Expect = 4e-52 Identities = 51/337 (15%), Positives = 108/337 (31%), Gaps = 23/337 (6%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHE 84 + I + +R ++ + + + Y D ++ A +L Sbjct: 6 RKITKVLVANRGEIAIRVFRAARDEGIGSVAVYAEPDADAPFVSYADEAFALGGQTSAES 65 Query: 85 HQLID-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + +ID + D I P +G L E+ + L ++G + + DK Sbjct: 66 YLVIDKIIDAARKSGADAIHPG-YGFLAENADFAEAVINEGLIWIGPSPESIRSLGDKVT 124 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 + + A +AP + + GLP+ +K A G G+ E+ Sbjct: 125 ARHIADTAKAPMAPGTKEPVKDAAE--VVAFAEEFGLPIAIKAAFGGGGRGMKVAYKMEE 182 Query: 204 YAIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 A + A + VE+ + R +E V+ + + G Sbjct: 183 VADLFESATREATAAFGRGECFVERYLDKARHVEAQVIADKHGNVVVAGTR--DCSLQRR 240 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEI 316 K ++E + + +++ + A + G G V+ + + + E+ Sbjct: 241 FQKLVEE-----APAPFLTDDQRERLHSSAKAICKEAGYYGAGTVEYLVGSDGLISFLEV 295 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 NT + P + +G+ + R I E Sbjct: 296 NTRLQVEH----PVTEETTGIDLVREMFR-IAEGHEL 327 >pir||S41121 acetyl-CoA carboxylase (EC 6.4.1.2) - human emb|CAA48770.1| (X68968) acetyl-CoA carboxylase [Homo sapiens] prf||2006242A Ac-CoA carboxylase [Homo sapiens] Length = 2339 Score = 205 bits (522), Expect = 6e-52 Identities = 48/364 (13%), Positives = 116/364 (31%), Gaps = 45/364 (12%) Query: 24 AKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKH 83 A + +I + ++ + ++ ++ V L + +I + + P + Sbjct: 130 AVKCMRSIRRWSYE--MFRNERAIRFVVMVTPEDLKANAE--YIKMADHYVPVPGGPNNN 185 Query: 84 EH-QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKD 142 + + + V ++ G E+ L +L + F+G A A DK Sbjct: 186 NYANVELILDIAKRIPVQAVWAG-WGHASENPKLPELLLKNGIAFMGPPSQAMWALGDKI 244 Query: 143 VTKRLLRDAGLNIAPFI-TLTRANRHNISFAE-----------------------VESKL 178 + + + AG+ P+ + R + F++ ++ Sbjct: 245 ASSIVAQTAGIPTLPWSGSGLRVDWQENDFSKRILNVPQELYEKGYVKDVDDGLQAAEEV 304 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYA---IAVDLAFEFDHKVIVEQGIKGREIECAVLG 235 G P+ +K + G G+ KV + + + V ++ + R +E +L Sbjct: 305 GYPVMIKASEGGGGKGIRKVNNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILA 364 Query: 236 NDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 + A + K I+E A + PA + + + AV+ + +G Sbjct: 365 DQYGNAISLFGR--DCSVQRRHQKIIEEAPATIATPA-----VFEHMEQCAVKLAKMVGY 417 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 V+ + + E+N + P + + I + + + Sbjct: 418 VSAGTVEYLYSQDRSFYFLELNPRLQVEH----PCTEMVADVNLPA-AQLQIAMGIPLYR 472 Query: 356 ADNA 359 + Sbjct: 473 IKDI 476 >pir||T02235 acetyl-CoA carboxylase (EC 6.4.1.2) - maize gb|AAA80214.1| (U19183) acetyl-coenzyme A carboxylase [Zea mays] Length = 2325 Score = 205 bits (521), Expect = 7e-52 Identities = 53/361 (14%), Positives = 100/361 (27%), Gaps = 40/361 (11%) Query: 10 FGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIAL 69 GGK+ H S+ A N + A R V D G D + Sbjct: 126 LGGKTPIH--SILVANNGMAAAKFMR-SVRTWANDTFGSEKAIQLIAMATPEDMRINAEH 182 Query: 70 RPSATSLAQVPG----KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 A +VPG + + V ++P G E+ L L + Sbjct: 183 IRIADQFVEVPGGTNNNNYANVQLIVGMAQKLGVSAVWPG-WGHASENPELPDALTAKGI 241 Query: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK-------- 177 F+G + A DK + + + AG+ + + + Sbjct: 242 VFLGPPASSMNALGDKVGSALIAQAAGVPTLAWSGSHVEVPLECCLDAIPEEMYRKACVT 301 Query: 178 -----------LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDL---AFEFDHKVIVEQG 223 +G P +K + G G+ KV ++++ ++ Sbjct: 302 TTEEAVASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFVMRLA 361 Query: 224 IKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIR 283 + R +E +L + + K I+E V E + Sbjct: 362 SQSRHLEVQLLCDQYGNVAALHSR--DCSVQRRHQKIIEEGPVTVAPR-----ETVKALE 414 Query: 284 AIAVQAYQTLGCAGMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDL 342 A + + +G G A V+ + + E+N + + L + Sbjct: 415 QAARRLAKAVGYVGAATVEYLYSMETGDYYFLELNPRLQVEH--PVTEWIAEVNLPAAQV 472 Query: 343 I 343 Sbjct: 473 A 473 >prf||2009329A urea amidolyase [Pichia jadinii] Length = 1830 Score = 205 bits (521), Expect = 7e-52 Identities = 54/353 (15%), Positives = 110/353 (30%), Gaps = 37/353 (10%) Query: 30 AIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ-VPGKHEHQLI 88 + +R ++ + + + + + Y H+ A L + + Sbjct: 623 VLVANRGEIAVRIMRTLKKLGIQSIAIYSEPDQYSQHVLDADVAIPLNGTSAAETYINIE 682 Query: 89 DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLL 148 + I P +G L E+ + + FVG + K + + Sbjct: 683 KVIKAAKDSKAEAIIPG-YGFLSENAEFADICEKEGIVFVGPTGDSIRKLGLKHSAREIA 741 Query: 149 RDAGLNIAPFITLTRANRHNISFAEVESKLGL--------PLFVKPANQGSSVGVSKVTS 200 + A + + P L SKLGL + +K G +G+ KV Sbjct: 742 QKANVPLVPGSGLIS---DIDEAIAFASKLGLSNDPETSVKVMLKSTAGGGGIGLQKVDL 798 Query: 201 EEQYAIAVD------LAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDF 253 + A + A+ D V +E+ + R +E + G+ A GE Sbjct: 799 LDDLPKAFETVKHQGQAYFGDAGVFLERFVEDARHVEVQMFGDGFGNAIAVGER--DCSL 856 Query: 254 YAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE-NEVV 312 + K I+E + +R A Q ++ V+ + +E Sbjct: 857 QRRNQKIIEE-----TPAPNLPESTRQAMRKAAEQLGGSMNYKCAGTVEFIYEEKRDEFF 911 Query: 313 INEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH--AADNALKTT 363 E+N + P +GL L+ ++++A + ++ T Sbjct: 912 FLEVNARLQVEH----PITESVTGLD---LVEWMLKIAANQAPDFKSQTIEVT 957 >pir||T06162 acetyl-CoA carboxylase (EC 6.4.1.2) - wheat (fragment) gb|AAC39332.1| (AF029897) acetyl-coenzyme A carboxylase [Triticum aestivum] Length = 619 Score = 205 bits (521), Expect = 7e-52 Identities = 55/365 (15%), Positives = 104/365 (28%), Gaps = 40/365 (10%) Query: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 + GGK+ H S+ A N + A R V + G D Sbjct: 122 FCMALGGKTPIH--SVLVANNGMAAAKFMR-SVRTWANETFGSEKAIQLIAMATPEDMRI 178 Query: 66 HIALRPSATSLAQVPG----KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 + A +VPG + + V ++P G E+ L L Sbjct: 179 NAEHIRIADQFVEVPGGTNNNNYANVQLIVEIAVRTGVSAVWPG-WGHASENPELPDALN 237 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK---- 177 + F+G + A DK + + + AG+ P+ + + ++ Sbjct: 238 ANGIVFLGPPSSSMNALGDKVGSALIAQAAGVPTLPWSGSQVEIPLEVCLDSIPAEMYRK 297 Query: 178 ---------------LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDL---AFEFDHKVI 219 +G P +K + G G+ KV +++ I Sbjct: 298 ACVSTTEEALASCQMIGYPAMIKASWGGGGKGIRKVNNDDDVRALFKQVQGEVPGSPIFI 357 Query: 220 VEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEIN 279 + + R +E +L + + K I+E V E Sbjct: 358 MRLASQSRHLEVQLLCDQYGNVAALHSR--DCSVQRRHQKIIEEGPVTVAPR-----ETV 410 Query: 280 DKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLG 338 ++ A + + +G G A V+ + E E+N + + L Sbjct: 411 KELEQAARRLAKAVGYVGAATVEYLYSMETGEYYFLELNPRLQVEH--PVTEWIAEVNLP 468 Query: 339 YTDLI 343 + Sbjct: 469 AAQVA 473 >gb|AAG40564.1|AF062308_2 (AF062308) acetyl-CoA carboxylase 2 [Arabidopsis thaliana] Length = 2375 Score = 205 bits (521), Expect = 8e-52 Identities = 56/361 (15%), Positives = 106/361 (28%), Gaps = 40/361 (11%) Query: 10 FGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIAL 69 GGK H S+ A N + A+ R V + G D + Sbjct: 153 LGGKRPIH--SILVATNGMAAVKFIR-SVRTWAYETFGSEKAVKLVAMATPEDMRINAEH 209 Query: 70 RPSATSLAQVPG----KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 A +VPG + + + VD ++P G E+ L L+ + Sbjct: 210 IRIADQFVEVPGGTNNNNYANVQLIVEMAEVTRVDAVWPG-WGHASENPELPDALKEKGI 268 Query: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPF-----------ITLTRANR-------- 166 F+G + A DK + + + A + P+ +T Sbjct: 269 IFLGPPADSMIALGDKIGSSLIAQAADVPTLPWSGSHVKIPPGRSLVTVPEEIYKKACVY 328 Query: 167 HNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDL---AFEFDHKVIVEQG 223 +G P +K + G G+ KV ++++ I++ Sbjct: 329 TTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVA 388 Query: 224 IKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIR 283 + R +E +L + + K I+E V E K+ Sbjct: 389 SQSRHLEAQLLCDQYGNVAALHSR--DCSVQRRHQKIIEEGPITVA-----PQETIKKLE 441 Query: 284 AIAVQAYQTLGCAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDL 342 A + +++ G A V+ + + E E+N + + L + Sbjct: 442 QAARRLAKSVNYVGAATVEYLYSMDTGEYYFLELNPRLQVEH--PVTEWIAEVNLPAAQV 499 Query: 343 I 343 Sbjct: 500 A 500 Searching..................................................done Results from round 5 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: ref|NP_286119.1| (NC_002655) Z0477 gene product [Escherichia col... 307 1e-82 ref|NP_454975.1| (NC_003198) D-alanine:D-alanine ligase A [Salmo... 306 3e-82 gb|AAB17902.2| (U39790) D-alanine:D-alanine ligase [Enterococcus... 285 4e-76 gb|AAG49141.1|AF215736_1 (AF215736) D-alanine:D-alanine ligase [... 283 2e-75 sp|Q47827|DDL_ENTHR D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 282 3e-75 ref|NP_372607.1| (NC_002758) D-alanine-D-alanine ligase [Staphyl... 273 2e-72 ref|NP_388337.1| (NC_000964) D-alanyl-D-alanine ligase A [Bacill... 273 2e-72 gb|AAK67986.1|AF297332_1 (AF297332) 3-methylcrotonyl-CoA carboxy... 268 5e-71 ref|NP_064551.2| (NM_020166) methylcrotonoyl-Coenzyme A carboxyl... 268 5e-71 dbj|BAA99407.1| (AB029826) 3-methylcrotonyl-CoA carboxylase biot... 268 6e-71 ref|NP_266497.1| (NC_002662) D-alanine-D-alanine ligase (EC 6.3.... 268 9e-71 emb|CAB64487.1| (AJ243059) D-ala,D-ala ligase [Streptococcus pne... 267 1e-70 sp|O54631|DDL_STRPN D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 265 4e-70 ref|NP_346110.1| (NC_003028) D-alanine--D-alanine ligase [Strept... 265 4e-70 emb|CAB64463.1| (AJ243053) D-ala,D-ala ligase [Streptococcus pne... 265 5e-70 emb|CAB64459.1| (AJ243052) D-ala,D-ala ligase [Streptococcus pne... 265 5e-70 emb|CAB64475.1| (AJ243056) D-ala,D-ala ligase [Streptococcus pne... 265 6e-70 ref|NP_359108.1| (NC_003098) D-alanine-D-alanine ligase [Strepto... 264 7e-70 emb|CAB64471.1| (AJ243055) D-ala,D-ala ligase [Streptococcus pne... 264 7e-70 ref|NP_464381.1| (NC_003210) D-alanine--D-alanine ligase [Lister... 262 3e-69 sp|P25051|VANA_ENTFC VANCOMYCIN/TEICOPLANIN A-TYPE RESISTANCE PR... 262 4e-69 emb|CAB61227.1| (Y15704) vana protein [Bacillus circulans] 261 6e-69 ref|NP_269512.1| (NC_002737) putative D-ala,D-ala ligase [Strept... 261 6e-69 emb|CAB63849.1| (AJ243051) D-ala,D-ala ligase [Streptococcus pne... 261 8e-69 pdb|1E4E|A Chain A, D-Alanyl-D-Lacate Ligase 260 1e-68 gb|AAF36803.1|AF155139_2 (AF155139) putative D-alanyl-D-alanine ... 259 3e-68 ref|NP_470190.1| (NC_003212) D-alanine--D-alanine ligase [Lister... 259 3e-68 emb|CAB64483.1| (AJ243058) D-ala,D-ala ligase [Streptococcus pne... 259 4e-68 pdb|1E4E|B Chain B, D-Alanyl-D-Lacate Ligase 258 5e-68 gb|AAG37026.1|AF277571_3 (AF277571) D-alanine:D-lactate ligase [... 258 5e-68 gb|AAF71281.1|AF253562_5 (AF253562) ligase [Enterococcus faecalis] 258 7e-68 ref|NP_539980.1| (NC_003317) BIOTIN CARBOXYLASE [Brucella melite... 257 1e-67 ref|NP_485023.1| (NC_003272) D-alanyl-D-alanine ligase [Nostoc s... 256 2e-67 pir||T35363 D-alanine--D-alanine ligase (EC 6.3.2.4) A SC66T3.06... 256 2e-67 sp|Q06893|VANB_ENTFC VANCOMYCIN B-TYPE RESISTANCE PROTEIN VANB (... 256 3e-67 ref|NP_442228.1| (NC_000911) biotin carboxylase [Synechocystis s... 256 3e-67 ref|NP_389369.1| (NC_000964) pyruvate carboxylase [Bacillus subt... 256 3e-67 ref|NP_076133.1| (NM_023644) methylcrotonoyl-Coenzyme A carboxyl... 256 4e-67 dbj|BAB25253.1| (AK007782) putative [Mus musculus] 255 4e-67 gb|AAB88214.1| (U59234) biotin carboxylase [Synechococcus sp. PC... 254 9e-67 gb|AAF72363.1|AF192329_24 (AF192329) VanB [Enterococcus faecalis] 253 2e-66 gb|AAC23582.1| (U82965) D-alanine:D-alanine ligase-related prote... 253 2e-66 gb|AAD42184.1|AF130997_5 (AF130997) D-alanine:D-lactate ligase [... 252 3e-66 ref|NP_484982.1| (NC_003272) biotin carboxylase [Nostoc sp. PCC ... 251 6e-66 ref|NP_103309.1| (NC_002678) D-alanine-D-alanine ligase A [Mesor... 251 7e-66 ref|NP_294085.1| (NC_001263) D-alanine--D-alanine ligase [Deinoc... 251 7e-66 sp|Q47758|DDL_ENTFA D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 251 8e-66 sp|P29753|VANC_ENTGA VANCOMYCIN C-TYPE RESISTANCE PROTEIN VANC (... 251 1e-65 gb|AAD41882.1|AF153050_3 (AF153050) D-alanine:D-lactate ligase [... 250 1e-65 emb|CAB05883.1| (Z83305) D-alanine:D-alanine ligase-related prot... 249 2e-65 ref|NP_243491.1| (NC_002570) pyruvate carboxylase [Bacillus halo... 249 3e-65 gb|AAG34685.1|AF310955_1 (AF310955) ligase VanB2 [Enterococcus f... 249 3e-65 gb|AAC43218.1| (U00457) D-alanine:D-alanine ligase-related prote... 249 3e-65 ref|NP_349497.1| (NC_003030) D-alanine-D-alanine ligase [Clostri... 249 4e-65 ref|NP_102052.1| (NC_002678) biotin carboxylase [Mesorhizobium l... 247 1e-64 gb|AAG34684.1|AF310954_1 (AF310954) ligase VanB2 [Enterococcus f... 246 2e-64 gb|AAG34683.1|AF310953_1 (AF310953) ligase VanB2 [Enterococcus f... 246 3e-64 gb|AAD51060.1|AF175293_5 (AF175293) D-alanine:D-lactate ligase [... 246 4e-64 dbj|BAA12072.1| (D83706) pyruvate carboxylase [Geobacillus stear... 244 7e-64 pir||T02431 acetyl-CoA carboxylase (EC 6.4.1.2), biotin carboxyl... 244 8e-64 ref|NP_371638.1| (NC_002758) pyruvate carboxylase [Staphylococcu... 244 1e-63 gb|AAK25989.1|AF360279_1 (AF360279) putative biotin carboxylase ... 244 1e-63 ref|NP_198386.1| (NC_003076) acetyl-CoA carboxylase [Arabidopsis... 244 1e-63 ref|NP_354336.1| (NC_003062) AGR_C_2451p [Agrobacterium tumefaci... 243 2e-63 gb|AAF80469.1|AF163150_1 (AF163150) acetyl-CoA carboxylase [Glyc... 242 3e-63 ref|NP_214014.1| (NC_000918) biotin carboxylase [Aquifex aeolicu... 242 3e-63 gb|AAD19835.1| (AF060799) D-alanyl-D-alanine ligase [Amycolatops... 242 3e-63 ref|NP_302152.1| (NC_002677) D-alanine-D-alanine ligase A [Mycob... 242 3e-63 pir||T07093 acetyl-CoA carboxylase (EC 6.4.1.2) biotin carboxyla... 242 3e-63 emb|CAB09721.1| (Z97025) pyruvate carboxylase [Bacillus subtilis] 242 4e-63 sp|Q9ZGN0|DDL_MYCSM D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 242 4e-63 pir||T06279 acetyl-CoA carboxylase (EC 6.4.1.2), biotin carboxyl... 242 5e-63 sp|Q47823|DDL_ENTGA D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 241 7e-63 pir||T44813 biotin carboxylase (EC 6.3.4.14) yngH [imported] - B... 241 7e-63 ref|NP_385425.1| (NC_003047) PROBABLE BIOTIN CARBOXYLASE PROTEIN... 241 1e-62 ref|NP_217497.1| (NC_000962) ddlA [Mycobacterium tuberculosis H3... 241 1e-62 ref|NP_251581.1| (NC_002516) probable biotin carboxylase/biotin ... 240 2e-62 ref|NP_337574.1| (NC_002755) D-alanine--D-alanine ligase [Mycoba... 240 2e-62 ref|NP_219107.1| (NC_000919) D-alanine--D-alanine ligase (ddlA) ... 239 3e-62 gb|AAA60990.1| (L29638) ligase [Enterococcus casseliflavus] 239 4e-62 ref|NP_539717.1| (NC_003317) PROPIONYL-COA CARBOXYLASE ALPHA CHA... 238 6e-62 ref|NP_220281.1| (NC_000117) UDP-N-acetylmuramate-alanine ligase... 238 7e-62 ref|NP_283408.1| (NC_003116) putative acetyl-CoA carboxylase bio... 237 1e-61 ref|NP_171808.1| (NC_003070) putative 3-methylcrotonyl-CoA carbo... 237 1e-61 ref|NP_241998.1| (NC_002570) biotin carboxylase [Bacillus halodu... 237 1e-61 gb|AAK60339.1| (AY034410) biotin carboxylase [Brassica napus] 237 2e-61 ref|NP_274857.1| (NC_003112) acetyl-CoA carboxylase, biotin carb... 236 4e-61 sp|Q9ZBR9|DDL_STRCO D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 236 4e-61 gb|AAF57199.1| (AE003779) CG2118 gene product [Drosophila melano... 235 6e-61 ref|NP_277017.1| (NC_000916) biotin carboxylase [Methanothermoba... 235 6e-61 ref|NP_437988.1| (NC_003078) putative propionyl-CoA carboxylase ... 234 8e-61 ref|NP_534077.1| (NC_003305) propionyl-coenzyme A carboxylase, a... 233 2e-60 ref|NP_440997.1| (NC_000911) D-alanine:D-alanine ligase-related ... 233 2e-60 gb|AAG45427.1|AF317651_4 (AF317651) pyruvate carboxylase ATP-bin... 232 4e-60 ref|NP_357031.1| (NC_003063) AGR_L_580GMp [Agrobacterium tumefac... 232 5e-60 ref|NP_520908.1| (NC_003295) PROBABLE BIOTIN CARBOXYLASE PROTEIN... 231 6e-60 gb|AAH06915.1|AAH06915 (BC006915) Similar to Propionyl Coenzyme ... 231 7e-60 ref|NP_253535.1| (NC_002516) biotin carboxylase [Pseudomonas aer... 231 1e-59 gb|AAL02364.1| (AY046947) propionyl CoA-carboxylase alpha-subuni... 230 2e-59 ref|NP_296522.1| (NC_002620) UDP-N-acetylmuramate--alanine ligas... 230 2e-59 ref|NP_293843.1| (NC_001263) acetyl-CoA carboxylase, biotin carb... 229 2e-59 ref|NP_036876.1| (NM_012744) pyruvate carboxylase [Rattus norveg... 229 3e-59 pir||S68252 pyruvate carboxylase (EC 6.4.1.1) precursor - rat >g... 229 3e-59 ref|NP_539644.1| (NC_003317) D-ALANINE--D-ALANINE LIGASE A [Bruc... 229 3e-59 gb|AAL27442.1|AF430807_7 (AF430807) VanE [Enterococcus faecalis] 229 3e-59 pir||T06360 methylcrotonoyl-CoA carboxylase (EC 6.4.1.4) biotin ... 229 3e-59 pdb|1EHI|A Chain A, D-Alanine:d-Lactate Ligase (Lmddl2) Of Vanco... 229 4e-59 sp|Q9PLG1|MUDD_CHLMU MURC/DDL BIFUNCTIONAL ENZYME [INCLUDES: UDP... 229 4e-59 ref|NP_000273.1| (NM_000282) Propionyl-Coenzyme A carboxylase, a... 229 4e-59 gb|AAB31500.1| (S72370) pyruvate carboxylase; pyruvate:carbon di... 229 4e-59 ref|NP_000911.1| (NM_000920) pyruvate carboxylase precursor [Hom... 229 4e-59 sp|P11498|PYC_HUMAN Pyruvate carboxylase, mitochondrial precurso... 229 4e-59 ref|NP_032823.1| (NM_008797) pyruvate decarboxylase [Mus musculu... 229 4e-59 ref|NP_248224.1| (NC_000909) biotin carboxylase (accC) [Methanoc... 228 5e-59 ref|NP_102581.1| (NC_002678) propionyl-CoA carboxylase alpha cha... 228 6e-59 ref|NP_389706.1| (NC_000964) similar to biotin carboxylase [Baci... 228 6e-59 pir||A34337 propionyl-CoA carboxylase (EC 6.4.1.3) alpha chain p... 228 6e-59 ref|NP_009767.1| (NC_001134) Urea amidolyase (contains urea carb... 228 7e-59 ref|NP_372050.1| (NC_002758) acetyl-CoA carboxylase [Staphylococ... 227 8e-59 gb|AAB18338.1| (U75444) D-Ala-D-Ala ligase2 [Leuconostoc mesente... 227 8e-59 sp|Q48745|DDL_LEUME D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 227 9e-59 ref|NP_357130.1| (NC_003063) AGR_L_2704p [Agrobacterium tumefaci... 227 1e-58 ref|NP_104954.1| (NC_002678) pyruvate carboxylase [Mesorhizobium... 227 1e-58 ref|NP_355659.1| (NC_003062) AGR_C_4940p [Agrobacterium tumefaci... 225 4e-58 gb|AAF09095.1|AF068759_1 (AF068759) pyruvate carboxylase [Lactoc... 225 4e-58 ref|NP_300241.1| (NC_002491) biotin carboxylase [Chlamydophila p... 225 5e-58 gb|AAC41643.1| (M64926) urea amidolyase [Saccharomyces cerevisiae] 225 5e-58 pir||T43735 pyruvate carboxylase (EC 6.4.1.1) [validated] - yell... 225 5e-58 ref|NP_297342.1| (NC_002488) biotin carboxylase subunit of acety... 225 5e-58 gb|AAB92588.1| (AF038548) pyruvate carboxylase [Corynebacterium ... 225 5e-58 ref|NP_254123.1| (NC_002516) probable biotin carboxylase subunit... 225 5e-58 ref|NP_219627.1| (NC_000117) Biotin Carboxylase [Chlamydia trach... 225 6e-58 ref|NP_505977.1| (NM_073576) pyruvate carboxylase [Caenorhabditi... 225 6e-58 ref|NP_501777.1| (NM_069376) carbomoyl-phosphate carboxylase [Ca... 225 7e-58 gb|AAA88512.1| (M22631) alpha-propionyl-CoA carboxylase (EC 6.4.... 224 8e-58 ref|NP_350153.1| (NC_003030) Biotin carboxylase [Clostridium ace... 224 8e-58 emb|CAA70282.1| (Y09061) acetyl-CoA carboxylase, biotin carboxyl... 224 9e-58 ref|NP_224391.1| (NC_000922) Biotin Carboxylase [Chlamydophila p... 224 9e-58 ref|NP_387384.1| (NC_003047) PROBABLE PYRUVATE CARBOXYLASE PROTE... 224 1e-57 ref|NP_539184.1| (NC_003317) PYRUVATE CARBOXYLASE [Brucella meli... 224 1e-57 sp|P14882|PCCA_RAT PROPIONYL-COA CARBOXYLASE ALPHA CHAIN, MITOCH... 224 1e-57 dbj|BAB16297.1| (AB039884) acetyl-CoA carboxylase biotin carboxy... 224 1e-57 gb|AAG37836.1|AF295372_1 (AF295372) pyruvate carboxylase [Danio ... 223 2e-57 ref|NP_470397.1| (NC_003212) highly similar to pyruvate carboxyl... 223 2e-57 gb|AAD34740.1| (AF132152) unknown [Drosophila melanogaster] >gi|... 223 2e-57 gb|AAC44388.1| (U51439) pyruvate carboxylase [Rhizobium etli] 223 2e-57 gb|AAG22289.1| (AE003831) BcDNA:GH06348 gene product [alt 1] [Dr... 223 3e-57 ref|NP_464597.1| (NC_003210) highly similar to pyruvate carboxyl... 222 3e-57 gb|AAF32338.1|AF218939_6 (AF218939) acetyl-CoA carboxylase [Baci... 222 3e-57 ref|NP_296778.1| (NC_002620) acetyl-coenzyme A carboxylase, biot... 222 4e-57 ref|NP_349267.1| (NC_003030) Pyruvate carboxylase, PYKA [Clostri... 222 6e-57 gb|AAA34843.1| (J03889) pyruvate carboxylase (EC 6.4.1.1) [Sacch... 221 6e-57 ref|NP_011453.1| (NC_001139) converts pyruvate to oxaloacetate; ... 221 8e-57 ref|NP_243653.1| (NC_002570) acetyl-CoA carboxylase biotin carbo... 221 1e-56 ref|NP_533976.1| (NC_003305) 3-methylcrotonyl-CoA carboxylase al... 220 1e-56 ref|NP_107983.1| (NC_002678) 3-methylcrotonyl-CoA carboxylase bi... 220 2e-56 ref|NP_009777.1| (NC_001134) converts pyruvate to oxaloacetate; ... 220 2e-56 ref|NP_225100.1| (NC_000922) Muramate-Ala Ligase & D-Ala-D-Ala L... 220 2e-56 pir||T39734 pyruvate carboxylase (EC 6.4.1.1) [similarity] - fis... 219 3e-56 ref|NP_069058.1| (NC_000917) biotin carboxylase (acc) [Archaeogl... 219 3e-56 ref|NP_518386.1| (NC_003295) PROBABLE ACYL-COA CARBOXYLASE ALPHA... 219 4e-56 ref|NP_509293.1| (NM_076892) Propionyl-coA carboxylase alpha cha... 219 4e-56 dbj|BAA11239.1| (D78170) pyruvate carboxylase [Schizosaccharomyc... 218 6e-56 ref|NP_407114.1| (NC_003143) biotin carboxylase [Yersinia pestis... 218 8e-56 emb|CAA42544.1| (X59890) pyruvate carboxylase [Saccharomyces cer... 218 8e-56 ref|NP_282187.1| (NC_002163) putative pyruvate carboxylase A sub... 217 1e-55 pir||T06565 acetyl-CoA carboxylase (EC 6.4.1.2) biotin carboxyla... 217 1e-55 ref|NP_540842.1| (NC_003317) acetyl-CoA carboxylase alpha chain ... 217 1e-55 ref|NP_464882.1| (NC_003210) acetyl-CoA carboxylase subunit (bio... 217 1e-55 ref|NP_439133.1| (NC_000907) acetyl-CoA carboxylase, biotin carb... 217 1e-55 ref|NP_246028.1| (NC_002663) AccC [Pasteurella multocida] >gi|12... 217 2e-55 gb|AAA67356.1| (U12536) 3-methylcrotonyl-CoA carboxylase precurs... 217 2e-55 ref|NP_214048.1| (NC_000918) pyruvate carboxylase n-terminal dom... 217 2e-55 ref|NP_217017.1| (NC_000962) accA1 [Mycobacterium tuberculosis H... 216 2e-55 emb|CAC19838.1| (AJ009972) pyruvate carboxylase [Aspergillus niger] 216 2e-55 emb|CAB87214.1| (AL163641) acetyl/propionyl CoA carboxylase alph... 216 2e-55 ref|NP_420982.1| (NC_002696) propionyl-CoA carboxylase, alpha su... 216 2e-55 gb|AAC69197.1| (AF097728) pyruvate carboxylase [Aspergillus terr... 216 4e-55 ref|NP_229950.1| (NC_002505) acetyl-CoA carboxylase, biotin carb... 216 4e-55 ref|NP_470730.1| (NC_003212) acetyl-CoA carboxylase subunit (bio... 216 4e-55 ref|NP_250702.1| (NC_002516) probable acyl-CoA carboxylase alpha... 215 4e-55 ref|NP_253100.1| (NC_002516) D-alanine--D-alanine ligase [Pseudo... 215 7e-55 ref|NP_437243.1| (NC_003078) putative methylcrotonoyl-CoA carbox... 214 7e-55 ref|NP_214146.1| (NC_000918) biotin carboxylase [Aquifex aeolicu... 214 9e-55 ref|NP_390314.1| (NC_000964) acetyl-CoA carboxylase subunit (bio... 214 9e-55 ref|NP_457756.1| (NC_003198) biotin carboxylase [Salmonella ente... 213 2e-54 sp|P49787|ACCC_BACSU BIOTIN CARBOXYLASE (A SUBUNIT OF ACETYL-COA... 213 2e-54 gb|AAG10491.1|AF279106_53 (AF279106) predicted acetyl-CoA carbox... 213 2e-54 ref|NP_417722.1| (NC_000913) acetyl CoA carboxylase, biotin carb... 212 3e-54 ref|NP_312155.1| (NC_002695) acetyl CoA carboxylase biotin carbo... 212 3e-54 ref|NP_289824.1| (NC_002655) acetyl CoA carboxylase, biotin carb... 212 4e-54 ref|NP_372130.1| (NC_002758) acetyl-CoA carboxylase [Staphylococ... 212 5e-54 ref|NP_420691.1| (NC_002696) acetyl-CoA carboxylase, biotin carb... 212 5e-54 prf||2009329A urea amidolyase [Pichia jadinii] 212 6e-54 gb|AAA23748.1| (M79446) biotin carboxylase [Escherichia coli] 212 6e-54 ref|NP_232019.1| (NC_002505) carbamoyl-phosphate synthase, large... 212 6e-54 pir||S71009 biotin carboxylase protein A2 - Saccharopolyspora er... 211 1e-53 ref|NP_047031.1| (NC_001905) PCACA; L549.5 [Leishmania major] >g... 211 1e-53 gb|AAD25800.1|AC006550_8 (AC006550) Identical to gb|U12536 3-met... 211 1e-53 pdb|1DV2|A Chain A, The Structure Of Biotin Carboxylase, Mutant ... 210 2e-53 gb|AAK97387.1|AF363615_1 (AF363615) D-alanine:D-alanine ligase 2... 210 2e-53 ref|NP_220985.1| (NC_000963) PROPIONYL-COA CARBOXYLASE ALPHA CHA... 210 2e-53 ref|NP_360596.1| (NC_003103) propionyl-CoA carboxylase alpha cha... 210 2e-53 ref|NP_439298.1| (NC_000907) D-alanine--D-alanine ligase (ddlB) ... 209 3e-53 ref|NP_282436.1| (NC_002163) biotin carboxylase [Campylobacter j... 209 3e-53 ref|NP_252890.1| (NC_002516) D-alanine-D-alanine ligase A [Pseud... 209 4e-53 pir||S71006 biotin carboxylase protein A1 - Saccharopolyspora er... 209 4e-53 ref|NP_212334.1| (NC_001318) D-alanine--D-alanine ligase (ddlA) ... 208 6e-53 ref|NP_106581.1| (NC_002678) 3-methylcrotonyl-CoA carboxylase bi... 208 7e-53 ref|NP_376481.1| (NC_003106) 513aa long hypothetical biotin carb... 208 7e-53 gb|AAD37851.1|AF126429_1 (AF126429) JadJ [Streptomyces venezuelae] 208 9e-53 ref|NP_266934.1| (NC_002662) biotin carboxylase (EC 6.3.4.14) [L... 207 1e-52 ref|NP_249185.1| (NC_002516) probable acyl-CoA carboxylase subun... 207 1e-52 ref|NP_245081.1| (NC_002663) DdlB [Pasteurella multocida] >gi|13... 207 1e-52 ref|NP_459135.1| (NC_003197) D-alanine-D-alanine ligase B, affec... 207 1e-52 emb|CAC22142.1| (AL512902) putative acyl-CoA carboxylase complex... 207 2e-52 ref|NP_274851.1| (NC_003112) carbamoyl-phosphate synthase, large... 207 2e-52 ref|NP_454742.1| (NC_003198) D-alanine:D-alanine ligase B [Salmo... 206 2e-52 ref|NP_246444.1| (NC_002663) CarB [Pasteurella multocida] >gi|12... 206 2e-52 emb|CAC21629.1| (AL512667) putative acyl-CoA carboxylase complex... 206 3e-52 ref|NP_414634.1| (NC_000913) D-alanine-D-alanine ligase B, affec... 206 4e-52 ref|NP_283414.1| (NC_003116) carbamoyl phosphate synthase large ... 205 5e-52 sp|Q9TTS3|COA1_BOVIN ACETYL-COA CARBOXYLASE 1 (ACC-ALPHA) [INCLU... 205 6e-52 emb|CAC84690.1| (AJ306727) D-Ala:D-Lac ligase [Enterococcus faec... 205 6e-52 ref|NP_344948.1| (NC_003028) acetyl-CoA carboxylase, biotin carb... 205 6e-52 gb|AAA53140.1| (U08469) 3-methylcrotonyl-CoA carboxylase, biotin... 205 6e-52 ref|NP_357979.1| (NC_003098) Biotin carboxylase (a subunit of ac... 205 6e-52 ref|NP_285788.1| (NC_002655) D-alanine-D-alanine ligase B, affec... 205 7e-52 ref|NP_266825.1| (NC_002662) pyruvate carboxylase (6.4.1.1) [Lac... 204 8e-52 sp|Q28559|COA1_SHEEP ACETYL-COA CARBOXYLASE 1 (ACC-ALPHA) [INCLU... 204 8e-52 sp|P11029|COAC_CHICK ACETYL-COA CARBOXYLASE (ACC) [INCLUDES: BIO... 204 1e-51 ref|NP_404198.1| (NC_003143) D-alanine--D-alanine ligase B [Yers... 204 1e-51 gb|AAB40890.1| (U35023) acyl coenzyme A carboxylase [Corynebacte... 204 1e-51 pdb|1IOW| Complex Of Y216f D-Ala:d-Ala Ligase With Adp And A P... 204 1e-51 pir||S41121 acetyl-CoA carboxylase (EC 6.4.1.2) - human >gi|4523... 204 1e-51 ref|NP_454677.1| (NC_003198) carbamoyl-phosphate synthase large ... 203 2e-51 sp|P14846|CARB_SALTY CARBAMOYL-PHOSPHATE SYNTHASE LARGE CHAIN (C... 203 2e-51 ref|NP_459072.1| (NC_003197) carbamoyl-phosphate synthase, large... 203 2e-51 pir||T42206 probable acyl-CoA carboxylase complex A chain - Stre... 203 2e-51 pir||T42202 probable acyl-CoA carboxylase complex A chain - Stre... 202 3e-51 ref|NP_269768.1| (NC_002737) putative acetyl-CoA carboxylase bio... 202 3e-51 sp|P78992|PYC_PICPA PYRUVATE CARBOXYLASE (PYRUVIC CARBOXYLASE) (... 202 3e-51 gb|AAF16526.1|AF191301_2 (AF191301) ADP-forming, carbamate-phosp... 202 4e-51 emb|CAC84688.1| (AJ306726) D-Ala:D-Lac ligase [Enterococcus faec... 202 4e-51 gb|AAG30191.1| (AF293442) biotin carboxylase [Streptomyces sp. R... 202 4e-51 ref|NP_519642.1| (NC_003295) PROBABLE CARBAMOYL-PHOSPHATE SYNTHA... 201 7e-51 pdb|1CE8|A Chain A, Carbamoyl Phosphate Synthetase From Escheric... 201 9e-51 ref|NP_414574.1| (NC_000913) carbamoyl-phosphate synthase large ... 201 9e-51 ref|NP_285727.1| (NC_002655) carbamoyl-phosphate synthase large ... 201 1e-50 ref|NP_232962.1| (NC_002506) D-alanine--D-alanine ligase [Vibrio... 201 1e-50 gb|AAG30411.1|AF262949_2 (AF262949) pyruvate carboxylase [Mycoba... 200 2e-50 ref|NP_522501.1| (NC_003296) PUTATIVE BIOTIN CARBOXYLASE PROTEIN... 200 2e-50 ref|NP_356721.1| (NC_003063) AGR_L_1864p [Agrobacterium tumefaci... 199 2e-50 ref|NP_356380.1| (NC_003063) AGR_L_1177p [Agrobacterium tumefaci... 199 3e-50 ref|NP_404125.1| (NC_003143) carbamoyl-phosphate synthase large ... 199 3e-50 ref|NP_242487.1| (NC_002570) D-alanyl-D-alanine ligase A [Bacill... 199 3e-50 gb|AAL02056.1|AF294805_1 (AF294805) acetyl-coenzyme A carboxylas... 199 4e-50 gb|AAG40564.1|AF062308_2 (AF062308) acetyl-CoA carboxylase 2 [Ar... 199 4e-50 ref|NP_174850.1| (NC_003070) acetyl-CoA carboxylase, putative [A... 198 7e-50 ref|NP_269044.1| (NC_002737) putative carbamoylphosphate synthet... 198 7e-50 ref|NP_371727.1| (NC_002758) carbamoyl-phosphate synthase large ... 197 1e-49 ref|NP_000655.1| (NM_000664) acetyl-Coenzyme A carboxylase alpha... 197 1e-49 ref|NP_070102.1| (NC_000917) carbamoyl-phosphate synthase, large... 197 1e-49 ref|NP_276131.1| (NC_000916) carbamoyl-phosphate synthase, large... 197 1e-49 ref|NP_174849.1| (NC_003070) acetyl-CoA carboxylase, putative [A... 197 2e-49 ref|NP_071529.1| (NM_022193) acetyl-coenzyme A carboxylase [Ratt... 197 2e-49 dbj|BAA07012.1| (D34630) acetyl-CoA carboxylase [Arabidopsis tha... 197 2e-49 gb|AAF18638.2|AC006228_9 (AC006228) F5J5.19 [Arabidopsis thaliana] 197 2e-49 ref|NP_298397.1| (NC_002488) carbamoyl-phosphate synthase large ... 197 2e-49 pir||T09538 acetyl-CoA carboxylase (EC 6.4.1.2) - alfalfa >gi|49... 197 2e-49 dbj|BAA93643.1| (AB025973) biotin carboxylase [Lactobacillus pla... 197 2e-49 gb|AAC41645.1| (L27074) acetyl-CoA carboxylase [Arabidopsis thal... 196 2e-49 emb|CAA89922.1| (Z49809) unknown [Saccharomyces cerevisiae] 196 2e-49 pir||T02235 acetyl-CoA carboxylase (EC 6.4.1.2) - maize >gi|8547... 196 3e-49 ref|NP_420971.1| (NC_002696) acetyl/propionyl-CoA carboxylase, a... 196 3e-49 pir||T06161 acetyl-CoA carboxylase (EC 6.4.1.2) - wheat >gi|2827... 196 3e-49 gb|AAF04493.2|AF157612_1 (AF157612) acetyl-CoA carboxylase 1 pre... 196 3e-49 pir||A57710 acetyl-CoA carboxylase (EC 6.4.1.2) - wheat >gi|5143... 196 3e-49 ref|NP_520963.1| (NC_003295) PROBABLE D-ALANINE--D-ALANINE LIGAS... 195 4e-49 gb|AAC49275.1| (U39321) acetyl-CoA carboxylase [Triticum aestivu... 195 4e-49 ref|NP_386277.1| (NC_003047) PROBABLE D-ALANINE--D-ALANINE LIGAS... 195 4e-49 ref|NP_103112.1| (NC_002678) D-alanyl-D-alanine ligase [Mesorhiz... 195 5e-49 pir||S73055 pyc protein - Mycobacterium tuberculosis >gi|560527|... 195 5e-49 ref|NP_420636.1| (NC_002696) urea amidolyase-related protein [Ca... 195 5e-49 emb|CAA80280.1| (Z22558) HFA1 [Saccharomyces cerevisiae] 195 6e-49 ref|NP_345739.1| (NC_003028) carbamoyl-phosphate synthase, large... 195 6e-49 ref|NP_358746.1| (NC_003098) Carbamoylphosphate synthase (ammoni... 195 6e-49 sp|P32874|HFA1_YEAST HFA1 PROTEIN 195 7e-49 dbj|BAA24410.1| (D78165) acetyl-coenzyme A carboxylase like carb... 195 7e-49 ref|NP_253444.1| (NC_002516) carbamoylphosphate synthetase large... 195 7e-49 ref|NP_217483.1| (NC_000962) pca [Mycobacterium tuberculosis H37... 194 1e-48 ref|NP_248384.1| (NC_000909) carbamoyl-phosphate synthase, large... 194 1e-48 pir||T44290 biotin carboxylase (EC 6.3.4.14) [imported] - Sulfol... 194 1e-48 emb|CAB48407.1| (AJ243652) urea amidolyase homologue [Pseudomona... 194 1e-48 emb|CAC19876.1| (AJ131866) acetyl-CoA carboxylase [Brassica napus] 194 1e-48 emb|CAB59603.1| (AL132662) pyruvate carboxylase [Streptomyces co... 193 2e-48 pir||T07084 acetyl-CoA carboxylase (EC 6.4.1.2) A - soybean >gi|... 193 2e-48 gb|AAC39331.1| (AF029896) acetyl-coenzyme A carboxylase [Triticu... 193 2e-48 pir||T06162 acetyl-CoA carboxylase (EC 6.4.1.2) - wheat (fragmen... 193 2e-48 emb|CAB44435.1| (AJ242913) carbamoylphosphate synthase (large su... 191 7e-48 ref|NP_280339.1| (NC_002607) biotin carboxylase; Acc [Halobacter... 191 8e-48 ref|NP_343814.1| (NC_002754) Biotin carboxylase a subunit of pro... 191 9e-48 ref|NP_223728.1| (NC_000921) BIOTIN CARBOXYLASE [Helicobacter py... 191 1e-47 ref|NP_207168.1| (NC_000915) biotin carboxylase (accC) [Helicoba... 191 1e-47 ref|NP_389435.1| (NC_000964) carbamoyl-phosphate synthetase (cat... 191 1e-47 gb|AAF59156.1| (AE003839) CG8723 gene product [Drosophila melano... 190 1e-47 ref|NP_349251.1| (NC_003030) Carbamoylphosphate synthase large s... 190 1e-47 ref|NP_013934.1| (NC_001145) Similar to acetyl-coenzyme A carbox... 190 1e-47 gb|AAB67843.1| (U40341) carbamoyl phosphate synthetase large cha... 190 2e-47 emb|CAC19875.1| (AJ131865) acetyl-CoA carboxylase [Brassica napus] 190 2e-47 pir||T44419 carbamoyl-phosphate synthase (glutamine-hydrolyzing)... 190 2e-47 gb|AAA37062.1| (J05503) carbamoyl-phosphate synthetase (E.C.6.3.... 190 2e-47 sp|P08955|PYR1_MESAU CAD PROTEIN [INCLUDES: GLUTAMINE-DEPENDENT ... 190 2e-47 pir||T07920 probable acetyl-CoA carboxylase (EC 6.4.1.2) - rape ... 189 2e-47 pir||T07923 acetyl-CoA carboxylase (EC 6.4.1.2) A - rape (fragme... 189 3e-47 emb|CAA03928.1| (AJ000109) carbamoylphosphate synthetase [Lactoc... 189 3e-47 ref|NP_281472.1| (NC_002163) carbamoyl-phosphate synthase large ... 189 3e-47 ref|NP_267519.1| (NC_002662) carbamoylphosphate synthetase [Lact... 189 4e-47 ref|NP_215900.1| (NC_000962) Carbamoylphosphate synthase large s... 188 8e-47 ref|NP_487849.1| (NC_003272) carbamoyl phosphate synthetase larg... 187 1e-46 ref|NP_243402.1| (NC_002570) carbamoyl-phosphate synthetase (cat... 187 1e-46 ref|NP_213366.1| (NC_000918) D-alanine:D-alanine ligase [Aquifex... 187 1e-46 sp|O51927|DDL_BUCAP D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 187 1e-46 sp|P46537|CARB_BACCL CARBAMOYL-PHOSPHATE SYNTHASE, PYRIMIDINE-SP... 187 1e-46 ref|NP_228072.1| (NC_000853) D-alanine--D-alanine ligase [Thermo... 186 2e-46 gb|AAA74996.1| (U11295) carbamoyl phosphate synthetase (glutamin... 186 3e-46 pir||T07081 acetyl-CoA carboxylase (EC 6.4.1.2) B - soybean (fra... 185 4e-46 gb|AAA68280.1| (M27174) carbamyl phosphate synthetase [Saccharom... 185 4e-46 ref|NP_012405.1| (NC_001142) First and second steps of pyrimidin... 185 4e-46 emb|CAA60825.1| (X87371) carbamyl phosphate synthetase [Saccharo... 185 6e-46 ref|NP_301455.1| (NC_002677) putative carbamoyl-phosphate syntha... 185 6e-46 ref|NP_281959.1| (NC_002163) putative D-alanine--D-alanine ligas... 185 7e-46 emb|CAA72256.1| (Y11467) carbamoyl-phosphate synthase (glutamine... 185 7e-46 gb|AAD09129.1| (AF112473) PyrABCN [Emericella nidulans] 184 9e-46 ref|NP_294391.1| (NC_001263) carbamoyl-phosphate synthase, large... 184 9e-46 ref|NP_301567.1| (NC_002677) acetyl/propionyl CoA carboxylase [a... 184 1e-45 ref|XP_002428.5| (XM_002428) similar to carbamoyl-phosphate synt... 184 1e-45 sp|P77886|CARB_LACPL CARBAMOYL-PHOSPHATE SYNTHASE, PYRIMIDINE-SP... 184 1e-45 ref|NP_239976.1| (NC_002528) carbamoyl-phosphate synthase large ... 184 1e-45 pir||A55579 biotin carboxyl carrier protein - Mycobacterium lepr... 184 1e-45 ref|NP_004332.1| (NM_004341) carbamoyl-phosphate synthetase 2, a... 184 1e-45 emb|CAB95026.1| (AJ237851) D-alanine-D-alanine ligase [Prochloro... 184 2e-45 ref|NP_285633.1| (NC_001264) carboxylase [Deinococcus radioduran... 184 2e-45 gb|AAA24455.1| (J05126) purD (EC 6.3.4.13) [Escherichia coli] 183 2e-45 ref|NP_446374.1| (NM_053922) acetyl-Coenzyme A carboxylase beta ... 183 3e-45 emb|CAB56843.1| (X99978) carbamoyl-phosphate synthase large subu... 183 3e-45 pir||T30568 acetyl-CoA carboxylase (EC 6.4.1.2) - Emericella nid... 183 3e-45 ref|NP_290637.1| (NC_002655) phosphoribosylglycinamide synthetas... 183 3e-45 ref|NP_217802.1| (NC_000962) accA3 [Mycobacterium tuberculosis H... 183 3e-45 gb|AAB62175.1| (U94527) vancomycin resistance protein B [Enteroc... 182 3e-45 ref|NP_418433.1| (NC_000913) phosphoribosylglycinamide synthetas... 182 4e-45 ref|NP_245161.1| (NC_002663) PurD [Pasteurella multocida] >gi|13... 182 6e-45 ref|NP_284760.1| (NC_003116) D-alanine--D-alanine ligase B [Neis... 182 7e-45 pir||T51694 D-alanine--D-alanine ligase (EC 6.3.2.4) [imported] ... 181 8e-45 ref|NP_228367.1| (NC_000853) carbamoyl-phosphate synthase, large... 181 8e-45 gb|AAD53933.1|AF179611_17 (AF179611) D-alanine:D-alanine ligase ... 181 9e-45 ref|NP_229931.1| (NC_002505) phosphoribosylamine--glycine ligase... 181 1e-44 pdb|1GSO|A Chain A, Glycinamide Ribonucleotide Synthetase (Gar-S... 181 1e-44 ref|NP_457899.1| (NC_003198) phosphoribosylglycineamide syntheta... 181 1e-44 ref|NP_463044.1| (NC_003197) phosphoribosylglycinamide synthetas... 180 1e-44 pdb|1A9X|A Chain A, Carbamoyl Phosphate Synthetase: Caught In Th... 180 1e-44 sp|Q91437|PYR1_SQUAC CAD PROTEIN [INCLUDES: GLUTAMINE-DEPENDENT ... 180 1e-44 sp|Q09794|PYR1_SCHPO URA1 PROTEIN [INCLUDES: GLUTAMINE-DEPENDENT... 180 2e-44 ref|NP_273472.1| (NC_003112) D-alanine--D-alanine ligase [Neisse... 180 2e-44 ref|NP_215488.1| (NC_000962) accA2 [Mycobacterium tuberculosis H... 180 2e-44 ref|NP_442333.1| (NC_000911) carbamoyl-phosphate synthase, pyrim... 179 4e-44 ref|NP_389006.1| (NC_000964) carbamoyl-phosphate transferase-arg... 179 5e-44 gb|AAB62176.1| (U94528) vancomycin resistance protein B [Enteroc... 179 5e-44 gb|AAB62174.1| (U94526) vancomycin resistance protein B [Enteroc... 178 6e-44 emb|CAA55651.1| (X79049) vanA2 [Oerskovia turbata] 178 7e-44 pir||S49991 acetyl-CoA carboxylase (EC 6.4.1.2) - smut fungus (U... 178 8e-44 ref|NP_465360.1| (NC_003210) highly similar to carbamoyl-phospha... 178 9e-44 ref|NP_103843.1| (NC_002678) carbamoyl-phosphate synthase large ... 177 1e-43 ref|NP_471283.1| (NC_003212) highly similar to carbamoyl-phospha... 177 2e-43 ref|NP_250091.1| (NC_002516) probable pyruvate carboxylase [Pseu... 176 3e-43 pir||S65074 pyrimidine synthesis protein URA1 - fission yeast (... 175 5e-43 ref|NP_421694.1| (NC_002696) carbamoyl-phosphate synthase, large... 175 5e-43 pir||A48757 acetyl-CoA carboxylase (EC 6.4.1.2) - Cyclotella cry... 175 6e-43 ref|NP_385682.1| (NC_003047) PROBABLE CARBAMOYL-PHOSPHATE SYNTHA... 175 7e-43 sp|P20054|PYR1_DICDI PROTEIN PYR1-3 [INCLUDES: GLUTAMINE-DEPENDE... 174 1e-42 sp|P78820|COAC_SCHPO ACETYL-COA CARBOXYLASE (ACC) [INCLUDES: BIO... 174 1e-42 pir||T33717 carbamoyl-phosphate synthase (glutamine-hydrolyzing)... 174 1e-42 gb|AAA20073.1| (M92156) acetyl-CoA carboxylase [Saccharomyces ce... 174 2e-42 sp|Q99148|PUR2_YARLI BIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN AD... 174 2e-42 ref|NP_355138.1| (NC_003062) AGR_C_3955p [Agrobacterium tumefaci... 174 2e-42 ref|NP_014413.1| (NC_001146) acetyl-CoA carboxylase; Acc1p [Sacc... 174 2e-42 ref|NP_001084.1| (NM_001093) acetyl-Coenzyme A carboxylase beta ... 174 2e-42 emb|CAB93363.1| (AL357523) carbamoylphosphate synthetase large c... 174 2e-42 ref|NP_280547.1| (NC_002607) carbamoyl-phosphate synthase large ... 173 2e-42 pir||S23738 pyr1-3 protein - slime mold (Dictyostelium discoideu... 173 2e-42 ref|NP_532851.1| (NC_003304) carbamoylphosphate synthase large s... 173 2e-42 ref|NP_439049.1| (NC_000907) phosphoribosylamine--glycine ligase... 173 2e-42 gb|AAD51318.2| (AF169248) acetylglutamate-activated carbamoyl ph... 173 3e-42 ref|NP_355054.1| (NC_003062) AGR_C_3788p [Agrobacterium tumefaci... 172 3e-42 gb|AAB49636.1| (U72704) vancomycin resistance protein [Enterococ... 172 4e-42 gb|AAA60989.1| (L29641) D-alanine-D-alanine ligase-related enzym... 172 4e-42 ref|NP_174283.1| (NC_003070) carbamoylphosphate synthetase, puta... 172 4e-42 gb|AAA60988.1| (L29640) D-alanine-D-alanine ligase-related enzym... 172 4e-42 gb|AAC78719.1| (U43091) carbamoylphosphate synthetase heavy subu... 172 5e-42 ref|NP_532764.1| (NC_003304) D-alanine:D-alanine ligase [Agrobac... 172 5e-42 ref|NP_241500.1| (NC_002570) phosphoribosylglycinamide synthetas... 172 5e-42 ref|NP_213797.1| (NC_000918) carbamoyl-phosphate synthase large ... 172 6e-42 ref|NP_539439.1| (NC_003317) CARBAMOYL-PHOSPHATE SYNTHASE LARGE ... 172 6e-42 pir||I67805 purine synthesis multifunctional protein - mouse >gi... 172 7e-42 gb|AAC16915.1| (U91914) D-alanine:D-alanine ligase [Streptococcu... 171 7e-42 gb|AAD43968.1|AF119250_1 (AF119250) carbamoyl-phosphate syntheta... 171 8e-42 ref|NP_407179.1| (NC_003143) phosphoribosylamine--glycine ligase... 171 8e-42 ref|NP_034386.1| (NM_010256) phosphoribosylglycinamide formyltra... 171 8e-42 gb|AAB62520.1| (U91913) D-alanine:D-alanine ligase [Streptococcu... 171 1e-41 ref|NP_253542.1| (NC_002516) phosphoribosylamine--glycine ligase... 170 1e-41 ref|XP_011009.3| (XM_011009) methylcrotonoyl-Coenzyme A carboxyl... 170 1e-41 ref|NP_493922.1| (NM_061521) acetyl-CoA carboxylase [Caenorhabdi... 170 1e-41 ref|NP_223393.1| (NC_000921) D-ALANINE--D-ALANINE LIGASE [Helico... 170 2e-41 ref|NP_058768.1| (NM_017072) carboamyl-phosphate synthetase 1 [R... 170 2e-41 gb|AAF37343.1|AF170804_1 (AF170804) D-alanine:D-alanine ligase [... 170 2e-41 ref|NP_214438.1| (NC_000918) carbamoyl-phosphate synthase large ... 170 2e-41 ref|NP_223571.1| (NC_000921) CARBAMOYL-PHOSPHATE SYNTHASE LARGE ... 170 2e-41 ref|NP_298089.1| (NC_002488) D-alanine--D-alanine ligase B [Xyle... 170 3e-41 ref|NP_299258.1| (NC_002488) glycinamide ribonucleotide syntheta... 169 3e-41 ref|NP_441646.1| (NC_000911) glycinamide ribonucleotide syntheta... 169 3e-41 gb|AAB41852.1| (U69163) D-Alanine:D-Alanine ligase [Streptococcu... 169 3e-41 pir||T46882 phosphoribosylamine--glycine ligase (EC 6.3.4.13) [i... 169 3e-41 gb|AAC53250.1| (U20892) glycinamide ribonucleotide synthetase [M... 169 3e-41 gb|AAB62519.1| (U91912) D-alanine:D-alanine ligase [Streptococcu... 169 3e-41 pir||S53602 carbamoyl-phosphate synthase (glutamine-hydrolyzing)... 169 4e-41 gb|AAA96435.1| (L31362) carbamyl phosphate synthetase III [Squal... 169 5e-41 ref|NP_207711.1| (NC_000915) carbamoyl-phosphate synthase (gluta... 169 5e-41 gb|AAC60207.1| (U65893) carbamoyl-phosphate synthetase III [Onco... 169 5e-41 ref|NP_520312.1| (NC_003295) PROBABLE PHOSPHORIBOSYLAMINE--GLYCI... 169 5e-41 gb|AAB17900.1| (U39775) D-alanine:D-alanine ligase [Enterococcus... 169 5e-41 pir||T39898 carbamoyl-phosphate synthase (glutamine-hydrolyzing)... 169 5e-41 gb|AAF48639.2| (AE003503) CG18572 gene product [Drosophila melan... 168 9e-41 ref|NP_275136.1| (NC_003112) phosphoribosylamine--glycine ligase... 168 9e-41 dbj|BAA94293.1| (AB029444) Carbamoyl-phosphate Synthetase [Leish... 167 1e-40 ref|NP_243761.1| (NC_002570) arginine specific carbamoyl-phospha... 167 1e-40 ref|NP_207532.1| (NC_000915) D-alanine:D-alanine ligase A (ddlA)... 167 1e-40 gb|AAB41856.1| (U69167) D-Alanine:D-Alanine ligase [Streptococcu... 167 1e-40 gb|AAB62566.1| (AF006491) carbamoyl-phosphate synthetase III; CP... 167 1e-40 ref|NP_388535.1| (NC_000964) phosphoribosylglycinamide synthetas... 167 2e-40 ref|NP_421346.1| (NC_002696) D-alanine--D-alanine ligase B [Caul... 167 2e-40 pir||T30820 carbamoyl-phosphate synthase (ammonia) (EC 6.3.4.16)... 167 2e-40 ref|XP_040883.1| (XM_040883) similar to CARBAMOYL-PHOSPHATE SYNT... 167 2e-40 ref|NP_012643.1| (NC_001142) carbamyl phosphate synthetase; Cpa2... 167 2e-40 gb|AAB17901.1| (U39777) D-alanine:D-alanine ligase [Enterococcus... 166 2e-40 gb|AAF37344.1|AF170805_1 (AF170805) D-alanine:D-alanine ligase [... 166 2e-40 gb|AAF37342.1|AF170803_1 (AF170803) D-alanine:D-alanine ligase [... 166 3e-40 ref|NP_000810.1| (NM_000819) phosphoribosylglycinamide formyltra... 165 4e-40 gb|AAB17899.1| (U39778) D-alanine:D-alanine ligase [Enterococcus... 165 4e-40 ref|NP_283078.1| (NC_003116) phosphoribosylamine--glycine ligase... 165 4e-40 gb|AAK28428.1|AF251259_1 (AF251259) D-alanine-D-X ligase VanD4 [... 165 4e-40 gb|AAF37349.1|AF170810_1 (AF170810) D-alanine:D-alanine ligase [... 165 5e-40 gb|AAD18071.1| (AF129814) carbamyl phosphate synthetase II; CPS.... 165 5e-40 ref|NP_213510.1| (NC_000918) phosphoribosylamine-glycine ligase ... 165 5e-40 ref|NP_359970.1| (NC_003103) D-alanine--D-alanine ligase [EC:6.3... 165 7e-40 gb|AAA24785.1| (L15304) vanB2 ORF [Enterococcus faecalis] 165 7e-40 pir||T42531 acetyl-CoA carboxylase (EC 6.4.1.2) - fission yeast ... 165 8e-40 ref|NP_220634.1| (NC_000963) D-ALANINE--D-ALANINE LIGASE (ddlB) ... 165 8e-40 gb|AAB17897.1| (U39774) D-alanine:D-alanine ligase [Enterococcus... 165 8e-40 sp|Q91293|CPSM_RANCA CARBAMOYL-PHOSPHATE SYNTHASE [AMMONIA], MIT... 164 9e-40 gb|AAB41853.1| (U69164) D-Alanine:D-Alanine ligase [Streptococcu... 164 1e-39 ref|NP_495838.1| (NM_063437) glutamine-dependent carbamoyl-phosp... 164 1e-39 dbj|BAA06809.1| (D32051) GARS protein [Homo sapiens] 164 1e-39 ref|NP_503072.1| (NM_070671) Carbamoyl-phosphate synthase (CPSas... 164 2e-39 gb|AAF71749.1| (AF257743) phosphoribosylglycinamide formyltransf... 164 2e-39 ref|NP_001866.1| (NM_001875) carbamoyl-phosphate synthetase 1, m... 163 2e-39 pir||T18410 carbamoyl-phosphate synthase (glutamine-hydrolyzing)... 163 3e-39 gb|AAG10785.1| (AF286897) carbamoyl phosphate synthetase II [Pla... 162 3e-39 gb|AAF37348.1| (AF170809) D-alanine:D-alanine ligase [Enterococc... 162 3e-39 gb|AAB41855.1| (U69166) D-Alanine:D-Alanine ligase [Streptococcu... 162 4e-39 ref|NP_539499.1| (NC_003317) D-ALANINE--D-ALANINE LIGASE [Brucel... 161 7e-39 gb|AAG10786.1| (AF286898) carbamoyl phosphate synthetase II [Pla... 161 8e-39 gb|AAF04494.2|AF157613_1 (AF157613) acetyl-CoA carboxylase 2 [To... 161 8e-39 pir||A49930 carB protein homolog - Mycobacterium bovis (strain B... 161 1e-38 ref|NP_107762.1| (NC_002678) phosphoribosylamine-glycine ligase ... 161 1e-38 emb|CAB95892.1| (AL359988) putative acetyl/propionyl CoA carboxy... 160 1e-38 ref|NP_422008.1| (NC_002696) carbamoyl-phosphate synthase/carbox... 160 2e-38 gb|AAB41851.1| (U69162) D-Alanine:D-Alanine ligase [Streptococcu... 160 2e-38 ref|NP_540436.1| (NC_003317) PHOSPHORIBOSYLAMINE-GLYCINE LIGASE ... 160 2e-38 ref|NP_487550.1| (NC_003272) phosphoribosylamine--glycine ligase... 160 2e-38 pir||T30518 carbamoyl-phosphate synthase (ammonia) (EC 6.3.4.16)... 160 2e-38 gb|AAG09178.1| (AF174494) purine biosynthetic pathway protein AD... 160 2e-38 sp|P95803|DDL_STRMU PUTATIVE D-ALANINE--D-ALANINE LIGASE (D-ALAN... 160 2e-38 gb|AAL38923.1| (AF325676) acetyl-CoA carboxylase [Lolium multifl... 160 3e-38 sp|Q9ZF44|PUR2_LACLA PHOSPHORIBOSYLAMINE--GLYCINE LIGASE (GARS) ... 159 3e-38 ref|NP_267669.1| (NC_002662) phosphoribosylamine-glycine ligase ... 159 4e-38 ref|NP_377467.1| (NC_003106) 1049aa long hypothetical carbamoyl-... 159 4e-38 gb|AAF37347.1|AF170808_1 (AF170808) D-alanine:D-alanine ligase [... 159 5e-38 ref|NP_384964.1| (NC_003047) PROBABLE PHOSPHORIBOSYLAMINE--GLYCI... 158 6e-38 emb|CAA04374.1| (AJ000883) purD [Lactococcus lactis] 158 7e-38 ref|NP_268447.1| (NC_002737) phosphoribosylamine-glycine ligase ... 158 9e-38 ref|NP_523497.1| (NM_078773) adenosine 3; Complementation group ... 157 1e-37 ref|NP_172454.1| (NC_003070) putative phosphoribosylglycinamide ... 157 1e-37 ref|NP_342159.1| (NC_002754) Carbamoyl-phosphate synthase large ... 157 1e-37 sp|Q26255|PUR2_CHITE TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN A... 157 1e-37 sp|P46056|CARB_TRICU CARBAMOYL-PHOSPHATE SYNTHASE, ARGININE-SPEC... 157 1e-37 dbj|BAB63438.1| (AB058945) phosphoribosylamine-glycine ligase [S... 157 2e-37 sp|P20772|PUR2_SCHPO BIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN AD... 157 2e-37 dbj|BAB20832.1| (AB045609) phosphoribosylamine-glycine ligase [S... 157 2e-37 ref|NP_344600.1| (NC_003028) phosphoribosylamine--glycine ligase... 156 3e-37 gb|AAB17898.1| (U39776) D-alanine:D-alanine ligase [Enterococcus... 156 3e-37 Sequences not found previously or not previously below threshold: >ref|NP_286119.1| (NC_002655) Z0477 gene product [Escherichia coli O157:H7 EDL933] ref|NP_308458.1| (NC_002695) D-alanine-D-alanine ligase A [Escherichia coli O157:H7] ref|NP_414915.1| (NC_000913) D-alanine-D-alanine ligase A [Escherichia coli K12] sp|P23844|DDLA_ECOLI D-ALANINE--D-ALANINE LIGASE A (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||CEECDA D-alanine--D-alanine ligase (EC 6.3.2.4) A - Escherichia coli gb|AAA23671.1| (M58467) D-alanine:D-alanine ligase A [Escherichia coli] gb|AAB18104.1| (U73857) D-alanine--D-alanine ligase A [Escherichia coli] gb|AAC73484.1| (AE000144) D-alanine-D-alanine ligase A [Escherichia coli K12] gb|AAG54727.1|AE005217_5 (AE005217) Z0477 gene product [Escherichia coli O157:H7 EDL933] dbj|BAB33854.1| (AP002551) D-alanine-D-alanine ligase A [Escherichia coli O157:H7] Length = 364 Score = 307 bits (787), Expect = 1e-82 Identities = 364/364 (100%), Positives = 364/364 (100%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN Sbjct: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML Sbjct: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL Sbjct: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ Sbjct: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR Sbjct: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL Sbjct: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 Query: 361 KTTM 364 KTTM Sbjct: 361 KTTM 364 >ref|NP_454975.1| (NC_003198) D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica serovar Typhi] ref|NP_459375.1| (NC_003197) D-alanine-D-alanine ligase A [Salmonella typhimurium LT2] sp|P15051|DDLA_SALTY D-alanine--D-alanine ligase A (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) pir||CEEBDT D-alanine--D-alanine ligase (EC 6.3.2.4) A - Salmonella typhimurium gb|AAA27056.1| (M20793) D-alanine:D-alanine ligase (EC 6.3.2.4) [Salmonella typhimurium] gb|AAL19334.1| (AE008713) D-alanine-D-alanine ligase A [Salmonella typhimurium LT2] emb|CAD08835.1| (AL627266) D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica serovar Typhi] Length = 364 Score = 306 bits (783), Expect = 3e-82 Identities = 327/364 (89%), Positives = 344/364 (93%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDK+RFDVVLLGIDK GQWHV+DA NYL N Sbjct: 1 MAKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQN 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 ADDPAHIALRPSA SLAQVPGKH+HQLI+AQNGQPLPTVDVIFPIVHGTLGEDGSLQGML Sbjct: 61 ADDPAHIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 RVANLPFVGSDVL+SAACMDKDV KRLLRDAGLNIAPFITLTR NRH SFAEVES+LGL Sbjct: 121 RVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGL 180 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 PLFVKPANQGSSVGVSKV +E QY AV LAFEFDHKV+VEQGIKGREIECAVLGNDNPQ Sbjct: 181 PLFVKPANQGSSVGVSKVANEAQYQQAVALAFEFDHKVVVEQGIKGREIECAVLGNDNPQ 240 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 ASTCGEIVL S+FYAYDTKYID++GA+VVVPA I E+NDKIRAIA+QAYQTLGCAGMAR Sbjct: 241 ASTCGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMAR 300 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 VDVFLT +NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLI+RLIELALERH A+NAL Sbjct: 301 VDVFLTADNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELALERHTANNAL 360 Query: 361 KTTM 364 KTTM Sbjct: 361 KTTM 364 >gb|AAB17902.2| (U39790) D-alanine:D-alanine ligase [Enterococcus faecium] Length = 358 Score = 285 bits (730), Expect = 4e-76 Identities = 139/358 (38%), Positives = 215/358 (59%), Gaps = 10/358 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ +++GG+SAEHEVS+ SA ++++AI + + V L+ I K+GQW + D Sbjct: 1 MKITLLYGGRSAEHEVSILSAFSVLNAIYYNYYQVQLVFITKEGQWVKGPLLTEKPASKD 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 H++ PS + GK G+ ++FP++HG GEDG++QG L Sbjct: 61 VLHLSWDPSGQTEEGFTGK------VINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETL 114 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRHNISFAEVESKLGL 180 N+P+VG+ VL SA MDK +TK +L+ AG+ P++ + + F + E L Sbjct: 115 NMPYVGAGVLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLY 174 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+FVKPAN GSSVG++K + E+ A+ A+++D + IVEQGI+ REIE AVLGN++ + Sbjct: 175 PMFVKPANMGSSVGITKAENREELQNALATAYQYDSRAIVEQGIEAREIEVAVLGNEDVR 234 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 + GE+V FY Y+ KYI+ ++ +PA + E+ K + A AY LG +G++R Sbjct: 235 TTLPGEVVKDVAFYDYEAKYINNK-IEMQIPAEVPEEVYQKAQEYAKLAYTMLGGSGLSR 293 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 D FLT +NE+ +NE+N++PGFT SMYP LW+ GL Y DLI LI+L + R+ Sbjct: 294 CDFFLTNKNELFLNELNSMPGFTEFSMYPLLWENMGLKYGDLIEELIQLGMNRYHQRQ 351 >gb|AAG49141.1|AF215736_1 (AF215736) D-alanine:D-alanine ligase [Enterococcus faecium] Length = 358 Score = 283 bits (723), Expect = 2e-75 Identities = 138/358 (38%), Positives = 214/358 (59%), Gaps = 10/358 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ +++GG+SA HEVS+ SA ++++AI + + V L+ I K+GQW + D Sbjct: 1 MKITLLYGGRSAGHEVSILSAFSVLNAIYYNYYQVQLVFITKEGQWVKGPLLTEKPASKD 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 H++ PS + GK G+ ++FP++HG GEDG++QG L Sbjct: 61 VLHLSWDPSGQTEEGFTGK------VINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETL 114 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRHNISFAEVESKLGL 180 N+P+VG+ VL SA MDK +TK +L+ AG+ P++ + + F + E L Sbjct: 115 NMPYVGAGVLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLY 174 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+FVKPAN GSSVG++K + E+ A+ A+++D + IVEQGI+ REIE AVLGN++ + Sbjct: 175 PMFVKPANMGSSVGITKAENREELQNALATAYQYDSRAIVEQGIEAREIEVAVLGNEDVR 234 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 + GE+V FY Y+ KYI+ ++ +PA + E+ K + A AY LG +G++R Sbjct: 235 TTLPGEVVKDVAFYDYEAKYINNK-IEMQIPAEVPEEVYQKAQEYAKLAYTMLGGSGLSR 293 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 D FLT +NE+ +NE+N++PGFT SMYP LW+ GL Y DLI LI+L + R+ Sbjct: 294 CDFFLTNKNELFLNELNSMPGFTEFSMYPLLWENMGLKYGDLIEELIQLGMNRYHQRQ 351 >sp|Q47827|DDL_ENTHR D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAB17904.1| (U39788) D-alanine:D-alanine ligase [Enterococcus hirae] Length = 358 Score = 282 bits (722), Expect = 3e-75 Identities = 141/358 (39%), Positives = 213/358 (59%), Gaps = 10/358 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ +++GG+SAEH+VS+ SA ++++AI + + V L+ I K+GQW + + Sbjct: 1 MKITLLYGGRSAEHDVSVLSAFSVLNAIYYTYYQVQLIFISKEGQWVKGPLLTEKPTSKE 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 H+ PS G+ G+ ++FP++HG GEDG++QG L Sbjct: 61 DLHLTWDPSGKVTDGFTGR------VINPGEIKEEGTIVFPVLHGPNGEDGTIQGFLETL 114 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---ANRHNISFAEVESKLGL 180 NLP+VG+ VL SA MDK +TK +L+ AG+ P++ + + F + E L Sbjct: 115 NLPYVGAGVLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKIFDQCEGSLLY 174 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+FVKPAN GSSVG+SK + E+ A+ LA+++D + IVEQGI+ REIE AVLGN++ + Sbjct: 175 PMFVKPANMGSSVGISKAENREELQNALALAYQYDSRAIVEQGIEAREIEVAVLGNEDVR 234 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 + GE+V FY YD KYI+ ++ +PA + E+ K + A AY LG +G++R Sbjct: 235 TTLPGEVVKDVAFYDYDAKYINNK-IEMQIPAEVPEEVYQKAQEYAKIAYTMLGGSGLSR 293 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 D FLT +NE+ +NE+NT+PGFT SMYP LW+ GL Y DLI LI+L + R Sbjct: 294 CDFFLTNKNELFLNELNTMPGFTQFSMYPLLWENMGLKYGDLIEELIQLGINRFNQRQ 351 >ref|NP_372607.1| (NC_002758) D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus Mu50] ref|NP_375191.1| (NC_002745) D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus N315] dbj|BAB43170.1| (AP003136) D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus N315] dbj|BAB58245.1| (AP003364) D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus Mu50] Length = 356 Score = 273 bits (699), Expect = 2e-72 Identities = 147/367 (40%), Positives = 220/367 (59%), Gaps = 15/367 (4%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K + IVFGGKSAEHEVS+ +A+N+++AIDK ++ V ++ I G W + + Sbjct: 1 MTKENICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIK 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + D H+ A ++Q+ + D +FP++HG GEDG++QG+ Sbjct: 61 STDELHLEN-GEALEISQLLKESSSG----------QPYDAVFPLLHGPNGEDGTIQGLF 109 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS---FAEVESK 177 V ++P+VG+ VL++A+ MDK V K+L GL P+I+ R+ V K Sbjct: 110 EVLDVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDK 169 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 L P+FVKPAN GSSVG+SK +E + + AF+FD K+++EQG+ REIE AVLGND Sbjct: 170 LNYPVFVKPANLGSSVGISKCNNEAELKEGIKEAFQFDRKLVIEQGVNAREIEVAVLGND 229 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 P+A+ GE+V FY Y +KY D ++ +PA + ++ +R +A++A++ C+G Sbjct: 230 YPEATWPGEVVKDVAFYDYKSKYKDGK-VQLQIPADLDEDVQLTLRNMALEAFKATDCSG 288 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 + R D F+T +N++ INE N +PGFT SMYPKLW+ GL Y +LIT+LIELA ERH Sbjct: 289 LVRADFFVTEDNQIYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELAKERHQDK 348 Query: 358 NALKTTM 364 K + Sbjct: 349 QKNKYKI 355 >ref|NP_388337.1| (NC_000964) D-alanyl-D-alanine ligase A [Bacillus subtilis] sp|P96612|DDL_BACSU D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||D69613 D-alanine--D-alanine ligase (EC 6.3.2.4) A ddlA - Bacillus subtilis dbj|BAA19293.1| (AB001488) PROBABLE D-ALANINE--D-ALANINE LIGASE A [Bacillus subtilis] emb|CAB12263.1| (Z99106) D-alanyl-D-alanine ligase A [Bacillus subtilis] Length = 354 Score = 273 bits (698), Expect = 2e-72 Identities = 152/357 (42%), Positives = 217/357 (60%), Gaps = 8/357 (2%) Query: 10 FGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIAL 69 +GGKSAEH VSLQ+A ++ A++ +FD+ + I ++G+W ++ Sbjct: 2 YGGKSAEHNVSLQTALAVIKALNTEKFDIHPIYITEKGEWVRGARLTEPVSNVKMLQFEQ 61 Query: 70 RPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVG 129 SA P ++ + Q +DV+FP++HG GEDG++QGML + N+P+VG Sbjct: 62 GGSAF----SPAALNQEMFPQEASQQNEAIDVVFPLLHGPNGEDGTIQGMLELLNIPYVG 117 Query: 130 SDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRH---NISFAEVESKLGLPLFVKP 186 + VLAS+A MDK V K L GL A + + + S EVE +LG P FVKP Sbjct: 118 NGVLASSAGMDKVVMKHLFAQVGLAQAKYAAFLKKDWTRSPKESCEEVEQELGYPCFVKP 177 Query: 187 ANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTCGE 246 AN GSSVG+SK + E+ A +LAF++D KV+VE+GI GREIE VLGND+P+ S GE Sbjct: 178 ANLGSSVGISKCRNREELQKAFELAFQYDRKVVVEEGINGREIEIGVLGNDDPKCSVVGE 237 Query: 247 IVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT 306 I +DFY Y KY D D + +PA + E I +A++A++ + +G+ R D FLT Sbjct: 238 IAPKTDFYDYKAKYEDGDTDLM-IPAIVTDEEYATISDMAIKAFKAIDGSGLVRADFFLT 296 Query: 307 PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALKTT 363 + EV+INE+NT+PGFT SM+P LW+ +G+ Y DLI +L+ELA ERHA +K T Sbjct: 297 ADGEVLINEVNTMPGFTPFSMFPLLWKEAGVEYADLIEQLVELAKERHAEKQLIKHT 353 >gb|AAK67986.1|AF297332_1 (AF297332) 3-methylcrotonyl-CoA carboxylase biotin-containing subunit [Homo sapiens] Length = 725 Score = 268 bits (686), Expect = 5e-71 Identities = 56/354 (15%), Positives = 121/354 (33%), Gaps = 22/354 (6%) Query: 15 AEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSAT 74 + + + +NI + +R ++ + + V + Y + H+ + A Sbjct: 37 RTMKYTTATGRNITKVLIANRGEIACRVMRTAKKLGVQTVAVYSEADRNSMHVDMADEAY 96 Query: 75 SLAQVPG-KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVL 133 S+ P + + I P G L E+ + + + F+G Sbjct: 97 SIGPAPSQQSYLSMEKIIQVAKTSAAQAIHPGC-GFLSENMEFAELCKQEGIIFIGPPPS 155 Query: 134 ASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSV 193 A K +K ++ AG+ + ++ + E ++G P+ +K G Sbjct: 156 AIRDMGIKSTSKSIMAAAGVPVVEGYHG--EDQSDQCLKEHARRIGYPVMIKAVRGGGGK 213 Query: 194 GVSKVTSEEQYAIAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGE 246 G+ V SE+++ ++ A D +++E+ + R +E V G+ + A E Sbjct: 214 GMRIVRSEQEFQEQLESARREAKKSFNDDAMLIEKFVDTPRHVEVQVFGDHHGNAVYLFE 273 Query: 247 IVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT 306 K I+E I E+ K+ AV+A + + G V+ + Sbjct: 274 RD--CSVQRRHQKIIEE-----APAPGIKSEVRKKLGEAAVRAAKAVNYVGAGTVEFIMD 326 Query: 307 PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 ++ E+NT + P +G + R+ + + Sbjct: 327 SKHNFCFMEMNTRLQVEH----PVTEMITGTDLVEWQLRIAAGEKIPLSQEEIT 376 >ref|NP_064551.2| (NM_020166) methylcrotonoyl-Coenzyme A carboxylase 1 (alpha); 3-methylcrotonyl-CoA carboxylase biotin-containing subunit [Homo sapiens] dbj|BAB14377.1| (AK023051) unnamed protein product [Homo sapiens] gb|AAG50245.1|AF310339_1 (AF310339) 3-methylcrotonyl-CoA carboxylase alpha subunit [Homo sapiens] gb|AAH04187.1|AAH04187 (BC004187) methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [Homo sapiens] gb|AAH04214.1|AAH04214 (BC004214) methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [Homo sapiens] Length = 725 Score = 268 bits (686), Expect = 5e-71 Identities = 56/354 (15%), Positives = 121/354 (33%), Gaps = 22/354 (6%) Query: 15 AEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSAT 74 + + + +NI + +R ++ + + V + Y + H+ + A Sbjct: 37 RTMKYTTATGRNITKVLIANRGEIACRVMRTAKKLGVQTVAVYSEADRNSMHVDMADEAY 96 Query: 75 SLAQVPG-KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVL 133 S+ P + + I P G L E+ + + + F+G Sbjct: 97 SIGPAPSQQSYLSMEKIIQVAKTSAAQAIHPGC-GFLSENMEFAELCKQEGIIFIGPPPS 155 Query: 134 ASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSV 193 A K +K ++ AG+ + ++ + E ++G P+ +K G Sbjct: 156 AIRDMGIKSTSKSIMAAAGVPVVEGYHG--EDQSDQCLKEHARRIGYPVMIKAVRGGGGK 213 Query: 194 GVSKVTSEEQYAIAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGE 246 G+ V SE+++ ++ A D +++E+ + R +E V G+ + A E Sbjct: 214 GMRIVRSEQEFQEQLESARREAKKSFNDDAMLIEKFVDTPRHVEVQVFGDHHGNAVYLFE 273 Query: 247 IVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT 306 K I+E I E+ K+ AV+A + + G V+ + Sbjct: 274 RD--CSVQRRHQKIIEE-----APAPGIKSEVRKKLGEAAVRAAKAVNYVGAGTVEFIMD 326 Query: 307 PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 ++ E+NT + P +G + R+ + + Sbjct: 327 SKHNFCFMEMNTRLQVEH----PVTEMITGTDLVEWQLRIAAGEKIPLSQEEIT 376 >dbj|BAA99407.1| (AB029826) 3-methylcrotonyl-CoA carboxylase biotin-containing subunit [Homo sapiens] gb|AAG53095.1|AF310972_1 (AF310972) 3-methylcrotonyl-CoA carboxylase alpha subunit [Homo sapiens] Length = 725 Score = 268 bits (685), Expect = 6e-71 Identities = 56/354 (15%), Positives = 121/354 (33%), Gaps = 22/354 (6%) Query: 15 AEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSAT 74 + + + +NI + +R ++ + + V + Y + H+ + A Sbjct: 37 RTMKYTTATGRNITKVLIANRGEIACRVMRTAKKLGVQTVAVYSEADRNSMHVDMADEAY 96 Query: 75 SLAQVPG-KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVL 133 S+ P + + I P G L E+ + + + F+G Sbjct: 97 SIGPAPSQQSYLSMEKIIQVAKTSAAQAIHPGC-GFLSENMEFAELCKQEGIIFIGPPPS 155 Query: 134 ASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSV 193 A K +K ++ AG+ + ++ + E ++G P+ +K G Sbjct: 156 AIRDMGIKSTSKSIMAAAGVPVVEGYHG--EDQSDQCLKEHARRIGYPVMIKAVRGGGGK 213 Query: 194 GVSKVTSEEQYAIAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGE 246 G+ V SE+++ ++ A D +++E+ + R +E V G+ + A E Sbjct: 214 GMRIVRSEQEFQEQLESARREAKKSFNDDAMLIEKFVDTPRHVEVQVFGDHHGNAVYLFE 273 Query: 247 IVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT 306 K I+E I E+ K+ AV+A + + G V+ + Sbjct: 274 RD--CSVQRRHQKIIEE-----APAPGIKSEVRKKLGEAAVRAAKAVNYVGAGTVEFIMD 326 Query: 307 PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 ++ E+NT + P +G + R+ + + Sbjct: 327 SKHNFCFMEMNTRLQVEH----PVTEMITGTDLVEWQLRIAAGEKIPLSQEEIT 376 >ref|NP_266497.1| (NC_002662) D-alanine-D-alanine ligase (EC 6.3.2.4) [Lactococcus lactis subsp. lactis] sp|Q9CIL5|DDL_LACLA D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAK04439.1|AE006271_2 (AE006271) D-alanine-D-alanine ligase (EC 6.3.2.4) [Lactococcus lactis subsp. lactis] Length = 349 Score = 268 bits (684), Expect = 9e-71 Identities = 126/361 (34%), Positives = 203/361 (55%), Gaps = 15/361 (4%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K + +++GG+SAE EVS+ SA++++ A++ SRF V I K G++ + Sbjct: 1 MSKETLILLYGGRSAEREVSVLSAESVMRAVNYSRFVVKTYFITKGGEFIKTQEFTDKPA 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 ++ + V+FP++HG +GEDGS+QG L Sbjct: 61 EEEKLLTNDLAESYP-------------KISPAAIYEKAAVVFPVLHGPMGEDGSIQGFL 107 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + L +VG ++L++++ MDK + K + G+ P++ EV KL Sbjct: 108 EILRLAYVGPNILSASSTMDKLLAKHVFEAVGVPQVPYVAAFADENQGEIAQEVVEKLEF 167 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+FVKPAN GSSVG+SKV A+ A+++D++V++EQG+ REIECAVLGN++ Sbjct: 168 PVFVKPANMGSSVGISKVDDLADLQPALSEAYKYDNRVVIEQGVDAREIECAVLGNNSDV 227 Query: 241 -ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 A+ GE+V +FY Y++KYID ++ +PA + ++ K++ A++AY+ + G++ Sbjct: 228 SATLPGEVVKDVEFYDYNSKYIDNK-IQMDIPAKVPADLAQKMQEYAIKAYKAVNGTGLS 286 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 R D F+T + V +NEIN +PGFT SMYP LW+ GL Y+DLI +L++LA E Sbjct: 287 RCDFFVTKDGNVYLNEINAIPGFTQWSMYPLLWENMGLSYSDLIEKLVDLAKETFETREN 346 Query: 360 L 360 Sbjct: 347 H 347 >emb|CAB64487.1| (AJ243059) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 267 bits (682), Expect = 1e-70 Identities = 131/359 (36%), Positives = 206/359 (56%), Gaps = 16/359 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A++ +RF V I + G + + + + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVNYNRFTVKTFFISQSGDFIKTQEFSQTPGQE 61 Query: 63 DPAHI-ALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 D A + V+FP++HG +GEDGS+QG L Sbjct: 62 DRLMTNATIDWDKQVVPS--------------AIYEEGAVVFPVLHGPMGEDGSVQGFLE 107 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 V +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P Sbjct: 108 VLKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYP 167 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 +F KP+N GSSVG+SK ++E+ A+ LAF++D +V+VEQG+ REIE +LGN + ++ Sbjct: 168 VFTKPSNMGSSVGISKSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKS 227 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 + GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G++R Sbjct: 228 TLPGEVVKDVAFYDYDAKYIDNK-ITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRC 286 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 D F T + E+ +NE+NT+PGFT SMYP LW G+ Y+DLI L++LA + A Sbjct: 287 DFFYTDKGEIFLNELNTMPGFTQWSMYPLLWDNMGISYSDLIEHLVDLAKQSFDKREAH 345 >sp|O54631|DDL_STRPN D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAC95435.1| (AF068901) D-Ala-D-Ala ligase [Streptococcus pneumoniae] Length = 347 Score = 265 bits (678), Expect = 4e-70 Identities = 132/359 (36%), Positives = 205/359 (56%), Gaps = 16/359 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A++ RF V I + G + + ++ + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSHAPGQE 61 Query: 63 DPAHI-ALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 D +A V+FP++HG +GEDGS+QG L Sbjct: 62 DRLMTNETIDWDKKVAPS--------------AIYEEGAVVFPVLHGPMGEDGSVQGFLE 107 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 V +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P Sbjct: 108 VLKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYP 167 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 +F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +LGN + ++ Sbjct: 168 VFTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKS 227 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 + GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G++R Sbjct: 228 TLPGEVVKDVAFYDYDAKYIDNK-ITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRC 286 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 D F T + E+ +NE+NT+PGFT SMYP LW G+ Y +LI RL++LA E A Sbjct: 287 DFFYTDKGEIFLNELNTMPGFTQWSMYPLLWDNMGISYPELIERLVDLAKESFDKREAH 345 >ref|NP_346110.1| (NC_003028) D-alanine--D-alanine ligase [Streptococcus pneumoniae TIGR4] gb|AAK75750.1| (AE007460) D-alanine--D-alanine ligase [Streptococcus pneumoniae TIGR4] Length = 347 Score = 265 bits (678), Expect = 4e-70 Identities = 133/359 (37%), Positives = 205/359 (57%), Gaps = 16/359 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A+D RF V I + G + + ++ + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQE 61 Query: 63 DPAHI-ALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 D +A V+FP++HG +GEDGS+QG L Sbjct: 62 DRLMTNETIDWDKKVAPS--------------AIYEEGAVVFPVLHGPMGEDGSVQGFLE 107 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 V +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P Sbjct: 108 VLKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYP 167 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 +F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +LGN + ++ Sbjct: 168 VFTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKS 227 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 + GE+V FY YD KYID + + +PA I+ ++ +R A A++ +G G++R Sbjct: 228 TLPGEVVKDVAFYDYDAKYIDNN-ITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRC 286 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 D F T + E+ +NE+NT+PGFT SMYP LW G+ Y LI RL++LA E A Sbjct: 287 DFFYTDKGEIFLNELNTMPGFTQWSMYPLLWDNMGISYPKLIERLVDLAKESFDKREAH 345 >emb|CAB64463.1| (AJ243053) D-ala,D-ala ligase [Streptococcus pneumoniae] emb|CAB64467.1| (AJ243054) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 265 bits (677), Expect = 5e-70 Identities = 132/359 (36%), Positives = 205/359 (56%), Gaps = 16/359 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A++ RF V I + G + ++ + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDSIKTQEFSHAPGQE 61 Query: 63 DPAHI-ALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 D +A V+FP++HG +GEDGS+QG L Sbjct: 62 DRLMTNETIDWDKKVAPS--------------AIYEEGAVVFPVLHGPMGEDGSVQGFLE 107 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 V +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P Sbjct: 108 VLKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYP 167 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 +F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +LGN + ++ Sbjct: 168 VFTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKS 227 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 + GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G++R Sbjct: 228 TLPGEVVKDVAFYDYDAKYIDNK-VTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRC 286 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 D F T + E+ +NE+NT+PGFT SMYP LW+ G+ Y +LI RL++LA E A Sbjct: 287 DFFYTDKGEIFLNELNTMPGFTQWSMYPLLWENMGISYPELIERLVDLAKESFDKREAH 345 >emb|CAB64459.1| (AJ243052) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 265 bits (677), Expect = 5e-70 Identities = 132/359 (36%), Positives = 204/359 (56%), Gaps = 16/359 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A++ RF V I + G + ++ + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDSIKTQEFSHAPGQE 61 Query: 63 DPAHI-ALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 D +A V+FP++HG +GEDGS+QG L Sbjct: 62 DRLMTNETIDWDKKVAPS--------------AIYEEGAVVFPVLHGPMGEDGSVQGFLE 107 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 V +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P Sbjct: 108 VLKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYP 167 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 +F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +LGN + ++ Sbjct: 168 VFTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKS 227 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 + GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G++R Sbjct: 228 TLPGEVVKDVAFYDYDAKYIDNK-VTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRC 286 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 D F T + E+ +NE+NT+PGFT SMYP LW G+ Y +LI RL++LA E A Sbjct: 287 DFFYTDKGEIFLNELNTMPGFTQWSMYPLLWDNMGISYPELIERLVDLAKESFDKREAH 345 >emb|CAB64475.1| (AJ243056) D-ala,D-ala ligase [Streptococcus pneumoniae] emb|CAB64479.1| (AJ243057) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 265 bits (677), Expect = 6e-70 Identities = 133/359 (37%), Positives = 205/359 (57%), Gaps = 16/359 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A+D RF V I + G + + ++ + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQE 61 Query: 63 DPAHI-ALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 D +A V+FP++HG +GEDGS+QG L Sbjct: 62 DRLMTNETIDWDKKVAPS--------------AIYEEGAVVFPVLHGPMGEDGSVQGFLE 107 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 V +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P Sbjct: 108 VLKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYP 167 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 +F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +LGN + ++ Sbjct: 168 VFTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKS 227 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 + GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G++R Sbjct: 228 TLPGEVVKDVAFYDYDAKYIDNK-ITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRC 286 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 D F T + E+ +NE+NT+PGFT SMYP LW G+ Y +LI RL++LA E A Sbjct: 287 DFFYTDKGEIFLNELNTMPGFTQWSMYPLLWDNMGISYPELIERLVDLAKESFDKREAH 345 >ref|NP_359108.1| (NC_003098) D-alanine-D-alanine ligase [Streptococcus pneumoniae R6] gb|AAL00319.1| (AE008520) D-alanine-D-alanine ligase [Streptococcus pneumoniae R6] Length = 347 Score = 264 bits (676), Expect = 7e-70 Identities = 133/359 (37%), Positives = 206/359 (57%), Gaps = 16/359 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A+D RF V I + G + + ++ + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQE 61 Query: 63 DPAHI-ALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 D +A V+FP++HG +GEDGS+QG L Sbjct: 62 DRLMTNETIDWDKKVAPS--------------AIYEEGAVVFPVLHGPMGEDGSVQGFLE 107 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 V +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P Sbjct: 108 VLKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYP 167 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 +F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +LGN + ++ Sbjct: 168 VFTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKS 227 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 + GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G++R Sbjct: 228 TLPGEVVKDVAFYDYDAKYIDNK-VTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRC 286 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 D F T + E+ +NE+NT+PGFT SMYP LW+ G+ Y +LI RL++LA E A Sbjct: 287 DFFYTDKGEIFLNELNTMPGFTQWSMYPLLWENMGISYPELIERLVDLAKESFDKREAH 345 >emb|CAB64471.1| (AJ243055) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 264 bits (676), Expect = 7e-70 Identities = 130/358 (36%), Positives = 202/358 (56%), Gaps = 14/358 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A++ RF V I + G + + + + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQE 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D V+FP++HG +GEDGS+QG L V Sbjct: 62 DRLMT-------------NATIDWDKKVAPSAIYEEEAVVFPVLHGPMGEDGSVQGFLEV 108 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+VG ++L+S+ MDK TKR+L G+ P++ + + AEVE KL P+ Sbjct: 109 LKMPYVGCNILSSSLAMDKITTKRVLESTGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPV 168 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 F KP+N GSSVG+SK ++E+ A+ LAF++D +V+VEQG+ REIE +LGN + +++ Sbjct: 169 FTKPSNMGSSVGISKSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKST 228 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G++R D Sbjct: 229 LPGEVVKDVAFYDYDAKYIDNK-ITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCD 287 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 F T + E+ +NE+NT+PGFT SMYP LW G+ Y +LI RL++LA E A Sbjct: 288 FFYTDKGEIFLNELNTMPGFTQWSMYPLLWDNMGISYPELIERLVDLAKESFDKREAH 345 >ref|NP_464381.1| (NC_003210) D-alanine--D-alanine ligase [Listeria monocytogenes EGD-e] emb|CAC98933.1| (AL591977) D-alanine--D-alanine ligase [Listeria monocytogenes] Length = 370 Score = 262 bits (670), Expect = 3e-69 Identities = 152/368 (41%), Positives = 225/368 (60%), Gaps = 7/368 (1%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K ++ +++GGKSAEHEVSLQ+A ++++A+D +F+ + I +G+W + L+ Sbjct: 2 KTKLILLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFV 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + + + K E + I + V+FP++HG GEDG++QG+ V Sbjct: 62 EQLRFSATDTIKLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEV 121 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPF---ITLTRANRHNISFAEVESKLG 179 N+P+VG+ VLAS+A MDK V K++ DAG+ P + N AE+E L Sbjct: 122 LNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVAEMEEVLT 181 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+FVKPAN GSSVG+SK T++++ A+ AF +D +V+VEQG+ REIE VLGND P Sbjct: 182 YPVFVKPANLGSSVGISKATNKKELVDAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTP 241 Query: 240 QASTCGEIVLT---SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 S GEI+ + FY Y KY D + A + +P + PEI ++++ A+QA+ L + Sbjct: 242 VCSVPGEILPEGAVATFYDYKAKYQDNNTALI-IPTEVDPEILEQMKEYAIQAFLGLDAS 300 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 G+ R D FLT +N++ +NE+NT+PGFT SMYP LWQ +GL Y LI RL++LA ERHAA Sbjct: 301 GLVRADFFLTEDNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLAKERHAA 360 Query: 357 DNALKTTM 364 NALK + Sbjct: 361 KNALKYKL 368 >sp|P25051|VANA_ENTFC VANCOMYCIN/TEICOPLANIN A-TYPE RESISTANCE PROTEIN VANA (VANA LIGASE) (D-ALANINE--D-LACTATE LIGASE) pir||CESOVM vancomycin resistance protein vanA - Enterococcus faecium plasmid pIP816 emb|CAA40215.1| (X56895) VANA ligase [Enterococcus faecium] gb|AAA65956.1| (M97297) vanA [Transposon Tn1546] Length = 343 Score = 262 bits (670), Expect = 4e-69 Identities = 128/352 (36%), Positives = 197/352 (55%), Gaps = 20/352 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I I+K +++ + +GI K G W + + Sbjct: 1 MNRIKVAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNG-QPLPTVDVIFPIVHGTLGEDGSLQGM 119 D+ S P K H L+ +N + VDV F +HG GEDGS+QG+ Sbjct: 61 NDN---------CYSAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +PFVG D+ +SA CMDK +T + ++AG+ F + + +R V + Sbjct: 112 FELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRP------VAATFT 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GV KV S ++ A++ A ++D K+++EQ + G E+ CAVLGN Sbjct: 166 YPVFVKPARSGSSFGVKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAA 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDG---AKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L + + E G A + VPA ++ E +I+ A + Y+ LGC Sbjct: 226 LVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETAKKIYKALGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 G+ARVD+FL +V+NE+NTLPGFT+ S YP++ A+G+ +LI RLI Sbjct: 286 RGLARVDMFLQDNGRIVLNEVNTLPGFTSYSRYPRMMAAAGIALPELIDRLI 337 >emb|CAB61227.1| (Y15704) vana protein [Bacillus circulans] Length = 343 Score = 261 bits (668), Expect = 6e-69 Identities = 127/352 (36%), Positives = 195/352 (55%), Gaps = 20/352 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I IDK +++ + +GI K G W + + Sbjct: 1 MNRIKVAILFGGCSEEHDVSVKSAIEIAANIDKEKYETLYIGITKSGVWKMCEKPCVEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNG-QPLPTVDVIFPIVHGTLGEDGSLQGM 119 D+ S P K H L+ +N + VDV F ++HG GEDGS+QG+ Sbjct: 61 NDN---------CCSAVLSPDKKMHGLLVKKNHEYEIDHVDVAFSVLHGKSGEDGSIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +PFVG D+ +SA CMDK +T + +AG+ F + ++ + Sbjct: 112 FELSGIPFVGCDIQSSAICMDKSLTYIVAENAGIATPEFWVFNKDDKP------MADTFT 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+FVKPA GSS GV KV ++ A++LA ++D K+++EQ + G E+ CAVLGN + Sbjct: 166 YPVFVKPARSGSSFGVKKVNGADELDAAIELAGQYDSKILIEQAVLGCEVGCAVLGNSSA 225 Query: 240 QAST-CGEIVLTSDFYAYDTKYIDEDG---AKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L + + E G A + VPA ++ E +I+ A + Y LGC Sbjct: 226 FVVGEVDQIRLQHGIFRIHQEAEPEKGSENAVITVPADLSAEERGRIQETAKKIYNALGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 G+ARVD+FL +V+NE+NTLPGFT+ S YP++ A G+ + +LI RLI Sbjct: 286 RGLARVDMFLQDNGRIVLNEVNTLPGFTSYSRYPRMMAAVGIAFPELIDRLI 337 >ref|NP_269512.1| (NC_002737) putative D-ala,D-ala ligase [Streptococcus pyogenes] [Streptococcus pyogenes M1 GAS] gb|AAK34233.1| (AE006579) putative D-ala,D-ala ligase [Streptococcus pyogenes M1 GAS] Length = 348 Score = 261 bits (668), Expect = 6e-69 Identities = 124/360 (34%), Positives = 199/360 (54%), Gaps = 14/360 (3%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K + +++GG+SAE EVS+ SA++++ A++ +F V I + GQ+ + + + Sbjct: 1 MSKQTLVLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQMGQFIKTQQFSEKPS 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + + + V+FP++HG +GEDGS+QG L Sbjct: 61 ESERLMT-------------NETIELTQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFL 107 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 V +P++G++V++S+ MDK TKR+L G+ + E ++L Sbjct: 108 EVLRMPYIGTNVMSSSIAMDKITTKRVLESIGIPQVAYTVYIDGQDLEACLVETLARLTF 167 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+FVKPAN GSSVG+SK ++ + A+ LA +D +V++EQG+ REIE +LGND + Sbjct: 168 PIFVKPANMGSSVGISKAQTKVELRKAIQLALTYDSRVLIEQGVVAREIEVGLLGNDKVK 227 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 ++ GE++ DFY Y KY+D + +PA + I ++R+ A A++ LG G++R Sbjct: 228 STLPGEVIKDVDFYDYQAKYVDNK-ITMAIPADVDQSIVTEMRSYAEVAFKALGGCGLSR 286 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 D FLT + +V +NE+NT+PGFT SMYP LW+ GL Y DLI L+ LA E + Sbjct: 287 CDFFLTQDGQVYLNELNTMPGFTQWSMYPLLWENMGLAYPDLIEELVTLAQEMFDQRESH 346 >emb|CAB63849.1| (AJ243051) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 261 bits (667), Expect = 8e-69 Identities = 131/359 (36%), Positives = 205/359 (56%), Gaps = 16/359 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A+D RF V I + G + + ++ + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQE 61 Query: 63 DPAHI-ALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 D +A V+FP++HG +GEDGS+QG L Sbjct: 62 DRLMTNETIDWDKKVAPS--------------AIYEEGAVVFPVLHGPMGEDGSVQGFLE 107 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 V +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P Sbjct: 108 VLKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYP 167 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 +F KP+N G SVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +LGN + ++ Sbjct: 168 VFTKPSNMGCSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKS 227 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 + GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G++R Sbjct: 228 TLPGEVVKDVAFYDYDAKYIDNK-VTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRC 286 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + F T + E+ +NE+NT+PGFT SMYP LW+ G+ Y +LI RL++LA E A Sbjct: 287 NFFYTDKGEIFLNELNTMPGFTQWSMYPLLWENMGISYPELIERLVDLAKESFDKREAH 345 >pdb|1E4E|A Chain A, D-Alanyl-D-Lacate Ligase Length = 343 Score = 260 bits (665), Expect = 1e-68 Identities = 127/352 (36%), Positives = 197/352 (55%), Gaps = 20/352 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I I+K +++ + +GI K G W + + Sbjct: 1 MNRIKVAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNG-QPLPTVDVIFPIVHGTLGEDGSLQGM 119 ++ S P K H L+ +N + VDV F +HG GEDGS+QG+ Sbjct: 61 NEN---------CYSAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +PFVG D+ +SA CMDK +T + ++AG+ F + + +R V + Sbjct: 112 FELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRP------VAATFT 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GV KV S ++ A++ A ++D K+++EQ + G E+ CAVLGN Sbjct: 166 YPVFVKPARSGSSFGVKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAA 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDG---AKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L + + E G A + VPA ++ E +I+ + Y+TLGC Sbjct: 226 LVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETVKKIYKTLGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 G+ARVD+FL +V+NE+NTLPGFT+ S YP++ A+G+ +LI RLI Sbjct: 286 RGLARVDMFLQDNGRIVLNEVNTLPGFTSYSRYPRMMAAAGISLPELIDRLI 337 >gb|AAF36803.1|AF155139_2 (AF155139) putative D-alanyl-D-alanine ligase VanE [Paenibacillus popilliae] Length = 343 Score = 259 bits (663), Expect = 3e-68 Identities = 123/352 (34%), Positives = 201/352 (56%), Gaps = 20/352 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +L++ I+FGG S EH+VS++SAK I + ID +++ + +GI + G W + + + Sbjct: 1 MNRLKIAILFGGCSEEHDVSVKSAKEIANNIDTEKYEPIYIGITRSGVWKMCEKPCMDWD 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQ-NGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 ++ S P K H L+ + G + +D +F ++HG GEDG++QG+ Sbjct: 61 NEN---------CRSAVLSPDKKMHGLLVMRNKGYQIQRIDAVFSVLHGKSGEDGAIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++++P+VG DV +SA CMDK +T + ++AG F+ L + + + L Sbjct: 112 FELSSIPYVGCDVQSSAVCMDKSLTYIVAQNAGFGTPEFLILNHGDIPDS------NTLT 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GV+KV +E++ A++ A ++D KV++EQ + G E+ CAVLGN + Sbjct: 166 YPVFVKPARSGSSFGVNKVNNEDELDAAIETARQYDSKVLIEQAVPGLEVGCAVLGNGTD 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDG---AKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L+ + + E G A V+VPA ++ E KI+ A Y+ LGC Sbjct: 226 LIVGEVDQISLSHGIFRIHQEDQPEKGSENAVVLVPANLSAEKRIKIQETAKAIYKALGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 G++RVD+FL +++NE+NTLPGFT S YP++ A+G+ + LI I Sbjct: 286 KGLSRVDMFLQENGRIILNEVNTLPGFTAYSRYPRMMAAAGMTLSGLIDHCI 337 >ref|NP_470190.1| (NC_003212) D-alanine--D-alanine ligase [Listeria innocua] emb|CAC96080.1| (AL596166) D-alanine--D-alanine ligase [Listeria innocua] Length = 370 Score = 259 bits (662), Expect = 3e-68 Identities = 152/368 (41%), Positives = 221/368 (59%), Gaps = 7/368 (1%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K ++ +++GGKSAEHEVSLQ+A ++++A+D +F+ + I +G+W + L+ Sbjct: 2 KTKLILLYGGKSAEHEVSLQTAFSVINALDLEKFEAEPIYITNEGEWVQGPLLSGKLDFV 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + + K E + I + V+FP++HG GEDG++QG+ V Sbjct: 62 EQLRFSATDRVKLATAESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEV 121 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPF---ITLTRANRHNISFAEVESKLG 179 N+P+VG+ VLAS+A MDK V K++ DAG+ P + N E+E L Sbjct: 122 LNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVTEMEEVLT 181 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+FVKPAN GSSVG+SK T++ + A+ AF +D +V+VEQG+ REIE VLGND P Sbjct: 182 YPVFVKPANLGSSVGISKATNKTELIEAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTP 241 Query: 240 QASTCGEIVLTSD---FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 S GEI+ FY Y KY D + A + +P + PEI ++++ AVQA+ L + Sbjct: 242 VCSVPGEILPEGAVAKFYDYKAKYQDNNTALI-IPTEVEPEILEQMKEYAVQAFLGLDAS 300 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 G+ R D FLT +N++ +NE+NT+PGFT SMYP LWQ +GL Y LI RL++LA ERHAA Sbjct: 301 GLVRADFFLTEDNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLAKERHAA 360 Query: 357 DNALKTTM 364 NALK + Sbjct: 361 KNALKYKL 368 >emb|CAB64483.1| (AJ243058) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 259 bits (661), Expect = 4e-68 Identities = 131/359 (36%), Positives = 205/359 (56%), Gaps = 16/359 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A++ RF V I + G + + + + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQE 61 Query: 63 DPAHI-ALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 D A +A V+FP++HG +GEDGS+QG L Sbjct: 62 DRLMTNATIDWDKQVAPS--------------AIYEEGAVVFPVLHGPMGEDGSVQGFLE 107 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 V +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P Sbjct: 108 VLKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDLTAKIAEVEEKLTYP 167 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 +F KP+N GSSVG+SK ++E+ A+ LAF++D +V+VEQG+ REIE +LGN + ++ Sbjct: 168 VFTKPSNMGSSVGISKSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKS 227 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 + GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G++R Sbjct: 228 TLPGEVVKDVAFYDYDAKYIDNK-ITMDIPAKISDDVVPIMRQNAKTAFRAIGGLGLSRC 286 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + F T + E+ +N++NT+PGFT SMYP LW + Y DLI RL++LA E A Sbjct: 287 NFFYTDKGEISLNKLNTMPGFTQWSMYPLLWDNMRISYPDLIERLVDLAKESFDKREAH 345 >pdb|1E4E|B Chain B, D-Alanyl-D-Lacate Ligase Length = 343 Score = 258 bits (660), Expect = 5e-68 Identities = 127/352 (36%), Positives = 197/352 (55%), Gaps = 20/352 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I I+K +++ + +GI K G W + + Sbjct: 1 MNRIKVAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNG-QPLPTVDVIFPIVHGTLGEDGSLQGM 119 ++ S P K H L+ +N + VDV F +HG GEDGS+QG+ Sbjct: 61 NEN---------CYSAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +PFVG D+ +SA CMDK +T + ++AG+ F + + +R V + Sbjct: 112 FELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRP------VAATFT 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GV KV S ++ A++ A ++D K+++EQ + G E+ CAVLGN Sbjct: 166 YPVFVKPARSGSSFGVKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAA 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDG---AKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L + + E G A + VPA ++ E +I+ + Y+TLGC Sbjct: 226 LVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETVKKIYKTLGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 G+ARVD+FL +V+NE+NTLPGFT+ S YP++ A+G+ +LI RLI Sbjct: 286 RGLARVDMFLQDRGRIVLNEVNTLPGFTSYSRYPRMMAAAGISLPELIDRLI 337 >gb|AAG37026.1|AF277571_3 (AF277571) D-alanine:D-lactate ligase [Enterococcus faecium] Length = 343 Score = 258 bits (660), Expect = 5e-68 Identities = 124/358 (34%), Positives = 202/358 (55%), Gaps = 20/358 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M KL++ ++FGG S EH+VS++SA + I+K ++ +GI K G W + D Sbjct: 1 MYKLKIAVLFGGCSEEHDVSVKSAMEVAANINKEKYQPFYIGITKSGAWKLCDKPCRDWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQN-GQPLPTVDVIFPIVHGTLGEDGSLQGM 119 P + H L+ ++ G VDV+ P++HG GEDG++QG+ Sbjct: 61 NYA---------GYPAVISPDRRIHGLLIQKDGGYESQPVDVVLPMIHGKFGEDGTIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L ++ +P+VG D+ +S CMDK + ++++AG+ + F L + + L Sbjct: 112 LELSGIPYVGCDIQSSVICMDKSLAYMVVKNAGIEVPGFRVLQKGDSLE------AETLS 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+FVKPA GSS GV+KV E+ AV A ++D K++VE+ + G E+ CA+LGN N Sbjct: 166 YPVFVKPARSGSSFGVNKVCRAEELQAAVTEAGKYDSKILVEEAVSGSEVGCAILGNGND 225 Query: 240 QAST-CGEIVLTSDFYAYDTKYIDEDG---AKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 + +I L F+ + E G A + VPAA+ E+ ++I+ A + Y+ LGC Sbjct: 226 LITGEVDQIELKHGFFKIHQEAQPEKGSENAVIRVPAALPDEVREQIQETAKKIYRVLGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+AR+D+FL + +V+NE+NT+PGFT+ S YP++ A+G ++++ RLI L+L R Sbjct: 286 RGLARIDLFLREDGSIVLNEVNTMPGFTSYSRYPRMMTAAGFTLSEILDRLIGLSLRR 343 >gb|AAF71281.1|AF253562_5 (AF253562) ligase [Enterococcus faecalis] Length = 349 Score = 258 bits (659), Expect = 7e-68 Identities = 133/352 (37%), Positives = 210/352 (58%), Gaps = 3/352 (0%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+ ++ ++FGG S E+EVSLQSA + + I+ ++FD++ +GI + G+W+ + Sbjct: 1 MQNKKIAVIFGGNSTEYEVSLQSASAVFENINTNKFDIIPIGITRSGEWYHYTGEKEKIL 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + + ++Q L A + + VD++FP++HG GE+G+LQG+ Sbjct: 61 NNTWFEDSKNLCPVVVSQNRSVK-GFLEIASDKYRIIKVDLVFPVLHGKNGENGTLQGIF 119 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 +A +P VG D L+SA CMDKD +L+ AG+++ +T R N + E+E+ L Sbjct: 120 ELAGIPVVGCDTLSSALCMDKDRAHKLVSLAGISVPKSVTFKRFNE-EAAMKEIEANLTY 178 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 PLF+KP GSS G++KV +++ A++LAFE D +VIVE+ I G E+ CAVLG D Sbjct: 179 PLFIKPVRAGSSFGITKVIEKQELDAAIELAFEHDTEVIVEETINGFEVGCAVLGIDELI 238 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 EI L+S F+ Y KY +K+ +PA I E +I+ AV Y+ LGC+G +R Sbjct: 239 VGRVDEIELSSGFFDYTEKYTL-KSSKIYMPARIDAEAEKRIQEAAVTIYKALGCSGFSR 297 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 VD+F TP E+V NE+NT+PGFT+ S YP + + GL ++ ++ +LI L +E Sbjct: 298 VDMFYTPSGEIVFNEVNTIPGFTSHSRYPNMMKGIGLSFSQMLDKLIGLYVE 349 >ref|NP_539980.1| (NC_003317) BIOTIN CARBOXYLASE [Brucella melitensis] gb|AAL52244.1| (AE009546) BIOTIN CARBOXYLASE [Brucella melitensis] Length = 459 Score = 257 bits (657), Expect = 1e-67 Identities = 62/348 (17%), Positives = 115/348 (32%), Gaps = 23/348 (6%) Query: 21 LQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP 80 Q + + +R ++ L + + + + + D H+ L + + P Sbjct: 3 GQQSAMFQKILIANRGEIALRVLRACKELGIKTVAVHSTADADAMHVRLADESVCIGPPP 62 Query: 81 G-KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACM 139 + + D I P +G L E+ +L ++ F+G Sbjct: 63 SRDSYLNIHQIVAACEITGADAIHPG-YGFLSENAKFAEILEAHDITFIGPTASHIRIMG 121 Query: 140 DKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVT 199 DK KR + G+ + P + A + ++G P+ +K + G G+ Sbjct: 122 DKIEAKRTAKRLGIPVVPGSDGGVTDEVE--AARIAKEIGYPVIIKASAGGGGRGMKVAR 179 Query: 200 SEEQYAIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSD 252 S E+ IA+ A D V +E+ ++ R IE V+G+ A GE Sbjct: 180 SAEELPIALATARSEAGAAFGDDAVYIEKYLEKPRHIEVQVMGDGAGNAVHLGERD--CS 237 Query: 253 FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVV 312 K +E + A+ E +KI I A LG G ++ + E Sbjct: 238 LQRRHQKVWEEGNS-----PALNAEAREKIGMICANACAELGYRGAGTIEFLY-EDGEFY 291 Query: 313 INEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 E+NT + P +G+ R+ + Sbjct: 292 FIEMNTRLQVEH----PVTEAITGIDLVHEQIRVAAGLGLSVKQKDIR 335 >ref|NP_485023.1| (NC_003272) D-alanyl-D-alanine ligase [Nostoc sp. PCC 7120] dbj|BAB72937.1| (AP003584) D-alanyl-D-alanine ligase [Nostoc sp. PCC 7120] Length = 364 Score = 256 bits (655), Expect = 2e-67 Identities = 158/363 (43%), Positives = 225/363 (61%), Gaps = 13/363 (3%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAI----DKSRFDVVLLGIDKQGQWHVSDASNYLL 59 +RVG++FGG+S EHEVS+ SA+ I A+ + S+++++ I K G+W +A +L Sbjct: 1 MRVGLLFGGRSGEHEVSISSARAIASALSAGENASKYEILPFYIHKDGRWLAGEAPQQVL 60 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 + P + S+ + + + L Q+ + VDV FPI+HG GEDG++QG+ Sbjct: 61 KSGAPL-LESSNSSPAENNLVNSQQQTLERWQSPSQVAEVDVWFPILHGPNGEDGTIQGL 119 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHN------ISFAE 173 L + PFVGS VL SA MDK K AGL + +TRA + E Sbjct: 120 LTLMQTPFVGSGVLGSALGMDKIAMKMAFEQAGLPQVKYKAVTRAQIWSNPCVFPKLCDE 179 Query: 174 VESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAV 233 +E+ LG P FVKPAN GSSVG+SKV S ++ A+D A +D ++I+E G+ RE+ECAV Sbjct: 180 IEASLGYPCFVKPANLGSSVGISKVRSRQELEDALDNAANYDRRIIIEAGVAAREVECAV 239 Query: 234 LGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 LGND PQAST GEI SDFY Y+TKY A +++PA I +I+ +I+ +A+QA+ + Sbjct: 240 LGNDQPQASTVGEITFNSDFYDYETKYTAGK-ADLLIPAIIPDDISRQIQNMALQAFAAV 298 Query: 294 GCAGMARVDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 AG+ARVD F EV+INEINTLPGFT SMYP+LW SG+ + +L+ +L++LA+E Sbjct: 299 DAAGLARVDFFYVEATGEVLINEINTLPGFTATSMYPQLWAHSGIPFPELVDKLVQLAIE 358 Query: 353 RHA 355 RH Sbjct: 359 RHN 361 >pir||T35363 D-alanine--D-alanine ligase (EC 6.3.2.4) A SC66T3.06 [similarity] - Streptomyces coelicolor emb|CAB45462.1| (AL079348) putative D-alanine:D-lactate ligase [Streptomyces coelicolor A3(2)] Length = 346 Score = 256 bits (655), Expect = 2e-67 Identities = 133/350 (38%), Positives = 194/350 (55%), Gaps = 20/350 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +L+VGIVFGG S EH VS++SA+ + +D ++ +GI K G W + D Sbjct: 1 MARLKVGIVFGGSSEEHAVSVKSAQEVARNLDTEKYQPFFVGITKDGAWRLCDGPGQDWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLP-TVDVIFPIVHGTLGEDGSLQGM 119 D + P + H L+ + GQ +DV+ P++HGTLGEDG+ QG+ Sbjct: 61 NGD---------CRPVVLSPDRSVHGLLVLEQGQYRSVRLDVVLPVLHGTLGEDGATQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L ++ +P+VG DV +SA CMDK + + R AG+ F T+T + +L Sbjct: 112 LELSGIPYVGCDVQSSALCMDKSLAYVVARSAGIATPDFWTVTGDETID------PGRLT 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN- 238 P+FVKPA GSS GVSKV E A AV+ A +D KV++E + G E+ CA+LGND Sbjct: 166 YPVFVKPARSGSSFGVSKVCRPEDLATAVESARRYDTKVLIEAAVVGSEVGCAILGNDPD 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDG---AKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 I L+ F+ + E+G + VVPA I E ++ A Y+ LGC Sbjct: 226 LIVGEVDRIALSHGFFRIHQEEQPENGSENSTPVVPADIPTEKRSLVQETAKAVYRALGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITR 345 G++RVD+FL + EVV+NE+NTLPG T+ S YP++ A+GL +++I R Sbjct: 286 RGLSRVDMFLKEDGEVVLNEVNTLPGMTSYSRYPRMMAAAGLPLSEVIDR 335 >sp|Q06893|VANB_ENTFC VANCOMYCIN B-TYPE RESISTANCE PROTEIN VANB (VANB LIGASE) (D-ALANINE--D-LACTATE LIGASE) gb|AAC43217.1| (U00456) D-alanine:D-alanine ligase-related protein induced by vancomycin [Enterococcus faecalis] gb|AAB05627.1| (U35369) D-Ala:D-Lac ligase [Enterococcus faecalis] prf||2007289A D-Ala lactate ligase [Enterococcus faecalis] Length = 342 Score = 256 bits (653), Expect = 3e-67 Identities = 130/358 (36%), Positives = 203/358 (56%), Gaps = 21/358 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K++V I+FGG S EH+VS++SA I I+ +FD +GI K G W + Sbjct: 1 MNKIKVAIIFGGCSEEHDVSVKSAIEIAANINTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNG-QPLPTVDVIFPIVHGTLGEDGSLQGM 119 AD + P + H L+ + +DV FP++HG GEDG++QG+ Sbjct: 61 AD----------SLPAIFSPDRKTHGLLVMKEREYETRRIDVAFPVLHGKCGEDGAIQGL 110 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 111 FELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIEKGDKPE------ARTLT 164 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GV+KV S E+ A++ A ++D K+++EQ I G E+ CAV+GN+ + Sbjct: 165 YPVFVKPARSGSSFGVTKVNSTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDD 224 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDG---AKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L+ + + E G A ++VPA I E ++++ A + Y+ LGC Sbjct: 225 LIVGEVDQIRLSHGIFRIHQENEPEKGSENAMIIVPADIPVEERNRVQETAKKVYRVLGC 284 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+ARVD+FL + +V+NE+NTLPGFT+ S YP++ A+G+ LI LI LA+ER Sbjct: 285 RGLARVDLFLQEDGGIVLNEVNTLPGFTSYSRYPRMAAAAGITLPALIDSLITLAIER 342 >ref|NP_442228.1| (NC_000911) biotin carboxylase [Synechocystis sp. PCC 6803] pir||S74380 biotin carboxylase accC - Synechocystis sp. (strain PCC 6803) dbj|BAA10298.1| (D64001) biotin carboxylase [Synechocystis sp. PCC 6803] Length = 448 Score = 256 bits (653), Expect = 3e-67 Identities = 53/344 (15%), Positives = 110/344 (31%), Gaps = 22/344 (6%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-H 83 + +R ++ L I + + + + H+ L + + P Sbjct: 1 MQFAKILIANRGEIALRIIHSCEELGIPTVAVHSTIDRHALHVQLANESVCIGPPPSNKS 60 Query: 84 EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + + I P +G L E+ + + F+G A A DK Sbjct: 61 YLNIPNIIAAALTRNATAIHPG-YGFLAENARFAEICADHQITFIGPSPEAITAMGDKST 119 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 K+ ++ +G+ P + ++ +++G P+ +K G G+ V E+ Sbjct: 120 AKKTMQKSGVPCVPGSPGLI--ESEATALKIAAEIGYPVIIKATAGGGGRGMRLVQEEKD 177 Query: 204 YAIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 + A + V +E+ I+ R IE +L + + GE Sbjct: 178 FLKLFHAAQGEAGAAFGNPGVYLEKFIEKPRHIEFQILADSHGNVVHLGERD--CSIQRR 235 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEI 316 K ++E + P + K+ AV+A +++ G V+ + E+ Sbjct: 236 HQKLLEE-----APSPFLTPHLRKKMGEAAVKAAKSINYVGAGTVEFLVDGNGNFYFMEM 290 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 NT + P +G R+ R + Sbjct: 291 NTRIQVEH----PVTEMITGYDLISEQIRIAMGEKLRFRQSDVE 330 >ref|NP_389369.1| (NC_000964) pyruvate carboxylase [Bacillus subtilis] pir||F69685 pyruvate carboxylase (EC 6.4.1.1) pycA [similarity] - Bacillus subtilis emb|CAB13359.1| (Z99111) pyruvate carboxylase [Bacillus subtilis] Length = 1148 Score = 256 bits (653), Expect = 3e-67 Identities = 57/344 (16%), Positives = 109/344 (31%), Gaps = 25/344 (7%) Query: 23 SAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ--VP 80 S ++I + +R ++ + + ++ + Y H A + + P Sbjct: 2 SQQSIQKVLVANRGEIAIRIFRACTELNIRTVAVYSKEDSGSYHRYKADEAYLVGEGKKP 61 Query: 81 GKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMD 140 + + VD I P +G L E+ + F+G D Sbjct: 62 IDAYLDIEGIIDIAKRNKVDAIHPG-YGFLSENIHFARRCEEEGIVFIGPKSEHLDMFGD 120 Query: 141 KDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTS 200 K + AG+ + P + + G P+ +K + G G+ V S Sbjct: 121 KVKAREQAEKAGIPVIPGSDG--PAETLEAVEQFGQANGYPIIIKASLGGGGRGMRIVRS 178 Query: 201 EEQYAIAVDL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDF 253 E + A + A + +V VE+ I + IE V+G+ E Sbjct: 179 ESEVKEAYERAKSEAKAAFGNDEVYVEKLIENPKHIEVQVIGDKQGNVVHLFERD--CSV 236 Query: 254 YAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVI 313 K I+ V +++PE+ D+I AV + + V+ + NE Sbjct: 237 QRRHQKVIE-----VAPSVSLSPELRDQICEAAVALAKNVNYINAGTVEFLV-ANNEFYF 290 Query: 314 NEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 E+N + +G+ L+ H+ Sbjct: 291 IEVNPRVQVEHT----ITEMITGVDIVQTQI-LVAQGHSLHSKK 329 >ref|NP_076133.1| (NM_023644) methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [Mus musculus] gb|AAG50244.1|AF310338_1 (AF310338) 3-methylcrotonyl-CoA carboxylase alpha subunit [Mus musculus] Length = 717 Score = 256 bits (653), Expect = 4e-67 Identities = 59/356 (16%), Positives = 120/356 (33%), Gaps = 22/356 (6%) Query: 13 KSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPS 72 K + +I + +R ++ I + V + Y + H+ + Sbjct: 31 KLRTMKYGTTPGGSITKVLIANRGEIACRVIRTAKKMGVQSVAVYSEADRNSMHVDMADE 90 Query: 73 ATSLAQVPGKHEHQ-LIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSD 131 A S+ P + + + I P +G L E+ + + + F+G Sbjct: 91 AYSIGPAPSQQSYLAMEKIIQVAKSSAAQAIHPG-YGFLSENMEFAELCKQEGIIFIGPP 149 Query: 132 VLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGS 191 A K +K ++ AG+ + ++ + E K+G P+ +K G Sbjct: 150 SSAIRDMGIKSTSKSIMAAAGVPVVEGYHG--KDQSDQCLREHAGKIGYPVMIKAVRGGG 207 Query: 192 SVGVSKVTSEEQYAIAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTC 244 G+ V SE ++ ++ A D +++E+ + R +E V G+ + A Sbjct: 208 GKGMRIVRSEREFQEQLESARREAKKSFNDDAMLIEKFVDTPRHVEVQVFGDHHGNAVYL 267 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 E K I+E I PE+ K+ AV+A + + G V+ Sbjct: 268 FERD--CSVQRRHQKIIEE-----APAPGINPEVRRKLGEAAVRAAKAVKYVGAGTVEFI 320 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + + E+NT + P +G + R+ + + Sbjct: 321 MDSRHNFYFMEMNTRLQVEH----PVTEMITGTDLVEWQLRIAAGEKIPLSQEEIP 372 >dbj|BAB25253.1| (AK007782) putative [Mus musculus] Length = 717 Score = 255 bits (652), Expect = 4e-67 Identities = 59/356 (16%), Positives = 120/356 (33%), Gaps = 22/356 (6%) Query: 13 KSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPS 72 K + +I + +R ++ I + V + Y + H+ + Sbjct: 31 KLRTMKYGTTPGGSITKVLIANRGEIACRVIRTAKKMGVQSVAVYSEADRNSMHVDMADE 90 Query: 73 ATSLAQVPGKHEHQ-LIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSD 131 A S+ P + + + I P +G L E+ + + + F+G Sbjct: 91 AYSIGPAPSQQSYLAMEKIIQVAKSSAAQAIHPG-YGFLSENMEFAELCKQEGIIFIGPP 149 Query: 132 VLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGS 191 A K +K ++ AG+ + ++ + E K+G P+ +K G Sbjct: 150 SSAIRDMGIKSTSKSIMAAAGVPVVEGYHG--KDQSDQCLREHAGKIGYPVMIKAVRGGG 207 Query: 192 SVGVSKVTSEEQYAIAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTC 244 G+ V SE ++ ++ A D +++E+ + R +E V G+ + A Sbjct: 208 GKGMRIVRSEREFQEQLESARREAKKSFNDDAMLIEKFVDTPRHVEVQVFGDHHGNAVYL 267 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 E K I+E I PE+ K+ AV+A + + G V+ Sbjct: 268 FERD--CSVQRRHQKIIEE-----APAPGINPEVRRKLGEAAVRAAKAVKYVGAGTVEFI 320 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + + E+NT + P +G + R+ + + Sbjct: 321 MDSRHNFYFMEMNTRLQVEH----PVTEMITGTDLVEWQLRIAAGEKIPLSQEEIP 372 >gb|AAB88214.1| (U59234) biotin carboxylase [Synechococcus sp. PCC 7942] Length = 453 Score = 254 bits (649), Expect = 9e-67 Identities = 55/340 (16%), Positives = 111/340 (32%), Gaps = 22/340 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKHEHQL 87 + +R ++ L + + + + + + H+ L A + + K + Sbjct: 5 KILIANRGEIALRILRTCEELGIGTIAVHSTVDRNALHVQLADEAVCIGEAASSKSYLNI 64 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + I P +G L E+ + +L F+G + A DK K Sbjct: 65 PNIIAAALTRNASAIHPG-YGFLAENARFAEICADHHLTFIGPSPDSIRAMGDKSTAKET 123 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 ++ G+ P + S A+V +++G P+ +K G G+ V Sbjct: 124 MQRVGVPTIPGSDGLLTD--VDSAAKVAAEIGYPVMIKATAGGGGRGMRLVREPADLEKL 181 Query: 208 V------DLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A + + +E+ I R +E +L + GE K Sbjct: 182 FLAAQGEAEAAFGNPGLYLEKFIDRPRHVEFQILADAYGNVVHLGERD--CSIQRRHQKL 239 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E A++ ++ K+ AV+ Q +G G V+ + E+NT Sbjct: 240 LEE-----APSPALSADLRQKMGDAAVKVAQAIGYIGAGTVEFLVDATGNFYFMEMNTRI 294 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + P +GL R+ + R + Sbjct: 295 QVEH----PVTEMITGLDLIAEQIRIAQGEALRFRQADIQ 330 >gb|AAF72363.1|AF192329_24 (AF192329) VanB [Enterococcus faecalis] Length = 342 Score = 253 bits (646), Expect = 2e-66 Identities = 128/358 (35%), Positives = 201/358 (55%), Gaps = 21/358 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I I+ +FD +GI K G W + Sbjct: 1 MNRIKVAIIFGGCSEEHDVSVKSAIEIAANINTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNG-QPLPTVDVIFPIVHGTLGEDGSLQGM 119 AD + P + H L+ + +DV FP++HG GEDG++QG+ Sbjct: 61 AD----------SLPAILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGL 110 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 111 FELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPE------AGALT 164 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GV+KV E+ A++ A ++D K+++EQ I G E+ CAV+GN+ + Sbjct: 165 YPVFVKPARSGSSFGVTKVNGTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDD 224 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDG---AKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L+ + + E G A + VPA I E ++++ A + Y+ LGC Sbjct: 225 LIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGC 284 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+ARVD+FL + +V+NE+NTLPGFT+ S YP++ A+G+ LI LI LAL+R Sbjct: 285 RGLARVDLFLQEDGGIVLNEVNTLPGFTSYSRYPRMVAAAGITLPALIDSLITLALKR 342 >gb|AAC23582.1| (U82965) D-alanine:D-alanine ligase-related protein [Streptomyces toyocaensis] Length = 340 Score = 253 bits (646), Expect = 2e-66 Identities = 123/347 (35%), Positives = 200/347 (57%), Gaps = 18/347 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +L++GIVFGG+S EH VS++SA+ + +D +++ +GI K G W + D + Sbjct: 1 MARLKIGIVFGGRSEEHPVSIKSAREVARNLDLEKYEPFYIGITKSGAWKLCDGPDAEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 D + L P + + + G +DV+ P++HG LGEDG++QG+L Sbjct: 61 DGDCRPVVLSPDSDVHGLLVLEQ--------GGCSTIRLDVVLPVLHGKLGEDGAMQGLL 112 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 ++ +P+VG D+ +SA CMDK + ++R+AG+ F T+ A+ ++ Sbjct: 113 ELSGIPYVGCDIQSSAVCMDKSLAYAVVRNAGIATPNFWTVA-ADETVD-----AARFTY 166 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-NP 239 P+FVKPA GSS GV+KV+ EE+ + AV+ A ++D KV++E+ + G EI CA+LG + Sbjct: 167 PVFVKPARSGSSFGVTKVSREEEMSSAVETARQYDSKVLIEEAVPGSEIGCAILGTGTDL 226 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 I L+ F+ + E G++ +VPA I +++ A Y+ LGC Sbjct: 227 VVGEVDRIALSHGFFRIHQEDSPETGSENSIAIVPADIPEASRLRVQEEAKAVYRVLGCR 286 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLI 343 G+ARVD+FL + EVV+NE+NTLPG T+ S YP++ A+GL +++I Sbjct: 287 GIARVDMFLKEDGEVVLNEVNTLPGLTSYSRYPRMMAAAGLPMSEVI 333 >gb|AAD42184.1|AF130997_5 (AF130997) D-alanine:D-lactate ligase [Enterococcus faecium] Length = 343 Score = 252 bits (644), Expect = 3e-66 Identities = 125/358 (34%), Positives = 205/358 (56%), Gaps = 20/358 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V ++FGG S EH VS++SA I ID ++ +GI K G W + + Sbjct: 1 MFRIKVAVLFGGCSEEHNVSIKSAMEIAANIDTKKYQPYYIGITKSGVWKMCEKPCLEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQN-GQPLPTVDVIFPIVHGTLGEDGSLQGM 119 + P + H L+ ++ G + VDV+FP++HG GEDGS+QG+ Sbjct: 61 QYA---------GDPVVFSPDRSTHGLLIQKDKGYEIQPVDVVFPMIHGKFGEDGSIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L ++ +P+VG D+ +S CMDK + ++++AG+ + F L +R Sbjct: 112 LELSGIPYVGCDIQSSVICMDKALAYTVVKNAGITVPGFRILQEGDRLET------EDFV 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN- 238 P+FVKPA GSS GV+KV E+ A++ A ++D K+++E+ + G E+ CA+LGN N Sbjct: 166 YPVFVKPARSGSSFGVNKVCKAEELQAAIEEARKYDSKILIEEAVTGSEVGCAILGNGND 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDG---AKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 A +I L F+ + E G A + VPAA+ E+ ++I+ A++ Y+ LGC Sbjct: 226 LMAGEVDQIELRHGFFKIHQEAQPEKGSENAVIRVPAALPDEVREQIQETAMKIYRILGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+AR+D+FL + +V+NE+NT+PGFT+ S YP++ A+G ++++ RLIEL+L R Sbjct: 286 RGLARIDLFLREDGCIVLNEVNTMPGFTSYSRYPRMMTAAGFTLSEILDRLIELSLRR 343 >ref|NP_484982.1| (NC_003272) biotin carboxylase [Nostoc sp. PCC 7120] sp|Q06862|ACCC_ANASP BIOTIN CARBOXYLASE (A SUBUNIT OF ACETYL-COA CARBOXYLASE (ACC) pir||A53311 biotin carboxylase (EC 6.3.4.14) - Anabaena sp. (strain PCC 7120) gb|AAB51770.1| (L14862) biotin carboxylase [Anabaena sp.] dbj|BAB72896.1| (AP003584) biotin carboxylase [Nostoc sp. PCC 7120] Length = 447 Score = 251 bits (642), Expect = 6e-66 Identities = 56/336 (16%), Positives = 115/336 (33%), Gaps = 24/336 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA-QVPGKHEHQL 87 + +R ++ L + + ++ + + + H+ L A + K + Sbjct: 5 KILIANRGEIALRILRACEEMGIATIAVHSTVDRNALHVQLADEAVCIGEPASAKSYLNI 64 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + I P +G L E+ + ++ F+G A DK K Sbjct: 65 PNIIAAALTRNASAIHPG-YGFLSENAKFAEICADHHIAFIGPTPEAIRLMGDKSTAKET 123 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 ++ AG+ P E+ +G P+ +K G G+ V S +++ Sbjct: 124 MQKAGVPTVPGSEGLV--ETEQEGLELAKDIGYPVMIKATAGGGGRGMRLVRSPDEFVKL 181 Query: 208 V------DLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A + V +E+ I+ R IE +L ++ GE + K Sbjct: 182 FLAAQGEAGAAFGNAGVYIEKFIERPRHIEFQILADNYGNVIHLGERD--CSIQRRNQKL 239 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E A+ ++ +K+ AV+A Q + G ++ L + E+NT Sbjct: 240 LEE-----APSPALDSDLREKMGQAAVKAAQFINYTGAGTIEFLLDRSGQFYFMEMNTRI 294 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 + P +G+ L+ ++ ER Sbjct: 295 QVEH----PVTEMVTGVDL--LVEQIRIAQGERLRL 324 >ref|NP_103309.1| (NC_002678) D-alanine-D-alanine ligase A [Mesorhizobium loti] dbj|BAB49095.1| (AP002998) D-alanine-D-alanine ligase A [Mesorhizobium loti] Length = 357 Score = 251 bits (642), Expect = 7e-66 Identities = 159/360 (44%), Positives = 227/360 (62%), Gaps = 9/360 (2%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 EK RV I++GG+SAEH+VS SA N++ AID++R++VV + I + G+W + + Sbjct: 3 EKTRVAILYGGRSAEHDVSRLSAANVLKAIDRTRYEVVPIAISRDGRWRLQPS---SEAG 59 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 D A + +A +PG + +NG+ VDV+FP++HG GEDGS+QG Sbjct: 60 ADGAGAQVPEDGVEVALLPGGKGRLVALTKNGEQPDPVDVVFPVLHGPFGEDGSVQGYAE 119 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 VA++ +VG +LASAA MDKDV KRLLR+AGL +A +T+ + + SF E+ LGLP Sbjct: 120 VADVAYVGCGILASAAAMDKDVAKRLLREAGLAVARSVTVLKGD--VGSFQEIAGALGLP 177 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL--GNDNP 239 F KPA QGSS GVSKV + + AV+ A +D K ++E+ + GREIEC+VL + + Sbjct: 178 FFAKPARQGSSFGVSKVHDRDGFEQAVETALRYDSKALIEEFVDGREIECSVLERADGSL 237 Query: 240 QASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 S GEI+ FY Y+ KY D +GA V VPA + ++ + +A +A++ LGC Sbjct: 238 TVSPPGEIIPADKHGFYTYEAKYFDAEGAVVKVPADVPADVVARTSEMAARAFRALGCEA 297 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 MARVD FL + +++NE+NTLPGFT+ISMY K A+G+GY+ +I LIE AL RH A Sbjct: 298 MARVDFFLRADGSLLVNEVNTLPGFTDISMYAKALAAAGIGYSKVIDVLIEHALARHRAR 357 >ref|NP_294085.1| (NC_001263) D-alanine--D-alanine ligase [Deinococcus radiodurans] pir||D75529 D-alanine--D-alanine ligase - Deinococcus radiodurans (strain R1) gb|AAF09941.1|AE001896_6 (AE001896) D-alanine--D-alanine ligase [Deinococcus radiodurans] Length = 339 Score = 251 bits (641), Expect = 7e-66 Identities = 148/355 (41%), Positives = 217/355 (60%), Gaps = 24/355 (6%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K R+ ++ GG+S EHEVSL+SA++++ A+ + +FDV + I KQG+W Sbjct: 2 KRRILLLAGGQSGEHEVSLRSARSVLAALPRDQFDVTPVVISKQGRWL------------ 49 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + + + D +FP++HG +GEDG++QG+L + Sbjct: 50 ------PPTETQKALETGVSSQGGDLMLHRAAAAEGYDAVFPLLHGPMGEDGTIQGLLTL 103 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN--RHNISFAEVESKLGL 180 A +PFVGS VL SA MDK +TK++L AG+ + R + + ++LG Sbjct: 104 AGIPFVGSGVLGSAVSMDKVMTKQVLDSAGIPQVAWRLAVRREWQQTPDAVRARAAELGY 163 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIK--GREIECAVLGNDN 238 PLFVKPAN GSSVG+SKV S E+ A+ LAF D +VI+E RE+E +LGND Sbjct: 164 PLFVKPANLGSSVGISKVGSPEELDAALTLAFGLDRRVILEAMTPHKPREVEVGILGNDV 223 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 P AS GE+ +DFY Y+TKY + A++ +PA I PE++++IR A++A++ L CAG+ Sbjct: 224 PVASPVGELSFDADFYDYETKYTEGR-AEMHIPARIPPEVSERIRTEALRAFRALDCAGL 282 Query: 299 ARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 ARVD F E E+ +NE+NT+PGFT SMYPKL++A+GL Y++L+TRL+ELALE Sbjct: 283 ARVDFFYVEETGELFLNEVNTMPGFTTTSMYPKLFEAAGLSYSELVTRLVELALE 337 >sp|Q47758|DDL_ENTFA D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) Length = 348 Score = 251 bits (641), Expect = 8e-66 Identities = 138/355 (38%), Positives = 213/355 (59%), Gaps = 10/355 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ +++GG+S EH+VS+ SA ++++AI + V L+ I K GQW + + Sbjct: 1 MKIILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKE 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 H+ + + GK + ++FP++HG GEDG++QG + Sbjct: 61 VLHLTWAQTPEETGEFSGK------RISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETI 114 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN---RHNISFAEVESKLGL 180 N+P+VG+ VLAS MDK +TK LL+ G+ PF+ + R++ F + E L Sbjct: 115 NMPYVGAGVLASVNAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIY 174 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+FVKPAN GSSVG+SKV + E+ A++ AF +D + IVEQGI+ REIE A+LGN++ + Sbjct: 175 PVFVKPANMGSSVGISKVENREELQEALEEAFRYDARAIVEQGIEAREIEVAILGNEDVR 234 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 + GE+V FY YD KYI+ ++ +PA + E+ + + A +AY L +G++R Sbjct: 235 TTLPGEVVKDVAFYDYDAKYINN-TIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSR 293 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 D FLT +NE+ +NE+NT+PGFT+ SMYP LW+ GL Y+DLI LI+LAL R Sbjct: 294 CDFFLTSKNELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLALNRFK 348 >sp|P29753|VANC_ENTGA VANCOMYCIN C-TYPE RESISTANCE PROTEIN VANC (VANC LIGASE) pir||JN0249 vancomycin resistance protein vanC - Enterococcus gallinarum gb|AAA24786.1| (AF162694) D-alanine-D-alanine ligase-related protein [Enterococcus gallinarum] Length = 343 Score = 251 bits (640), Expect = 1e-65 Identities = 116/352 (32%), Positives = 179/352 (49%), Gaps = 10/352 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 ++ ++FGG S E+ VSL SA +++ AID +++V+ +GI W+ + + D Sbjct: 2 KKIAVLFGGNSPEYSVSLTSAASVIQAIDPLKYEVMTIGIAPTMDWYWYQGNLANVRNDT 61 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 G+ DV+FP++HG GEDG +QG+L + Sbjct: 62 WL----EDHKNCHQLTFSSQ-----GFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELM 112 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 NLP+VG V ASA CM+K + +L G+ AP + L+R + G P+F Sbjct: 113 NLPYVGCHVAASALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIF 172 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 +KP GSS G++KVT + A+ AF + V++++ I G EI C +LGN+ Sbjct: 173 IKPNEAGSSKGITKVTDKTALQSALTTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGA 232 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 C I L F+ ++ KY A + VPA + + +I+ A Y+ LG G+AR+D Sbjct: 233 CDAISLVDGFFDFEEKYQL-ISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDF 291 Query: 304 FLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 F+T + + +NEINT+PGFT S YP + GL Y L+ +LI LA E Sbjct: 292 FVTNQGAIYLNEINTMPGFTGHSRYPAMMAEVGLSYEILVEQLIALAEEDKR 343 >gb|AAD41882.1|AF153050_3 (AF153050) D-alanine:D-lactate ligase [Enterococcus faecium] Length = 343 Score = 250 bits (639), Expect = 1e-65 Identities = 127/358 (35%), Positives = 205/358 (56%), Gaps = 20/358 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K++V ++FGG S EH VS++SA I ID ++ +GI K G W + + Sbjct: 1 MFKIKVAVLFGGCSEEHNVSIKSAMEIAANIDTKKYQPYYIGITKSGVWKMCEKPCLGWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQN-GQPLPTVDVIFPIVHGTLGEDGSLQGM 119 + P + H L+ ++ G + VDV+FP++HG GEDGS+QG+ Sbjct: 61 QYA---------GDPVVFSPDRSTHGLLIQKDTGYEIQPVDVVFPMIHGKFGEDGSIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L ++ +P+VG D+ +S CMDK + ++++AG+ + F L +R L Sbjct: 112 LELSGIPYVGCDIQSSVICMDKALAYTVVKNAGIAVPGFRILQEGDRLET------EDLV 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN- 238 P+FVKPA GSS GV+KV E+ A+ A ++D K+++E+ + G E+ CA+LGN+N Sbjct: 166 YPVFVKPARSGSSFGVNKVCKAEELQAAIREARKYDSKILIEEAVTGSEVGCAILGNEND 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDG---AKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 A +I L F+ + E G A + VPAA+ E+ ++IR A++ Y+ LGC Sbjct: 226 LMAGEVDQIELRHGFFKIHQEAQPEKGSENAVIRVPAALPDEVRERIRKTAMKIYRILGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+AR+D+FL + +V+NE+NT+PGFT+ S YP++ A+G ++++ RLIE +L R Sbjct: 286 RGLARIDLFLREDGCIVLNEVNTMPGFTSYSRYPRMMTAAGFTLSEILDRLIEFSLRR 343 >emb|CAB05883.1| (Z83305) D-alanine:D-alanine ligase-related protein [Enterococcus faecium] gb|AAB39760.1| (U81452) D-alanine:D-alanine ligase-related protein [Enterococcus faecium] gb|AAG34691.1|AF310956_6 (AF310956) D-alanine:D-lactate ligase [Enterococcus faecium] Length = 342 Score = 249 bits (637), Expect = 2e-65 Identities = 128/358 (35%), Positives = 201/358 (55%), Gaps = 21/358 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I ID +FD +GI K G W + Sbjct: 1 MNRIKVAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNG-QPLPTVDVIFPIVHGTLGEDGSLQGM 119 AD + P + H L+ + +DV FP++HG GEDG++QG+ Sbjct: 61 AD----------SLPAILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGL 110 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 111 FVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPE------AGALT 164 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS G++KV E+ A++ A ++D K+++EQ I G E+ CAV+GN+ + Sbjct: 165 YPVFVKPARSGSSFGLTKVNGTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDD 224 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDG---AKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L+ + + E G A + VPA I E ++++ A + Y+ LGC Sbjct: 225 LIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGC 284 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+ARVD+FL + +V+NE+NTLPGFT+ S YP++ A+G+ LI LI LAL+R Sbjct: 285 RGLARVDLFLQEDGGIVLNEVNTLPGFTSYSRYPRMMAAAGITLPALIDSLITLALKR 342 >ref|NP_243491.1| (NC_002570) pyruvate carboxylase [Bacillus halodurans] dbj|BAB06344.1| (AP001516) pyruvate carboxylase [Bacillus halodurans] Length = 1150 Score = 249 bits (637), Expect = 3e-65 Identities = 53/326 (16%), Positives = 102/326 (31%), Gaps = 23/326 (7%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ--VPGK 82 KNI + +R ++ + + H+ + Y H A + + P + Sbjct: 5 KNIKKVLVANRGEIAIRIFRACTELHIRTVAIYSKEDTGAYHRYKADEAYLVGEGKKPIE 64 Query: 83 HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKD 142 + VD I P +G L E+ + F+G ++ DK Sbjct: 65 AYLDIEGIIEIAKRHGVDAIHPG-YGFLSENIEFAKRCHEEGIIFIGPELEHLVMFGDKV 123 Query: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEE 202 + A L + P + K G P +K A G G+ V SE Sbjct: 124 QAREQAIKANLPVIPGSDGPVS--SLEDVKAFADKHGYPFIIKAALGGGGRGMRIVRSEN 181 Query: 203 QYAIAVDL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYA 255 + + A + +V VE+ I + IE +L + + E Sbjct: 182 DVQESYERAKSEAKAAFGNDEVYVEKFIENPKHIEVQILADKHGNTLHLYERD--CSVQR 239 Query: 256 YDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINE 315 K ++ V +++ ++ ++I AVQ + + V+ + E E Sbjct: 240 RHQKVVE-----VAPSVSLSEDVRERICQAAVQLAENVNYVNAGTVEFLVDREGNFYFIE 294 Query: 316 INTLPGFTNISMYPKLWQASGLGYTD 341 +N + +G+ Sbjct: 295 VNPRIQVEHT----ITEMVTGIDIVQ 316 >gb|AAG34685.1|AF310955_1 (AF310955) ligase VanB2 [Enterococcus faecalis] gb|AAG34693.1|AF310957_1 (AF310957) ligase VanB2 [Enterococcus faecium] Length = 342 Score = 249 bits (636), Expect = 3e-65 Identities = 127/358 (35%), Positives = 200/358 (55%), Gaps = 21/358 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V +FGG S EH+VS++SA I ID +FD +GI K G W + Sbjct: 1 MNRIKVATIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNG-QPLPTVDVIFPIVHGTLGEDGSLQGM 119 AD + P + H L+ + +DV FP++HG GEDG++QG+ Sbjct: 61 AD----------SLPAILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGL 110 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 111 FVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPE------AGALT 164 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GV+KV E+ A++ A ++D K+++EQ I G E+ CAV+GN+ + Sbjct: 165 YPVFVKPARSGSSFGVTKVNGPEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDD 224 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDG---AKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L+ + + E G A + VPA I E ++++ A + Y+ LGC Sbjct: 225 LIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGC 284 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+ARVD+FL + +V+NE+NT+PGFT+ S YP++ A+G+ LI LI LAL+R Sbjct: 285 RGLARVDLFLQEDGGIVLNEVNTMPGFTSYSRYPRMVAAAGITLPALIDSLITLALKR 342 >gb|AAC43218.1| (U00457) D-alanine:D-alanine ligase-related protein [Enterococcus faecalis] prf||2007289B D-Ala D-Ala ligase [Enterococcus faecalis] Length = 348 Score = 249 bits (636), Expect = 3e-65 Identities = 138/354 (38%), Positives = 212/354 (58%), Gaps = 10/354 (2%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 ++ +++GG+S EH+VS+ SA ++++AI + V L+ I K GQW + + Sbjct: 2 KIILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEV 61 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 H+ + + GK + ++FP++HG GEDG++QG + N Sbjct: 62 LHLTWAQTPEETGEFSGK------RISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETIN 115 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN---RHNISFAEVESKLGLP 181 +P+VG+ VLAS MDK +TK LL+ G+ PF+ + R++ F + E L P Sbjct: 116 MPYVGAGVLASVNAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYP 175 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 +FVKPAN GSSVG+SKV + E+ A++ AF +D + IVEQGI+ REIE A+LGN++ + Sbjct: 176 VFVKPANMGSSVGISKVENREELQEALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRT 235 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 + GE+V FY YD KYI+ ++ +PA + E+ + + A +AY L +G++R Sbjct: 236 TLPGEVVKDVAFYDYDAKYINN-TIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRC 294 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 D FLT +NE+ +NE+NT+PGFT+ SMYP LW+ GL Y+DLI LI+LAL R Sbjct: 295 DFFLTSKNELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLALNRFK 348 >ref|NP_349497.1| (NC_003030) D-alanine-D-alanine ligase [Clostridium acetobutylicum] gb|AAK80837.1|AE007787_3 (AE007787) D-alanine-D-alanine ligase [Clostridium acetobutylicum] Length = 343 Score = 249 bits (635), Expect = 4e-65 Identities = 139/358 (38%), Positives = 217/358 (59%), Gaps = 20/358 (5%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K +V I+FGG+S EHEVS SA +++ ID S++D+ +GI K+G+W S + Sbjct: 2 KKKVAILFGGQSTEHEVSRVSAASVLRNIDTSKYDLFPIGITKKGEWFEYTGSADKIENG 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + S A + K VDV+FP++HG GEDG++QG+ ++ Sbjct: 62 EWEKDEFYKSPNGQAILFNK---------------EVDVVFPVMHGLYGEDGTIQGLCKL 106 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR---HNISFAEVESKLG 179 +P VG VL+S+ CMDK TK +L + A ++ + E+E+KLG Sbjct: 107 VGVPCVGPSVLSSSVCMDKVYTKYVLEHFNIKQADYVVVHAHEYKTSKEEIIKEIENKLG 166 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 +F+KP+N GSSVG++K + ++ ++ A ++D K++VE+ + REIE AVLGN+ P Sbjct: 167 YAVFIKPSNSGSSVGITKAHNRKELEAGLEEAMKYDRKILVEEALNAREIEVAVLGNEEP 226 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 +A+ GEIV +FY Y+ KY + +K+++PA ++ E +KI+ IA++ Y+ L C+GM+ Sbjct: 227 KAAIPGEIVPAKEFYDYEAKY-ENAASKLLIPANLSNENLEKIKNIAIEVYKALDCSGMS 285 Query: 300 RVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 RVD + + E+ +NE+NT+PGFT+ISMYPKLW A+G Y+ LI LIELA R+ A Sbjct: 286 RVDFLVDKDTTEMYLNEVNTIPGFTSISMYPKLWAAAGKDYSKLIDELIELAASRNNA 343 >ref|NP_102052.1| (NC_002678) biotin carboxylase [Mesorhizobium loti] dbj|BAB47838.1| (AP002994) biotin carboxylase [Mesorhizobium loti] Length = 447 Score = 247 bits (631), Expect = 1e-64 Identities = 57/342 (16%), Positives = 110/342 (31%), Gaps = 23/342 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 + +R ++ L + + + + D H+ L + + P Sbjct: 1 MFQKILIANRGEIALRVLRACKELGIQTVVVHSTADADAMHVRLADESVCIGPPPSRDSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + D + P +G L E+ +L N+ F+G DK Sbjct: 61 LNIHQIVAACEITGADAVHPG-YGFLSENAKFADILAAHNITFIGPSGDHIRIMGDKIEA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 KR + G+ + P + +++G P+ +K + G G+ SE Sbjct: 120 KRTAKRLGIPVVPGSDGAVTEE--KEAKRIAAEIGYPVIIKASAGGGGRGMKVAHSEADL 177 Query: 205 AIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 +A+ A D V +E+ ++ R IE V G+ + GE Sbjct: 178 EVALQTARSEAGAAFGDDAVYIEKYLQKPRHIEVQVFGDGFGRGVHFGERD--CSLQRRH 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K +E + A+ E +I I +A LG +G ++ E E+N Sbjct: 236 QKVWEEANS-----PALNAEERSRIGGICAKAIADLGYSGAGTIEFLY-ENGEFYFIEMN 289 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 T + P +G+ R+ ++ Sbjct: 290 TRLQVEH----PVTEAITGIDLVHEQIRVASGGGLSVKQEDI 327 >gb|AAG34684.1|AF310954_1 (AF310954) ligase VanB2 [Enterococcus faecium] Length = 342 Score = 246 bits (629), Expect = 2e-64 Identities = 127/358 (35%), Positives = 200/358 (55%), Gaps = 21/358 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V +FGG S EH+VS++SA I ID +FD +GI K G W + Sbjct: 1 MNRIKVATIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNG-QPLPTVDVIFPIVHGTLGEDGSLQGM 119 AD + P + H L+ + +DV FP++HG GEDG++QG+ Sbjct: 61 AD----------SLPAILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGL 110 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 111 FVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPE------AGALT 164 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS G++KV E+ A++ A ++D K+++EQ I G E+ CAV+GN+ + Sbjct: 165 YPVFVKPARAGSSFGLTKVNGTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDD 224 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDG---AKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L+ + + E G A + VPA I E ++++ A + Y+ LGC Sbjct: 225 LIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGC 284 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+ARVD+FL + +V+NE+NTLPGFT+ S YP++ A+G+ LI LI LAL+R Sbjct: 285 RGLARVDLFLQEDGGIVLNEVNTLPGFTSYSRYPRMMAAAGITLPALIDSLITLALKR 342 >gb|AAG34683.1|AF310953_1 (AF310953) ligase VanB2 [Enterococcus faecium] Length = 342 Score = 246 bits (628), Expect = 3e-64 Identities = 126/358 (35%), Positives = 200/358 (55%), Gaps = 21/358 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V +FGG S EH+VS++SA I ID +FD +GI K G W + Sbjct: 1 MNRIKVATIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNG-QPLPTVDVIFPIVHGTLGEDGSLQGM 119 AD + P + H L+ + +DV FP++HG GEDG++QG+ Sbjct: 61 AD----------SLPAILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGL 110 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 111 FVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPE------AGALT 164 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS G++KV E+ A++ A ++D K+++EQ I G E+ CAV+GN+ + Sbjct: 165 YPVFVKPARSGSSFGLTKVNGTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDD 224 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDG---AKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L+ + + E G A + VPA I E ++++ A + Y+ LGC Sbjct: 225 LIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGC 284 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+ARVD+FL + +V+NE+NTLPGFT+ S YP++ A+G+ +I LI LAL+R Sbjct: 285 RGLARVDLFLQEDGGIVLNEVNTLPGFTSYSRYPRMMAAAGITLPAMIDSLITLALKR 342 >gb|AAD51060.1|AF175293_5 (AF175293) D-alanine:D-lactate ligase [Enterococcus faecium] Length = 343 Score = 246 bits (627), Expect = 4e-64 Identities = 125/358 (34%), Positives = 203/358 (55%), Gaps = 20/358 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V ++FGG S EH VS++SA I ID ++ +GI K G W + + Sbjct: 1 MFRIKVAVLFGGCSEEHNVSIKSAMEIAANIDTKKYQPYYIGITKSGVWKMCEKPCLEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQN-GQPLPTVDVIFPIVHGTLGEDGSLQGM 119 + P + H L+ ++ G + VDV P++HG GEDGS+QG+ Sbjct: 61 QYA---------GDPVVFSPDRSTHGLLIQKDTGYEIQPVDVGLPMIHGKFGEDGSIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L ++ +P+VG D+ +S CMDK + ++++AG+ + F L +R Sbjct: 112 LELSGIPYVGCDIQSSVTCMDKALAYTVVKNAGIAVPGFRILQEGDRLET------EDFV 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN- 238 P+FVKPA GSS GV+KV E+ A++ A ++D K+++E+ + G E+ CA+LGN N Sbjct: 166 YPVFVKPARSGSSFGVNKVCKAEELQAAIEDARKYDSKILIEEAVTGSEVGCAILGNGND 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDG---AKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 A +I L F+ + E G A + VPAA+ E+ ++I+ A++ Y+ LGC Sbjct: 226 LMAGEVDQIELRHGFFKIHQEAQPEKGSENAVIRVPAALPDEVIERIQKTAMKIYRILGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+AR+D+FL + +V+NE+NT+PGFT+ S YP++ A+G T+++ RLIEL+L R Sbjct: 286 RGLARIDLFLREDGCIVLNEVNTMPGFTSYSRYPRMMTAAGFTLTEILDRLIELSLRR 343 >dbj|BAA12072.1| (D83706) pyruvate carboxylase [Geobacillus stearothermophilus] Length = 1147 Score = 244 bits (624), Expect = 7e-64 Identities = 53/346 (15%), Positives = 105/346 (30%), Gaps = 24/346 (6%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ--VPGK 82 + I + +R ++ + + + + Y H A + + P + Sbjct: 4 RRIRKVLVANRGEIAIRVFRACTELGIRTVAIYSKEDVGSYHRYKADEAYLVGEGKKPIE 63 Query: 83 HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKD 142 + VD I P +G E+ R + F G + DK Sbjct: 64 AYLDIEGIIEIAKAHDVDAIHPG-YGFFSENIQFAKRCREEGIIFFGPNENHLDMFGDKV 122 Query: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEE 202 + +AG+ + P G P+ +K A G G+ V S+ Sbjct: 123 KARHAAVNAGIPVIPGSDGPV--DGLEDVVAFAEAHGYPIIIKAALGGGGRGMRFVRSKS 180 Query: 203 QYAIAVDL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYA 255 + A + A +V VE+ I + IE +LG+ E Sbjct: 181 EVKEAFERAKSEAKAAFGSDEVYVEKLIENPKHIEVQILGDYEGNIVHLYERD--CSVQR 238 Query: 256 YDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINE 315 K ++ V +++ E+ +I AVQ +++G V+ ++ + E E Sbjct: 239 RHQKVVE-----VAPSVSLSDELRQRICEAAVQLMRSVGYVNAGTVEFLVSGD-EFYFIE 292 Query: 316 INTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALK 361 +N + +G+ + + K Sbjct: 293 VNPRIQVEHT----ITEMITGIDIVQSQILIADGCSLHSHEVGIPK 334 >pir||T02431 acetyl-CoA carboxylase (EC 6.4.1.2), biotin carboxylase - common tobacco gb|AAC41659.1| (L38260) biotin carboxylase subunit [Nicotiana tabacum] prf||2118337A Ac-CoA carboxylase:SUBUNIT=biotin carboxylase [Nicotiana tabacum] Length = 536 Score = 244 bits (624), Expect = 8e-64 Identities = 57/355 (16%), Positives = 123/355 (34%), Gaps = 20/355 (5%) Query: 13 KSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPS 72 KS+ +L + + +R ++ + I + + + Y D H+ L Sbjct: 57 KSSTRGGALAATCRAEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADE 116 Query: 73 ATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDV 132 + + + P + +I + + +G L E+ M R + F+G + Sbjct: 117 SVCIGEAPSNQSYLVIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNP 176 Query: 133 LASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSS 192 + DK + +++AG+ P + + ++G P+ +K G Sbjct: 177 DSIRVMGDKSTARDTMKNAGVPTVPGSDGLL--QSTEEGVRLAEEIGYPVMIKATAGGGG 234 Query: 193 VGVSKVTSEEQYAIAVDL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCG 245 G+ +++ + A + V +E+ + R IE VL + G Sbjct: 235 RGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFG 294 Query: 246 EIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFL 305 E + K ++E A+ PE+ + + AV A ++G G+ V+ L Sbjct: 295 ERD--CSIQRRNQKLLEE-----APSPALTPELRNAMGDAAVAAAASIGYIGVGTVEFLL 347 Query: 306 TPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 E+NT + P S + + R+ R+ ++ + Sbjct: 348 DERGSFYFMEMNTRIQVEH----PVTEMISSVDLIEEQIRVAMGEKLRYKQEDIV 398 >ref|NP_371638.1| (NC_002758) pyruvate carboxylase [Staphylococcus aureus subsp. aureus Mu50] ref|NP_374232.1| (NC_002745) pyruvate carboxylase [Staphylococcus aureus subsp. aureus N315] dbj|BAB42211.1| (AP003132) pyruvate carboxylase [Staphylococcus aureus subsp. aureus N315] dbj|BAB57276.1| (AP003361) pyruvate carboxylase [Staphylococcus aureus subsp. aureus Mu50] Length = 1150 Score = 244 bits (623), Expect = 1e-63 Identities = 51/328 (15%), Positives = 102/328 (30%), Gaps = 24/328 (7%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA--QVPGK 82 K I + +R ++ + + +S + Y H + + P + Sbjct: 2 KQIKKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAE 61 Query: 83 HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKD 142 + + VD I P +G L E+ + F+G + DK Sbjct: 62 SYLNIERIIDVAKQANVDAIHPG-YGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKV 120 Query: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEE 202 + A L + P E + G PL +K + G G+ V E Sbjct: 121 KARTTAIKADLPVIPGTDGPIK--SYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREES 178 Query: 203 QYAIAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYA 255 + A A + +V +E+ I + IE V+G+++ E Sbjct: 179 ELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERD--CSVQR 236 Query: 256 YDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINE 315 K ++ V ++P + +I A+Q + + V+ ++ + E E Sbjct: 237 RHQKVVE-----VAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSGD-EFFFIE 290 Query: 316 INTLPGFTNISMYPKLWQASGLGYTDLI 343 +N + +G+ Sbjct: 291 VNPRVQVEHT----ITEMVTGIDIVKTQ 314 >gb|AAK25989.1|AF360279_1 (AF360279) putative biotin carboxylase [Arabidopsis thaliana] Length = 537 Score = 244 bits (622), Expect = 1e-63 Identities = 53/339 (15%), Positives = 113/339 (32%), Gaps = 20/339 (5%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ + I + + + Y D H+ L A + + P + +I Sbjct: 76 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADEAVCIGEAPSNQSYLVI 135 Query: 89 DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLL 148 + + +G L E+ M R + F+G + + DK + + Sbjct: 136 PNVLSAAISRGCTMLHPGYGFLSENALFVEMCRDHGINFIGPNPDSIRVMGDKATARETM 195 Query: 149 RDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV 208 ++AG+ P + V +++G P+ +K G G+ ++ + Sbjct: 196 KNAGVPTVPGSDGLL--QSTEEAVRVANEIGFPVMIKATAGGGGRGMRLAKEPGEFVKLL 253 Query: 209 DL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYI 261 A + +E+ + R IE VL + GE + K + Sbjct: 254 QQAKSEAAAAFGNDGCYLEKFVQNPRHIEFQVLADKFGNVVHFGERD--CSIQRRNQKLL 311 Query: 262 DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG 321 +E A+ E+ + AV A ++G G+ V+ L E+NT Sbjct: 312 EE-----APSPALTAELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQ 366 Query: 322 FTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + P + + R+ R+ ++ + Sbjct: 367 VEH----PVTEMIYSVDLIEEQIRVAMGEKLRYKQEDIV 401 >ref|NP_198386.1| (NC_003076) acetyl-CoA carboxylase [Arabidopsis thaliana] pir||T01180 acetyl-CoA carboxylase (EC 6.4.1.2), biotin carboxylase - Arabidopsis thaliana gb|AAC09008.1| (U90879) biotin carboxylase subunit [Arabidopsis thaliana] gb|AAC09009.1| (U91414) heteromeric acetyl-CoA carboxylase biotin carboxylase subunit [Arabidopsis thaliana] gb|AAC13611.1| (AF058826) Arabidopsis thaliana biotin carboxylase subunit (GB:U90879) dbj|BAB11486.1| (AB025636) acetyl-CoA carboxylase, biotin carboxylase [Arabidopsis thaliana] Length = 537 Score = 244 bits (622), Expect = 1e-63 Identities = 53/339 (15%), Positives = 113/339 (32%), Gaps = 20/339 (5%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ + I + + + Y D H+ L A + + P + +I Sbjct: 76 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADEAVCIGEAPSNQSYLVI 135 Query: 89 DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLL 148 + + +G L E+ M R + F+G + + DK + + Sbjct: 136 PNVLSAAISRGCTMLHPGYGFLSENALFVEMCRDHGINFIGPNPDSIRVMGDKATARETM 195 Query: 149 RDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV 208 ++AG+ P + V +++G P+ +K G G+ ++ + Sbjct: 196 KNAGVPTVPGSDGLL--QSTEEAVRVANEIGFPVMIKATAGGGGRGMRLAKEPGEFVKLL 253 Query: 209 DL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYI 261 A + +E+ + R IE VL + GE + K + Sbjct: 254 QQAKSEAAAAFGNDGCYLEKFVQNPRHIEFQVLADKFGNVVHFGERD--CSIQRRNQKLL 311 Query: 262 DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG 321 +E A+ E+ + AV A ++G G+ V+ L E+NT Sbjct: 312 EE-----APSPALTAELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQ 366 Query: 322 FTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + P + + R+ R+ ++ + Sbjct: 367 VEH----PVTEMIYSVDLIEEQIRVAMGEKLRYKQEDIV 401 >ref|NP_354336.1| (NC_003062) AGR_C_2451p [Agrobacterium tumefaciens] [Agrobacterium tumefaciens str. C58 (Cereon)] ref|NP_532020.1| (NC_003304) acetyl-CoA carboxylase, biotin carboxylase [Agrobacterium tumefaciens str. C58 (U. Washington)] gb|AAK87121.1| (AE008059) AGR_C_2451p [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAL42336.1| (AE009094) acetyl-CoA carboxylase, biotin carboxylase [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 448 Score = 243 bits (620), Expect = 2e-63 Identities = 57/328 (17%), Positives = 106/328 (31%), Gaps = 24/328 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 + + +R ++ L + + + + + D H+ L + + P Sbjct: 1 MVSKILIANRGEIALRVLRAAKELGIPTVAVHSTADADAMHVRLADESVCIGPPPSRDSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + D + P +G L E+ +L + F+G DK Sbjct: 61 LNIHQIVAACEITGADAVHPG-YGFLSENAKFADILDAHGITFIGPTAEHIRIMGDKITA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K+ ++ G+ + P + E+ +G P+ +K G G+ +E Sbjct: 120 KQTAQELGIPVVPGSDGEVK---PENALEIARTIGFPVLIKATAGGGGRGMKVAKTEADL 176 Query: 205 AIAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 AV A + V +E+ + K R IE V G+ A GE Sbjct: 177 EDAVATARSEAAAAFGNDAVYMEKYLGKPRHIEVQVFGDGEGNAVHLGERD--CSLQRRH 234 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E + A+ E KI I A + L G ++ E E+N Sbjct: 235 QKVLEEANS-----PALTVEQRMKIGEICADAMRKLKYRGAGTIEFLY-ENGEFYFIEMN 288 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITR 345 T + P +G+ R Sbjct: 289 TRLQVEH----PVTEAITGMDLVQEQIR 312 >gb|AAF80469.1|AF163150_1 (AF163150) acetyl-CoA carboxylase [Glycine max] Length = 539 Score = 242 bits (619), Expect = 3e-63 Identities = 59/351 (16%), Positives = 118/351 (32%), Gaps = 20/351 (5%) Query: 17 HEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSL 76 H +L + + + +R ++ + I + + + Y D H+ L A + Sbjct: 62 HCGALHATCSGDKILIANRGEIAVRVIRTAHELGIPCVAVYSTIDKDALHVKLADEAVCI 121 Query: 77 AQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASA 136 + P + LI + + +G L E+ M R + F+G + + Sbjct: 122 GEAPSSQSYLLIPNVLSAAISRRCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIR 181 Query: 137 ACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVS 196 DK + ++ AG+ P + + +++G P+ +K G G+ Sbjct: 182 VMGDKATARETMKKAGVPTVPGSDGLL--QSTEEAIRLANEIGFPVMIKATAGGGGRGMR 239 Query: 197 KVTSEEQYAIAVDL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVL 249 + + A + V +E+ I R IE VL + GE Sbjct: 240 LAKEPAELVKFLQQAKSEAAAAFGNDGVYLEKYIQNPRHIEFQVLADKYGNVVHFGERD- 298 Query: 250 TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPEN 309 + K ++E A+ PE+ + AV A ++G G+ V+ L Sbjct: 299 -CSIQRRNQKLLEE-----APSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERG 352 Query: 310 EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 E+NT + P S + R+ R+ ++ + Sbjct: 353 SFYFMEMNTRIQVEH----PVTEMISSTDLIEEQIRVAMGEKLRYKQEDIV 399 >ref|NP_214014.1| (NC_000918) biotin carboxylase [Aquifex aeolicus] pir||G70427 biotin carboxylase - Aquifex aeolicus gb|AAC07413.1| (AE000742) biotin carboxylase [Aquifex aeolicus] Length = 477 Score = 242 bits (619), Expect = 3e-63 Identities = 54/343 (15%), Positives = 110/343 (31%), Gaps = 22/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 + +R +V + I + + + Y H+ A + P + Sbjct: 1 MFRKVLVANRGEVAVRIIRACKELGIKTVAIYSEADVRSLHVKKADEAYLITGDPIRAYL 60 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + + D I P +G L E+ R + F+G DK K Sbjct: 61 DYVRIVDLAKQVGADAIHPG-YGFLAENADFARYCRRRGITFIGPTPEQIEMFGDKVKAK 119 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 +++++ GL P R ++G P+ +K A G G+ + +EE+ Sbjct: 120 KVMKEVGLPTIPGT--EEPVRTLEDAKHAVKEIGFPVMLKAAYGGGGRGMRVIRNEEELE 177 Query: 206 IAVDLA------FEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 + A F + +E+ + + IE +LG+ GE Sbjct: 178 KNFESAFREAETFFGKGDLFIEKYVENPKHIEVQILGDKYGNIIHLGERD--CSIQRRHQ 235 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEIN 317 K I+ + + ++ KI AV+A +G ++ + E E+N Sbjct: 236 KLIE-----IAPSPKLPQDLRMKILGNAVRAMTRVGYENAGTLEFLVDLKTGEYYFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + +G+ + + R+ + + Sbjct: 291 TRLQVEHT----ITEAITGVDIVEAMIRIAAGEPLPYLQSDIT 329 >gb|AAD19835.1| (AF060799) D-alanyl-D-alanine ligase [Amycolatopsis orientalis] Length = 348 Score = 242 bits (619), Expect = 3e-63 Identities = 122/355 (34%), Positives = 197/355 (55%), Gaps = 18/355 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +L++GI+FGG S EH +S++SA+ + +D +++ +GI + G W + D Sbjct: 1 MGRLKIGILFGGLSEEHPISIKSAREVQKHLDLEKYEPYYIGITQSGSWMLCDGPAEDWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 D L P + +DV+ P++HG GEDG++QG+L Sbjct: 61 NGDVRPAVLSPDRGVHGLLVLDEGK--------YETIALDVVLPVLHGKFGEDGAMQGLL 112 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 ++ +P+VG D+ +S C+DK +T ++R AG+ F +T N + L Sbjct: 113 EISGIPYVGCDLPSSVMCIDKSLTYSVVRGAGIATPTFHIVTPDNDVD------PDALNY 166 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-NP 239 P+FVKPA GSS GVSKV+S+E+ A+ A ++D K+++E+ + G EI C++LG+ + Sbjct: 167 PVFVKPARSGSSFGVSKVSSKEELPAALAEARQYDAKILIEEAVIGSEIGCSILGDGEDL 226 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 A + LT F+ + E G++ +VPA I D ++ A Y+ LGC+ Sbjct: 227 FAGEVDRVALTHGFFKIHQEKSPETGSENSSFIVPADIPDASRDLVQETAKVIYRALGCS 286 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 G+ARVD+FL + VV+NE+NTLPG T+ S YP++ A+GL D+I RL++L L Sbjct: 287 GLARVDLFLKEDGSVVLNEVNTLPGLTSYSRYPRMMNAAGLSLGDVIDRLVKLTL 341 >ref|NP_302152.1| (NC_002677) D-alanine-D-alanine ligase A [Mycobacterium leprae] emb|CAC30631.1| (AL583923) D-alanine-D-alanine ligase A [Mycobacterium leprae] Length = 384 Score = 242 bits (619), Expect = 3e-63 Identities = 148/367 (40%), Positives = 215/367 (58%), Gaps = 20/367 (5%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 ++RV +VFGG+S EH VS SA +I+ +D+ RFDVV +GI +G W ++D + L Sbjct: 17 RVRVAVVFGGRSNEHAVSCLSAGSILRNLDRQRFDVVAVGITPEGTWMLTDPNPDALAIA 76 Query: 63 DPAHIALRPSATSLAQVPG--------KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDG 114 + A+ + +P G+ L +VDV+FP++HG GEDG Sbjct: 77 NRQLPAVSCESGIELTLPADPRRSGQLVSLSHGAGLGAGEVLTSVDVVFPVLHGPYGEDG 136 Query: 115 SLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 ++QG+L +A +P+VG+ VLASAA MDK+ TK+L GL ++ + L + Sbjct: 137 TIQGLLELARVPYVGAGVLASAAGMDKEFTKKLFAAEGLPLSAYTVLRPLRPTLH--RQE 194 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL 234 +L LP+FVKPA GSS+G+S+V+S Q A+ A D KVIVE + GRE+EC VL Sbjct: 195 CERLSLPVFVKPARGGSSIGISRVSSWGQLPSAIAYARRHDPKVIVEAAVNGRELECGVL 254 Query: 235 G--NDNPQASTCGEIV------LTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIA 286 + AS GEI FY + TKY+D D A++ VPA + ++ D++R +A Sbjct: 255 EMPDGTVAASAVGEIRVAGVSGSEDSFYDFTTKYLD-DAAELDVPAKVDDDVADEVRQLA 313 Query: 287 VQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 +QA++ + C G+ARVD FLT + VINEINT+PGFT SMYPKLW S + Y L+ + Sbjct: 314 IQAFRAIDCQGLARVDFFLTDDG-PVINEINTMPGFTMTSMYPKLWAVSSVDYPTLLATM 372 Query: 347 IELALER 353 ++ AL R Sbjct: 373 VDTALAR 379 >pir||T07093 acetyl-CoA carboxylase (EC 6.4.1.2) biotin carboxylase chain precursor - soybean gb|AAC02267.1| (AF007100) biotin carboxylase precursor [Glycine max] gb|AAF80468.1|AF163149_1 (AF163149) acetyl-CoA carboxylase [Glycine max] Length = 539 Score = 242 bits (618), Expect = 3e-63 Identities = 58/351 (16%), Positives = 120/351 (33%), Gaps = 20/351 (5%) Query: 17 HEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSL 76 H +L + + + +R ++ + I + + + Y D H+ L A + Sbjct: 62 HCGALHATCSGDKILIANRGEIAVRVIRTAHELGIPCVAVYSTIDKDALHVKLADEAVCI 121 Query: 77 AQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASA 136 + P + LI + + +G L E+ M R + F+G + + Sbjct: 122 GEAPSSQSYLLIPNVLSAAISRRCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIR 181 Query: 137 ACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVS 196 DK + ++ AG+ P + + +++G P+ +K G G+ Sbjct: 182 VMGDKATARETMKKAGVPTVPGSDGLL--QSTEEAIRLANEIGFPVMIKATAGGGGRGMR 239 Query: 197 KVTSEEQYAIAVDL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVL 249 +++ + A + V +E+ I R IE VL + GE Sbjct: 240 LAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYIQNPRHIEFQVLADKYGNVVHFGERD- 298 Query: 250 TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPEN 309 + K ++E A+ PE+ + AV A ++G G+ ++ L Sbjct: 299 -CSIQRRNQKLLEE-----APSPALTPELRKAMGDAAVAAAASIGYIGVGTIEFLLDERG 352 Query: 310 EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 E+NT + P S + R+ R+ ++ + Sbjct: 353 SFYFMEMNTRIQVEH----PVTEMISSTDLIEEQIRVAMGEKLRYKQEDIV 399 >emb|CAB09721.1| (Z97025) pyruvate carboxylase [Bacillus subtilis] Length = 384 Score = 242 bits (618), Expect = 4e-63 Identities = 57/344 (16%), Positives = 109/344 (31%), Gaps = 25/344 (7%) Query: 23 SAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ--VP 80 S ++I + +R ++ + + ++ + Y H A + + P Sbjct: 2 SQQSIQKVLVANRGEIAIRIFRACTELNIRTVAVYSKEDSGSYHRYKADEAYLVGEGKKP 61 Query: 81 GKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMD 140 + + VD I P +G L E+ + F+G D Sbjct: 62 IDAYLDIEGIIDIAKRNKVDAIHPG-YGFLSENIHFARRCEEEGIVFIGPKSEHLDMFGD 120 Query: 141 KDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTS 200 K + AG+ + P + + G P+ +K + G G+ V S Sbjct: 121 KVKAREQAEKAGIPVIPGSDG--PAETLEAVEQFGQANGYPIIIKASLGGGGRGMRIVRS 178 Query: 201 EEQYAIAVDL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDF 253 E + A + A + +V VE+ I + IE V+G+ E Sbjct: 179 ESEVKEAYERAKSEAKAAFGNDEVYVEKLIENPKHIEVQVIGDKQGNVVHLFERD--CSV 236 Query: 254 YAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVI 313 K I+ V +++PE+ D+I AV + + V+ + NE Sbjct: 237 QRRHQKVIE-----VAPSVSLSPELRDQICEAAVALAKNVNYINAGTVEFLV-ANNEFYF 290 Query: 314 NEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 E+N + +G+ L+ H+ Sbjct: 291 IEVNPRVQVEHT----ITEMITGVDIVQTQI-LVAQGHSLHSKK 329 >sp|Q9ZGN0|DDL_MYCSM D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAC99396.1| (AF077728) D-alanine:D-alanine ligase [Mycobacterium smegmatis] Length = 373 Score = 242 bits (618), Expect = 4e-63 Identities = 155/363 (42%), Positives = 221/363 (60%), Gaps = 16/363 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 + RV +V+GG+S+EH +S SA +I+ +D RF+VV +GI G W ++D L Sbjct: 10 RTRVAVVYGGRSSEHAISCVSAGSILRNLDPERFEVVAIGITPDGSWVLTDGRPETLAIT 69 Query: 63 D---PAHIALRPSATSLAQVPGKH-EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118 D PA + +L P + + + G+ L VDV+FP++HG GEDG++QG Sbjct: 70 DGKLPAVTEASGTELALPAAPNRSGQLLALGNGPGEILAAVDVVFPVLHGPYGEDGTIQG 129 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 +L +A +P+VGS VLASAA MDK+ TK+LL GL I + L E +L Sbjct: 130 LLELAGVPYVGSGVLASAAGMDKEYTKKLLAAEGLPIGDQVVLRPGVETLDL--EQRERL 187 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG--N 236 GLP+FVKPA GSS+GVS+VT+ ++ AV LA D KVIVE + GRE+EC VL + Sbjct: 188 GLPVFVKPARGGSSIGVSRVTAWDELPAAVALARRHDPKVIVEAAVIGRELECGVLEFPD 247 Query: 237 DNPQASTCGE------IVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 +AST GE FY + TKY++ D A++ VPA + ++ D+IR +AV+A+ Sbjct: 248 GRLEASTVGEIRVAGVRGREDGFYDFATKYLE-DAAELDVPAKVDDDVADEIRQLAVRAF 306 Query: 291 QTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 +GC G+ARVD FLT + VINEINT+PGFT ISMYP++W A G+ Y L+ +++ A Sbjct: 307 TAIGCQGLARVDFFLTDDG-PVINEINTMPGFTTISMYPRMWAAGGIDYPTLLAAMVDTA 365 Query: 351 LER 353 + R Sbjct: 366 IAR 368 >pir||T06279 acetyl-CoA carboxylase (EC 6.4.1.2), biotin carboxylase chain precursor - soybean gb|AAC23573.1| (AF068249) biotin carboxylase precursor [Glycine max] Length = 539 Score = 242 bits (617), Expect = 5e-63 Identities = 59/351 (16%), Positives = 119/351 (33%), Gaps = 20/351 (5%) Query: 17 HEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSL 76 H +L + + + +R ++ + I + + + Y D H+ L A + Sbjct: 62 HCGALHATCSGDKILIANRGEIAVRVIRTAHELGIPCVAVYSTIDKDALHVKLADEAVCI 121 Query: 77 AQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASA 136 + P + LI + + +G L E+ M R + F+G + + Sbjct: 122 GEAPSSQSYLLIPNVLSAAISRRCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIR 181 Query: 137 ACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVS 196 DK + ++ AG+ P + + +++G P+ +K G G+ Sbjct: 182 VMGDKATARETMKKAGVPTVPGSDGLL--QSTEEAIRLANEIGFPVMIKATAGGGGRGMR 239 Query: 197 KVTSEEQYAIAVDL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVL 249 ++ + A + V +E+ I R IE VL + GE Sbjct: 240 LAKEPAEFVKFLQQAKSEAAAAFGNDGVYLEKYIQNPRHIEFQVLADKYGNVVHFGERD- 298 Query: 250 TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPEN 309 + K ++E A+ PE+ + AV A ++G G+ V+ L Sbjct: 299 -CSIQRRNQKLLEE-----APSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERG 352 Query: 310 EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 E+NT + P S + R+ R+ ++ + Sbjct: 353 SFYFMEMNTRIQVEH----PVTEMISSTDLIEEQIRVAMGEKLRYKQEDIV 399 >sp|Q47823|DDL_ENTGA D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAB17903.1| (U39789) D-alanine:D-alanine ligase [Enterococcus gallinarum] Length = 316 Score = 241 bits (616), Expect = 7e-63 Identities = 116/320 (36%), Positives = 186/320 (57%), Gaps = 17/320 (5%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ +++GG+SAEH+VSL SA ++V+A+ + + V L+ I + GQW + + Sbjct: 1 MKIILLYGGRSAEHDVSLLSAFSVVNAVYYNYYQVQLVMITRDGQWLKGSLLTEAPTSKE 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 ++ +Q Q G+ ++FP++HG GEDG++QG L Sbjct: 61 VLNL-------------TDSAYQGTPIQPGEIKEEDAIVFPLLHGPNGEDGTIQGFLETI 107 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITL---TRANRHNISFAEVESKLGL 180 +P+VG+ VL SA MDK +TK +L+ AG+ P++ + F + E L Sbjct: 108 GMPYVGAGVLTSACGMDKIMTKYILQAAGIPQVPYVPVLKNYWKENPKKVFEQCEGSLLY 167 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+F+KPAN GSSVG++K + E+ A+ A+ +D + IVEQGI+ REIE AVLGN++ + Sbjct: 168 PMFIKPANMGSSVGITKAENREELQNALQEAYRYDTRAIVEQGIEAREIEVAVLGNEDVR 227 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 + GEIV FY Y++KY+D ++ +PA I E K + A +AY LG +G++R Sbjct: 228 TTMPGEIVKDVAFYDYNSKYLDNK-IEMQIPAQIPEETQAKAQEFAKKAYTMLGGSGLSR 286 Query: 301 VDVFLTPENEVVINEINTLP 320 D FLT +NE+ +NE+NT+P Sbjct: 287 CDFFLTNKNELFLNELNTIP 306 >pir||T44813 biotin carboxylase (EC 6.3.4.14) yngH [imported] - Bacillus subtilis gb|AAF08802.1|AF184956_9 (AF184956) YngH [Bacillus subtilis] Length = 444 Score = 241 bits (616), Expect = 7e-63 Identities = 56/342 (16%), Positives = 115/342 (33%), Gaps = 22/342 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV-PGKHE 84 + +R ++ + I + + + Y D H A + + + Sbjct: 1 MFTKVLIANRGEIAMRIIRTCSRLGIKTVAVYSEADRDAPHTKAATEAYLIGESRVSESY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D I P +G L E+ + N+ F+G A K Sbjct: 61 LNIERIIETAKKANADAIHPG-YGLLSENSRFAERCKQENIVFIGPAPDIIAKMGSKIEA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 ++ + AG+ + P ++ + + S++G P+ +K + G +G+ V +EE Sbjct: 120 RKAMEAAGVPVVPGVSESLGDIQE--ACRTASQIGYPVMLKASAGGGGIGMQLVQNEEAL 177 Query: 205 AIAVD------LAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A + F D + +E+ I+ R IE +L + E Sbjct: 178 RKAYEGNKKRAADFFGDGSMYIEKVIEHARHIEVQLLADHFGHTIHLFERD--CSVQRRH 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E + ++ KI AV+A + +G ++ + P E+N Sbjct: 236 QKVIEE-----APSPFLDDKLRMKIGQTAVKAAKAIGYTNAGTIEFLVDPNQNFYFLEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 T + P + +GL + R+ + + Sbjct: 291 TRLQVEH----PVTEEITGLDLVEQQLRIAAGHTLTFSQQDI 328 >ref|NP_385425.1| (NC_003047) PROBABLE BIOTIN CARBOXYLASE PROTEIN [Sinorhizobium meliloti] emb|CAC45898.1| (AL591786) PROBABLE BIOTIN CARBOXYLASE PROTEIN [Sinorhizobium meliloti] Length = 449 Score = 241 bits (614), Expect = 1e-62 Identities = 59/343 (17%), Positives = 115/343 (33%), Gaps = 24/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 I + +R ++ L + + ++ + + D H+ L + + P + Sbjct: 3 MISKILIANRGEIALRVLRACKELGIATVAVHSTADSDAMHVRLADESVCIGPPPSRESY 62 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + D + P +G L E+ +L + F+G DK Sbjct: 63 LNIHQIVAACEITGADAVHPG-YGFLSENAKFADILDAHGITFIGPTAEHIRLMGDKITA 121 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K+ + G+ + P + E+ ++G P+ +K G G+ +EE+ Sbjct: 122 KKTAEELGIPVVPGSDGEVR---PENALEIARQIGFPVLIKATAGGGGRGMKVARTEEEL 178 Query: 205 AIAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 AV A + V +E+ + K R IE V+G+ A GE Sbjct: 179 ENAVATARSEAAAAFGNDAVYMEKFLGKPRHIEIQVVGDGEGNAIHLGERD--CSLQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K +E + A+ E KI + A + L G ++ E E+N Sbjct: 237 QKVWEEANS-----PALNVEQRMKIGQVCADAMKKLKYRGAGTIEFLY-ENGEFYFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P +G+ R+ A ++ + Sbjct: 291 TRLQVEH----PITEAITGIDLVHEQIRVASGAGLSAKQEDIV 329 >ref|NP_217497.1| (NC_000962) ddlA [Mycobacterium tuberculosis H37Rv] sp|P95114|DDL_MYCTU D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||B70673 probable ddlA - Mycobacterium tuberculosis (strain H37RV) emb|CAB05431.1| (Z83018) ddlA [Mycobacterium tuberculosis H37Rv] Length = 373 Score = 241 bits (614), Expect = 1e-62 Identities = 151/363 (41%), Positives = 219/363 (59%), Gaps = 16/363 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 ++RV +VFGG+S EH +S SA +I+ +D RFDV+ +GI G W ++DA+ L Sbjct: 10 RVRVAVVFGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTIT 69 Query: 63 DPAHIALRPSATSLAQVPG----KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118 + ++ + + +P + + G+ L +VDV+FP++HG GEDG++QG Sbjct: 70 NRELPQVKSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQG 129 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 +L +A +P+VG+ VLASA MDK+ TK+LL GL + + L + +L Sbjct: 130 LLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLH--RQECERL 187 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG--N 236 GLP+FVKPA GSS+GVS+V+S +Q AV A D KVIVE I GRE+EC VL + Sbjct: 188 GLPVFVKPARGGSSIGVSRVSSWDQLPAAVARARRHDPKVIVEAAISGRELECGVLEMPD 247 Query: 237 DNPQASTCGE------IVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 +AST GE FY + TKY+D D A++ VPA + ++ + IR +A++A+ Sbjct: 248 GTLEASTLGEIRVAGVRGREDSFYDFATKYLD-DAAELDVPAKVDDQVAEAIRQLAIRAF 306 Query: 291 QTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + C G+ARVD FLT + VINEINT+PGFT ISMYP++W ASG+ Y L+ +IE Sbjct: 307 AAIDCRGLARVDFFLTDDG-PVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIETT 365 Query: 351 LER 353 L R Sbjct: 366 LAR 368 >ref|NP_251581.1| (NC_002516) probable biotin carboxylase/biotin carboxyl carrier protein [Pseudomonas aeruginosa] pir||F83284 probable biotin carboxylase/biotin carboxyl carrier protein PA2891 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG06279.1|AE004715_5 (AE004715) probable biotin carboxylase/biotin carboxyl carrier protein [Pseudomonas aeruginosa] Length = 661 Score = 240 bits (613), Expect = 2e-62 Identities = 55/328 (16%), Positives = 106/328 (31%), Gaps = 22/328 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ-VPGKHEHQL 87 + +R ++ + + + Y D H+ L A + + L Sbjct: 6 KILVANRGEIACRVLRTAHELGYRSVAVYSEADADTRHVQLADEAVCIGPAAVAQSYLNL 65 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + + I P +G L E+ A + F+G D A K ++K Sbjct: 66 EAILDAARRSGAEAIHPG-YGFLSENAEFARACEAAGIVFIGPDAEAIHLMGSKRLSKIA 124 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + AG+ P + + ++G PL +K + G G+ V Q Sbjct: 125 MLAAGVPCIPGYEGAEQDDA--TLRREAERIGYPLMIKASAGGGGRGMRLVEEPGQLLEQ 182 Query: 208 VDLA------FEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 + A ++I+E+ + + R +E V G+ + GE K Sbjct: 183 LRTARSEALGAFGSAELILERAVLRPRHVEIQVFGDRHGNLLYLGERD--CSVQRRHQKV 240 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 I+E + ++ + AV+A ++ G V+ L + E+NT Sbjct: 241 IEE-----APCPVLDADLRRAMGEAAVKAAASVNYVGAGTVEFLLGEDGRFYFLEMNTRL 295 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIE 348 + P +G R+ E Sbjct: 296 QVEH----PVTELVTGQDLVAWQIRIAE 319 >ref|NP_337574.1| (NC_002755) D-alanine--D-alanine ligase [Mycobacterium tuberculosis CDC1551] gb|AAK47388.1| (AE007126) D-alanine--D-alanine ligase [Mycobacterium tuberculosis CDC1551] Length = 373 Score = 240 bits (612), Expect = 2e-62 Identities = 152/363 (41%), Positives = 220/363 (59%), Gaps = 16/363 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 ++RV +VFGG+S EH +S SA +I+ +D RFDV+ +GI G W ++DA+ L Sbjct: 10 RVRVAVVFGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTIT 69 Query: 63 DPAHIALRPSATSLAQVPG----KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118 + ++ + + +P + + G+ L +VDV+FP++HG GEDG++QG Sbjct: 70 NRELPQVKSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQG 129 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 +L +A +P+VG+ VLASA MDK+ TK+LL GL + + L + +L Sbjct: 130 LLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLH--RQECERL 187 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG--N 236 GLP+FVKPA GSS+GVS+V+S +Q AV A D KVIVE I GRE+EC VL + Sbjct: 188 GLPVFVKPARGGSSIGVSRVSSWDQLPAAVARARRHDPKVIVEAAISGRELECGVLEMPD 247 Query: 237 DNPQASTCGE------IVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 +AST GE FY + TKY+D D A++ VPA + ++ + IR +A++A+ Sbjct: 248 GTLEASTLGEIRVAGVRGREDSFYDFATKYLD-DAAELDVPAKVDDQVAEAIRQLAIRAF 306 Query: 291 QTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + C G+ARVD FLT + VINEINT+PGFT ISMYP++W ASG+ Y L+ +IE A Sbjct: 307 AAIDCRGLARVDFFLTDDG-PVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIETA 365 Query: 351 LER 353 L R Sbjct: 366 LAR 368 >ref|NP_219107.1| (NC_000919) D-alanine--D-alanine ligase (ddlA) [Treponema pallidum] sp|O83676|DDL_TREPA D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||A71296 D-alanine--D-alanine ligase (EC 6.3.2.4) A ddlA - syphilis spirochete gb|AAC26568.1| (AE001241) D-alanine--D-alanine ligase (ddlA) [Treponema pallidum] Length = 396 Score = 239 bits (610), Expect = 3e-62 Identities = 128/346 (36%), Positives = 203/346 (57%), Gaps = 5/346 (1%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 V +++GG+SAEH+VS++SA+ + + + V+L+GI ++G W+ A Sbjct: 3 HVTLLYGGRSAEHDVSVRSARFVARTL-CLQHTVMLIGITRRGVWYAQPACALEQLCTGT 61 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 ++++ + G P T DV+FP++HG+ GEDG++QG+L + Sbjct: 62 VALSIQEDEKRRVCLVPGGGTAGAFVIAGMPCVT-DVVFPVLHGSYGEDGTVQGLLEMLQ 120 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR---HNISFAEVESKLGLP 181 +P+VG V ASA MDK K L + AGL + PF+ + A++E++LG P Sbjct: 121 VPYVGCGVCASALAMDKVKAKMLWQAAGLPVLPFVFFRKDAWRMHMQEFVAQLETRLGYP 180 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 LFVKPA GSSVG S V + A++ AF++D V+VE+ ++ REIECA+ GN Sbjct: 181 LFVKPAQAGSSVGASAVQTRAPLIPAIEAAFQWDEVVLVERYVRAREIECALSGNGPYTV 240 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 GE++ FY Y+ KY D A+V+V A + ++I +A++AY+ LG G+ARV Sbjct: 241 HGAGEVIAQGAFYDYEEKYADASVARVLVTAPLETAQYEQITTLALRAYEALGLTGLARV 300 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 D FL EV +NE+NT+PGFT+IS++P++ QA+G+ DL+ +L+ Sbjct: 301 DFFLLETGEVYVNEVNTMPGFTSISLFPQICQAAGVAPQDLMAQLL 346 >gb|AAA60990.1| (L29638) ligase [Enterococcus casseliflavus] Length = 350 Score = 239 bits (609), Expect = 4e-62 Identities = 123/355 (34%), Positives = 182/355 (50%), Gaps = 9/355 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKS--RFDVVLLGIDK-QGQWHVSDASNYLLN 60 ++ I+FGG S E+ VSL SA + ++A+ S +D+ L+GI W++ + Sbjct: 2 KKIAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIR 61 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 D ++ E Q DV+FPI+HG GEDGS+QG+ Sbjct: 62 QDTWL-----LDTKHKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLF 116 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + LP+VG V SA CM+K + + G+ AP I LT G Sbjct: 117 ELMKLPYVGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGF 176 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+F KP GSS G++KVT E+ A A+ AF + V++++ I G EI C +LGND+ Sbjct: 177 PVFFKPNEAGSSKGITKVTCVEEIASALKEAFTYCSAVLLQKNIAGVEIGCGILGNDSLT 236 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 C I L F+ ++ KY AK+ VPA + I K++ A Y++LG G+AR Sbjct: 237 VGACDAISLVDGFFDFEEKYQL-ISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLAR 295 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 +D F+T E+ +NEINT+PGFT+ S YP + A GL Y +L+ +L+ LA E Sbjct: 296 IDFFVTERGELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLLVLAKEEVK 350 >ref|NP_539717.1| (NC_003317) PROPIONYL-COA CARBOXYLASE ALPHA CHAIN, MITOCHONDRIAL [Brucella melitensis] gb|AAL51981.1| (AE009521) PROPIONYL-COA CARBOXYLASE ALPHA CHAIN, MITOCHONDRIAL [Brucella melitensis] Length = 667 Score = 238 bits (608), Expect = 6e-62 Identities = 59/342 (17%), Positives = 119/342 (34%), Gaps = 22/342 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 I + +R ++ I + ++ + Y + H+ + A + P + Sbjct: 1 MIKKILIANRGEIACRVIKSAKKKGIATVAVYSDADRNALHVKMADEAVHIGPAPSNQSY 60 Query: 86 -QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D + P +G L E+ L+ AN+ F+G V A A DK + Sbjct: 61 IVIDKILAAIKEIGADAVHPG-YGFLSENPRFAEALKAANVTFIGPPVNAIDAMGDKITS 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K+L +AG++ P + + +G P+ +K + G G+ ++E+ Sbjct: 120 KKLAAEAGVSTVPGHMGLIEDADE--AVRIAGSIGYPVMIKASAGGGGKGMRIAWNDEEA 177 Query: 205 AIAVDLAF------EFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 L+ D ++ +E+ + + R IE VLG+ + GE + Sbjct: 178 REGFQLSRNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDQHGNVVYLGER--ECSIQRRN 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E + + AV + +G V+ + E+N Sbjct: 236 QKVIEE-----APSPFLDEATRKAMGEQAVALAKAVGYYSAGTVEFIVDGNRNFYFLEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 T + P +G+ + + R+ R A + Sbjct: 291 TRLQVEH----PVTELITGIDLVEEMIRVASGEKLRFAQADV 328 >ref|NP_220281.1| (NC_000117) UDP-N-acetylmuramate-alanine ligase and D-Ala-D-Ala Ligase [Chlamydia trachomatis] sp|O84767|MUDD_CHLTR MURC/DDL BIFUNCTIONAL ENZYME [INCLUDES: UDP-N-ACETYLMURAMATE--ALANINE LIGASE (UDP-N-ACETYLMURAMOYL-L-ALANINE SYNTHETASE); D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE)] pir||A71475 probable muramate-Ala ligase and D-Ala-D-Ala ligase - Chlamydia trachomatis (serotype D, strain UW3/Cx) gb|AAC68357.1| (AE001348) UDP-N-acetylmuramate-alanine ligase and D-Ala-D-Ala Ligase [Chlamydia trachomatis] Length = 803 Score = 238 bits (607), Expect = 7e-62 Identities = 111/369 (30%), Positives = 178/369 (48%), Gaps = 30/369 (8%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 KL +GI+ GGKS EHE+S+ SAKNI + KS +DV I ++G W Sbjct: 447 KLHLGIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITREGLW------------- 493 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + S + + D + Q L VDV+ PI+HG GEDG++QG L Sbjct: 494 ---------ESVSSLETAEDSGKSVFDPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLET 544 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT---RANRHNISFAEVESKLG 179 P+ G + SA M+K TKR + D G+ + P++ LT + A + Sbjct: 545 IGKPYTGPAIAFSAIAMNKVFTKRFMSDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAFS 604 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQ-GIKGREIECAVLGNDN 238 P+FVK ++ GSS+GV +V + + A++ AF D+ V VE+ + +EIE +VLG+ + Sbjct: 605 FPIFVKSSHLGSSIGVFEVHNVIELRDAINEAFMRDNDVFVEENRLGCKEIEVSVLGDGS 664 Query: 239 P--QASTCGEIVLTSDFYAYDTKY--IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 + E + F Y KY + A++V ++ EI ++I A + Y+ L Sbjct: 665 GAFVVAGLHERRGSGGFIDYQEKYGLSGKSSAQIVFDTDLSKEIQEQILEAADKIYRLLL 724 Query: 295 CAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 G R+D F+ E ++E+N +PG T S + + G Y ++ +L+ L+R Sbjct: 725 GKGSCRIDFFVDEEGNFWLSEMNPIPGMTETSPFLTSFIRKGWSYEQIVHQLVIDGLQRF 784 Query: 355 AADNALKTT 363 L +T Sbjct: 785 NQRQRLIST 793 >ref|NP_283408.1| (NC_003116) putative acetyl-CoA carboxylase biotin carboxylase component [Neisseria meningitidis Z2491] pir||H81978 probable acetyl-CoA carboxylase (EC 6.4.1.2) biotin carboxylase chain NMA0596 [similarity] - Neisseria meningitidis (group A strain Z2491) emb|CAB83886.1| (AL162753) putative acetyl-CoA carboxylase biotin carboxylase component [Neisseria meningitidis Z2491] Length = 453 Score = 237 bits (605), Expect = 1e-61 Identities = 51/343 (14%), Positives = 108/343 (30%), Gaps = 22/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HE 84 + + +R ++ L + + ++ + + D H+ L + + Sbjct: 1 MLKKVLIANRGEIALRVLRACREMGIATVAVHSEADKDSLHVKLADESVCIGPAASAQSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + D + P +G L E+ + + F+G DK Sbjct: 61 LNVPAIIAAAEVSCADAVHPG-YGFLAENADFAEQVEQSGFTFIGPKPDTIRLMGDKVSA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K + AG+ P + ++ K+G P+ +K + G G+ V +E Sbjct: 120 KHAMIAAGVPCVPGSDGALPDDGEE-ILKIADKIGYPVIIKASGGGGGRGMRVVEKKEDL 178 Query: 205 ------AIAVDLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A + V +E+ ++ R +E V+ +++ A E Sbjct: 179 LQSVEMTKAEAGAAFGNPMVYMERYLQRPRHVEIQVIADEHGNAVYLAERD--CSLQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E I + KI A + +G G + + E E+N Sbjct: 237 QKVIEE-----APAPFITEKERAKIGKACADACKRIGYRGAGTFEFLY-EDGEFFFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P +G+ R+ ++ + Sbjct: 291 TRVQVEH----PVTELITGVDIVQEQLRIAAGLPLQYKQKDIQ 329 >ref|NP_171808.1| (NC_003070) putative 3-methylcrotonyl-CoA carboxylase [Arabidopsis thaliana] gb|AAL50065.1| (AY070723) At1g03090/F10O3_8 [Arabidopsis thaliana] Length = 734 Score = 237 bits (605), Expect = 1e-61 Identities = 55/328 (16%), Positives = 107/328 (31%), Gaps = 23/328 (7%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HEH 85 I + +R ++ + + + + Y D H+ A + + Sbjct: 38 IEKILVANRGEIACRIMRTAKRLGIQTVAVYSDADRDSLHVKSADEAVRIGPPSARLSYL 97 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + I P +G L E + + L F+G A DK +K Sbjct: 98 SGVTIMEAAARTGAQAIHPG-YGFLSESSDFAQLCEDSGLTFIGPPASAIRDMGDKSASK 156 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 R++ AG+ + P + K+G P+ +KP + G G+ V S + +A Sbjct: 157 RIMGAAGVPLVPGYHGH--EQDIDHMKSEAEKIGYPIIIKPTHGGGGKGMRIVQSGKDFA 214 Query: 206 IAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 + A + +++E+ I + R IE + G+ + E Sbjct: 215 DSFLGAQREAAASFGVNTILLEKYITRPRHIEVQIFGDKHGNVLHLYERD--CSVQRRHQ 272 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEIN 317 K I+E I+ + + AV A + +G V+ + ++ E+N Sbjct: 273 KIIEE-----APAPNISEKFRANLGQAAVSAARAVGYYNAGTVEFIVDTESDQFYFMEMN 327 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITR 345 T + P G + R Sbjct: 328 TRLQVEH----PVTEMIVGQDLVEWQIR 351 >ref|NP_241998.1| (NC_002570) biotin carboxylase [Bacillus halodurans] dbj|BAB04851.1| (AP001511) biotin carboxylase [Bacillus halodurans] Length = 452 Score = 237 bits (605), Expect = 1e-61 Identities = 53/343 (15%), Positives = 117/343 (33%), Gaps = 22/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKHE 84 + +R ++ + I + ++ + Y D H+ A + + P + Sbjct: 1 MFKKVLIANRGEIAVRIIRTCQKLNIRTVAIYSEADVDSLHVKHADEAFLIGKPPVAESY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 ++ VD I P +G L E+ A + F+G K Sbjct: 61 LKVDTILEVAKQAGVDAIHPG-YGLLSENARFARACVEAGISFIGPSPEVIERMGSKIAA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + ++ AG+ + P + A+ + K G P+ +K + G +G+ V ++E+ Sbjct: 120 RTAMQTAGVPVIPGSDVALADE--EEAVHLARKFGYPVMLKASAGGGGIGMQLVRNDEEM 177 Query: 205 AIAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A +F D + +E+ + R IE + + + E Sbjct: 178 RKAFAGNQKRATSFFGDGTMFLEKAVENPRHIEVQIAADHHGHVVHLWERD--CSIQRRH 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E + + +KI +AV+A + + + V+ + E + E+N Sbjct: 236 QKVVEE-----APSPFVDEALREKIGQLAVKAAKAIDYRNLGTVECLVDGEKNIYFLEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P + +G+ + + +A Sbjct: 291 TRLQVEH----PVTEEITGIDLVEWQLLIAAGEQLPYAQHEIP 329 >gb|AAK60339.1| (AY034410) biotin carboxylase [Brassica napus] Length = 535 Score = 237 bits (604), Expect = 2e-61 Identities = 53/339 (15%), Positives = 113/339 (32%), Gaps = 20/339 (5%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ + I + + + Y D H+ L A + + P + +I Sbjct: 74 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADEAVCIGEAPSNQSYLVI 133 Query: 89 DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLL 148 + + +G E+ M R + F+G + + DK + + Sbjct: 134 PNVLSAAISRGCTMLHPGYGFHSENALFVEMCREHRINFIGPNPDSIRVMGDKSTARETM 193 Query: 149 RDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV 208 ++AG+ P ++ +++G P+ +K G G+ ++ + Sbjct: 194 KNAGVPTVPGSDGLLK--STEEGVKLANEIGFPVMIKATAGGGGRGMRLANEPSEFVKLL 251 Query: 209 D------LAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYI 261 A + V +E+ + R IE +L + GE + K + Sbjct: 252 QAAKSEAAAAFGNDGVYLEKYVQNPRHIEFQILADKFGNVVHFGERD--CSIQRRNQKLL 309 Query: 262 DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG 321 +E A+ PE+ + AV A ++G G+ V+ L E+NT Sbjct: 310 EE-----APSPALTPELRKAMGDAAVAAAASIGYVGVGTVEFLLDERGSFYFMEMNTRIQ 364 Query: 322 FTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + P + + R+ R+ D + Sbjct: 365 VEH----PVTEMIYSVDLIEEQIRVAMGEKLRYTQDEIV 399 >ref|NP_274857.1| (NC_003112) acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis MC58] pir||F81033 acetyl-CoA carboxylase, biotin carboxylase NMB1861 [imported] - Neisseria meningitidis (group B strain MD58) gb|AAF42195.1| (AE002536) acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis MC58] Length = 453 Score = 236 bits (601), Expect = 4e-61 Identities = 51/343 (14%), Positives = 108/343 (30%), Gaps = 22/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HE 84 + + +R ++ L + + ++ + + D H+ L + + Sbjct: 1 MLKKVLIANRGEIALRVLRACREMGIATVAVHSEADKDSLHVKLADESVCIGPAASAQSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + D + P +G L E+ + + F+G DK Sbjct: 61 LNVPAIIAAAEVSCADAVHPG-YGFLAENADFAEQVEQSGFTFIGPKPDTIRLMGDKVSA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K + AG+ P + ++ K+G P+ +K + G G+ V +E Sbjct: 120 KHAMIAAGVPCVPGSDGALPDDGEE-ILKIADKVGYPVIIKASGGGGGRGMRVVEKKEDL 178 Query: 205 ------AIAVDLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A + V +E+ ++ R +E V+ +++ A E Sbjct: 179 LQSVEMTKAEAGAAFGNPMVYMERYLQRPRHVEIQVIADEHGNAIYLAERD--CSLQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E I + KI A + +G G + + E E+N Sbjct: 237 QKVIEE-----APAPFITEKERAKIGNACADACKRIGYRGAGTFEFLY-EDGEFFFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P +G+ R+ ++ + Sbjct: 291 TRVQVEH----PVTELITGVDIVQEQLRIAAGLPLQYKQKDIQ 329 >sp|Q9ZBR9|DDL_STRCO D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||T35644 D-alanine-D-alanine ligase - Streptomyces coelicolor emb|CAA22403.1| (AL034447) D-alanine-D-alanine ligase [Streptomyces coelicolor A3(2)] Length = 389 Score = 236 bits (601), Expect = 4e-61 Identities = 129/367 (35%), Positives = 205/367 (55%), Gaps = 18/367 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVS--DASNYLLN 60 K RV +VFGG+S+EH +S+ +A ++ AID++R+DV+ +GI + G+W ++ + + Sbjct: 20 KPRVAVVFGGRSSEHGISVVTAGAVLAAIDRTRYDVLPIGITRDGRWALTADEPERMAIT 79 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQN-----GQPLPTVDVIFPIVHGTLGEDGS 115 + +T + + + L VDV+FP++HG GEDG+ Sbjct: 80 ERRTPDVEELAESTEGGVLLPVDPANREVVYSEPGSVPKALGEVDVVFPVLHGPYGEDGT 139 Query: 116 LQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR------HNI 169 LQG+L ++ +P+VG+ VLASA DK+ K + GL + P+ + Sbjct: 140 LQGLLELSGVPYVGAGVLASAVGQDKEYMKAVFTSYGLKVGPYAVIRPREWEQDRSGARK 199 Query: 170 SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 + + G PLFVKPA GSS+G++KV A++ A D K++VE ++GREI Sbjct: 200 KIVDFAGEHGWPLFVKPARAGSSIGITKVDDLAGLDEAIEEARRHDPKILVEAALRGREI 259 Query: 230 ECAVLGNDNPQASTCGEIVLT---SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIA 286 EC VL ++ ++ + +Y ++ KYI D +VPA + E +++ +A Sbjct: 260 ECGVLEFEDGPRASVPAEIPPPSEHAYYDFEAKYI--DSTPGIVPAPLTAEETAEVQRLA 317 Query: 287 VQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 V A+ C G+ R D FLT ++E VINEINT+PGFT ISMYP++WQASG+ Y +L+ RL Sbjct: 318 VAAFDAASCEGLVRADFFLTEDDEFVINEINTMPGFTPISMYPQMWQASGVSYPELVDRL 377 Query: 347 IELALER 353 ++ AL R Sbjct: 378 VQAALRR 384 >gb|AAF57199.1| (AE003779) CG2118 gene product [Drosophila melanogaster] Length = 684 Score = 235 bits (599), Expect = 6e-61 Identities = 53/345 (15%), Positives = 110/345 (31%), Gaps = 23/345 (6%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHE 84 + I + +R ++ I + V + + + H L + + + Sbjct: 25 RPISKILISNRGEIACRVIRTARKLGVRTVAVFSDPDEKSMHTQLADESYRVGEAASSAS 84 Query: 85 HQ-LIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + + I P +G L E + + + F+G A K Sbjct: 85 YLRGERILDIAKRSGAQAIHPG-YGFLSESVEFAELCQREGIIFMGPPSSAIRDMGIKST 143 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 +K ++ AG+ I ++ + K+G PL +K G G+ + Sbjct: 144 SKAIMAAAGVPIINGYHGD--DQSDECLQREADKIGFPLMIKAVRGGGGKGMRIAEKPDD 201 Query: 204 YAIAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 + A++ A D V++E+ ++ R +E V + A E Sbjct: 202 FLTALNSARTESEKSFGDSSVLLERYVRSPRHVEVQVFADQYGDAVYLWERD--CSVQRR 259 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINE 315 K I+E ++ ++ ++ AV+A + +G G V+ L E+ E Sbjct: 260 HQKIIEE-----APAPGLSEDLRRELGEAAVRAAKAVGYVGAGTVEFILDKEDLSFHFME 314 Query: 316 INTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 +NT + P +G + R+ Sbjct: 315 MNTRLQVEH----PITEMITGTDLVEWQIRIAAGEPLPLKQSEIT 355 >ref|NP_277017.1| (NC_000916) biotin carboxylase [Methanothermobacter thermautotrophicus] sp|O27939|PYCA_METTH PYRUVATE CARBOXYLASE SUBUNIT A (PYRUVIC CARBOXYLASE A) pir||A69123 biotin carboxylase - Methanobacterium thermoautotrophicum (strain Delta H) gb|AAB86377.1| (AE000942) biotin carboxylase [Methanothermobacter thermautotrophicus] Length = 491 Score = 235 bits (599), Expect = 6e-61 Identities = 52/343 (15%), Positives = 119/343 (34%), Gaps = 23/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA-QVPGKHE 84 + +R ++ + + + + + Y + A + P + Sbjct: 1 MFSKILVANRGEIAIRVMRACRELGIKSVAVYSEADKNALFTRYADEAYEIGKPAPSQSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 ++ + I P +G L E+ L + +G A DK + Sbjct: 61 LRIDRILEVAEKAGAEAIHPG-YGFLAENPRLGEECEKQGIKLIGPKGSVIEAMGDKITS 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K+L++ AG+ + P ++ A + +G P+ +K + G +G+ V E++ Sbjct: 120 KKLMKKAGVPVIPGTDQGVSDPDE--AARIADSIGYPVIIKASAGGGGIGMRAVYEEDEL 177 Query: 205 AIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A++ + D V +E+ ++ R IE V+ +++ + Sbjct: 178 IRAMESTQSVAASAFGDPTVYIEKYLERPRHIEFQVMADESGNVIHLADR--ECSIQRRH 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E + PE+ +++ + AV+A + +G V+ + + E+N Sbjct: 236 QKLIEE-----APSPIMTPELRERMGSAAVKAAEYIGYENAGTVEFLYS-NGDFYFLEMN 289 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P +G+ R+ R + Sbjct: 290 TRIQVEH----PITEVITGVDLVKEQIRVASGEELRFTQKDIN 328 >ref|NP_437988.1| (NC_003078) putative propionyl-CoA carboxylase alpha chain protein [Sinorhizobium meliloti] emb|CAC49848.1| (AL603647) putative propionyl-CoA carboxylase alpha chain protein [Sinorhizobium meliloti] Length = 670 Score = 234 bits (598), Expect = 8e-61 Identities = 58/344 (16%), Positives = 116/344 (32%), Gaps = 22/344 (6%) Query: 24 AKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKH 83 + +R ++ I + + Y D H+ + A + P Sbjct: 2 GHMFKKILIANRGEIACRVIRTTKALGIPTVAVYSDADRDAMHVRMADEAVHIGPSPSSQ 61 Query: 84 EH-QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKD 142 + + + D + P +G L E+ + L + F+G V A A DK Sbjct: 62 SYIVIENILAAIRRTGADAVHPG-YGFLSENAAFAEALEKDGVTFIGPPVRAIEAMGDKI 120 Query: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEE 202 +K+L +AG+ P + A + +++G P+ +K + G G+ +E Sbjct: 121 TSKKLAAEAGVFTVPGHMGLIEDADE--AARIAAEIGFPVMIKASAGGGGKGMRIAWNER 178 Query: 203 QYAIAVDLAF------EFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYA 255 + + D ++ +E+ + + R IE VLG+ + GE Sbjct: 179 EAREGFQSSRNEAKSSFGDDRIFIEKFVTEPRHIEIQVLGDKHGNILYLGER--ECSIQR 236 Query: 256 YDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINE 315 + K I+E + + + AV + +G V+ + E Sbjct: 237 RNQKVIEE-----APSPFLDEKTRRAMGEQAVALAKAVGYHSAGTVEFIVDAGRNFYFLE 291 Query: 316 INTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 +NT + P +GL + + R+ A A + Sbjct: 292 MNTRLQVEH----PVTELVTGLDLVEQMIRVAAGAKLAFAQKDV 331 >ref|NP_534077.1| (NC_003305) propionyl-coenzyme A carboxylase, alpha polypeptide [Agrobacterium tumefaciens str. C58 (U. Washington)] gb|AAL44393.1| (AE009288) propionyl-coenzyme A carboxylase, alpha polypeptide [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 677 Score = 233 bits (595), Expect = 2e-60 Identities = 57/329 (17%), Positives = 116/329 (34%), Gaps = 22/329 (6%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHE 84 + I + +R ++ I + ++ + Y + H+ + A + P Sbjct: 10 RMIKKILIANRGEIACRVIKTAKKMGIATVAVYSDADANALHVKMADEAVHIGPAPSSQS 69 Query: 85 H-QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + + D + P +G L E+ + L A + F+G V A A DK Sbjct: 70 YIVIDKILEAIQKTGADAVHPG-YGFLSENAAFAQALEKAGVVFIGPPVGAIEAMGDKIT 128 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 +K+L AG++ P + ++ S++G P+ +K + G G+ +E + Sbjct: 129 SKKLAAKAGVSTVPGHMGLIEDADE--AVKIASQIGYPVMIKASAGGGGKGMRIAFNEAE 186 Query: 204 YAIAVDLAF------EFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 + D ++ +E+ + + R IE VLG+ + GE Sbjct: 187 AREGFQSSKNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDKHGTILYLGER--ECSIQRR 244 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEI 316 + K I+E + + AV + +G V+ + E E+ Sbjct: 245 NQKVIEE-----APSPFLDEATRHAMGEQAVALARAVGYHSAGTVEFIVDGERNFYFLEM 299 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITR 345 NT + P +G+ + + R Sbjct: 300 NTRLQVEH----PVTELVTGIDLVEQMIR 324 >ref|NP_440997.1| (NC_000911) D-alanine:D-alanine ligase-related protein [Synechocystis sp. PCC 6803] sp|P73632|DDL_SYNY3 D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||S77119 D-alanine--D-alanine ligase (EC 6.3.2.4) A - Synechocystis sp. (strain PCC 6803) dbj|BAA17677.1| (D90908) D-alanine:D-alanine ligase-related protein [Synechocystis sp. PCC 6803] Length = 354 Score = 233 bits (594), Expect = 2e-60 Identities = 137/356 (38%), Positives = 204/356 (56%), Gaps = 27/356 (7%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAI----DKSRFDVVLLGIDKQGQWHVSDASNYLL 59 +RVG++FGG S EHEVS++SA+ I A+ +++++ V I K G W D S Sbjct: 1 MRVGLLFGGCSGEHEVSIKSAQAIAKALASDDNQTKYQVSPFYIQKNGVWLGPDVSQ--- 57 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 + P + + V FPI+HG GEDG++QG+ Sbjct: 58 --------QVLDQGVPWGDQPVTAGQRWQFPPEAARME---VWFPILHGPNGEDGTVQGL 106 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHN------ISFAE 173 + +P+VGS VL S MDK K + AGL ++ + R + + Sbjct: 107 FSLMQVPYVGSGVLGSCVGMDKLAMKMVFERAGLPQVNYMGVERGEIWSNPCVFPALCEK 166 Query: 174 VESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGI-KGREIECA 232 +E+++G P FVKPAN GSSVG++KV + + A+D A +D ++IVE G+ RE+ECA Sbjct: 167 IEAQVGYPCFVKPANLGSSVGIAKVRNRSELEAALDNAASYDRRIIVEAGLTDIREVECA 226 Query: 233 VLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 VLGN+NPQAS GEI SDFY Y+TKY D ++ +PA + + ++I+ +A+QA++ Sbjct: 227 VLGNENPQASVVGEITYDSDFYDYETKYTDGRS-QMHIPANLPKAVVNQIQTMAIQAFKA 285 Query: 293 LGCAGMARVDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 + AG+ R+D F P ++VINEINTLPGFT SMYP+LW+ASG+ + L+ RL+ Sbjct: 286 VDAAGLGRLDFFYQPTTGQIVINEINTLPGFTAFSMYPELWRASGVEFPSLVDRLL 341 >gb|AAG45427.1|AF317651_4 (AF317651) pyruvate carboxylase ATP-binding subunit PYCA [Methanosarcina barkeri] Length = 493 Score = 232 bits (592), Expect = 4e-60 Identities = 49/343 (14%), Positives = 109/343 (31%), Gaps = 23/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HE 84 + +R ++ + + + +S + + A + P Sbjct: 1 MFKKVLIANRGEIAIRVMRACRELGISTVAVCSEADKNALFAKYADEAYLIGPAPSSQSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + I P +G L E+ + F+G A K Sbjct: 61 LNMEAILAVAKNTGAEAIHPG-YGFLSENPVFAKRCEEEGIVFIGPPSHVIAEMGSKIRA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + L+ AG+ + P + ++ ++G P+ +K + G +G+ V S +++ Sbjct: 120 RNLMVKAGVPVVPGTKDAVEDPVE--AVKIAEEIGYPVLIKASAGGGGIGMKVVNSSDEF 177 Query: 205 AIAVDL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A+ + D V +E+ + + R IE +L + + Sbjct: 178 ATALSSTRQMAGSAFGDSSVFIEKYVEEPRHIEIQILADGYGNTIYLSDR--ECSIQRRH 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E + PE+ K+ AV+ +T+G V+ + E+N Sbjct: 236 QKLIEE-----APSPIMTPELRAKMGEAAVRVAKTIGYVNAGTVEFLYSK-GNFYFLEVN 289 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + +G+ R+ ++ + Sbjct: 290 TRLQVEHG----ITEMVTGIDIVREQLRIAWGKKLEFKQEDIV 328 >ref|NP_357031.1| (NC_003063) AGR_L_580GMp [Agrobacterium tumefaciens] [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAK89816.1| (AE008324) AGR_L_580GMp [Agrobacterium tumefaciens str. C58 (Cereon)] Length = 667 Score = 232 bits (591), Expect = 5e-60 Identities = 57/328 (17%), Positives = 115/328 (34%), Gaps = 22/328 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 I + +R ++ I + ++ + Y + H+ + A + P + Sbjct: 1 MIKKILIANRGEIACRVIKTAKKMGIATVAVYSDADANALHVKMADEAVHIGPAPSSQSY 60 Query: 86 -QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D + P +G L E+ + L A + F+G V A A DK + Sbjct: 61 IVIDKILEAIQKTGADAVHPG-YGFLSENAAFAQALEKAGVVFIGPPVGAIEAMGDKITS 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K+L AG++ P + ++ S++G P+ +K + G G+ +E + Sbjct: 120 KKLAAKAGVSTVPGHMGLIEDADE--AVKIASQIGYPVMIKASAGGGGKGMRIAFNEAEA 177 Query: 205 AIAVDLAF------EFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + D ++ +E+ + + R IE VLG+ + GE + Sbjct: 178 REGFQSSKNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDKHGTILYLGER--ECSIQRRN 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E + + AV + +G V+ + E E+N Sbjct: 236 QKVIEE-----APSPFLDEATRHAMGEQAVALARAVGYHSAGTVEFIVDGERNFYFLEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITR 345 T + P +G+ + + R Sbjct: 291 TRLQVEH----PVTELVTGIDLVEQMIR 314 >ref|NP_520908.1| (NC_003295) PROBABLE BIOTIN CARBOXYLASE PROTEIN [Ralstonia solanacearum] emb|CAD16494.1| (AL646071) PROBABLE BIOTIN CARBOXYLASE PROTEIN [Ralstonia solanacearum] Length = 456 Score = 231 bits (590), Expect = 6e-60 Identities = 54/343 (15%), Positives = 106/343 (30%), Gaps = 22/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 + +R ++ L + + Y + ++ L A + P Sbjct: 1 MFDKILIANRGEIALRIQRACRELGIKTVVVYSEADKEAKYVKLADEAVCIGPAPSPLSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + I P +G L E+ + + F+G DK Sbjct: 61 LNMPAIISAAEVTDAQAIHPG-YGFLSENADFAERVEQSGFTFIGPTPDCIRLMGDKVSA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K+ + +G+ P + K+G P+ +K A G G+ V +E Sbjct: 120 KQAMIKSGVPCVPGSEGALPDDPKE-ILATARKVGYPVIIKAAGGGGGRGMRVVHTEAAL 178 Query: 205 AIAVDLA------FEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 AV++ + +V +E+ + R +E VL + + A GE Sbjct: 179 INAVNMTREEAGRAFGNPEVYMEKFLENPRHVEIQVLADQHRNAIWLGERD--CSMQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E I + ++I A + +G G + E E+N Sbjct: 237 QKVIEE-----APAPHIPRRLIERIGDRCADACKKIGYRGAGTFEFLY-ENGEFYFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P +G+ R+ R + + Sbjct: 291 TRVQVEH----PVTEMITGIDIVQEQIRVAANEKLRFRQKDVV 329 >gb|AAH06915.1|AAH06915 (BC006915) Similar to Propionyl Coenzyme A carboxylase, alpha polypeptide [Mus musculus] Length = 724 Score = 231 bits (590), Expect = 7e-60 Identities = 56/342 (16%), Positives = 114/342 (32%), Gaps = 22/342 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKHEHQL 87 + +R ++ I + + + + H+ + A + P K + Sbjct: 61 KILIANRGEIACRVIKTCKKMGIKTVAIHSDVDASSVHVKMADEAVCVGPAPTSKSYLNM 120 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + P +G L E+ L ++ F+G D A A DK +K L Sbjct: 121 DAIMEAIKKTRAQAVHPG-YGFLSENKEFAKRLAAEDVTFIGPDTHAIQAMGDKIESKLL 179 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + A +N P + + ++G P+ +K + G G+ +E+ Sbjct: 180 AKRAKVNTIPGFDGVVKDADE--AVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDG 237 Query: 208 V----DLAF--EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A D ++++E+ I R IE VLG+ + A E + K Sbjct: 238 FRFSSQEAASSFGDDRLLIEKFIDNPRHIEIQVLGDKHGNALWLNER--ECSIQRRNQKV 295 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E + PE + AV + + + V+ + + E+NT Sbjct: 296 VEE-----APSIFLDPETRQAMGEQAVALAKAVKYSSAGTVEFLVDSQKNFYFLEMNTRL 350 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALKT 362 + P +GL + + + RH ++ + Sbjct: 351 QVEH----PVTECITGLDLVQEMILVAKGYPLRHKQEDIPIS 388 >ref|NP_253535.1| (NC_002516) biotin carboxylase [Pseudomonas aeruginosa] sp|P37798|ACCC_PSEAE BIOTIN CARBOXYLASE (A SUBUNIT OF ACETYL-COA CARBOXYLASE (ACC) pir||B49342 acetyl-CoA carboxylase (EC 6.4.1.2), biotin carboxylase - Pseudomonas aeruginosa pir||H83039 biotin carboxylase PA4848 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAA16041.1| (L14612) biotin carboxylase [Pseudomonas aeruginosa] gb|AAG08233.1|AE004898_4 (AE004898) biotin carboxylase [Pseudomonas aeruginosa] Length = 449 Score = 231 bits (588), Expect = 1e-59 Identities = 53/343 (15%), Positives = 109/343 (31%), Gaps = 22/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 + + +R ++ L + + + + + + H++L + + P + Sbjct: 1 MLEKVLIANRGEIALRILRACKELGIKTVAVHSTADRELMHLSLADESVCIGPAPATQSY 60 Query: 86 Q-LIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + I P +G L E+ + + FVG DK Sbjct: 61 LQIPAIIAAAEVTGATAIHPG-YGFLAENADFAEQIERSGFTFVGPTAEVIRLMGDKVSA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K ++ AG+ P + + ++G P+ +K A G G+ V E + Sbjct: 120 KDAMKRAGVPTVPGSDGPLPED-EETALAIAREVGYPVIIKAAGGGGGRGMRVVYDESEL 178 Query: 205 AIAVDL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + L A + V +E+ + R +E VL + A G+ Sbjct: 179 IKSAKLTRTEAGAAFGNPMVYLEKFLTNPRHVEVQVLSDGQGNAIHLGDRD--CSLQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E I + ++ A VQA +G G + E+N Sbjct: 237 QKVIEE-----APAPGIDEKARQEVFARCVQACIEIGYRGAGTFEFLY-ENGRFYFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P +G+ + R+ ++ + Sbjct: 291 TRVQVEH----PVSEMVTGVDIVKEMLRIASGEKLSIRQEDVV 329 >gb|AAL02364.1| (AY046947) propionyl CoA-carboxylase alpha-subunit [Mus musculus] Length = 724 Score = 230 bits (587), Expect = 2e-59 Identities = 56/342 (16%), Positives = 114/342 (32%), Gaps = 22/342 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKHEHQL 87 + +R ++ I + + + + H+ + A + P K + Sbjct: 61 KILIANRGEIACRVIKTCKKMGIKTVAIHSDVDASSVHVKMADEAVCVGPAPTSKSYLNM 120 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + P +G L E+ L ++ F+G D A A DK +K L Sbjct: 121 DAIMEAIKKTRAQAVHPG-YGFLSENKEFAKRLAAEDVTFIGPDTHAIQAMGDKIESKLL 179 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + A +N P + + ++G P+ +K + G G+ +E+ Sbjct: 180 AKRAKVNTIPGFDGVVKDADE--AVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDG 237 Query: 208 V----DLAF--EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A D ++++E+ I R IE VLG+ + A E + K Sbjct: 238 FRFSSQEAASSFGDDRLLIEKFIDNPRHIEIQVLGDKHGNALWLNER--ECSIQRRNQKV 295 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E + PE + AV + + + V+ + + E+NT Sbjct: 296 VEE-----APSIFLDPETRQAMGEQAVALAKAVKYSSAGTVEFLVDSQKNFYFLEMNTRL 350 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALKT 362 + P +GL + + + RH ++ + Sbjct: 351 QVEH----PVTECITGLDLVQEMILVAKGYPLRHKQEDIPIS 388 >ref|NP_296522.1| (NC_002620) UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase [Chlamydia muridarum] pir||B81737 UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase TC0143 [imported] - Chlamydia muridarum (strain Nigg) gb|AAF39021.1| (AE002281) UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase [Chlamydia muridarum] Length = 833 Score = 230 bits (586), Expect = 2e-59 Identities = 100/370 (27%), Positives = 169/370 (45%), Gaps = 30/370 (8%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +KL +G++ GG+S EH++S+ SA+NI + S ++V I ++G W + Sbjct: 476 KKLSLGLICGGRSCEHDISILSAQNIAKYLSHSFYEVQYFLITREGLWKTGSSLELSEET 535 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 L VDVI PI+HG GEDG++QG L Sbjct: 536 -----GKTIFDPEIAG-----------------KLSKVDVILPILHGPYGEDGAMQGFLE 573 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT---RANRHNISFAEVESKL 178 P+ G ++ +A M+K +TKR + D G+ + P++ LT A++++ Sbjct: 574 TIGKPYTGPSLVFAAIGMNKVLTKRFMSDLGIPVVPYLPLTLKGWKQDQEKCLAQIKAAF 633 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQ-GIKGREIECAVLGND 237 P+FVK + GSS+GV +V + A++ AF D V +E+ + REIE + LG+ Sbjct: 634 SFPMFVKSVHLGSSIGVFEVHDTNELRDAINEAFVRDDDVFIEESRLGCREIEVSFLGDG 693 Query: 238 NPQASTCG--EIVLTSDFYAYDTKY--IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 + G E F Y KY A++V ++ E +++ +A + Y+ L Sbjct: 694 SGVFFVAGMHERRGRGGFIDYQEKYGLSGRASAQIVFDVDLSKETREQLLGVAEKIYRLL 753 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G R+D F+ E ++EIN +PG T S + + G ++ +L+ L+R Sbjct: 754 QGKGSCRIDFFVDNEGSFWLSEINPIPGMTTASPFLAAFVRKGWNREQIVHQLVIDGLQR 813 Query: 354 HAADNALKTT 363 L +T Sbjct: 814 FDQRQRLIST 823 >ref|NP_293843.1| (NC_001263) acetyl-CoA carboxylase, biotin carboxylase subunit [Deinococcus radiodurans] pir||B75558 acetyl-CoA carboxylase, biotin carboxylase subunit - Deinococcus radiodurans (strain R1) gb|AAF09707.1|AE001874_4 (AE001874) acetyl-CoA carboxylase, biotin carboxylase subunit [Deinococcus radiodurans] Length = 445 Score = 229 bits (585), Expect = 2e-59 Identities = 52/344 (15%), Positives = 115/344 (33%), Gaps = 25/344 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA-QVPGKHE 84 + +R ++ L I + + Y + + L + + + Sbjct: 1 MFKKILIANRGEIALRVIRTAREMGIQTVVVYSTADEKSLPVLLADESVCVGPPASNQSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + + + I P +G + E+ M R + F+G + A K Sbjct: 61 LNIPNILSAALMTGAEAIHPG-YGFMAENPDFAEMCREHGIVFIGPTPESMRALGSKAGG 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + + + + P + + ++G P+ +K + G G + ++E+ Sbjct: 120 REIAAQSNVPTVPGTGVL---ESVDAALLAAKQIGYPVLLKASAGGGGRGQKVIRTQEEL 176 Query: 205 AIAVDLA------FEFDHKVIVEQGIKG-REIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + A + D +I+E+ ++ R IE V+G+ GE + Sbjct: 177 QKGFNQAQEEARLYFGDPAIIMEKFLEEFRHIEVQVMGDGQGHVIHIGERD--CSIQRRN 234 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E P+ + + +I A V+ Q + AG ++ + + E+N Sbjct: 235 QKLIEE------APSTLPESLRQEILAAGVRLAQFVNYAGAGTLEFIMDRDGNYYFMEMN 288 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALK 361 T + S L L I L + + +K Sbjct: 289 TRIQVEHCV----SEMISSLDLVRLQIE-IAAGLGLNIQQDDVK 327 >ref|NP_036876.1| (NM_012744) pyruvate carboxylase [Rattus norvegicus] sp|P52873|PYC_RAT Pyruvate carboxylase, mitochondrial precursor (Pyruvic carboxylase) (PCB) gb|AAA96256.1| (U32314) pyruvate carboxylase [Rattus norvegicus] Length = 1178 Score = 229 bits (584), Expect = 3e-59 Identities = 49/328 (14%), Positives = 101/328 (29%), Gaps = 23/328 (7%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSL--AQVPGKHE 84 I + +R ++ + + + + Y H A + P + Sbjct: 37 IKKVMVANRGEIAIRVFRACTELGIRTVAVYSEQDTGQMHRQKADEAYLIGRGLAPVQAY 96 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D VD + P +G L E + A + F+G DK Sbjct: 97 LHIPDIIKVAKENGVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEA 155 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + + AG+ + P E + G P+ K A G G+ V S E+ Sbjct: 156 RAIAIAAGVPVVPGT--NSPINSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEEL 213 Query: 205 AIAV------DLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 LA + + VE+ I+ R IE +LG+ E Sbjct: 214 EENYTRAYPEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERD--CSIQRRH 271 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ + + P++ ++ + +V+ + +G V+ + + E+N Sbjct: 272 QKVVE-----IAPATHLDPQLRSRLTSDSVKLAKQVGYENAGTVEFLVDKHGKHYFIEVN 326 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITR 345 + + + + + Sbjct: 327 SRLQVEHTV----TEEITDVDLVHAQIH 350 >pir||S68252 pyruvate carboxylase (EC 6.4.1.1) precursor - rat pir||JC4391 pyruvate carboxylase (EC 6.4.1.1) precursor - rat gb|AAC52668.1| (U36585) pyruvate carboxylase [Rattus norvegicus] Length = 1178 Score = 229 bits (584), Expect = 3e-59 Identities = 49/328 (14%), Positives = 101/328 (29%), Gaps = 23/328 (7%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSL--AQVPGKHE 84 I + +R ++ + + + + Y H A + P + Sbjct: 37 IKKVMVANRGEIAIRVFRACTELGIRTVAVYSEQDTGQMHRQKADEAYLIGRGLAPVQAY 96 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D VD + P +G L E + A + F+G DK Sbjct: 97 LHIPDIIKVAKENGVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEA 155 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + + AG+ + P E + G P+ K A G G+ V S E+ Sbjct: 156 RAIAIAAGVPVVPGT--NSPINSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEEL 213 Query: 205 AIAV------DLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 LA + + VE+ I+ R IE +LG+ E Sbjct: 214 EENYTRAYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERD--CSIQRRH 271 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ + + P++ ++ + +V+ + +G V+ + + E+N Sbjct: 272 QKVVE-----IAPATHLDPQLRSRLTSDSVKLAKQVGYENAGTVEFLVDKHGKHYFIEVN 326 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITR 345 + + + + + Sbjct: 327 SRLQVEHTV----TEEITDVDLVHAQIH 350 >ref|NP_539644.1| (NC_003317) D-ALANINE--D-ALANINE LIGASE A [Brucella melitensis] gb|AAL51908.1| (AE009514) D-ALANINE--D-ALANINE LIGASE A [Brucella melitensis] Length = 366 Score = 229 bits (584), Expect = 3e-59 Identities = 146/355 (41%), Positives = 222/355 (62%), Gaps = 12/355 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K+R+ ++FGG+SAEH+VS+ SA N+++A+D ++++ V + + + GQW +S N L Sbjct: 18 KMRIVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKP 77 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + L + DA +D+IFP++HG GEDG++QG+ +V Sbjct: 78 SSG------AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQV 131 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 A +P G + SA +DKD+ KRL+ +AGL+ A +T+TR +F+ +E LGLP+ Sbjct: 132 ARVPLAGCGIPGSANALDKDIAKRLVNEAGLSTAKSVTITREE--VPAFSALEQALGLPI 189 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP--Q 240 F+KPA QGSSVGV KV +E Y A+ F +D K++ E+ I+ RE+EC VL ++ Sbjct: 190 FIKPARQGSSVGVHKVVTEADYQAAMSDGFIYDDKLLAEEFIQAREVECGVLEDEGGALF 249 Query: 241 ASTCGEIVLTSD--FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 S GEIV FY+YD KYID DG ++ VPA + ++ ++IRAIA +A++ LGC M Sbjct: 250 VSRAGEIVPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSM 309 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 ARVD F+T + +V+NEINT+PGFT++SMY K+ SG+ Y ++I RL+ L R Sbjct: 310 ARVDFFVTADRRIVLNEINTIPGFTDMSMYFKVMAVSGVSYPEIINRLVAHGLAR 364 >gb|AAL27442.1|AF430807_7 (AF430807) VanE [Enterococcus faecalis] Length = 352 Score = 229 bits (584), Expect = 3e-59 Identities = 110/354 (31%), Positives = 198/354 (55%), Gaps = 8/354 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 V I+FGG S+E+EVSL+SA I+ ++ ++V+ +GI ++G W++ + + + D Sbjct: 2 KTVAIIFGGVSSEYEVSLKSAVAIIKNMESIDYNVMKIGITEEGHWYLFEGTTDKIKKDR 61 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 L S + K +N + + D++FP++HG GE+G++QG+ + Sbjct: 62 WF---LDESCEEIVVDFAKKS---FVLKNSKKIIKPDILFPVLHGGYGENGAMQGVFELL 115 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 ++P+VG + A+A M+K + + G+ P + + + G PL+ Sbjct: 116 DIPYVGCGIGAAAISMNKIMLHQFAEAIGVKSTPSMIIEKGQDLQK-VDAFAKIHGFPLY 174 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 +KP GSS G+SKV + A+D A ++D ++++++ +KG EI C +LGN+ Sbjct: 175 IKPNEAGSSKGISKVERKSDLYKAIDEASKYDSRILIQKEVKGVEIGCGILGNEQLVVGE 234 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 C +I L F+ Y+ KY + A++++PA ++ + + I+ A + Y+ LGC G+AR+D Sbjct: 235 CDQISLVDGFFDYEEKY-NLVTAEILLPAKLSIDKKEDIQMKAKKLYRLLGCKGLARIDF 293 Query: 304 FLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 FLT + E+++NEINT+PGFT S +P + G+ Y ++I L+ LA+E H Sbjct: 294 FLTDDGEILLNEINTMPGFTEHSRFPMMMNEIGMDYKEIIENLLVLAVENHEKK 347 >pir||T06360 methylcrotonoyl-CoA carboxylase (EC 6.4.1.4) biotin carboxylase chain - soybean Length = 731 Score = 229 bits (584), Expect = 3e-59 Identities = 53/324 (16%), Positives = 108/324 (32%), Gaps = 23/324 (7%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HEH 85 I + +R ++ + + + Y D H+A A + P + Sbjct: 33 IEKILVANRGEIACRITRTARRLGIQTVAVYSDADRDSLHVATADEAIRIGPPPARLSYL 92 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + I P +G L E + + L F+G A DK +K Sbjct: 93 NGASIVDAAIRSGAQAIHPG-YGFLSESADFAKLCEESGLTFIGPPASAIRDMGDKSASK 151 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 R++ AG+ + P ++ ++G P+ +KP + G G+ V + +++ Sbjct: 152 RIMGAAGVPLVPGYHGY--DQDIEKMKLEADRIGYPVLIKPTHGGGGKGMRIVHTPDEFV 209 Query: 206 IAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 + A + +++E+ I + R IE + G+ + E Sbjct: 210 ESFLAAQREAAASFGVNTILLEKYITRPRHIEVQIFGDKHGNVLHLYERD--CSVQRRHQ 267 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTP-ENEVVINEIN 317 K I+E I+ + ++ AV A + + V+ + +E E+N Sbjct: 268 KIIEE-----APAPNISADFRAQLGVAAVSAAKAVNYYNAGTVEFIVDTVSDEFYFMEMN 322 Query: 318 TLPGFTNISMYPKLWQASGLGYTD 341 T + P G + Sbjct: 323 TRLQVEH----PVTEMIVGQDLVE 342 >pdb|1EHI|A Chain A, D-Alanine:d-Lactate Ligase (Lmddl2) Of Vancomycin-Resistant Leuconostoc Mesenteroides pdb|1EHI|B Chain B, D-Alanine:d-Lactate Ligase (Lmddl2) Of Vancomycin-Resistant Leuconostoc Mesenteroides Length = 377 Score = 229 bits (584), Expect = 4e-59 Identities = 125/369 (33%), Positives = 209/369 (55%), Gaps = 13/369 (3%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSR-FDVVLLGIDKQGQWHVSDASNYLL 59 M K RV ++FGG S+EH+VS +SA+N +AI+ + +++++ I + G + +++S +L Sbjct: 1 MTKKRVALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKIL 60 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 +D I T L + D+ FP+VHG LGEDG+LQG+ Sbjct: 61 ALEDEQPIVDAFMKTV------DASDPLARIHALKSAGDFDIFFPVVHGNLGEDGTLQGL 114 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ + P+VG+ + A DK +TK LL G+ +I + + +N S+ ++ ++LG Sbjct: 115 FKLLDKPYVGAPLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELG 174 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGNDN 238 +FVK ANQGSSVG+S+VT+ E+Y A+ +F++D+KV++E+ + G RE+E V+GND Sbjct: 175 NIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVNGARELEVGVIGNDQ 234 Query: 239 PQASTCGEIVLT-----SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 P S G + +Y Y+ K++D +PA ++PE+ +++ +A+ AY+ L Sbjct: 235 PLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQLSPEVTKEVKQMALDAYKVL 294 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G AR+D L N + E NTLPGFTN+S++ +LW S + L+ LI+ E Sbjct: 295 NLRGEARMDFLLDENNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLIDYGFED 354 Query: 354 HAADNALKT 362 A + L Sbjct: 355 FAQNKKLSY 363 >sp|Q9PLG1|MUDD_CHLMU MURC/DDL BIFUNCTIONAL ENZYME [INCLUDES: UDP-N-ACETYLMURAMATE--ALANINE LIGASE (UDP-N-ACETYLMURAMOYL-L-ALANINE SYNTHETASE); D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE)] Length = 802 Score = 229 bits (584), Expect = 4e-59 Identities = 100/370 (27%), Positives = 169/370 (45%), Gaps = 30/370 (8%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +KL +G++ GG+S EH++S+ SA+NI + S ++V I ++G W + Sbjct: 445 KKLSLGLICGGRSCEHDISILSAQNIAKYLSHSFYEVQYFLITREGLWKTGSSLELSEET 504 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 L VDVI PI+HG GEDG++QG L Sbjct: 505 -----GKTIFDPEIAG-----------------KLSKVDVILPILHGPYGEDGAMQGFLE 542 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT---RANRHNISFAEVESKL 178 P+ G ++ +A M+K +TKR + D G+ + P++ LT A++++ Sbjct: 543 TIGKPYTGPSLVFAAIGMNKVLTKRFMSDLGIPVVPYLPLTLKGWKQDQEKCLAQIKAAF 602 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQ-GIKGREIECAVLGND 237 P+FVK + GSS+GV +V + A++ AF D V +E+ + REIE + LG+ Sbjct: 603 SFPMFVKSVHLGSSIGVFEVHDTNELRDAINEAFVRDDDVFIEESRLGCREIEVSFLGDG 662 Query: 238 NPQASTCG--EIVLTSDFYAYDTKY--IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 + G E F Y KY A++V ++ E +++ +A + Y+ L Sbjct: 663 SGVFFVAGMHERRGRGGFIDYQEKYGLSGRASAQIVFDVDLSKETREQLLGVAEKIYRLL 722 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G R+D F+ E ++EIN +PG T S + + G ++ +L+ L+R Sbjct: 723 QGKGSCRIDFFVDNEGSFWLSEINPIPGMTTASPFLAAFVRKGWNREQIVHQLVIDGLQR 782 Query: 354 HAADNALKTT 363 L +T Sbjct: 783 FDQRQRLIST 792 >ref|NP_000273.1| (NM_000282) Propionyl-Coenzyme A carboxylase, alpha polypeptide precursor [Homo sapiens] ref|XP_049016.1| (XM_049016) Propionyl-Coenzyme A carboxylase, alpha polypeptide precursor [Homo sapiens] sp|P05165|PCCA_HUMAN PROPIONYL-COA CARBOXYLASE ALPHA CHAIN, MITOCHONDRIAL PRECURSOR (PCCASE ALPHA SUBUNIT) (PROPANOYL-COA:CARBON DIOXIDE LIGASE ALPHA SUBUNIT) pir||A27883 propionyl-CoA carboxylase (EC 6.4.1.3) alpha chain precursor - human emb|CAA32763.1| (X14608) propionyl-CoA carboxylase [Homo sapiens] gb|AAH00140.1|AAH00140 (BC000140) propionyl Coenzyme A carboxylase, alpha polypeptide [Homo sapiens] Length = 703 Score = 229 bits (583), Expect = 4e-59 Identities = 56/340 (16%), Positives = 112/340 (32%), Gaps = 22/340 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKHEHQL 87 + +R ++ I + + + + H+ + A + P K + Sbjct: 40 KILVANRGEIACRVIRTCKKMGIKTVAIHSDVDASSVHVKMADEAVCVGPAPTSKSYLNM 99 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + P +G L E+ L ++ F+G D A A DK +K L Sbjct: 100 DAIMEAIKKTRAQAVHPG-YGFLSENKEFARCLAAEDVVFIGPDTHAIQAMGDKIESKLL 158 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + A +N P + + ++G P+ +K + G G+ +E+ Sbjct: 159 AKKAEVNTIPGFDGVVKD--AEEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDG 216 Query: 208 V----DLAF--EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A D ++++E+ I R IE VLG+ + A E + K Sbjct: 217 FRLSSQEAASSFGDDRLLIEKFIDNPRHIEIQVLGDKHGNALWLNER--ECSIQRRNQKV 274 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E + E + AV + + + V+ + + E+NT Sbjct: 275 VEE-----APSIFLDAETRRAMGEQAVALARAVKYSSAGTVEFLVDSKKNFYFLEMNTRL 329 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + P +GL + R+ + RH + Sbjct: 330 QVEH----PVTECITGLDLVQEMIRVAKGYPLRHKQADIR 365 >gb|AAB31500.1| (S72370) pyruvate carboxylase; pyruvate:carbon dioxide ligase [Homo sapiens] Length = 1178 Score = 229 bits (583), Expect = 4e-59 Identities = 50/331 (15%), Positives = 103/331 (31%), Gaps = 23/331 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSL--AQVPGKHE 84 I + +R ++ + + + + Y H A + P + Sbjct: 37 IKKVMVANRGEIAIRVFRACTELGIRTVAIYSEQDTGQMHRQKADEAYLIGRGLAPVQAY 96 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D VD + P +G L E + A + F+G DK Sbjct: 97 LHIPDIIKVAKENNVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEA 155 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + + AG+ + P E + G P+ K A G G+ V S E+ Sbjct: 156 RAIAIAAGVPVVPGTDAPIT--SLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEEL 213 Query: 205 AIAVDLA------FEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A + + VE+ I+ R IE +LG+ E Sbjct: 214 EENYTRAYSEAWPAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERD--CSIQRRH 271 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ + A + P++ ++ + +V+ + +G V+ + + E+N Sbjct: 272 QKVVE-----IAPAAHLDPQLRTRLTSDSVKLAKQVGYENAGTVEFLVDRHGKHYFIEVN 326 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 + + + + + + E Sbjct: 327 SRLQVEHTV----TEEITDVDLVHAQIHVAE 353 >ref|NP_000911.1| (NM_000920) pyruvate carboxylase precursor [Homo sapiens] ref|NP_071504.1| (NM_022172) pyruvate carboxylase precursor [Homo sapiens] pir||G01933 pyruvate carboxylase (EC 6.4.1.1) precursor - human pir||JC2460 pyruvate carboxylase (EC 6.4.1.1) precursor - human gb|AAA82937.1| (U30891) pyruvate carboxylase precursor [Homo sapiens] Length = 1178 Score = 229 bits (583), Expect = 4e-59 Identities = 50/328 (15%), Positives = 102/328 (30%), Gaps = 23/328 (7%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSL--AQVPGKHE 84 I + +R ++ + + + + Y H A + P + Sbjct: 37 IKKVMVANRGEIAIRVFRACTELGIRTVAIYSEQDTGQMHRQKADEAYLIGRGLAPVQAY 96 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D VD + P +G L E + A + F+G DK Sbjct: 97 LHIPDIIKVAKENNVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEA 155 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + + AG+ + P E + G P+ K A G G+ V S E+ Sbjct: 156 RAIAIAAGVPVVPGTDAPIT--SLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEEL 213 Query: 205 AIAV------DLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 LA + + VE+ I+ R IE +LG+ E Sbjct: 214 EENYTRAYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERD--CSIQRRH 271 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ + A + P++ ++ + +V+ + +G V+ + + E+N Sbjct: 272 QKVVE-----IAPAAHLDPQLRTRLTSDSVKLAKQVGYENAGTVEFLVDRHGKHYFIEVN 326 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITR 345 + + + + + Sbjct: 327 SRLQVEHTV----TEEITDVDLVHAQIH 350 >sp|P11498|PYC_HUMAN Pyruvate carboxylase, mitochondrial precursor (Pyruvic carboxylase) (PCB) gb|AAA99537.1| (U04641) pyruvate: carbon-dioxide ligase (ADP-forming) [Homo sapiens] gb|AAH11617.1|AAH11617 (BC011617) pyruvate carboxylase [Homo sapiens] prf||2023166A pyruvate carboxylase [Homo sapiens] Length = 1178 Score = 229 bits (583), Expect = 4e-59 Identities = 51/331 (15%), Positives = 104/331 (31%), Gaps = 23/331 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSL--AQVPGKHE 84 I + +R ++ + + + + Y H A + P + Sbjct: 37 IKKVMVANRGEIAIRVFRACTELGIRTVAIYSEQDTGQMHRQKADEAYLIGRGLAPVQAY 96 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D VD + P +G L E + A + F+G DK Sbjct: 97 LHIPDIIKVAKENNVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEA 155 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + + AG+ + P E + G P+ K A G G+ V S E+ Sbjct: 156 RAIAIAAGVPVVPGTDAPIT--SLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEEL 213 Query: 205 AIAV------DLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 LA + + VE+ I+ R IE +LG+ E Sbjct: 214 EENYTRAYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERD--CSIQRRH 271 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ + A + P++ ++ + +V+ + +G V+ + + E+N Sbjct: 272 QKVVE-----IAPAAHLDPQLRTRLTSDSVKLAKQVGYENAGTVEFLVDRHGKHYFIEVN 326 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 + + + + + + E Sbjct: 327 SRLQVEHTV----TEEITDVDLVHAQIHVAE 353 >ref|NP_032823.1| (NM_008797) pyruvate decarboxylase [Mus musculus] sp|Q05920|PYC_MOUSE Pyruvate carboxylase, mitochondrial precursor (Pyruvic carboxylase) (PCB) pir||A47255 pyruvate carboxylase (EC 6.4.1.1) precursor [similarity] - mouse gb|AAA39737.1| (L09192) pyruvate carboxylase [Mus musculus] Length = 1178 Score = 229 bits (583), Expect = 4e-59 Identities = 49/328 (14%), Positives = 101/328 (29%), Gaps = 23/328 (7%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSL--AQVPGKHE 84 I + +R ++ + + + + Y H A + P + Sbjct: 37 IKKVMVANRGEIAIRVFRACTELGIRTVAVYSEQDTGQMHRQKADEAYLIGRGLAPVQAY 96 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D VD + P +G L E + A + F+G DK Sbjct: 97 LHIPDIIKVAKENGVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEA 155 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + + AG+ + P E + G P+ K A G G+ V S E+ Sbjct: 156 RAIAIAAGVPVVPGTD--SPISSLHEAHEFSNTFGFPIIFKAAYGGGGRGMRVVHSYEEL 213 Query: 205 AIAV------DLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 LA + + VE+ I+ R IE +LG+ E Sbjct: 214 EENYTRAYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERD--CSIQRRH 271 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ + + P++ ++ + +V+ + +G V+ + + E+N Sbjct: 272 QKVVE-----IAPATHLDPQLRSRLTSDSVKLAKQVGYENAGTVEFLVDKHGKHYFIEVN 326 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITR 345 + + + + + Sbjct: 327 SRLQVEHTV----TEEITDVDLVHAQIH 350 >ref|NP_248224.1| (NC_000909) biotin carboxylase (accC) [Methanococcus jannaschii] sp|Q58626|PYCA_METJA PYRUVATE CARBOXYLASE SUBUNIT A (PYRUVIC CARBOXYLASE A) pir||D64453 biotin carboxylase (EC 6.3.4.14) - Methanococcus jannaschii gb|AAB99232.1| (U67563) biotin carboxylase (accC) [Methanococcus jannaschii] Length = 501 Score = 228 bits (582), Expect = 5e-59 Identities = 58/342 (16%), Positives = 118/342 (33%), Gaps = 23/342 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKHE 84 + +R ++ + I + + + Y H L A + P K Sbjct: 1 MFNKVLIANRGEIAIRIIRACWELGIKTVAVYSEADKRSLHATLADEAYCIGPAPAAKSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + N VD I P +G L E+ ++ A F+G + A A K Sbjct: 61 LNIDAILNVAEKAKVDAIHPG-YGFLAENAEFARAVKKAGFEFIGPNPDAIEAMGSKINA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K++++ AG+ + P + E+ +G P+ VK + G +G+S S+E+ Sbjct: 120 KKIMKKAGVPLIPGSEGAIEDIDE--AIEIAEAIGFPVVVKASAGGGGMGMSVAYSKEEL 177 Query: 205 AIAVDLA------FEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 ++ A D V +E+ + R IE +LG+ + G+ Sbjct: 178 KEVIESARNIAKSAFGDPTVFIEKYLENPRHIEIQLLGDKHGNIIHLGDR--ECSIQRRH 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E + E+ +++ A++A + + V+ E+N Sbjct: 236 QKLIEE-----APSPIMTEELRERMGEAAIKAGKAINYDSAGTVEFLY-ENGNFYFLEMN 289 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 T + Q +G+ + ++ ++ Sbjct: 290 TRIQVEHTV----TEQVTGIDLVKAMIKIAAGEELTLKQEDV 327 >ref|NP_102581.1| (NC_002678) propionyl-CoA carboxylase alpha chain precursor [Mesorhizobium loti] dbj|BAB48367.1| (AP002996) propionyl-CoA carboxylase alpha chain precursor [Mesorhizobium loti] Length = 670 Score = 228 bits (582), Expect = 6e-59 Identities = 50/342 (14%), Positives = 108/342 (30%), Gaps = 22/342 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 + +R ++ I + ++ + Y D H+ + A + P + Sbjct: 1 MFTKILIANRGEIACRVIKTARKMGIATVAVYSDADRDAVHVEMADEAVHIGPSPAAQSY 60 Query: 86 QL-IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + P +G L E + L + F+G A A DK + Sbjct: 61 LVPEKIIAACKETGAQAVHPG-YGFLSERAAFCEALEKEGIVFIGPKPKAIKAMGDKIES 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K+ A ++ P N ++ ++G P+ +K + G G+ ++ + Sbjct: 120 KKFANAAKVSTVPGWLGVIEN--ADHAEKIAGEIGYPVMIKASAGGGGKGMRIAWNQSEV 177 Query: 205 AIAVDLAF------EFDHKVIVEQG-IKGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 D A D +V +E+ + R IE VL + + A GE + Sbjct: 178 RDGFDRARSEAKSSFGDDRVFIEKFVVDPRHIEIQVLADAHGNALYLGER--ECSIQRRN 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K +E + + + +V + + V+ + + E+N Sbjct: 236 QKVAEE-----APSPFLDAKTRKAMGEQSVALARAVDYQSAGTVEFIVDKDKNFYFLEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 T + P +G+ + + R+ + Sbjct: 291 TRLQVEH----PVTELVTGIDLVEQMIRVAAGEKLSLKQSDI 328 >ref|NP_389706.1| (NC_000964) similar to biotin carboxylase [Bacillus subtilis] pir||E69893 biotin carboxylase homolog yngH - Bacillus subtilis emb|CAA74216.1| (Y13917) yngH [Bacillus subtilis] emb|CAB13707.1| (Z99113) similar to biotin carboxylase [Bacillus subtilis] Length = 444 Score = 228 bits (582), Expect = 6e-59 Identities = 56/343 (16%), Positives = 118/343 (34%), Gaps = 22/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV-PGKHE 84 + +R ++ + I + + + Y D H A + + + Sbjct: 1 MFTKVLIANRGEIAMRIIRTCSRLGIKTVAVYSEADKDAPHTKAATEAYLIGESRVSESY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D I P +G L E+ + N+ F+G A K Sbjct: 61 LNIERIIKTAKKAKADAIHPG-YGLLSENSRFAERCKQENIVFIGPSPDIIAKMGSKIEA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 ++ + AG+ + P ++ + + + S++G P+ +K + G +G+ +V +EE Sbjct: 120 RKAMEAAGVPVVPGVSESLGDI--EAACRTASQIGYPVMLKASAGGGGIGMQRVENEEAL 177 Query: 205 AIAVD------LAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A + F D + +E+ I+ R IE +L + + E Sbjct: 178 KKAYEGNKKRAADFFGDGSMYIEKVIEHARHIEVQLLADQHGHTVHLFERD--CSVQRRH 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E + E+ KI AV+A + +G ++ + + E+N Sbjct: 236 QKVIEE-----APSPFVDDELRMKIGQTAVKAAKAIGYTNAGTIEFIVDQKQNFYFLEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P + +GL + R+ + + Sbjct: 291 TRLQVEH----PVTEEITGLDLVEQQLRIAAGHTLTFSQKDIQ 329 >pir||A34337 propionyl-CoA carboxylase (EC 6.4.1.3) alpha chain precursor - rat (fragment) Length = 704 Score = 228 bits (581), Expect = 6e-59 Identities = 56/342 (16%), Positives = 114/342 (32%), Gaps = 22/342 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKHEHQL 87 + +R ++ I + + + + H+ + A + P K + Sbjct: 41 KILIANRGEIACRVIKTCRKMGIRTVAIHSDVDASSVHVKMADEAVCVGPAPTSKSYLNM 100 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + P +G L E+ L ++ F+G D A A DK +K L Sbjct: 101 DAIMEAIKKTGAQAVHPG-YGFLSENKEFAKCLAAEDVTFIGPDTHAIQAMGDKIESKLL 159 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + A +N P + + ++G P+ +K + G G+ +E+ Sbjct: 160 AKRAKVNTIPGFDGVLKDADE--AVRIAREIGYPVMIKASAGGGGKGMRIPWDDEETRDG 217 Query: 208 V----DLAF--EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A D ++++E+ I R IE VLG+ + A E + K Sbjct: 218 FRFSSQEAASSFGDDRLLIEKFIDNPRHIEIQVLGDKHGNALWLNER--ECSIQRRNQKV 275 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E + PE + AV + + + V+ + + E+NT Sbjct: 276 VEE-----APSIFLDPETRRAMGEQAVALAKAVKYSSAGTVEFLVDSQKNFYFLEMNTRL 330 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALKT 362 + P +GL + + + RH ++ + Sbjct: 331 QVEH----PVTECITGLDLVQEMILVAKGYPLRHKQEDIPIS 368 >ref|NP_009767.1| (NC_001134) Urea amidolyase (contains urea carboxylase and allophanate hydrolase); Dur1,2p [Saccharomyces cerevisiae] sp|P32528|DUR1_YEAST UREA AMIDOLYASE [INCLUDES: UREA CARBOXYLASE ; ALLOPHANATE HYDROLASE ] pir||S46082 urea carboxylase (EC 6.3.4.6) - yeast (Saccharomyces cerevisiae) emb|CAA85172.1| (Z36077) ORF YBR208c [Saccharomyces cerevisiae] Length = 1835 Score = 228 bits (581), Expect = 7e-59 Identities = 57/340 (16%), Positives = 107/340 (30%), Gaps = 24/340 (7%) Query: 30 AIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKH-EHQLI 88 + +R ++ + I + + + Y H+ + L + Sbjct: 636 VLIANRGEIAVRIIKTLKKLGIRSVAVYSDPDKYSQHVTDADVSVPLHGTTAAQTYLDMN 695 Query: 89 DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLL 148 + I P +G L E+ A + FVG K +++ Sbjct: 696 KIIDAAKQTNAQAIIPG-YGFLSENADFSDACTSAGITFVGPSGDIIRGLGLKHSARQIA 754 Query: 149 RDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV 208 + AG+ + P L +V ++L P+ VK G +G+ KV SEE Sbjct: 755 QKAGVPLVPGSLLIT---SVEEAKKVAAELEYPVMVKSTAGGGGIGLQKVDSEEDIEHIF 811 Query: 209 D------LAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYI 261 + F D V +E+ I R +E ++G+ +A GE + K I Sbjct: 812 ETVKHQGETFFGDAGVFLERFIENARHVEVQLMGDGFGKAIALGERD--CSLQRRNQKVI 869 Query: 262 DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEINTLP 320 +E + + +R A L V+ ++E E+NT Sbjct: 870 EE-----TPAPNLPEKTRLALRKAAESLGSLLNYKCAGTVEFIYDEKKDEFYFLEVNTRL 924 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + P +GL + + R+ + Sbjct: 925 QVEH----PITEMVTGLDLVEWMIRIAANDAPDFDSTKVE 960 >ref|NP_372050.1| (NC_002758) acetyl-CoA carboxylase [Staphylococcus aureus subsp. aureus Mu50] ref|NP_374640.1| (NC_002745) acetyl-CoA carboxylase (biotin carboxylase subunit) accC [Staphylococcus aureus subsp. aureus N315] dbj|BAB42619.1| (AP003134) acetyl-CoA carboxylase accC [Staphylococcus aureus subsp. aureus N315] dbj|BAB57688.1| (AP003362) acetyl-CoA carboxylase [Staphylococcus aureus subsp. aureus Mu50] Length = 451 Score = 227 bits (580), Expect = 8e-59 Identities = 49/342 (14%), Positives = 111/342 (32%), Gaps = 23/342 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH- 85 + + +R ++ + I + + Y D H + A + K + Sbjct: 1 MKKVLIANRGEIAVRIIRACRDLGIQTVAIYSEGDKDALHTQIADEAYCVGPTLSKDSYL 60 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + + + D + P +G L E+ + L F+G + KDV K Sbjct: 61 NIPNILSIATSTGCDGVHPG-YGFLAENADFAELCEACQLKFIGPSYQSIQKMGIKDVAK 119 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 + A + + P + ++ K+G P+ +K G G+ E++ Sbjct: 120 AEMIKANVPVVPGSDGLMKD--VSEAKKIAKKIGYPVIIKATAGGGGKGIRVARDEKELE 177 Query: 206 ------IAVDLAFEFDHKVIVEQGIKG-REIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 + + +E+ I+ R IE ++G+ GE Sbjct: 178 TGFRMTEQEAQTAFGNGGLYMEKFIENFRHIEIQIVGDSYGNVIHLGERD--CTIQRRMQ 235 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEIN 317 K ++E + E ++ AV+A + + ++ +N+ E+N Sbjct: 236 KLVEE-----APSPILDDETRREMGNAAVRAAKAVNYENAGTIEFIYDLNDNKFYFMEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 T + P +G+ L ++ + + ++ Sbjct: 291 TRIQVEH----PVTEMVTGIDLVKLQLQVAMGDVLPYKQEDI 328 >gb|AAB18338.1| (U75444) D-Ala-D-Ala ligase2 [Leuconostoc mesenteroides] Length = 377 Score = 227 bits (580), Expect = 8e-59 Identities = 125/369 (33%), Positives = 209/369 (55%), Gaps = 13/369 (3%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSR-FDVVLLGIDKQGQWHVSDASNYLL 59 M K RV ++FGG S+EH+VS +SA+N +AI+ + +++++ I + G + +++S +L Sbjct: 1 MTKKRVALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKIL 60 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 +D I T L + D+ FP+VHG LGEDG+LQG+ Sbjct: 61 ALEDEQPIVDAFMKTV------DASDPLARIHALKSAGDFDIFFPVVHGNLGEDGTLQGL 114 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ + P+VG+ + A DK +TK LL G+ +I + + +N S+ ++ ++LG Sbjct: 115 FKLLDKPYVGAPLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELG 174 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGNDN 238 +FVK ANQGSSVG+S+VT+ E+Y A+ +F++D+KV++E+ + G RE+E V+GND Sbjct: 175 NIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVNGARELEVGVIGNDQ 234 Query: 239 PQASTCGEIVLT-----SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 P S G + +Y Y+ K++D +PA ++PE+ +++ +A+ AY+ L Sbjct: 235 PLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFEIPAQLSPEVTKEVKQMALDAYKVL 294 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G AR+D L N + E NTLPGFTN+S++ +LW S + L+ LI+ E Sbjct: 295 NLRGEARMDFLLDENNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLIDYGFED 354 Query: 354 HAADNALKT 362 A + L Sbjct: 355 FAQNKKLSY 363 >sp|Q48745|DDL_LEUME D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAA87679.1| (U08909) putative D-alanine:D-alanine ligase [Leuconostoc mesenteroides] Length = 377 Score = 227 bits (580), Expect = 9e-59 Identities = 125/369 (33%), Positives = 209/369 (55%), Gaps = 13/369 (3%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDK-SRFDVVLLGIDKQGQWHVSDASNYLL 59 M K RV ++FGG S+EH+VS +SA+N +AI+ ++++++ I + G + +++S +L Sbjct: 1 MTKKRVALIFGGNSSEHDVSKRSAQNFYNAIEATDKYEIIVFAIAQNGFFLDTESSKKIL 60 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 +D I T L + D+ FP+VHG LGEDG+LQG+ Sbjct: 61 ALEDEQPIVDAFMKTV------DTSDPLARIHALKSAGDFDIFFPVVHGNLGEDGTLQGL 114 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ + P+VG+ + A DK +TK LL G+ +I + + +N S+ ++ ++LG Sbjct: 115 FKLLDKPYVGAPLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELG 174 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGNDN 238 +FVK ANQGSSVG+S+VT+ E+Y A+ +F++D+KV++E+ + G RE+E V+GND Sbjct: 175 NIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVNGARELEVGVIGNDQ 234 Query: 239 PQASTCGEIVLT-----SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 P S G + +Y Y+ K++D +PA ++PE+ +++ +A+ AY+ L Sbjct: 235 PLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFEIPAQLSPEVTKEVKQMALDAYKVL 294 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G AR+D L N + E NTLPGFTN+S++ +LW S + L+ LI+ E Sbjct: 295 NLRGEARMDFLLDENNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLIDYGFED 354 Query: 354 HAADNALKT 362 A + L Sbjct: 355 FAQNKKLSY 363 >ref|NP_357130.1| (NC_003063) AGR_L_2704p [Agrobacterium tumefaciens] [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAK89915.1| (AE008334) AGR_L_2704p [Agrobacterium tumefaciens str. C58 (Cereon)] Length = 709 Score = 227 bits (579), Expect = 1e-58 Identities = 60/335 (17%), Positives = 111/335 (32%), Gaps = 23/335 (6%) Query: 19 VSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ 78 S A + +R ++ I + + Y D H+AL A ++ Sbjct: 40 YSGCEATMFSKILIANRGEIACRIIRTAASMGIRTVAVYSDADRDAMHVALADEAIAIGP 99 Query: 79 VPGK-HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAA 137 P + + I P +G L E+ A L F+G A A Sbjct: 100 APARASYLDGEKIIAAAKASGAEAIHPG-YGFLSENAGFAEACASAGLVFIGPPPEAIRA 158 Query: 138 CMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSK 197 K K L+ AG+ I P + A K+G P+ +K + G G+ Sbjct: 159 MGGKSEAKALMATAGVPIVPGYHGD--EQAEKRLASEADKIGYPVLLKASAGGGGKGMRV 216 Query: 198 VTSEEQYAIAV------DLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLT 250 V + +A + LA + ++++E+ ++ R +E V + + + E Sbjct: 217 VRQKHDFAAELAGAKREALAAFGNDRMLIEKYLERPRHVEVQVFADGHGNCVSLFERD-- 274 Query: 251 SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENE 310 K I+E + ++ ++ A A + + G ++ L P Sbjct: 275 CSIQRRHQKVIEE-----APAPGLPDDLRQRMYDAATAAARAIDYRGAGTIEFLLDPSG- 328 Query: 311 VVINEINTLPGFTNISMYPKLWQASGLGYTDLITR 345 E+NT + P +GL + R Sbjct: 329 FYFMEMNTRLQVEH----PVTEYITGLDLVEWQLR 359 >ref|NP_104954.1| (NC_002678) pyruvate carboxylase [Mesorhizobium loti] dbj|BAB50740.1| (AP003003) pyruvate carboxylase [Mesorhizobium loti] Length = 1152 Score = 227 bits (579), Expect = 1e-58 Identities = 46/342 (13%), Positives = 106/342 (30%), Gaps = 30/342 (8%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG--- 81 I + +R ++ + + + + + H + + + P Sbjct: 1 MAITKILVANRSEIAIRVFRAANELGLKTVAIWAEEDKYSLHRFKADESYQVGRGPHLTK 60 Query: 82 -----KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASA 136 + + + L D I P +G L E A + F+G Sbjct: 61 DMGPIESYLSIEEVIRVARLSGADAIHPG-YGLLSESPEFAEACAQAGITFIGPKPDTMR 119 Query: 137 ACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVS 196 +K + L + G+ + P + ++ ++G P+ +K + G G+ Sbjct: 120 RLGNKVAARNLAIEVGVPVIPATDPLP--DDMEAVKKLAKEIGYPVMLKASWGGGGRGMR 177 Query: 197 KVTSEEQYAIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVL 249 + SE A V A +V +E+ I+ R +E VLG+ + A E Sbjct: 178 AIRSEADLAREVTEGKREAKAAFGKDEVYLEKLIERARHVEVQVLGDTHGNAVHLFERD- 236 Query: 250 TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE- 308 + K ++ + +++ A++ + G V+ + Sbjct: 237 -CSIQRRNQKVVE-----RAPAPYLEMSQREELCGYALKIARETSYIGAGTVEFLQDADT 290 Query: 309 NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + E+N + Q +G+ +++ Sbjct: 291 GKFYFIEVNPRIQVEHTV----TEQVTGIDIVKAQIHILDGF 328 >ref|NP_355659.1| (NC_003062) AGR_C_4940p [Agrobacterium tumefaciens] [Agrobacterium tumefaciens str. C58 (Cereon)] ref|NP_533391.1| (NC_003304) pyruvate carboxylase [Agrobacterium tumefaciens str. C58 (U. Washington)] gb|AAK88444.1| (AE008185) AGR_C_4940p [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAL43707.1| (AE009219) pyruvate carboxylase [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 1174 Score = 225 bits (574), Expect = 4e-58 Identities = 45/373 (12%), Positives = 112/373 (29%), Gaps = 31/373 (8%) Query: 6 VGIVFGG-KSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 V +++ + ++ I + +R ++ + + + + + Sbjct: 2 VLLLYSAVQQNSVLACGETVLKISKILVANRSEIAIRVFRAANELGIKTVAIWAEEDKLS 61 Query: 65 AHIALRPSATSLAQVPG--------KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 H + + + P + + + L D I P +G L E Sbjct: 62 LHRFKADESYQVGRGPHLAKDMGPIESYLSIEEVIRVAKLSGADAIHPG-YGLLSESPEF 120 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 A + F+G +K + L + + P + + Sbjct: 121 VEACNKAGITFIGPTPDTMRQLGNKVAARNLAISVDVPVVPATNPLPDDIAE--VERMAE 178 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDL------AFEFDHKVIVEQGIK-GREI 229 ++G P+ +K + G G+ + +E A V A +V +E+ ++ R + Sbjct: 179 EIGYPVMLKASWGGGGRGMRAIRKKEDLAREVTEAKREAKAAFGKDEVYLEKLVERARHV 238 Query: 230 ECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 E +LG+ + E + K ++ ++ ++ A +++ Sbjct: 239 ESQILGDTHGNVVHLFERD--CSIQRRNQKVVE-----RAPAPYLSEAQRQELAAYSLKI 291 Query: 290 YQTLGCAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 G V+ + + + E+N + +G+ ++E Sbjct: 292 AAATNYIGAGTVEYLMDADTGKFYFIEVNPRIQVEHTV----TEVVTGIDIVKAQIHILE 347 Query: 349 LALERHAADNALK 361 A A K Sbjct: 348 GAAIGTAESGVPK 360 >gb|AAF09095.1|AF068759_1 (AF068759) pyruvate carboxylase [Lactococcus lactis subsp. lactis] Length = 1137 Score = 225 bits (574), Expect = 4e-58 Identities = 56/343 (16%), Positives = 109/343 (31%), Gaps = 26/343 (7%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ--VPGKHE 84 + + +R ++ + + +S + Y + H + + Q P Sbjct: 1 MKKLLVANRGEIAVRVFRACNELGLSTVAVYAREDEYSVHRFKADESYLIGQGKKPIDAY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D D I P +G L E+ +R A L FVG ++ DK Sbjct: 61 LDIDDIIRVALESGADAIHPG-YGLLSENLEFATKVRAAGLVFVGPELHHLDIFGDKIKA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K +A + P T E G P+ +K A G G+ ++ + Sbjct: 120 KAAADEAQVPGIPG---TNGAVDIDGALEFAQTYGYPVMIKAALGGGGRGMRVARNDAEM 176 Query: 205 AIAVDLA------FEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A ++ VE+ I + IE +LG+ + E + Sbjct: 177 HDGYARAKSEAIGAFGSGEIYVEKYIENPKHIEVQILGDSHGNIVHLHERD--CSVQRRN 234 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+ + ++PE ++I AV+ + +G V+ + +++ E+N Sbjct: 235 QKVIE-----IAPAVGLSPEFRNEICEAAVKLCKNVGYVNAGTVEFLV-KDDKFYFIEVN 288 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + +G+ LI + H Sbjct: 289 PRVQVEHT----ITELITGVDIVQAQI-LIAQGKDLHTEIGIP 326 >ref|NP_300241.1| (NC_002491) biotin carboxylase [Chlamydophila pneumoniae J138] ref|NP_445129.1| (NC_002179) acetyl-coenzyme A carboxylase, biotin carboxylase [Chlamydophila pneumoniae AR39] pir||G81560 acetyl-coenzyme A carboxylase, biotin carboxylase CP0586 [imported] - Chlamydophila pneumoniae (strain AR39) gb|AAF38404.1| (AE002217) acetyl-coenzyme A carboxylase, biotin carboxylase [Chlamydophila pneumoniae AR39] dbj|BAA98392.1| (AP002545) biotin carboxylase [Chlamydophila pneumoniae J138] Length = 454 Score = 225 bits (574), Expect = 5e-58 Identities = 58/342 (16%), Positives = 115/342 (32%), Gaps = 22/342 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQ 86 + + +R ++ + I +S + Y L + H+ L A + + + Sbjct: 1 MKKVLIANRGEIAVRIIRACHDLGLSTVAVYSLADQEALHVLLADEAICIGEPQAAKSYL 60 Query: 87 LI-DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 I + + D + P +G L E+ + + L F+G + A DK K Sbjct: 61 KISNILAACEITGADAVHPG-YGFLSENANFASICESCGLTFIGPSSESIAMMGDKIAAK 119 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 L + + P + ++ K+G P+ +K G G+ V ++++ Sbjct: 120 SLAKKIKCPVIPGSEGIIEDESEGL--KIAEKIGFPIVIKAVAGGGGRGIRIVKEKDEFY 177 Query: 206 IAVDLAF------EFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A A + V +E+ I R +E V+G+ + GE Sbjct: 178 RAFSAARAEAEAGFNNPNVYIEKFIENPRHLEIQVIGDTHGNYVHLGERD--CTIQRRRQ 235 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K I+E + EI K+ IAV ++ G + V+ L + + E+NT Sbjct: 236 KLIEE-----TPSPILNAEIRVKVGKIAVDLARSAGYFSVGTVEFLLDKDKKFYFMEMNT 290 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + + +G+ + N Sbjct: 291 RIQVEHT----ITEEVTGIDLVKEQIHVAMGNKLPWKQKNIE 328 >gb|AAC41643.1| (M64926) urea amidolyase [Saccharomyces cerevisiae] Length = 1835 Score = 225 bits (574), Expect = 5e-58 Identities = 56/340 (16%), Positives = 107/340 (31%), Gaps = 24/340 (7%) Query: 30 AIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKH-EHQLI 88 + +R ++ + I + + + Y H+ + L + Sbjct: 636 VLIANRGEIAVRIIKTLKKLGIRSVAVYSDPDKYSQHVTDADVSVPLHGTTAAQTYLDMN 695 Query: 89 DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLL 148 + I P +G L E+ A + FVG K +++ Sbjct: 696 KIIDAAKQTNAQAIIPG-YGFLSENADFSDACTSAGITFVGPSGDIIRGLGLKHSARQIA 754 Query: 149 RDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV 208 + AG+ + P L +V ++L P+ VK G +G+ KV SEE Sbjct: 755 QKAGVPLVPGSLLIT---SVEEAKKVAAELEYPVMVKSTAGGGGIGLQKVDSEEDIEHIF 811 Query: 209 D------LAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYI 261 + F D V +++ I R +E ++G+ +A GE + K I Sbjct: 812 ETVKHQGETFFGDAGVFLKRFIENARHVEVQLMGDGFGKAIALGERD--CSLQRRNQKVI 869 Query: 262 DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEINTLP 320 +E + + +R A L V+ ++E E+NT Sbjct: 870 EE-----TPAPNLPEKTRLALRKAAESLGSLLNYKCAGTVEFIYDEKKDEFYFLEVNTRL 924 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + P +GL + + R+ + Sbjct: 925 QVEH----PITEMVTGLDLVEWMIRIAANDAPDFDSTKVE 960 >pir||T43735 pyruvate carboxylase (EC 6.4.1.1) [validated] - yellow fever mosquito gb|AAB64306.1| (L36530) pyruvate carboxylase [Aedes aegypti] Length = 1195 Score = 225 bits (574), Expect = 5e-58 Identities = 52/330 (15%), Positives = 101/330 (29%), Gaps = 23/330 (6%) Query: 30 AIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ--VPGKHEHQL 87 + +R ++ + + + + Y H + + + P + + Sbjct: 41 VLVANRGEIAIRVFRACNELGIRSVAVYSEQDKMHMHRQKADESYMVGKGLAPVEAYLSI 100 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + VD + P +G L E + A L F+G DK ++ Sbjct: 101 PEIIRVCKENDVDAVHPG-YGFLSERSDFAQAVIDAGLRFIGPSPKVVQQMGDKVAARKA 159 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 +AG+ I P + K GLP+ K A G G+ V E+ Sbjct: 160 AIEAGVPIVPGTDGPVT--TKEEALDFCKKHGLPVIFKAAYGGGGRGMRVVRKMEEVEDN 217 Query: 208 VDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A + + +E+ I+ R IE +LG+ E K Sbjct: 218 FQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERD--CSVQRRHQKV 275 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++ + + E+ DK+ AV+ + +G V+ E+N Sbjct: 276 VE-----IAPAPRLPREVRDKMTEYAVKLAKHVGYENAGTVEFLCDESGNFYFIEVNARL 330 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELA 350 + + +G+ R+ E Sbjct: 331 QVEHTV----TEEITGIDLVQSQIRVAEGM 356 >ref|NP_297342.1| (NC_002488) biotin carboxylase subunit of acetyl CoA carboxylase [Xylella fastidiosa 9a5c] pir||E82853 biotin carboxylase subunit of acetyl CoA carboxylase XF0049 [imported] - Xylella fastidiosa (strain 9a5c) gb|AAF82862.1|AE003859_3 (AE003859) biotin carboxylase subunit of acetyl CoA carboxylase [Xylella fastidiosa 9a5c] Length = 469 Score = 225 bits (574), Expect = 5e-58 Identities = 51/343 (14%), Positives = 110/343 (31%), Gaps = 22/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKHE 84 + + +R ++ L + + + + + H+A+ + + P + Sbjct: 15 MLDKVVIANRGEIALRILRACHTLGIRTVAVHSTVDRNLKHVAMADESVCIGSAPSAESY 74 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + I P +G L E+ S + + F+G DK Sbjct: 75 LNIPALIAAAEVTDAQAIHPG-YGFLSENASFAERVEQSGFIFIGPRAETIRLMGDKVQA 133 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 ++ AG+ P + + + ++G P+ +K A G G+ V +E Sbjct: 134 IHAMKAAGVPCVPGSDGPLGDDIVANVK-IAREIGYPVIIKAAGGGGGRGMRVVHTEVGL 192 Query: 205 AIAVDL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A++ A + +V +E+ + R +E VL + A GE Sbjct: 193 KAAIETTQSEAKAAFGNGQVYMEKFLENPRHVEIQVLADGQGNAIHLGERD--CSMQRRH 250 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E I + ++I + V A +G G + E+N Sbjct: 251 QKVVEE-----APAPGITEALRNEIGQVCVDACIRIGYRGAGTFEFLF-ENGRFYFIEMN 304 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P + +G+ R+ + + Sbjct: 305 TRIQVEH----PVTERITGIDLVCEQLRIAAGQPLSIKQSDVV 343 >gb|AAB92588.1| (AF038548) pyruvate carboxylase [Corynebacterium glutamicum] emb|CAA70739.1| (Y09548) pyruvate carboxylase [Corynebacterium glutamicum] Length = 1140 Score = 225 bits (574), Expect = 5e-58 Identities = 59/348 (16%), Positives = 111/348 (30%), Gaps = 26/348 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA--QVPGKH 83 + +R ++ + + + + Y H + A + P K Sbjct: 11 AFKKILVANRGEIAVRAFRAALETGAATVAIYPREDRGSFHRSFASEAVRIGTEGSPVKA 70 Query: 84 EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + + D I+P +G L E+ L + F+G DK Sbjct: 71 YLDIDEIIGAAKKVKADAIYPG-YGFLSENAQLARECAENGITFIGPTPEVLDLTGDKSR 129 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 + AGL + T +++ + P+FVK G G+ V S ++ Sbjct: 130 AVTAAKKAGLPVLAEST---PSKNIDEIVKSAEGQTYPIFVKAVAGGGGRGMRFVASPDE 186 Query: 204 YAIAV------DLAFEFDHKVIVEQG-IKGREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 A D V VE+ I + IE +LG+ + E Sbjct: 187 LRKLATEASREAEAAFGDGAVYVERAVINPQHIEVQILGDHTGEVVHLYERD--CSLQRR 244 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEI 316 K ++ + + PE+ D+I A AV+ +++G G V+ + + V E+ Sbjct: 245 HQKVVE-----IAPAQHLDPELRDRICADAVKFCRSIGYQGAGTVEFLVDEKGNHVFIEM 299 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLI--ELALERHAADNALKT 362 N + + + + RL E + +KT Sbjct: 300 NPRIQVEHTV----TEEVTEVDLVKAQMRLAAGATLKELGLTQDKIKT 343 >ref|NP_254123.1| (NC_002516) probable biotin carboxylase subunit of a transcarboxylase [Pseudomonas aeruginosa] pir||G82966 probable biotin carboxylase subunit of a transcarboxylase PA5436 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG08821.1|AE004956_5 (AE004956) probable biotin carboxylase subunit of a transcarboxylase [Pseudomonas aeruginosa] Length = 471 Score = 225 bits (574), Expect = 5e-58 Identities = 57/342 (16%), Positives = 110/342 (31%), Gaps = 22/342 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 I + +R ++ + + + + + Y H+ A S+ P Sbjct: 1 MIKKILIANRGEIAVRIVRACAEMGIRSVAVYSEADRHALHVKRADEAHSIGADPLAGYL 60 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 N D + P +G L E+ L + + F+G DK + Sbjct: 61 NPRALVNLAVESGCDALHPG-YGFLSENAELAEICAERGIKFIGPSAQVIRRMGDKTEAR 119 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 R + AG+ P A+ ++G P+ +K + G G+ + S E+ Sbjct: 120 RSMIAAGVPCTPGTEGNVADLAE--ALREAERIGYPVMLKATSGGGGRGIRRCNSREELE 177 Query: 206 IAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A +V +E+ I + IE +L + E + Sbjct: 178 QAFPRVISEATKAFGSAEVFLEKCIVNPKHIEAQILADSFGNTVHLFERD--CSIQRRNQ 235 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K I+ + + PE I +AV+A + +G V+ L + EV E+NT Sbjct: 236 KLIE-----IAPSPQLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLL-ADGEVYFMEMNT 289 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + + +G+ R+ D+ + Sbjct: 290 RVQVEHT----ITEEITGIDVVREQIRIASGLELSVKQDDIV 327 >ref|NP_219627.1| (NC_000117) Biotin Carboxylase [Chlamydia trachomatis] pir||H71553 probable biotin carboxylase - Chlamydia trachomatis (serotype D, strain UW3/Cx) gb|AAC67715.1| (AE001286) Biotin Carboxylase [Chlamydia trachomatis] Length = 457 Score = 225 bits (573), Expect = 6e-58 Identities = 56/341 (16%), Positives = 117/341 (33%), Gaps = 22/341 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQ 86 + + +R ++ + I ++ + Y + + H+ L A + + + Sbjct: 1 MKKVLIANRGEIAIRIIRACHDLGLATVAVYSMADQEALHVLLADEAVCIGEAQAAKSYL 60 Query: 87 -LIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + + + VD + P +G L E+ + + L F+G + A DK K Sbjct: 61 KIANILAACEITGVDAVHPG-YGFLSENANFASICESCGLTFIGPSAESIATMGDKVAAK 119 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 +L + + P + + K+G P+ +K G G+ V ++++ Sbjct: 120 QLAKKIKCPVIPGSEGVVKDEVEG--IRIAEKIGFPIVIKAVAGGGGRGIRIVREKDEFY 177 Query: 206 IAVDLAF------EFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A A + V +E+ I R +E V+G+ + GE Sbjct: 178 RAFTAARAEAEAGFNNPDVYIEKFIENPRHLEVQVIGDKHGNYVYLGERD--CTVQRRRQ 235 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K I+E + PE+ K+ +AV ++ G + V+ L E E+NT Sbjct: 236 KLIEE-----TPSPILTPEMRAKVGKVAVDLARSAGYFSVGTVEFLLDKEKRFYFMEMNT 290 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 + + +G+ + + N Sbjct: 291 RIQVEHT----ITEEVTGIDLLKAQISVAKGEKLPWKQKNI 327 >ref|NP_505977.1| (NM_073576) pyruvate carboxylase [Caenorhabditis elegans] pir||T20346 pyruvate carboxylase (EC 6.4.1.1) D2023.2 [similarity] - Caenorhabditis elegans emb|CAB02872.1| (Z81052) predicted using Genefinder~Similarity to Human pyruvate carboxylase (TR:G458236), contains similarity to Pfam domain: PF00289 (Carbamoyl-phosphate synthase (CPSase)), Score=572.0, E-value=1.3e-168, N=1; PF00364 (Biotin-requiring enzymes), Scor> gb|AAF60326.1|AF237467_1 (AF237467) pyruvate carboxylase [Caenorhabditis elegans] Length = 1175 Score = 225 bits (573), Expect = 6e-58 Identities = 54/347 (15%), Positives = 111/347 (31%), Gaps = 24/347 (6%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ--VPGK 82 + + +R ++ + + + + + Y + H A + + P Sbjct: 30 REFNKVMVANRGEIAIRVFRALTELNKTSVAIYAEQDKNSMHRLKADEAYLVGKGLPPVA 89 Query: 83 HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKD 142 + +D I P +G L E + A + F+G A DK Sbjct: 90 AYLTIDQIIETALKHNIDAIHPG-YGFLSERSDFAAACQNAGIVFIGPSPDVMARMGDKV 148 Query: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEE 202 ++ +AG+ + P E + G P+ +K A G G+ +V E Sbjct: 149 AARQAAIEAGVQVVPGTPGPIT--TADEAVEFAKQYGTPIILKAAYGGGGRGIRRVDKLE 206 Query: 203 QYAIAV------DLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYA 255 + A A D + VE+ ++ R IE +LG+ + E Sbjct: 207 EVEEAFRRSYSEAQAAFGDGSLFVEKFVERPRHIEVQLLGDHHGNIVHLYERD--CSVQR 264 Query: 256 YDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINE 315 K ++ + A+ + +KI A A++ + +G V+ + + E Sbjct: 265 RHQKVVE-----IAPAPALPEGVREKILADALRLARHVGYQNAGTVEFLVDQKGNYYFIE 319 Query: 316 INTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALKT 362 +N + + +G+ R I + +T Sbjct: 320 VNARLQVEHTV----TEEITGVDLVQAQIR-IAEGKSLDDLKLSQET 361 >ref|NP_501777.1| (NM_069376) carbomoyl-phosphate carboxylase [Caenorhabditis elegans] pir||T21641 hypothetical protein F32B6.2 - Caenorhabditis elegans emb|CAB03038.1| (Z81074) Similarity to Soybean 3-methylcrotonyl-CoA carboxylase (TR:Q42777), contains similarity to Pfam domain: PF00289 (Carbamoyl-phosphate synthase (CPSase)), Score=534.3, E-value=2.8e-157, N=2; PF00364 (Biotin-requiring enzymes), Score=54.1, E-valu> Length = 688 Score = 225 bits (573), Expect = 7e-58 Identities = 50/323 (15%), Positives = 115/323 (35%), Gaps = 22/323 (6%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA-QVPGKH 83 + I + +R ++ + + + + + + + + A + + + Sbjct: 17 RPIQRVLVANRGEIAIRVQNTARKMGIETVAVFSDADRNSLFVKKADKAYHIGPPLAAES 76 Query: 84 EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + N I P +G L E+ A L F+G A K+V Sbjct: 77 YLNMDKIINSALRSGAQAIHPG-YGFLSENAGFAEKCAQAGLVFIGPPAQAIRDMGAKNV 135 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 +K+++ DA + + ++ + + + +++G P+ +K G G+ +E + Sbjct: 136 SKQIMEDAKVPVVKG--FHGEDQSDANLKKKSAEIGYPVMLKAVYGGGGKGMRIAWNEAE 193 Query: 204 YAIAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 + + A + +++VE+ ++ R +E V G+ + E Sbjct: 194 FEEKLASARNEAKKSFGNDEMLVEKFVEKPRHVEVQVFGDHHGNYVHLWERD--CSVQRR 251 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEI 316 K I+E + + K+ AV+A +G G V+ + P E E+ Sbjct: 252 HQKIIEE-----APAPNMEHDTRVKLGESAVRAAAAVGYVGAGTVEFIMDPRGEFYFMEM 306 Query: 317 NTLPGFTNISMYPKLWQASGLGY 339 NT + P +G+ + Sbjct: 307 NTRLQVEH----PVSEAITGIDF 325 >gb|AAA88512.1| (M22631) alpha-propionyl-CoA carboxylase (EC 6.4.1.3) [Rattus norvegicus] Length = 721 Score = 224 bits (572), Expect = 8e-58 Identities = 56/342 (16%), Positives = 114/342 (32%), Gaps = 22/342 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKHEHQL 87 + +R ++ I + + + + H+ + A + P K + Sbjct: 58 KILIANRGEIACRVIKTCRKMGIRTVAIHSDVDASSVHVKMADEAVCVGPAPTSKSYLNM 117 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + P +G L E+ L ++ F+G D A A DK +K L Sbjct: 118 DAIMEAIKKTGAQAVHPG-YGFLSENKEFAKCLAAEDVTFIGPDTHAIQAMGDKIESKLL 176 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + A +N P + + ++G P+ +K + G G+ +E+ Sbjct: 177 AKRAKVNTIPGFDGVLKDADE--AVRIAREIGYPVMIKASAGGGGKGMRIPWDDEETRDG 234 Query: 208 V----DLAF--EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A D ++++E+ I R IE VLG+ + A E + K Sbjct: 235 FRFSSQEAASSFGDDRLLIEKFIDNPRHIEIQVLGDKHGNALWLNER--ECSIQRRNQKV 292 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E + PE + AV + + + V+ + + E+NT Sbjct: 293 VEE-----APSIFLDPETRRAMGEQAVAWPKAVKYSSAGTVEFLVDSQKNFYFLEMNTRL 347 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALKT 362 + P +GL + + + RH ++ + Sbjct: 348 QVEH----PVTECITGLDLVQEMILVAKGYPLRHKQEDIPIS 385 >ref|NP_350153.1| (NC_003030) Biotin carboxylase [Clostridium acetobutylicum] gb|AAK81493.1|AE007853_8 (AE007853) Biotin carboxylase [Clostridium acetobutylicum] Length = 447 Score = 224 bits (572), Expect = 8e-58 Identities = 52/342 (15%), Positives = 111/342 (32%), Gaps = 22/342 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 I + +R ++ + I + + + Y + H+ L A + Sbjct: 1 MISKILIANRGEIAVRIIRACREMGIETVAIYSEADKESMHVYLADEAVCVGPAKTQDSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + L I P G L E+G M N+ F+G D +K Sbjct: 61 LNIGNIISATVLTKAQAIHPGF-GFLSENGKFAKMCSECNIAFIGPDAETIENMGNKAKA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + ++ AG+ + P T + +++G P+ +K + G G+ V E+ Sbjct: 120 REIMIKAGVPVVPGCEGTI--DSEDQALKEATRIGYPVMLKASAGGGGRGIRIVREEKDL 177 Query: 205 AIAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + A D + +E+ I + R +E +LG+ GE + Sbjct: 178 ISSFRNAKSEAKAAFGDDSMYMEKFIEEPRHVEFQILGDSFGNVVYLGERD--CSIQRRN 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E + E+ ++ AV+A + + ++ L E+N Sbjct: 236 QKVLEE-----APSPVMTEELRREMGEAAVRAAKAVNYKNAGTIEFLLDKHGNYYFMEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 T + +G+ ++ + Sbjct: 291 TRIQVEHG----ITEMVTGVDLVKEQIKIASGNKLSFNQSDI 328 >emb|CAA70282.1| (Y09061) acetyl-CoA carboxylase, biotin carboxylase subunit [Arabidopsis thaliana] Length = 539 Score = 224 bits (572), Expect = 9e-58 Identities = 52/339 (15%), Positives = 111/339 (32%), Gaps = 21/339 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ + I + + + Y D H+ L A + + P + +I Sbjct: 76 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADEAVCIGEAPSNQSYLVI 135 Query: 89 DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLL 148 + + +G L E+ M R + F+G + DK + + Sbjct: 136 PNVLSAAISRGCTMLHPGYGFLSENALFVEMCRDHGINFIGPNPDTIRVMGDKATARETM 195 Query: 149 RDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV 208 ++AG+ P + V +++G P+ + G G+ ++ + Sbjct: 196 KNAGVPTVPGSDGLL--QSTEEAVRVANEIGFPVMITATAGGGGRGMRLAKEPGEFVKLL 253 Query: 209 DL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYI 261 A + +E+ + R IE VL + GE + K + Sbjct: 254 QQAKSEAAAAFGNDGCYLEKFVQNPRHIEFQVLADKFGNVVHFGERD--CSIQRRNQKLL 311 Query: 262 DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG 321 +E A+ E+ + AV A ++G G+ V+ L E+NT Sbjct: 312 EE------PSPALTAELRKAMGDAAVAAAASIGYIGVGTVEFLLDXRGSFYFMEMNTRIQ 365 Query: 322 FTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + P + + R+ R+ ++ + Sbjct: 366 VEH----PVTEMIYSVDLIEEQIRVAMGEKLRYKQEDIV 400 >ref|NP_224391.1| (NC_000922) Biotin Carboxylase [Chlamydophila pneumoniae CWL029] pir||E72110 biotin carboxylase - Chlamydophila pneumoniae (strain CWL029) gb|AAD18335.1| (AE001604) Biotin Carboxylase [Chlamydophila pneumoniae CWL029] Length = 454 Score = 224 bits (571), Expect = 9e-58 Identities = 57/342 (16%), Positives = 115/342 (32%), Gaps = 22/342 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQ 86 + + +R ++ + I +S + Y L + H+ L A + + + Sbjct: 1 MKKVLIANRGEIAVRIIRACHDLGLSTVAVYSLADQEALHVLLADEAICIGEPQAAKSYL 60 Query: 87 LI-DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 I + + D + P +G L E+ + + L F+G + A DK K Sbjct: 61 KISNILAACEITGADAVHPG-YGFLSENANFASICESCGLTFIGPSSESIAMMGDKIAAK 119 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 L + + P + ++ K+G P+ +K G G+ V ++++ Sbjct: 120 SLAKKIKCPVIPGSEGIIEDESEGL--KIAEKIGFPIVIKAVAGGGGRGIRIVKEKDEFY 177 Query: 206 IAVDLAF------EFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A A + V +E+ I R +E V+G+ + GE Sbjct: 178 RAFSAARAEAEAGFNNPNVYIEKFIENPRHLEIQVIGDTHGNYVHLGERD--CTIQRRRQ 235 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K I+E + EI K+ +AV ++ G + V+ L + + E+NT Sbjct: 236 KLIEE-----TPSPILNAEIRVKVGKVAVDLARSAGYFSVGTVEFLLDKDKKFYFMEMNT 290 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + + +G+ + N Sbjct: 291 RIQVEHT----ITEEVTGIDLVKEQIHVAMGNKLPWKQKNIE 328 >ref|NP_387384.1| (NC_003047) PROBABLE PYRUVATE CARBOXYLASE PROTEIN [Sinorhizobium meliloti] emb|CAC47857.1| (AL591793) PROBABLE PYRUVATE CARBOXYLASE PROTEIN [Sinorhizobium meliloti] Length = 1152 Score = 224 bits (571), Expect = 1e-57 Identities = 37/342 (10%), Positives = 99/342 (28%), Gaps = 30/342 (8%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-- 82 +I + +R ++ + + + + + H + + + P Sbjct: 1 MSISKILVANRSEIAIRVFRAANELGLKTVAIWAEEDKLALHRFKADESYQVGRGPHLPR 60 Query: 83 ------HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASA 136 + + L D I P +G L E + F+G Sbjct: 61 DLGPIMSYLSIDEVIRVAKLSGADAIHPG-YGLLSESPEFAEACAANGITFIGPKPETMR 119 Query: 137 ACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVS 196 +K + L G+ + P + + ++G P+ +K + G G+ Sbjct: 120 QLGNKVAARNLAISIGVPVVPATEPLPDDP--EEIKRLAEEIGYPVMLKASWGGGGRGMR 177 Query: 197 KVTSEEQYAIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVL 249 + + V A +V +E+ ++ R +E +LG+ + E Sbjct: 178 AIRDPKDLIREVTEAKREAKAAFGKDEVYLEKLVERARHVESQILGDTHGNVVHLFERD- 236 Query: 250 TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE- 308 + K ++ + ++ +++ + G V+ + + Sbjct: 237 -CSIQRRNQKVVE-----RAPAPYLNDAQRQELADYSLKIARATNYIGAGTVEYLMDSDT 290 Query: 309 NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + E+N + +G+ +++ Sbjct: 291 GKFYFIEVNPRIQVEHTV----TEVVTGIDIVKAQIHILDGF 328 >ref|NP_539184.1| (NC_003317) PYRUVATE CARBOXYLASE [Brucella melitensis] gb|AAL51448.1| (AE009469) PYRUVATE CARBOXYLASE [Brucella melitensis] Length = 1158 Score = 224 bits (571), Expect = 1e-57 Identities = 42/340 (12%), Positives = 102/340 (29%), Gaps = 30/340 (8%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG----- 81 I + +R ++ + + + + + H + + + P Sbjct: 8 ISKILVANRSEIAIRVFRAANELGLKTVTIWAEEDKLSLHRFKADESYQVGRGPHLDRDL 67 Query: 82 ---KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAAC 138 + + + L D I P +G L E + F+G Sbjct: 68 GPIESYLSIDEIIRVAKLSGADAIHPG-YGLLSESPEFAEACAENGIVFIGPKPETMRRL 126 Query: 139 MDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKV 198 +K + L + G+ + P ++ +++G PL +K + G G+ + Sbjct: 127 GNKVAARNLAIEIGVPVVPATDPLP--DDMDEVKKLAAQIGYPLMLKASWGGGGRGMRAI 184 Query: 199 TSEEQYAIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTS 251 +E A V A +V +E+ ++ R +E +LG+ A E Sbjct: 185 RAEADLAREVMEAKREAKAAFGKDEVYLEKLVERARHVEVQILGDTYGNAVHLFERD--C 242 Query: 252 DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE-NE 310 + K ++ + ++ ++ G V+ + + + Sbjct: 243 SIQRRNQKVVE-----RAPAPYLNDAQRRELADYGLKIAHATDYIGAGTVEFLMDADTGK 297 Query: 311 VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 E+N + + +G+ ++E Sbjct: 298 FYFIEVNPRIQVEHTV----TEEVTGIDIVKAQIHILEGF 333 >sp|P14882|PCCA_RAT PROPIONYL-COA CARBOXYLASE ALPHA CHAIN, MITOCHONDRIAL PRECURSOR (PCCASE ALPHA SUBUNIT) (PROPANOYL-COA:CARBON DIOXIDE LIGASE ALPHA SUBUNIT) Length = 704 Score = 224 bits (570), Expect = 1e-57 Identities = 56/342 (16%), Positives = 114/342 (32%), Gaps = 22/342 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKHEHQL 87 + +R ++ I + + + + H+ + A + P K + Sbjct: 41 KILIANRGEIACRVIKTCRKMGIRTVAIHSDVDASSVHVKMADEAVCVGPAPTSKSYLNM 100 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + P +G L E+ L ++ F+G D A A DK +K L Sbjct: 101 DAIMEAIKKTGAQAVHPG-YGFLSENKEFAKCLAAEDVTFIGPDTHAIQAMGDKIESKLL 159 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + A +N P + + ++G P+ +K + G G+ +E+ Sbjct: 160 AKRAKVNTIPGFDGVLKDADE--AVRIAREIGYPVMIKASAGGGGKGMRIPWDDEETRDG 217 Query: 208 V----DLAF--EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A D ++++E+ I R IE VLG+ + A E + K Sbjct: 218 FRFSSQEAASSFGDDRLLIEKFIDNPRHIEIQVLGDKHGNALWLNER--ECSIQRRNQKV 275 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E + PE + AV + + + V+ + + E+NT Sbjct: 276 VEE-----APSIFLDPETRRAMGEQAVAWPKAVKYSSAGTVEFLVDSQKNFYFLEMNTRL 330 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALKT 362 + P +GL + + + RH ++ + Sbjct: 331 QVEH----PVTECITGLDLVQEMILVAKGYPLRHKQEDIPIS 368 >dbj|BAB16297.1| (AB039884) acetyl-CoA carboxylase biotin carboxylase subunit [Myxococcus xanthus] Length = 573 Score = 224 bits (570), Expect = 1e-57 Identities = 62/330 (18%), Positives = 115/330 (34%), Gaps = 22/330 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQ 86 + +R ++ + I + S + + H+ A ++ P K + Sbjct: 4 FKKVLIANRGEIAVRVIRTCQRLGYSTVAVFSEADRGAPHVLAADEAVAIGPSPAKESYL 63 Query: 87 LID-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 +I + I P +G L E+ R A L F+G + A +K Sbjct: 64 VIGKILEAAKTSGAEAIHPG-YGFLSENADFARACRDAGLVFIGPEAEAITLMGNKRQAN 122 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 + AG+ P + + + A ++G PL VK A G G+ V Q Sbjct: 123 VRMIAAGVPCIPGYEASDLDD--EALAVEGERIGFPLMVKAAAGGGGRGMRLVHEASQLR 180 Query: 206 IAVDLA------FEFDHKVIVEQG-IKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A+ A ++I+E+ I R +E V + + GE Sbjct: 181 AALRAARSEATNAFGSGELILEKAVIDARHVEVQVFADTHGNVVHLGERD--CSVQRRHQ 238 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K ++E A++P + ++ +AV A + +G G ++ L P + E+NT Sbjct: 239 KIVEES-----PSPAVSPALRARMGEVAVAAARAIGYRGAGTIEFLLAPSGDFYFMEMNT 293 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIE 348 + P +GL + R+ Sbjct: 294 RLQVEH----PVTELITGLDLVEWQLRVAA 319 >gb|AAG37836.1|AF295372_1 (AF295372) pyruvate carboxylase [Danio rerio] Length = 1180 Score = 223 bits (569), Expect = 2e-57 Identities = 51/331 (15%), Positives = 98/331 (29%), Gaps = 23/331 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSL--AQVPGKHE 84 I + +R ++ + + + + Y H A + P Sbjct: 39 IKKVMVANRGEIAIRVFRACTELGIRTVAVYSEQDTGQMHRQKADEAYLIGRGLSPVAAY 98 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D VD I P +G L E A + F+G DK Sbjct: 99 LHIPDIIKVAKENNVDAIHPG-YGFLSERADFAQACAEAGVRFIGPSPEVVRKMGDKVEA 157 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + L AG+ + P + E P+ K A G G+ V + E+ Sbjct: 158 RALAIKAGVPVVPGTDAPISC--LQEAQEFAKTYDFPIIFKAAYGGGGRGMRVVRNYEEL 215 Query: 205 AIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A + + VE+ I+ R IE +LG+ E Sbjct: 216 EENYQRAYSEALAAFGNGALFVEKFIEKPRHIEVQILGDKYGNVIHLYERD--CSIQRRH 273 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ + A + + D++ +V + +G V+ + + E+N Sbjct: 274 QKVVE-----IAPAAHLDSHLRDRLTLDSVNLAKQVGYENAGTVEFLVDKHGKHYFIEVN 328 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 + + + + + R+ E Sbjct: 329 SRLQVEHTV----TEEITDVDLVHAQLRVCE 355 >ref|NP_470397.1| (NC_003212) highly similar to pyruvate carboxylase [Listeria innocua] emb|CAC96291.1| (AL596167) highly similar to pyruvate carboxylase [Listeria innocua] Length = 1146 Score = 223 bits (569), Expect = 2e-57 Identities = 56/339 (16%), Positives = 102/339 (29%), Gaps = 25/339 (7%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATS--LAQVPGKHE 84 I + +R ++ + + + + + Y H A + P Sbjct: 4 IKKVLVANRGEIAIRVMRACTELKIKTVAIYSQEDTGSFHRYKSDEAYLVGAGKKPIDAY 63 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + D I P +G L E+ + FVG DK Sbjct: 64 LDIENIIEIAKESGADAIHPG-YGFLSENIEFARRCEQEGIIFVGPKSKHLDMFGDKIKA 122 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K A + + P A E K G PL +K + G G+ V S+E Sbjct: 123 KEQALLADIPVIPGSDGPVAGI--KEVEEFGEKNGYPLMIKASLGGGGRGMRVVESKEHV 180 Query: 205 AIAVDL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + + A + +V VE+ + + IE +LG+ + E Sbjct: 181 KESFERASSEAKAAFGNDEVYVEKCVMNPKHIEVQILGDTHGNIVHLFERD--CSIQRRH 238 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ V AI E+ ++I AV+ + + V+ + +N E+N Sbjct: 239 QKVVE-----VAPCNAITSELRNRICDAAVKLMKNVDYINAGTVEFLVEGDN-FYFIEVN 292 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 + +G+ I H Sbjct: 293 PRVQVEHT----ITEMITGIDIVQSQL-FIADGYALHDQ 326 >gb|AAD34740.1| (AF132152) unknown [Drosophila melanogaster] gb|AAF58885.1| (AE003831) BcDNA:GH06348 gene product [alt 2] [Drosophila melanogaster] gb|AAF58886.1| (AE003831) BcDNA:GH06348 gene product [alt 3] [Drosophila melanogaster] gb|AAF58887.1| (AE003831) BcDNA:GH06348 gene product [alt 4] [Drosophila melanogaster] Length = 1181 Score = 223 bits (569), Expect = 2e-57 Identities = 54/330 (16%), Positives = 100/330 (29%), Gaps = 23/330 (6%) Query: 30 AIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ--VPGKHEHQL 87 + +R ++ + + + + Y H + + + P + + Sbjct: 42 VLVANRGEIAIRVFRACTELGIKSVAVYSEQDKMHMHRQKADESYIVGKGLPPVEAYLNI 101 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + VD + P +G L E + A L F+G DK + Sbjct: 102 PELIRVCKENDVDAVHPG-YGFLSERSDFAQAVIDAGLRFIGPSPEVVQKMGDKVAARVA 160 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 +AG+ I P E K GLP+ K A G G+ V E + Sbjct: 161 AIEAGVPIVPGTDGPVT--TKEEALEFCKKHGLPVIFKAAYGGGGRGMRVVRKMEDVEES 218 Query: 208 VDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A + + +E+ I+ R IE +LG+ E K Sbjct: 219 FQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERD--CSVQRRHQKV 276 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++ + + EI DK+ AV+ + +G V+ E+N Sbjct: 277 VE-----IAPAPRLPIEIRDKMTEAAVRLARHVGYENAGTVEFLCDESGNFYFIEVNARL 331 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELA 350 + + +G+ R+ E Sbjct: 332 QVEHTV----TEEITGIDLVQSQIRVAEGM 357 >gb|AAC44388.1| (U51439) pyruvate carboxylase [Rhizobium etli] Length = 1154 Score = 223 bits (569), Expect = 2e-57 Identities = 43/338 (12%), Positives = 105/338 (30%), Gaps = 30/338 (8%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG----- 81 I + +R ++ + + + + + H + + + P Sbjct: 3 ISKILVANRSEIAIRVFRAANELGIKTVAIWAEEDKLALHRFKADESYQVGRGPHLARDL 62 Query: 82 ---KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAAC 138 + + + L D I P +G L E A + F+G Sbjct: 63 GPIESYLSIDEVIRVAKLSGADAIHPG-YGLLSESPEFVDACNKAGIIFIGPKADTMRQL 121 Query: 139 MDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKV 198 +K + L G+ + P + A++ + +G P+ +K + G G+ + Sbjct: 122 GNKVAARNLAISVGVPVVPATEPLPDDMAE--VAKMAAAIGYPVMLKASWGGGGRGMRVI 179 Query: 199 TSEEQYAIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTS 251 SE A V A +V +E+ ++ R +E +LG+ + E Sbjct: 180 RSEADLAKEVTEAKREAMAAFGKDEVYLEKLVERARHVESQILGDTHGNVVHLFERD--C 237 Query: 252 DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE-NE 310 + K ++ ++ ++ A +++ G V+ + + + Sbjct: 238 SVQRRNQKVVE-----RAPAPYLSEAQRQELAAYSLKIAGATNYIGAGTVEYLMDADTGK 292 Query: 311 VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 E+N + +G+ +++ Sbjct: 293 FYFIEVNPRIQVEHTV----TEVVTGIDIVKAQIHILD 326 >gb|AAG22289.1| (AE003831) BcDNA:GH06348 gene product [alt 1] [Drosophila melanogaster] Length = 1196 Score = 223 bits (568), Expect = 3e-57 Identities = 54/330 (16%), Positives = 100/330 (29%), Gaps = 23/330 (6%) Query: 30 AIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ--VPGKHEHQL 87 + +R ++ + + + + Y H + + + P + + Sbjct: 42 VLVANRGEIAIRVFRACTELGIKSVAVYSEQDKMHMHRQKADESYIVGKGLPPVEAYLNI 101 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + VD + P +G L E + A L F+G DK + Sbjct: 102 PELIRVCKENDVDAVHPG-YGFLSERSDFAQAVIDAGLRFIGPSPEVVQKMGDKVAARVA 160 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 +AG+ I P E K GLP+ K A G G+ V E + Sbjct: 161 AIEAGVPIVPGTDGPVT--TKEEALEFCKKHGLPVIFKAAYGGGGRGMRVVRKMEDVEES 218 Query: 208 VDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A + + +E+ I+ R IE +LG+ E K Sbjct: 219 FQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERD--CSVQRRHQKV 276 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++ + + EI DK+ AV+ + +G V+ E+N Sbjct: 277 VE-----IAPAPRLPIEIRDKMTEAAVRLARHVGYENAGTVEFLCDESGNFYFIEVNARL 331 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELA 350 + + +G+ R+ E Sbjct: 332 QVEHTV----TEEITGIDLVQSQIRVAEGM 357 >ref|NP_464597.1| (NC_003210) highly similar to pyruvate carboxylase [Listeria monocytogenes EGD-e] emb|CAC99150.1| (AL591977) highly similar to pyruvate carboxylase [Listeria monocytogenes] Length = 1146 Score = 222 bits (567), Expect = 3e-57 Identities = 55/339 (16%), Positives = 102/339 (29%), Gaps = 25/339 (7%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATS--LAQVPGKHE 84 I + +R ++ + + + + + Y H A + P Sbjct: 4 IKKVLVANRGEIAIRVMRACTELKIKTVAIYSQEDTGSFHRYKSDEAYLVGAGKKPIDAY 63 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + D I P +G L E+ + FVG DK Sbjct: 64 LDIENIIEIAKESGADAIHPG-YGFLSENIEFARRCEQEGIIFVGPKSKHLDMFGDKIKA 122 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K A + + P A E K G PL +K + G G+ V S+E Sbjct: 123 KEQALLADIPVIPGSNGPVAGI--KEVEEFGEKNGYPLMIKASLGGGGRGMRVVESKEHV 180 Query: 205 AIAVDL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + + A + +V VE+ + + IE +LG+ + E Sbjct: 181 KESFERASSEAKAAFGNDEVYVEKCVMNPKHIEVQILGDTHGNIVHLFERD--CSIQRRH 238 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ V AI E+ ++I AV+ + + V+ + ++ E+N Sbjct: 239 QKVVE-----VAPCNAITSELRNRICDAAVKLMKNVDYINAGTVEFLVEGDD-FYFIEVN 292 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 + +G+ I H Sbjct: 293 PRVQVEHT----ITEMITGIDIVQSQL-FIADGYALHDQ 326 >gb|AAF32338.1|AF218939_6 (AF218939) acetyl-CoA carboxylase [Bacillus subtilis] Length = 430 Score = 222 bits (567), Expect = 3e-57 Identities = 61/328 (18%), Positives = 116/328 (34%), Gaps = 22/328 (6%) Query: 40 LLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV-PGKHEHQLIDAQNGQPLPT 98 + I + + A+ Y D H A + + + + Sbjct: 1 MRIIRTCSRLGIKTAAVYSEADRDALHTKAATEAYYIGESRVSESYLNIERIIEAAKKAN 60 Query: 99 VDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPF 158 D I P +G L E+ + N+ F+G A K ++ + +AG+ + P Sbjct: 61 ADAIHPG-YGLLSENSRFAQRCKEENIVFIGPSPAVIAKIGSKIKARKAMEEAGVPVVPG 119 Query: 159 ITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVD------LAF 212 ++ + + A S++G P+ +K + G +G+ V EE A + F Sbjct: 120 VSESLGDIQAACLA--ASEIGYPVMLKASAGGGGIGMQLVPDEEALIKAYEGNKKRAADF 177 Query: 213 EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVP 271 D + +E+ I+ R IE +L + + A E K I+E Sbjct: 178 FGDGSMYIEKVIEHARHIEIQILADHHGHAVHLFERD--CSVQRRHQKVIEE-----APS 230 Query: 272 AAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKL 331 + E+ KI AV+A + +G A ++ + E+NT + P Sbjct: 231 PFVDDELRMKIGETAVKAAKAIGYANAGTIEFLVDENKNFYFLEMNTRLQVEH----PVT 286 Query: 332 WQASGLGYTDLITRLIELALERHAADNA 359 + +GL + R+ E R + + Sbjct: 287 EEITGLDLVEQQLRVAEGQTLRFSQQDI 314 >ref|NP_296778.1| (NC_002620) acetyl-coenzyme A carboxylase, biotin carboxylase [Chlamydia muridarum] pir||D81708 acetyl-coenzyme A carboxylase, biotin carboxylase TC0400 [imported] - Chlamydia muridarum (strain Nigg) gb|AAF39257.1| (AE002306) acetyl-coenzyme A carboxylase, biotin carboxylase [Chlamydia muridarum] Length = 457 Score = 222 bits (566), Expect = 4e-57 Identities = 56/342 (16%), Positives = 115/342 (33%), Gaps = 22/342 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQ 86 + + +R ++ + I +S + Y + + H+ L A + + + Sbjct: 1 MKKVLIANRGEIAVRIIRACHDLGLSTVAIYSVADQEALHVLLADEAVCIGEAQAAKSYL 60 Query: 87 -LIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + + + D + P +G L E+ + + L F+G + A DK K Sbjct: 61 KIANILAACEITGADAVHPG-YGFLSENANFASICESCGLTFIGPSAESIATMGDKVAAK 119 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 +L + + P + + K+G P+ +K G G+ V ++++ Sbjct: 120 QLAKKIKCPVIPGSDGVVKDEVEG--IRIAEKIGFPIVIKAVAGGGGRGIRIVREKDEFY 177 Query: 206 IAVDLAF------EFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A A + V +E+ I R +E V+G+ GE Sbjct: 178 RAFTAARAEAESGFNNPDVYIEKFIENPRHLEVQVIGDKYGNYVYLGERD--CTVQRRRQ 235 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K I+E + PE+ K+ +AV ++ G + V+ L E E+NT Sbjct: 236 KLIEE-----TPSPILTPEMRAKVGKVAVDLARSAGYFSVGTVEFLLDAEKRFYFMEMNT 290 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + + +G+ + + N Sbjct: 291 RIQVEHT----ITEEITGIDLLKAQISVAKGEKLPWKQKNIE 328 >ref|NP_349267.1| (NC_003030) Pyruvate carboxylase, PYKA [Clostridium acetobutylicum] gb|AAK80607.1|AE007763_6 (AE007763) Pyruvate carboxylase, PYKA [Clostridium acetobutylicum] Length = 1144 Score = 222 bits (565), Expect = 6e-57 Identities = 53/334 (15%), Positives = 101/334 (29%), Gaps = 23/334 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV--PGKHE 84 + +R ++ + + + + Y + + Q P Sbjct: 5 FKRVLVANRGEIAIRIFRACHELGIRTVAIYSEEDKLALFRTKADESYLIGQNKGPVDAY 64 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + N VD I P +G L E+ A + F+G DK + Sbjct: 65 LNIDEIINLALKKGVDAIHPG-YGFLSENSEFSRRCTEAGIEFIGPTGDMMDKLGDKINS 123 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K + AG+ P + + E G P+ VK A G G+ V EE Sbjct: 124 KLAAKAAGVKTIPG--VEKPIETEQQAIEFARTCGYPVMVKAAAGGGGRGMRIVEKEEDL 181 Query: 205 AIAVDLA------FEFDHKVIVEQGIKG-REIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A + +E+ ++G + IE VLG+ E Sbjct: 182 IAACRSAKSEAKKAFGIEDIFIEKYLEGPKHIEVQVLGDKYGNIVHLYERD--CSVQRRH 239 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+ + +++ E +I A++ +++G ++ L E+N Sbjct: 240 QKVIE-----LTPAVSMSEEKRLEICEDALKIARSIGYRSAGTLEFLLDKHGNHYFIEMN 294 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 + +G+ + E Sbjct: 295 PRVQVEHT----ITEMVTGIDIVQSQILIAEGYK 324 >gb|AAA34843.1| (J03889) pyruvate carboxylase (EC 6.4.1.1) [Saccharomyces cerevisiae] Length = 1178 Score = 221 bits (564), Expect = 6e-57 Identities = 49/323 (15%), Positives = 99/323 (30%), Gaps = 25/323 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV----PGKHE 84 + +R ++ + + + + Y H A + +V P Sbjct: 21 KILVANRGEIPIRIFRTAHELSMQTVAIYSHEDRLSTHKQKADEAYVIGEVGQYTPVGAY 80 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + VD I P +G L E+ + A + ++G + DK Sbjct: 81 LAIDEIISIAQKHQVDFIHPG-YGFLSENSEFADKVVKAGITWIGPPAEVIDSVGDKVSA 139 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + L A + P + ++ G P+ +K A G G+ V + Sbjct: 140 RNLAAKANVPTVPGTPGPI--ETVEEALDFVNEYGYPVIIKAAFGGGGRGMRVVREGDDV 197 Query: 205 AIAVDLA------FEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A A + VE+ + + IE +L +++ E Sbjct: 198 ADAFQRATSEARTAFGNGTCFVERFLDKPKHIEVQLLADNHGNVVHLFERD--CSVQRRH 255 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ V + E+ D I AV+ + G + + +N EIN Sbjct: 256 QKVVE-----VAPAKTLPREVRDAILTDAVKLAKECGYRNAGTAEFLVDNQNRHYFIEIN 310 Query: 318 TLPGFTNISMYPKLWQASGLGYT 340 + + +G+ Sbjct: 311 PRIQVEHT----ITEEITGIDIV 329 >ref|NP_011453.1| (NC_001139) converts pyruvate to oxaloacetate; Pyc1p [Saccharomyces cerevisiae] sp|P11154|PYC1_YEAST PYRUVATE CARBOXYLASE 1 (PYRUVIC CARBOXYLASE 1) (PCB 1) pir||QYBYP pyruvate carboxylase (EC 6.4.1.1) 1 [validated] - yeast (Saccharomyces cerevisiae) emb|CAA96765.1| (Z72584) ORF YGL062w [Saccharomyces cerevisiae] Length = 1178 Score = 221 bits (563), Expect = 8e-57 Identities = 49/323 (15%), Positives = 99/323 (30%), Gaps = 25/323 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV----PGKHE 84 + +R ++ + + + + Y H A + +V P Sbjct: 21 KILVANRGEIPIRIFRTAHELSMQTVAIYSHEDRLSTHKQKADEAYVIGEVGQYTPVGAY 80 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + VD I P +G L E+ + A + ++G + DK Sbjct: 81 LAIDEIISIAQKHQVDFIHPG-YGFLSENSEFADKVVKAGITWIGPPAEVIDSVGDKVSA 139 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + L A + P + ++ G P+ +K A G G+ V + Sbjct: 140 RNLAAKANVPTVPGTPGPI--ETVEEALDFVNEYGYPVIIKAAFGGGGRGMRVVREGDDV 197 Query: 205 AIAVDLA------FEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A A + VE+ + + IE +L +++ E Sbjct: 198 ADAFQRATSEARTAFGNGTCFVERFLDKPKHIEVQLLADNHGNVVHLFERD--CSVQRRH 255 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ V + E+ D I AV+ + G + + +N EIN Sbjct: 256 QKVVE-----VAPAKTLPREVRDAILTDAVKLAKECGYRNAGTAEFLVDNQNRHYFIEIN 310 Query: 318 TLPGFTNISMYPKLWQASGLGYT 340 + + +G+ Sbjct: 311 PRIQVEHT----ITEEITGIDIV 329 >ref|NP_243653.1| (NC_002570) acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus halodurans] dbj|BAB06506.1| (AP001516) acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus halodurans] Length = 452 Score = 221 bits (562), Expect = 1e-56 Identities = 59/344 (17%), Positives = 116/344 (33%), Gaps = 23/344 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKHE 84 I + +R ++ + I + + + + D H+ + A + P K Sbjct: 1 MIKKLLVANRGEIAVRIIRACRELGIETVAVFSEADRDALHVRMADEAYCIGPTPSAKSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + L VD I P +G L E+ + N+ FVG A + KDV Sbjct: 61 LNFTNIMSVATLTEVDAIHPG-YGFLAENADFAEICGECNITFVGPSADAISKMGTKDVA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + ++ AG+ I P V ++G P+ +K G G+ +EE+ Sbjct: 120 RETMKRAGVPIVPGSEGII--ESVEDGLAVAEQIGYPVIIKATAGGGGKGIRVARNEEEL 177 Query: 205 AIAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + + V +E+ I R +E VL +++ GE Sbjct: 178 RKGINITQQEAATAFGNPGVYLEKYIEDFRHVEIQVLADNHGHVIHLGERD--CSIQRRL 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEI 316 K ++E AI + ++ AV A + + +G V+ + E+ Sbjct: 236 QKLLEE-----TPSPAITEKKRKEMGEAAVAAAKAVNYSGAGTVEFIYDHNNGDFYFMEM 290 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 NT + P +G+ ++ + ++ Sbjct: 291 NTRIQVEH----PVTEMVTGIDLIKEQIKVASGKPLSYKQEDVT 330 >ref|NP_533976.1| (NC_003305) 3-methylcrotonyl-CoA carboxylase alpha subunit [Agrobacterium tumefaciens str. C58 (U. Washington)] gb|AAL44292.1| (AE009278) 3-methylcrotonyl-CoA carboxylase alpha subunit [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 663 Score = 220 bits (561), Expect = 1e-56 Identities = 58/328 (17%), Positives = 109/328 (32%), Gaps = 23/328 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HE 84 + +R ++ I + + Y D H+AL A ++ P + Sbjct: 1 MFSKILIANRGEIACRIIRTAASMGIRTVAVYSDADRDAMHVALADEAIAIGPAPARASY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + I P +G L E+ A L F+G A A K Sbjct: 61 LDGEKIIAAAKASGAEAIHPG-YGFLSENAGFAEACASAGLVFIGPPPEAIRAMGGKSEA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K L+ AG+ I P + A K+G P+ +K + G G+ V + + Sbjct: 120 KALMATAGVPIVPGYHGD--EQAEKRLASEADKIGYPVLLKASAGGGGKGMRVVRQKHDF 177 Query: 205 AIAV------DLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A + LA + ++++E+ ++ R +E V + + + E Sbjct: 178 AAELAGAKREALAAFGNDRMLIEKYLERPRHVEVQVFADGHGNCVSLFERD--CSIQRRH 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E + ++ ++ A A + + G ++ L P E+N Sbjct: 236 QKVIEE-----APAPGLPDDLRQRMYDAATAAARAIDYRGAGTIEFLLDPSG-FYFMEMN 289 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITR 345 T + P +GL + R Sbjct: 290 TRLQVEH----PVTEYITGLDLVEWQLR 313 >ref|NP_107983.1| (NC_002678) 3-methylcrotonyl-CoA carboxylase biotin-containing subunit [Mesorhizobium loti] dbj|BAB54128.1| (AP003012) 3-methylcrotonyl-CoA carboxylase biotin-containing subunit [Mesorhizobium loti] Length = 694 Score = 220 bits (561), Expect = 2e-56 Identities = 60/349 (17%), Positives = 113/349 (32%), Gaps = 27/349 (7%) Query: 24 AKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA-QVPGK 82 + +R ++ I + V + Y H+ + A + G+ Sbjct: 39 GSMFSKILIANRGEIACRVIRTARKMGVRTVAVYSDADAKSLHVEMADEAVHIGPPSVGE 98 Query: 83 HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKD 142 + I P +G L E+ + A L F+G + A KD Sbjct: 99 SYLRGDRIVAAALSTGAQAIHPG-YGFLSENPDFVDQVVAAGLTFIGPSAASIRAMGLKD 157 Query: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEE 202 KRL+ AG+ + P A ++G P+ +K G G+ +V + Sbjct: 158 AAKRLMEKAGVPVVPGYHGEAQEIVL--LASKAREIGYPVLIKARAGGGGKGMRRVEHPD 215 Query: 203 QYAIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYA 255 ++ A+ A D +V+VE+ + R IE V G++ A E Sbjct: 216 DFSEALSSARREAKAAFGDDRVLVEKYVDKPRHIEVQVFGDNFGNAVHLYERD--CSAQR 273 Query: 256 YDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE-----NE 310 K I+E + P + + AV+A + +G +G ++ + + Sbjct: 274 RHQKVIEE-----APAPGMTPALRKAMTEAAVKAAKAIGYSGAGTIEFIVDASQGLKPDR 328 Query: 311 VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 E+NT + P +G + R+ + Sbjct: 329 FWFMEMNTRLQVEH----PVTEMVTGTDLVEWQLRVASGEKLPNTQSEI 373 >ref|NP_009777.1| (NC_001134) converts pyruvate to oxaloacetate; Pyc2p [Saccharomyces cerevisiae] sp|P32327|PYC2_YEAST PYRUVATE CARBOXYLASE 2 (PYRUVIC CARBOXYLASE 2) (PCB 2) pir||S46094 pyruvate carboxylase (EC 6.4.1.1) 2 - yeast (Saccharomyces cerevisiae) emb|CAA85182.1| (Z36087) ORF YBR218c [Saccharomyces cerevisiae] gb|AAC49147.1| (U35647) pyruvate carboxylase 2 [Saccharomyces cerevisiae] Length = 1180 Score = 220 bits (561), Expect = 2e-56 Identities = 48/331 (14%), Positives = 99/331 (29%), Gaps = 25/331 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV----PGKHE 84 + +R ++ + + + + Y H A + + P Sbjct: 22 KILVANRGEIPIRIFRSAHELSMRTIAIYSHEDRLSMHRLKADEAYVIGEEGQYTPVGAY 81 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + VD I P +G L E+ + A + ++G + DK Sbjct: 82 LAMDEIIEIAKKHKVDFIHPG-YGFLSENSEFADKVVKAGITWIGPPAEVIDSVGDKVSA 140 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + L A + P + ++ G P+ +K A G G+ V + Sbjct: 141 RHLAARANVPTVPGTPGPI--ETVQEALDFVNEYGYPVIIKAAFGGGGRGMRVVREGDDV 198 Query: 205 AIAVDLA------FEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A A + VE+ + + IE +L +++ E Sbjct: 199 ADAFQRATSEARTAFGNGTCFVERFLDKPKHIEVQLLADNHGNVVHLFERD--CSVQRRH 256 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ V + E+ D I AV+ + G + + +N EIN Sbjct: 257 QKVVE-----VAPAKTLPREVRDAILTDAVKLAKVCGYRNAGTAEFLVDNQNRHYFIEIN 311 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 + + +G+ ++ Sbjct: 312 PRIQVEHT----ITEEITGIDIVSAQIQIAA 338 >ref|NP_225100.1| (NC_000922) Muramate-Ala Ligase & D-Ala-D-Ala Ligase [Chlamydophila pneumoniae CWL029] ref|NP_300962.1| (NC_002491) muramate-Ala ligase/D-Ala-D-Ala ligase [Chlamydophila pneumoniae J138] ref|NP_445498.1| (NC_002179) UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase [Chlamydophila pneumoniae AR39] sp|Q9Z701|MUDD_CHLPN MURC/DDL BIFUNCTIONAL ENZYME [INCLUDES: UDP-N-ACETYLMURAMATE--ALANINE LIGASE (UDP-N-ACETYLMURAMOYL-L-ALANINE SYNTHETASE); D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE)] pir||D72022 UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase CP0961 [imported] - Chlamydophila pneumoniae (strains CWL029 and AR39) gb|AAD19043.1| (AE001670) Muramate-Ala Ligase & D-Ala-D-Ala Ligase [Chlamydophila pneumoniae CWL029] gb|AAF38741.1| (AE002254) UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase [Chlamydophila pneumoniae AR39] dbj|BAA99113.1| (AP002548) muramate-Ala ligase/D-Ala-D-Ala ligase [Chlamydophila pneumoniae J138] Length = 809 Score = 220 bits (561), Expect = 2e-56 Identities = 100/368 (27%), Positives = 165/368 (44%), Gaps = 28/368 (7%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +KL +G+V GGKS EH++SL SA+++ I +DV I++QG W Sbjct: 450 KKLSIGLVCGGKSCEHDISLLSAQHVSKYISPEFYDVSYFIINRQGLWRTGK-------- 501 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 + + G A VD +FP++HG GEDG++QG Sbjct: 502 ---------DFPHLIEETQGDSPLSSEIASALAK---VDCLFPVLHGPFGEDGTIQGFFE 549 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT---RANRHNISFAEVESKL 178 + P+ G + +A MDK +TKR+ G+ + P+ L + + Sbjct: 550 ILGKPYAGPSLSLAATAMDKLLTKRIASAVGVPVVPYQPLNLCFWKRNPELCIQNLIETF 609 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQ-GIKGREIECAVLGND 237 P+ VK A+ GSS+G+ V +E+ + AF +D V VE+ + REIE + +G+ Sbjct: 610 SFPMIVKTAHLGSSIGIFLVRDKEELQEKISEAFLYDTDVFVEESRLGSREIEVSCIGHS 669 Query: 238 NPQASTCG--EIVLTSDFYAYDTKY--IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 + G E S F Y KY D AK+ ++ E D +R +A + Y+ + Sbjct: 670 SSWYCMAGPNERCGASGFIDYQEKYGFDGIDCAKISFDLQLSQESLDCVRELAERVYRAM 729 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G AR+D FL E ++E+N +PG T S + + + +G ++ I AL + Sbjct: 730 QGKGSARIDFFLDEEGNYWLSEVNPIPGMTAASPFLQAFVHAGWTQEQIVDHFIIDALHK 789 Query: 354 HAADNALK 361 ++ Sbjct: 790 FDKQQTIE 797 >pir||T39734 pyruvate carboxylase (EC 6.4.1.1) [similarity] - fission yeast (Schizosaccharomyces pombe) emb|CAB52809.1| (AL109846) pyruvate carboxylase (EC 6.4.1.1) [Schizosaccharomyces pombe] Length = 1185 Score = 219 bits (559), Expect = 3e-56 Identities = 44/344 (12%), Positives = 103/344 (29%), Gaps = 25/344 (7%) Query: 18 EVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA 77 + S + + +R ++ + + + + Y H + + Sbjct: 24 DRSSLLGEKFTKVLVANRSEIAIRVFRTAHELSMHTVAIYSYEDRLSMHRQKADESYPIG 83 Query: 78 QV----PGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVL 133 +V P + + + +++ P +G L E+ + A + FVG Sbjct: 84 KVGQYSPVGAYLAIDEIVSIAKRTGANLVHPG-YGFLSENAEFARKVNEAGMQFVGPSPE 142 Query: 134 ASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSV 193 + DK + + G+ + P H + GLP+ +K A G Sbjct: 143 VIDSLGDKTKARAIAIRCGVPVVPGTPGPV--EHYEEAEAFVKEYGLPVIIKAAMGGGGR 200 Query: 194 GVSKVTSEEQYAIAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGE 246 G+ V S + + + A D V +E+ + + IE ++ + E Sbjct: 201 GMRVVRSADTLKESFERARSEALASFGDGTVFIERFLDKPKHIEIQLMADKAGNVIHLHE 260 Query: 247 IVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT 306 K ++ + + P+I + A++ + + + L Sbjct: 261 RD--CSVQRRHQKVVE-----IAPAKDLDPKIRQALYDDAIKIAKEVKYCNAGTAEFLLD 313 Query: 307 PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + EIN + + +G+ + Sbjct: 314 QKGRHYFIEINPRIQVEHT----ITEEITGVDIVSAQLHVAAGF 353 >ref|NP_069058.1| (NC_000917) biotin carboxylase (acc) [Archaeoglobus fulgidus] sp|O30019|PYCA_ARCFU PYRUVATE CARBOXYLASE SUBUNIT A (PYRUVIC CARBOXYLASE A) pir||D69277 biotin carboxylase (acc) homolog - Archaeoglobus fulgidus gb|AAB91012.1| (AE001090) biotin carboxylase (acc) [Archaeoglobus fulgidus] Length = 506 Score = 219 bits (558), Expect = 3e-56 Identities = 51/342 (14%), Positives = 106/342 (30%), Gaps = 24/342 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV-PGKHE 84 + +R ++ + + + + Y H + + P Sbjct: 1 MFSKILVANRGEIAVRVMRACRELGIKTVGVYSSADKRAFHRVYADECYYIGKADPRDSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + I P +G L E+ + F+G K + Sbjct: 61 LNIDRIIEVAKKSGAEAIHPG-YGFLAENAEFAERCEEEGIVFIGPSPEVIRIAGSKVRS 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + ++ AG+ + P E K+G P+ VK + G +G+ V S+E+ Sbjct: 120 RESMQRAGVPVIPGSP---KIDTVDEAKEWAEKIGYPVAVKASGGGGGIGIVVVNSQEEL 176 Query: 205 AIAVD------LAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A ++ D V +E+ + R IE +L + + GE Sbjct: 177 EEAFRKSKKLGESYFKDSTVYLEKYLARPRHIEVQILADQHGNVIHLGER--ECSIQRRH 234 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E A+ E+ +++ +AV+ + +G + EIN Sbjct: 235 QKLIEE-----APSPALNEEMREELGKLAVKGAREIGYTNAGTFEFLY-ENGNFYFLEIN 288 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 + + +G+ R+ RH ++ Sbjct: 289 SRLQVEHT----ITEVVTGIDIVKYQIRIAYGEELRHGQEDV 326 >ref|NP_518386.1| (NC_003295) PROBABLE ACYL-COA CARBOXYLASE ALPHA CHAIN PROTEIN [Ralstonia solanacearum] emb|CAD13793.1| (AL646058) PROBABLE ACYL-COA CARBOXYLASE ALPHA CHAIN PROTEIN [Ralstonia solanacearum] Length = 712 Score = 219 bits (558), Expect = 4e-56 Identities = 60/342 (17%), Positives = 110/342 (31%), Gaps = 23/342 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 + +R ++ + + + Y D H+A A + + + + Sbjct: 38 MFTKLLIANRGEIACRVAATCRRLGIRTVAVYSDADVDARHVAACDEAIHIGEPAARDSY 97 Query: 86 Q-LIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 I P +G L E+ + A L FVG A A K Sbjct: 98 LRADRILEAARATGAQAIHPG-YGFLSENEAFARACSEAGLVFVGPPASAIEAMGSKSAA 156 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K L+ AG+ + P + ++G P+ +K + G G+ V + E + Sbjct: 157 KALMETAGVPLVPGYHGDNQDAA--FLRAQADRIGYPVLIKASAGGGGKGMRVVETGEAF 214 Query: 205 AIAVDLAF------EFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A+ D +V++E+ + + R IE V + A E Sbjct: 215 AAALASVKREASSSFGDDRVLIEKYLTRPRHIEIQVFADGFGDAVYLFERD--CSVQRRH 272 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E + PE + AV A + +G G V+ + + E+N Sbjct: 273 QKVLEE-----APAPGMTPERRRAMGEAAVAAARAVGYVGAGTVEFIVDEDGTFYFMEMN 327 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 T + P +G + R + A +A Sbjct: 328 TRLQVEH----PVTEMITGEDLVEWQLR-VACGEPLPRAQDA 364 >ref|NP_509293.1| (NM_076892) Propionyl-coA carboxylase alpha chain precursor [Caenorhabditis elegans] pir||T16187 hypothetical protein F27D9.5 - Caenorhabditis elegans gb|AAA93384.1| (U49829) Hypothetical protein F27D9.5 [Caenorhabditis elegans] Length = 724 Score = 219 bits (558), Expect = 4e-56 Identities = 57/325 (17%), Positives = 115/325 (34%), Gaps = 22/325 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKHEHQL 87 + +R ++ I + + + + H+ + A + + P K + Sbjct: 51 KILIANRGEIACRVIKTARAMGIKTVAVHSDVDSNSLHVKMADEAVCVGEAPTAKSYLRA 110 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + P +G L E+ L A F+G + A DK +K++ Sbjct: 111 DRILQAVEDTGAQAVHPG-YGFLSENTKFAAELEKAGAKFIGPNSKAILDMGDKIHSKKI 169 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 A +++ P A+ +V +G P+ +K + G G+ +++Q Sbjct: 170 ATAARVSMIPGYDGEIADE--DMCVKVSRDIGYPVMIKASAGGGGKGMRVAWNDKQAREG 227 Query: 208 VDLAFE------FDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 L+ + D +++VE+ I R IE VL + + A E + K Sbjct: 228 YRLSKQEAASSFGDDRMLVEKFIDNPRHIEMQVLCDKHGNALWLNER--ECSIQRRNQKV 285 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 I+E + + PE+ K+ AVQ + +G V+ + + E+NT Sbjct: 286 IEE-----APSSFVPPEMRRKMGEQAVQLAKAVGYDSAGTVEFLVDSQRNFYFLEMNTRL 340 Query: 321 GFTNISMYPKLWQASGLGYTDLITR 345 + P +G+ + R Sbjct: 341 QVEH----PITECITGIDIVQQMLR 361 >dbj|BAA11239.1| (D78170) pyruvate carboxylase [Schizosaccharomyces pombe] Length = 1185 Score = 218 bits (556), Expect = 6e-56 Identities = 44/344 (12%), Positives = 103/344 (29%), Gaps = 25/344 (7%) Query: 18 EVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA 77 + S + + +R ++ + + + + Y H + + Sbjct: 24 DRSSLLGEKFTKVLVANRSEIAIRVFRTAHELSMHTVAIYSYEDILSMHRQKADESYPIG 83 Query: 78 QV----PGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVL 133 +V P + + + +++ P +G L E+ + A + FVG Sbjct: 84 KVGQYSPVGAYLAIDEIVSIAKRTGANLVHPG-YGFLSENAEFARKVNEAGMQFVGPSPE 142 Query: 134 ASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSV 193 + DK + + G+ + P H + GLP+ +K A G Sbjct: 143 VIDSLGDKTKARAIAIRCGVPVVPGTPGPV--EHYEEAEAFVKEYGLPVIIKAAMGGGGR 200 Query: 194 GVSKVTSEEQYAIAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGE 246 G+ V S + + + A D V +E+ + + IE ++ + E Sbjct: 201 GMRVVRSADTLKESFERARSEALASFGDGTVFIERFLDKPKHIEIQLMADKAGNVIHLHE 260 Query: 247 IVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT 306 K ++ + + P+I + A++ + + + L Sbjct: 261 RD--CSVQRRHQKVVE-----IAPAKDLDPKIRQALYDDAIKIAKEVKYCNAGTAEFLLD 313 Query: 307 PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + EIN + + +G+ + Sbjct: 314 QKGRHYFIEINPRIQVEHT----ITEEITGVDIVSAQLHVAAGF 353 >ref|NP_407114.1| (NC_003143) biotin carboxylase [Yersinia pestis] emb|CAC93128.1| (AJ414158) biotin carboxylase [Yersinia pestis] Length = 449 Score = 218 bits (555), Expect = 8e-56 Identities = 49/342 (14%), Positives = 102/342 (29%), Gaps = 22/342 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 + + +R ++ L + + + + + + D H+ L + P K Sbjct: 1 MLDKIVIANRGEIALRILRACKELGIKTVAVHSVADRDLKHVLLADETVCIGPAPSVKSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + + P +G L E+ + + F+G DK Sbjct: 61 LNIPAIISAAEITGAVAVHPG-YGFLSENADFAEQVERSGFIFIGPRAETIRLMGDKVSA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 ++ AG+ P ++ + ++G P+ +K + G G+ V ++ Sbjct: 120 ISAMKKAGVPCVPGSDGPLSDDTTKN-KAFAKRIGYPVIIKASGGGGGRGMRVVRHDKDL 178 Query: 205 AI------AVDLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A + V +E+ + R IE +L + A E Sbjct: 179 EESINMTRAEAKAAFNNDMVYMEKYLENPRHIEVQILADGQGNAIYLAERD--CSMQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E I E+ I +A +G G + E E+N Sbjct: 237 QKVVEE-----APAPGITSEMRRYIGERCAKACMEIGYRGAGTFEFLY-ENGEFYFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 T + +G+ R+ D Sbjct: 291 TRIQVEHTV----TEMITGIDLIKEQLRIAAGQPLSIKQDEV 328 >emb|CAA42544.1| (X59890) pyruvate carboxylase [Saccharomyces cerevisiae] Length = 1185 Score = 218 bits (555), Expect = 8e-56 Identities = 48/331 (14%), Positives = 97/331 (28%), Gaps = 25/331 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV----PGKHE 84 + +R ++ + + + + Y H A + + P Sbjct: 22 KILVANRGEIPIRIFRSAHELSMRTIAIYSHEDRLSMHRLKADEAYVIGEEGQYTPVGAY 81 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + VD I P +G L E+ + A + ++G + DK Sbjct: 82 LAMDEIIEIAKKHKVDFIHPG-YGFLSENSEFADKVVKAGITWIGPPAEVIESVGDKVSA 140 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + L A + P + ++ G P+ +K A G G+ V + Sbjct: 141 RHLAARANVPTVPGTPGPI--ETVQEALDFVNEYGYPVIIKAAFGGGGRGMRVVREGDDV 198 Query: 205 AIAVDLA------FEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A A + VE+ + + IE +L + + E Sbjct: 199 ADAFQRATSEARTAFGNGTCFVERFLDKPKHIEVQLLADKHGNVVHLFERD--CSVQRRH 256 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ V E+ D I AV+ + G + + +N EIN Sbjct: 257 QKVVE-----VAPAKTFPREVRDAILTDAVKLAKVCGYRNAGTAEFLVDNQNRHYFIEIN 311 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 + + +G+ ++ Sbjct: 312 PRIQVEHT----ITEEITGIDIVSAQIQIAA 338 >ref|NP_282187.1| (NC_002163) putative pyruvate carboxylase A subunit [Campylobacter jejuni] pir||B81306 probable pyruvate carboxylase (EC 6.4.1.1) A chain Cj1037c [imported] - Campylobacter jejuni (strain NCTC 11168) emb|CAB73293.1| (AL139077) putative pyruvate carboxylase A subunit [Campylobacter jejuni] Length = 481 Score = 217 bits (554), Expect = 1e-55 Identities = 52/341 (15%), Positives = 110/341 (32%), Gaps = 20/341 (5%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 I + +R ++ + I H+ + + + H+ + A + + Sbjct: 3 QIHKILIANRAEIAVRVIRACRDLHIKSVAVFTEPDRECLHVKIADEAYRIGTDAIRGYL 62 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + D I P +G L E+ A + F+G +K++ + Sbjct: 63 DVARIVEIAKACGADAIHPG-YGFLSENYEFAKACEDAGIIFIGPKSEVIHKMGNKNIAR 121 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 +L+ G+ I P + K+G P+ +K + G G+ V E+ Sbjct: 122 KLMAKNGIPIVPGTEKLN-SYSMEEIKIFAEKIGYPVILKASGGGGGRGIRVVHKEQDLE 180 Query: 206 IAVDLAF------EFDHKVIVEQG-IKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A + + +V +E+ + R IE +LG++ E Sbjct: 181 NAFESCKREALTYFNNDEVFMEKYVVNPRHIEFQILGDNYGNIIHLCERD--CSIQRRHQ 238 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K I+ + I+ + + AV A + +G ++ L N E+NT Sbjct: 239 KVIE-----IAPCPGISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDDYNRFYFMEMNT 293 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 + P + +G+ R+ + + Sbjct: 294 RIQVEH----PITEEITGIDLIVRQIRIAAGEILDLEQSDI 330 >pir||T06565 acetyl-CoA carboxylase (EC 6.4.1.2) biotin carboxylase chain - soybean (fragment) gb|AAA85742.1| (U34393) acetyl-CoA carboxylase biotin carboxylase subunit [Glycine max] Length = 289 Score = 217 bits (553), Expect = 1e-55 Identities = 46/298 (15%), Positives = 95/298 (31%), Gaps = 17/298 (5%) Query: 33 KSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA-QVPGKHEHQLIDAQ 91 +R + +L I + + + Y D H+ A + + Sbjct: 1 ANRGETLLRVIRTCREMGIKTVAVYSTADKDSLHVRFADEAACIGKPAGVDSYLNIPHIM 60 Query: 92 NGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDA 151 + D + P +G L E+ + + F+G DK K + A Sbjct: 61 AAAEITNADAVHPG-YGFLAENAKFSQICADHGIKFIGPTPDMINNMGDKITAKETMIKA 119 Query: 152 GLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLA 211 G+ + P + ++ +G P+ +K G G+ V E + A + A Sbjct: 120 GVPVVPGSGGL-LESLEQAKDLAKNHVGYPVILKATAGGGGEGMRVVWEESELERAYNTA 178 Query: 212 F------EFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDED 264 + + +E+ + + R IE V G+ E K ++E Sbjct: 179 KAEAAASFKNDGIYMEKFVEEPRHIEIQVAGDQYGNVCHLSERD--CSIQRRHQKLVEES 236 Query: 265 GAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGF 322 + E+ +K+ A A++A + + ++ + E+NT Sbjct: 237 -----PSPFMTDELREKMGAAAIKAASAINYESVGTIEFLVDKHRNFYFMEMNTRLQV 289 >ref|NP_540842.1| (NC_003317) acetyl-CoA carboxylase alpha chain / propionyl-CoA carboxylase alpha chain [Brucella melitensis] gb|AAL53106.1| (AE009626) acetyl-CoA carboxylase alpha chain / propionyl-CoA carboxylase alpha chain [Brucella melitensis] Length = 678 Score = 217 bits (553), Expect = 1e-55 Identities = 62/335 (18%), Positives = 113/335 (33%), Gaps = 27/335 (8%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-H 83 + +R ++ I + ++ + Y H+ + A + Sbjct: 23 VMFQKILIANRGEIACRVIRTARKLGIATVAIYSDADARALHVEMADEAVRVGPAASAQS 82 Query: 84 EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + + I P +G L E+ + + A L F+G A A KD Sbjct: 83 YLNVDAIIKAAKETGAEAIHPG-YGFLSENPAFVDAVEEAGLIFIGPSAKAIRAMGLKDA 141 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 K L+ AG+ + P + ++ P+ +K G G+ +V S Sbjct: 142 AKALMEKAGVPVVPGYHGDNQDGA--FLKSEADRITYPVLIKARAGGGGKGMRRVDSAAD 199 Query: 204 YAIAVDLAF------EFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 +A A++ A D V+VE+ + K R IE V G+++ A E Sbjct: 200 FAAALESARREAEASFGDGAVLVEKYMAKPRHIEVQVFGDNHGNAVHLFERD--CSLQRR 257 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE-----NEV 311 K I+E + E+ + AV+A T+G +G V+ + Sbjct: 258 HQKVIEE-----APAPGMTEEMRAAMGEAAVKAALTIGYSGAGTVEFIADVSEGLRPDRF 312 Query: 312 VINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 E+NT + P +GL + R+ Sbjct: 313 FFMEMNTRLQVEH----PVTEAITGLDLVEWQLRV 343 >ref|NP_464882.1| (NC_003210) acetyl-CoA carboxylase subunit (biotin carboxylase subunit) [Listeria monocytogenes EGD-e] emb|CAC99435.1| (AL591978) acetyl-CoA carboxylase subunit (biotin carboxylase subunit) [Listeria monocytogenes] Length = 454 Score = 217 bits (553), Expect = 1e-55 Identities = 70/347 (20%), Positives = 123/347 (35%), Gaps = 24/347 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 I + +R ++ + I + V + Y + HI L A + K + Sbjct: 1 MIKKVLVANRGEIAVRIIRAAKELGVETVAIYSEADREALHIQLADEAYCVGPAATKDSY 60 Query: 86 -QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + L D I P +G L E+ + N+ F+G A + KDV Sbjct: 61 LNMSNIISLAVLTNCDAIHPG-YGFLAENADFAELCEDCNITFIGPSASAISQMGTKDVA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + +R AG+ I P A+ ++ K+G P+ +K G G+ +EE+ Sbjct: 120 RETMRKAGVPIVPGSQGIVAD--VEDGKKIAKKIGYPVIIKATAGGGGKGIRVAENEEKL 177 Query: 205 AIAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + A D V +E+ I R +E VL +++ GE Sbjct: 178 ISGIHTTQQEAEAAFGDPGVYLEKYIQDFRHVEIQVLADNHGNVIHLGERD--CSIQRRL 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEI 316 K I+E AI + K+ AV+A + + +G ++ EN E+ Sbjct: 236 QKLIEES-----PSPAIDEKTRQKMGKAAVKAAKAVNYSGAGTIEFIYDHHENNFYFMEM 290 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALKTT 363 NT + P +G+ L+ E +K T Sbjct: 291 NTRIQVEH----PVTELVTGIDLVK-QQFLVASGEELQIKQADVKLT 332 >ref|NP_439133.1| (NC_000907) acetyl-CoA carboxylase, biotin carboxylase (accC) [Haemophilus influenzae Rd] sp|P43873|ACCC_HAEIN BIOTIN CARBOXYLASE (A SUBUNIT OF ACETYL-COA CARBOXYLASE (ACC) pir||F64105 biotin carboxylase (EC 6.3.4.14) - Haemophilus influenzae (strain Rd KW20) gb|AAC22632.1| (U32778) acetyl-CoA carboxylase, biotin carboxylase (accC) [Haemophilus influenzae Rd] Length = 448 Score = 217 bits (552), Expect = 1e-55 Identities = 55/342 (16%), Positives = 108/342 (31%), Gaps = 22/342 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKHE 84 + + +R ++ L + + + + + D H+ L + P K Sbjct: 1 MLEKVVIANRGEIALRILRACKELGIKTVAVHSTADRDLKHVLLADETICIGPAPSAKSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + D I P +G L E+ + + F+G DK Sbjct: 61 LNIPAIIAAAEVTGADAIHPG-YGFLSENADFAEQVERSGFTFIGPTADVIRLMGDKVSA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + ++ AG+ P +N + E+ ++G P+ +K + G G+ V SE+ Sbjct: 120 IKAMKKAGVPCVPGSDGPVSNDIAKN-KEIAKRIGYPIIIKASGGGGGRGMRVVRSEDAL 178 Query: 205 AI------AVDLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A + V +E+ + R +E VL + + A E Sbjct: 179 EESIAMTKAEAKAAFNNDMVYMEKYLENPRHVEIQVLADTHGNAVYLAERD--CSMQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E I E+ I + A +G G + E E+N Sbjct: 237 QKVVEE-----APAPGITEEVRRDIGSRCANACVEIGYRGAGTFEFLY-ENGEFYFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 T + P +G+ R+ ++ Sbjct: 291 TRIQVEH----PVTEMITGVDLVKEQLRIAAGLPISFKQEDI 328 >ref|NP_246028.1| (NC_002663) AccC [Pasteurella multocida] gb|AAK03175.1| (AE006150) AccC [Pasteurella multocida] Length = 448 Score = 217 bits (552), Expect = 2e-55 Identities = 52/342 (15%), Positives = 105/342 (30%), Gaps = 22/342 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 + + +R ++ L + + + + + + H+ L + P K Sbjct: 1 MLEKVVIANRGEIALRILRACKELGIKTVAVHSTADRELKHVLLADETVCIGPAPSTKSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + D I P +G L E+ + + F+G DK Sbjct: 61 LNIPAIIAAAEVTGADAIHPG-YGFLSENADFAEQVERSGFIFIGPTADVIRLMGDKVSA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 ++ +G+ P + + E+ ++G P+ +K + G G+ V E Sbjct: 120 IEAMKKSGVPCVPGSDGPVGSDMVKN-KEIAKRIGYPVIIKASGGGGGRGMRVVRDEASL 178 Query: 205 AI------AVDLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A + V +E+ + R IE VL + + A E Sbjct: 179 EESIAMTKAEAKAAFNNDMVYMEKYLENPRHIEIQVLADTHGNAIYLAERD--CSMQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E I+ E+ I +A +G G + E E+N Sbjct: 237 QKVVEE-----APAPGISDEVRRDIGERCAKACVEIGYRGAGTFEFLY-ENGEFYFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 T + P +G+ R+ ++ Sbjct: 291 TRIQVEH----PVTEMITGVDLVKEQLRIAAGLPISIKQEDV 328 >gb|AAA67356.1| (U12536) 3-methylcrotonyl-CoA carboxylase precursor [Arabidopsis thaliana] Length = 715 Score = 217 bits (552), Expect = 2e-55 Identities = 52/329 (15%), Positives = 99/329 (29%), Gaps = 44/329 (13%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ--VPGKHE 84 I + +R ++ + + + + Y D H+ A + Sbjct: 38 IEKILVANRGEIACRIMRTAKRLGIQTVAVYSDADRDSLHVKSADEADRIGPPSAKRLSY 97 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + I P +G L E + + L F+G A DK + Sbjct: 98 LSGVTIMEAAARTGAQAIHPG-YGFLSESSDFAQLCEDSGLTFIGPPASAIRDMGDKSAS 156 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 KR++ AG+ + P + K+G P+ +KP + G G+ V S + + Sbjct: 157 KRIMGAAGVPLVPGYHGH--EQDIDHMKSEAEKIGYPIIIKPTHGGGGKGMRIVQSGKDF 214 Query: 205 AIAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A + A + +++E+ I + R IE + G+ + E Sbjct: 215 ADSFLGAQREAAASFGVNTILLEKYITRPRHIEVQIFGDKHGNVLHLYERD--CSVQRRH 272 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEI 316 K I+E A +G V+ + ++ E+ Sbjct: 273 QKIIEEAPA-------------------------AVGYYNAGTVEFIVDTESDQFYFMEM 307 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITR 345 NT + P G + R Sbjct: 308 NTRLQVEH----PVTEMIVGQDLVEWQIR 332 >ref|NP_214048.1| (NC_000918) pyruvate carboxylase n-terminal domain [Aquifex aeolicus] pir||A70432 biotin carboxylase (EC 6.3.4.14) [similarity] - Aquifex aeolicus gb|AAC07446.1| (AE000744) pyruvate carboxylase n-terminal domain [Aquifex aeolicus] Length = 472 Score = 217 bits (552), Expect = 2e-55 Identities = 55/344 (15%), Positives = 109/344 (30%), Gaps = 22/344 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 + +R ++ + I + + + Y H+ L A + P Sbjct: 1 MFNKVLVANRGEIAVRIIRACKELGIPTVAIYNEVESTARHVKLADEAYMIGTDPLDTYL 60 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 N D I P +G L E+ M A + F+G DK +K Sbjct: 61 NKQRIINLALEVGADAIHPG-YGFLAENAEFAKMCEEAGITFIGPHWKVIELMGDKARSK 119 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 +++ AG+ + P + ++G P+ +K G G+ +EE+ Sbjct: 120 EVMKKAGVPVVPGSDGVLK--SLEEAKALAREIGYPVLLKATAGGGGRGIRICRNEEELV 177 Query: 206 IAVDLA------FEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 + A +++E+ I + IE VLG+ + GE + Sbjct: 178 KNYEQASREAEKAFGRGDLLLEKFIENPKHIEYQVLGDKHGNVIHLGERD--CSIQRRNQ 235 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K ++ + + PE + I +A + +G ++ E + E+NT Sbjct: 236 KLVE-----IAPSLILTPEKREYYGNIVTKAAKEIGYYNAGTMEFIADQEGNLYFIEMNT 290 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALKT 362 + P +G+ + I +K Sbjct: 291 RIQVEH----PVSEMVTGIDIVKWQIK-IAAGEPLTIKQEDVKF 329 >ref|NP_217017.1| (NC_000962) accA1 [Mycobacterium tuberculosis H37Rv] ref|NP_337066.1| (NC_002755) acetyl/propionyl-CoA carboxylase, alpha subunit [Mycobacterium tuberculosis CDC1551] sp|P46401|BCCA_MYCTU ACETYL-/PROPIONYL-COENZYME A CARBOXYLASE ALPHA CHAIN [INCLUDES: BIOTIN CARBOXYLASE ; BIOTIN CARBOXYL CARRIER PROTEIN (BCCP)] pir||B55579 biotin carboxyl carrier protein - Mycobacterium tuberculosis emb|CAA79609.1| (Z19549) biotin carboxyl carrier protein [Mycobacterium tuberculosis] emb|CAB08919.1| (Z95556) accA1 [Mycobacterium tuberculosis H37Rv] gb|AAK46880.1| (AE007094) acetyl/propionyl-CoA carboxylase, alpha subunit [Mycobacterium tuberculosis CDC1551] Length = 654 Score = 216 bits (551), Expect = 2e-55 Identities = 58/345 (16%), Positives = 116/345 (32%), Gaps = 24/345 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 + +R ++ + I + + + Y D H+ +A L P + Sbjct: 1 MFDTVLVANRGEIAVRVIRTLRRLGIRSVAVYSDPDVDARHVLEADAAVRLGPAPARESY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + I P +G L E+ A + F+G A DK Sbjct: 61 LDIGKVLDAAARTGAQAIHPG-YGFLAENADFAAACERARVVFLGPPARAIEVMGDKIAA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K + + + P + RA + + +++G P+ +KP+ G G+ V + Sbjct: 120 KNAVAAFDVPVVPGVA--RAGLTDDALVTAAAEVGYPVLIKPSAGGGGKGMRLVQDPARL 177 Query: 205 AIAVDLAF------EFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A+ A D + +E+ + + R IE VL + + GE Sbjct: 178 PEALVSARREAMSSFGDDTLFLERFVLRPRHIEVQVLADAHGNVVHLGER--ECSLQRRH 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE--NEVVINE 315 K I+E + P+ ++I A + + G V+ ++ + +E E Sbjct: 236 QKVIEE-----APSPLLDPQTRERIGVAACNTARCVDYVGAGTVEFIVSAQRPDEFFFME 290 Query: 316 INTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 +NT + P +GL + R+ A ++ Sbjct: 291 MNTRLQVEH----PVTEAITGLDLVEWQLRVGAGEKLGFAQNDIE 331 >emb|CAC19838.1| (AJ009972) pyruvate carboxylase [Aspergillus niger] Length = 1192 Score = 216 bits (551), Expect = 2e-55 Identities = 45/327 (13%), Positives = 101/327 (30%), Gaps = 25/327 (7%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ----VP 80 + +R ++ + + + + Y H A + + P Sbjct: 39 MQFQKILVANRGEIPIRIFRTAHELSLQTVAVYSHEDHLSMHRQKADEAYMIGKRGQYTP 98 Query: 81 GKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMD 140 + + V +I P +G L E+ + + + FVG + D Sbjct: 99 VGAYLAIDEIVKIALEHGVHLIHPG-YGFLSENAEFARKVEQSGMVFVGPTPQTIESLGD 157 Query: 141 KDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTS 200 K ++L + + P G P+ +K A G G+ V Sbjct: 158 KVSARQLAIRCDVPVVPGTPGPV--ERYEEVKAFTDTYGFPIIIKAAFGGGGRGMRVVRD 215 Query: 201 EEQYAIAVDLA------FEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDF 253 + + + + A + V VE+ + + IE +LG+++ E Sbjct: 216 QAELRDSFERATSEARSAFGNGTVFVERFLDRPKHIEVQLLGDNHGNVVHLFERD--CSV 273 Query: 254 YAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVI 313 K ++ + + ++ D+I A AV+ +++ + + +N Sbjct: 274 QRRHQKVVE-----IAPAKDLPADVRDRILADAVKLAKSVNYRNAGTAEFLVDQQNRYYF 328 Query: 314 NEINTLPGFTNISMYPKLWQASGLGYT 340 EIN + + +G+ Sbjct: 329 IEINPRIQVEHT----ITEEITGIDIV 351 >emb|CAB87214.1| (AL163641) acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces coelicolor A3(2)] Length = 646 Score = 216 bits (551), Expect = 2e-55 Identities = 62/333 (18%), Positives = 110/333 (32%), Gaps = 24/333 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 + +R ++ + I V + + D H+ A + P + Sbjct: 1 MFDTVLVANRGEIAVRVIRTLRSMGVRSVAVFSDADADARHVREADDAVRIGPAPATESY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + P +G L E+ A L F+G A A DK Sbjct: 61 LSVERLLAAAARTGAQAVHPG-YGFLAENAGFARACEEAGLVFIGPSADAIALMGDKIRA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K +R AG+ + P + + + A+ ++G P+ +KP+ G G+ V Sbjct: 120 KETVRAAGVPVVPGSSGSGL--TDEQLADAAREIGTPVLLKPSAGGGGKGMRLVRDTAVL 177 Query: 205 AIAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A + A D ++VE+ I R IE VL + + GE Sbjct: 178 ADEIAAARREARASFGDDTLLVERWIDRPRHIEIQVLADGHGGVVHLGER--ECSLQRRH 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPEN--EVVINE 315 K I+E + + AVQA ++ G G V+ + + + E Sbjct: 236 QKVIEE-----APSVLLDEATRAAMGEAAVQAARSCGYRGAGTVEFIVPGSDPSQYYFME 290 Query: 316 INTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 +NT + P +GL + R+ Sbjct: 291 MNTRLQVEH----PVTELVTGLDLVEWQLRVAA 319 >ref|NP_420982.1| (NC_002696) propionyl-CoA carboxylase, alpha subunit [Caulobacter crescentus] gb|AAK24150.1| (AE005890) propionyl-CoA carboxylase, alpha subunit [Caulobacter crescentus] Length = 669 Score = 216 bits (551), Expect = 2e-55 Identities = 52/339 (15%), Positives = 108/339 (31%), Gaps = 25/339 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 + +R ++ + I + + Y + + + P + Sbjct: 1 MFSKILIANRGEIAVRVIKTCRRLGIKTVVVYSDADAGSLAVEMADETVHIGASPANQSY 60 Query: 86 QL-IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + P G L E+ + F+G + A +A DK + Sbjct: 61 LVADKIIAACKQTGAQAVHPGF-GFLSENAGFAQRCADEGIVFIGPNPGAISAMGDKIES 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K+ + AG++ P A+ ++ ++G P+ +K + G G+ + + Sbjct: 120 KKFAQAAGVSCVPGHIGEIADTAE--AVKISEEIGYPVMIKASAGGGGKGIRVAWTRKDV 177 Query: 205 AIAV------DLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A D ++ +E+ I+ R IE VLG+ + E + Sbjct: 178 EEGFPAVRAEAKASFGDDRIFIEKFIESPRHIEIQVLGDKHGNVVHLFER--ECSIQRRN 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E + + + A AV + + V+ + E+N Sbjct: 236 QKVIEE-----APSPLLDEATRNAMGAQAVALAKAVNYDSAGTVEFVAGQDKSFFFLEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 T + P +GL L+ ++I A A Sbjct: 291 TRLQVEH----PVTELITGLD---LVEQMIRSAYGEKMA 322 >gb|AAC69197.1| (AF097728) pyruvate carboxylase [Aspergillus terreus] Length = 1193 Score = 216 bits (549), Expect = 4e-55 Identities = 48/336 (14%), Positives = 103/336 (30%), Gaps = 26/336 (7%) Query: 17 HEVSLQSAKN-IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATS 75 H + SA + +R ++ + + + + + H A Sbjct: 31 HRLRANSAIMQFQKILVANRGEIPIRIFRTAHELSLQTVAIFSHEDRLSMHRQKADEAYM 90 Query: 76 LA----QVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSD 131 + P + V +I P +G L E+ + A + FVG Sbjct: 91 IGHRGQYTPVGAYLAADEIVKIALEHGVHLIHPG-YGFLSENADFARKVEKAGMVFVGPT 149 Query: 132 VLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGS 191 + DK ++L + + P G P+ +K A G Sbjct: 150 PDTIDSLGDKVSARQLAIRCNVPVVPGTEGPV--ERYEEVKAFTDTYGFPIIIKAAFGGG 207 Query: 192 SVGVSKVTSEEQYAIAVDLA------FEFDHKVIVEQGIK-GREIECAVLGNDNPQASTC 244 G+ V ++ + + A + V VE+ + + IE +LG+++ Sbjct: 208 GRGMRVVRNQADLRDSFERATSEARSAFGNGTVFVERFLDKPKHIEVQLLGDNHGNVVHL 267 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 E K ++ V + ++ D+I + AV+ +++ + Sbjct: 268 FERD--CSVQRRHQKVVE-----VAPAKDLPTDVRDRILSDAVKLAKSVNYRNAGTAEFL 320 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYT 340 + +N EIN + + +G+ Sbjct: 321 VDQQNRHYFIEINPRIQVEHT----ITEEITGIDIV 352 >ref|NP_229950.1| (NC_002505) acetyl-CoA carboxylase, biotin carboxylase [Vibrio cholerae] pir||F82341 acetyl-CoA carboxylase, biotin carboxylase VC0295 [imported] - Vibrio cholerae (group O1 strain N16961) gb|AAF93469.1| (AE004117) acetyl-CoA carboxylase, biotin carboxylase [Vibrio cholerae] Length = 447 Score = 216 bits (549), Expect = 4e-55 Identities = 49/342 (14%), Positives = 102/342 (29%), Gaps = 22/342 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 + + +R ++ L + + + + + D H+ L + + + Sbjct: 1 MLDKVVIANRGEIALRILRACKELGIKTVAVHSTADRDLKHVLLADESICIGPAKSIDSY 60 Query: 86 -QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + I P +G L E+ + + FVG DK Sbjct: 61 LNIPRIISAAEVTGAVAIHPG-YGFLSENADFAEQVERSGFIFVGPRAETIRLMGDKVSA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 ++ AG+ P + ++G P+ +K + G G+ V +E + Sbjct: 120 INAMKKAGVPCVPGSDGP-LDNDEAKNKAHAKRIGYPVIIKASGGGGGRGMRVVRNEAEL 178 Query: 205 AI------AVDLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A + V +E+ + R +E V+ + A E Sbjct: 179 TKSIQMTRAEAKAAFNNDMVYMEKFLENPRHVEVQVIADGQGNAIHLAERD--CSMQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E I E+ I +A +G G + E E+N Sbjct: 237 QKVVEE-----APAPGITEEMRKFIGERCTRACIEIGYRGAGTFEFLY-ENGEFYFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 T + P +G+ R+ ++ Sbjct: 291 TRIQVEH----PVTEMITGVDLIKEQLRIAAGQPLSFKQEDI 328 >ref|NP_470730.1| (NC_003212) acetyl-CoA carboxylase subunit (biotin carboxylase subunit) [Listeria innocua] emb|CAC96625.1| (AL596168) acetyl-CoA carboxylase subunit (biotin carboxylase subunit) [Listeria innocua] Length = 454 Score = 216 bits (549), Expect = 4e-55 Identities = 68/344 (19%), Positives = 122/344 (34%), Gaps = 25/344 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 I + +R ++ + I + V + Y + HI L A + K + Sbjct: 1 MIKKVLVANRGEIAVRIIRAAKELGVETVAIYSEADKEALHIQLADEAYCVGPAATKDSY 60 Query: 86 -QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + L D I P +G L E+ + N+ F+G A + KDV Sbjct: 61 LNMSNIISLAVLTNCDAIHPG-YGFLAENADFAELCEDCNITFIGPSASAISQMGTKDVA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + +R AG+ I P A+ ++ K+G P+ +K G G+ +EE+ Sbjct: 120 RETMRKAGVPIVPGSQGIVAD--VEDGKKIAKKIGYPVIIKATAGGGGKGIRVAENEEKL 177 Query: 205 AIAVD------LAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + A D V +E+ I R +E VL +++ GE Sbjct: 178 ISGIQTTQQEAEAAFGDPGVYLEKYIQDFRHVEIQVLADNHGNVIHLGERD--CSIQRRL 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEI 316 K I+E AI + K+ AV+A + + +G ++ EN E+ Sbjct: 236 QKLIEES-----PSPAIDEKTRQKMGKAAVKAAKAVNYSGAGTIEFIFDHHENNFYFMEM 290 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 NT + P +G+ + + + E A Sbjct: 291 NTRIQVEH----PVTELVTGIDLVK--QQFLVASGEELKIKQAD 328 >ref|NP_250702.1| (NC_002516) probable acyl-CoA carboxylase alpha chain [Pseudomonas aeruginosa] pir||A83395 probable acyl-CoA carboxylase alpha chain PA2012 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG05400.1|AE004627_8 (AE004627) probable acyl-CoA carboxylase alpha chain [Pseudomonas aeruginosa] Length = 655 Score = 215 bits (548), Expect = 4e-55 Identities = 63/332 (18%), Positives = 112/332 (32%), Gaps = 25/332 (7%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV-PGKH 83 ++I + +R ++ + + + + H+A A L P Sbjct: 6 RSIQRLLVANRGEIACRVMRSARALGIGSVAVHSDIDRHARHVAEADIAVDLGGAKPADS 65 Query: 84 EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + I P +G L E+ A L F+G A A K Sbjct: 66 YLRGDRIIAAALASGAQAIHPG-YGFLSENADFARACEEAGLLFLGPPAAAIDAMGSKSA 124 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 K L+ +AG+ + P + +F ++G P+ +K A G G+ V E + Sbjct: 125 AKALMEEAGVPLVPGYHG--EAQDLETFRREAGRIGYPVLLKAAAGGGGKGMKVVEREAE 182 Query: 204 YAIAVDL------AFEFDHKVIVEQG-IKGREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 A A+ A D +++VE+ +K R +E V + + E Sbjct: 183 LAEALSSAQREAKAAFGDARMLVEKYLLKPRHVEIQVFADRHGHCLYLNERD--CSIQRR 240 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEI 316 K ++E + E+ + AV+A Q +G G V+ L + E+ Sbjct: 241 HQKVVEE-----APAPGLGAELRRAMGEAAVRAAQAIGYVGAGTVEFLLDERGQFFFMEM 295 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 NT + P +GL L+ I Sbjct: 296 NTRLQVEH----PVTEAITGLD---LVAWQIR 320 >ref|NP_253100.1| (NC_002516) D-alanine--D-alanine ligase [Pseudomonas aeruginosa] pir||C83094 D-alanine--D-alanine ligase PA4410 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAF26456.1| (U19797) D-alanine:D-alanine ligase B [Pseudomonas aeruginosa] gb|AAG07798.1|AE004856_9 (AE004856) D-alanine--D-alanine ligase [Pseudomonas aeruginosa] Length = 319 Score = 215 bits (547), Expect = 7e-55 Identities = 104/348 (29%), Positives = 156/348 (43%), Gaps = 51/348 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 RV ++FGGKSAE EVSL+S ++ ++ + D + + + + + Sbjct: 20 RVAVLFGGKSAEREVSLKSGAMVLQSLLAAGVDAFGIDVGEDLLQRLVE----------- 68 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 +D F I+HG GEDGS+QG+L A Sbjct: 69 --------------------------------EKIDRAFIILHGRGGEDGSMQGLLECAG 96 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ GS VLASA MDK TKR+ GL + L + E +LG PL V Sbjct: 97 IPYTGSGVLASALAMDKLRTKRVWLSLGLPTPDYAVLASEDD----CREAAQRLGFPLIV 152 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KPA++GSS+G++KV ++ A A +D +V+VEQ I G E A L Q Sbjct: 153 KPAHEGSSIGMAKVGGLDELIAAWREAARYDSQVLVEQWISGPEFTVATLR---GQVLPA 209 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 + FY YD KY+ D VP + +++ + +A LG G R DV Sbjct: 210 IRLGTPHTFYDYDAKYLASDTRY-QVPCGLDEAKERELKELTARACDALGIQGWGRADVM 268 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 E + E+NT PG T+ S+ P +A+GL + L+ ++ + E Sbjct: 269 QDAEGRFWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADSRE 316 >ref|NP_437243.1| (NC_003078) putative methylcrotonoyl-CoA carboxylase biotinylated subunit protein [Sinorhizobium meliloti] emb|CAC49103.1| (AL603644) putative methylcrotonoyl-CoA carboxylase biotinylated subunit protein [Sinorhizobium meliloti] Length = 662 Score = 214 bits (546), Expect = 7e-55 Identities = 64/345 (18%), Positives = 113/345 (32%), Gaps = 28/345 (8%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 + +R ++ I + + + Y D H+AL A + P + Sbjct: 1 MFSKLLIANRGEIACRIIRTARRLGIRTVAVYSDADGDALHVALADEAIRIGGAPAAESY 60 Query: 86 QL-IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 I P +G L E+ + A + FVG A A KD Sbjct: 61 LASAPIVQAARSVGAQAIHPG-YGFLSENADFAEAVAEAGMIFVGPPPAAIRAMGLKDAA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K L+ +G+ + P + A+ ++G P+ +K G G+ +V +E + Sbjct: 120 KALMERSGVPVVPGYHG--EEQDASFLADRAREIGYPVLIKARAGGGGKGMRRVERQEDF 177 Query: 205 AIAVDLA------FEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A++ A D V++E+ + K R IE V G+ + E Sbjct: 178 GPALEAARREAESAFGDGSVLLERYLTKPRHIEMQVFGDRHGNIVHLFERD--CSLQRRH 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENE-----VV 312 K I+E + E+ + AV+A Q +G G V+ N Sbjct: 236 QKVIEE-----APAPGMTAEVRRAMGDAAVRAAQAIGYVGAGTVEFIADVTNGLWPDHFY 290 Query: 313 INEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 E+NT + P +G+ + R + Sbjct: 291 FMEMNTRLQVEH----PVTEAITGIDLVEWQLR-VASGEPLPKKQ 330 >ref|NP_214146.1| (NC_000918) biotin carboxylase [Aquifex aeolicus] pir||C70444 biotin carboxylase - Aquifex aeolicus gb|AAC07527.1| (AE000749) biotin carboxylase [Aquifex aeolicus] Length = 444 Score = 214 bits (546), Expect = 9e-55 Identities = 58/343 (16%), Positives = 119/343 (33%), Gaps = 25/343 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA-QVPGKHE 84 + +R ++ + I + + + Y + H+ L A + P K Sbjct: 1 MFKRVLIANRGEIAVRAIRACRELGLKTVAIYSEADKNSLHVELADEAICIGPPDPSKSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + D ++P +G L E+ ++ + F+G A DK + Sbjct: 61 LDIPRIMSALEVSKADAVYPG-YGFLSENPKFAEIVEKSGAKFIGPRSEVLAKIGDKVLA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K++ ++ GL + P ++ SK+G P+ +K A G G+ + E++ Sbjct: 120 KKVAKEVGLPLVPGSDEPLEF---SEAVKLASKIGYPVVIKAAAGGGGRGIRIIRDEKEL 176 Query: 205 AIAVDLA------FEFDHKVIVEQG-IKGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 LA D ++ +E+ I + IE V+ +++ GE Sbjct: 177 REKFPLAKKEAESAFGDGRLYIEKYVINPKHIEFQVIADEHGNVYVLGER--ECSIQRRH 234 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E +++ E +I + + LG V+ + E E+N Sbjct: 235 QKLIEE-----APSVSVSEEKRKEISEKVAEFCKRLGYTSAGTVEFLMDEEGNFYFMEMN 289 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + P +G+ L +LI E + Sbjct: 290 GRIQVEH----PVTEMVTGVDIVKL--QLIAAMGEEIKLEKVE 326 >ref|NP_390314.1| (NC_000964) acetyl-CoA carboxylase subunit (biotin carboxylase subunit) [Bacillus subtilis] pir||A69581 acetyl-CoA carboxylase (biotin carboxylase subunit) accC - Bacillus subtilis dbj|BAA12569.1| (D84432) YqhX [Bacillus subtilis] emb|CAB14365.1| (Z99116) acetyl-CoA carboxylase subunit (biotin carboxylase subunit) [Bacillus subtilis] Length = 450 Score = 214 bits (546), Expect = 9e-55 Identities = 61/344 (17%), Positives = 118/344 (33%), Gaps = 23/344 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 I + +R ++ + I + + + Y D H+ + A + K + Sbjct: 1 MIKKLLIANRGEIAVRIIRACRELGIETVAVYSEADKDALHVQMADEAFCIGPKASKDSY 60 Query: 86 -QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + L D I P +G L E+ + N+ FVG A + KDV Sbjct: 61 LNVTNIVSVAKLTGTDAIHPG-YGFLAENADFAELCEEVNVTFVGPSPDAISKMGTKDVA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + ++ AG+ I P N + +++G P+ +K G G+ +EE+ Sbjct: 120 RETMKQAGVPIVPGSQGIIEN--VEEAVSLANEIGYPVIIKATAGGGGKGIRVARTEEEL 177 Query: 205 AIAVD------LAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + + V +E+ I R +E VL ++ GE Sbjct: 178 INGIKITQQEAATAFRNPGVYIEKYIEDFRHVEIQVLADNYGNTIHLGERD--CSIQRRL 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEI 316 K ++E A+ EI +++ AV+A + +G G V+ E E+ Sbjct: 236 QKLLEES-----PSPALDSEIREQMGDAAVKAAKAVGYTGAGTVEFIYDYNEQRYYFMEM 290 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 NT + P +G ++ ++ Sbjct: 291 NTRIQVEH----PVTEMVTGTDLIKEQIKVASGMELSLKQEDVE 330 >ref|NP_457756.1| (NC_003198) biotin carboxylase [Salmonella enterica subsp. enterica serovar Typhi] ref|NP_462290.1| (NC_003197) acetyl CoA carboxylase, biotin carboxylase subunit [Salmonella typhimurium LT2] gb|AAL22249.1| (AE008856) acetyl CoA carboxylase, biotin carboxylase subunit [Salmonella typhimurium LT2] emb|CAD07895.1| (AL627278) biotin carboxylase [Salmonella enterica subsp. enterica serovar Typhi] Length = 449 Score = 213 bits (543), Expect = 2e-54 Identities = 54/333 (16%), Positives = 104/333 (31%), Gaps = 22/333 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 + + +R ++ L + + + + + D H+ L + P K Sbjct: 1 MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + I P +G L E+ + + + F+G DK Sbjct: 61 LNIPAIISAAEITGAVAIHPG-YGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 ++ AG+ P + + ++G P+ +K + G G+ V S+ + Sbjct: 120 ITAMKKAGVPTVPGSDGPLGDD-MNANRAHAKRIGYPVIIKASGGGGGRGMRVVRSDAEL 178 Query: 205 A------IAVDLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A A + V +E+ + R IE VL + A E Sbjct: 179 AQSISMTKAEAKAAFSNDMVYMEKYLENPRHIEIQVLADGQGNAIYLAERD--CSMQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E I PE+ I +A +G G + E E+N Sbjct: 237 QKVVEE-----APAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF-ENGEFYFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 T + P +G+ R+ Sbjct: 291 TRIQVEH----PVTEMITGVDLIKEQLRIAAGQ 319 >sp|P49787|ACCC_BACSU BIOTIN CARBOXYLASE (A SUBUNIT OF ACETYL-COA CARBOXYLASE (ACC) gb|AAB00183.1| (U36245) biotin carboxylase [Bacillus subtilis] Length = 448 Score = 213 bits (542), Expect = 2e-54 Identities = 61/344 (17%), Positives = 117/344 (33%), Gaps = 23/344 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 I + +R ++ + I + + + Y D H+ + A + K + Sbjct: 1 MIKKLLIANRGEIAVRIIRACRELGIETVAVYSEADKDALHVQMADEAFCIGPKASKDSY 60 Query: 86 -QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + L D I P +G L E+ + N+ FVG A + KDV Sbjct: 61 LNVTNIVSVAKLTGTDAIHPG-YGFLAENADFAELCEEVNVTFVGPSADAISKMGTKDVA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + ++ AG+ I P N + +++G P+ +K G G+ +EE+ Sbjct: 120 RETMKQAGVPIVPGSQGIIEN--VEEAVSLANEIGYPVIIKATAGGGGKGIRVARTEEEL 177 Query: 205 AIAVD------LAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + + V +E+ I R +E VL ++ GE Sbjct: 178 INGIKITQQEAATAFGNPGVYIEKYIEDFRHVEIQVLADNYGNTIHLGERD--CSIQRRL 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEI 316 K + E A+ EI +++ AV+A + +G G V+ E E+ Sbjct: 236 QKLLGES-----PSPALGSEIREQMGDAAVKAAKAVGYTGAGTVEFIYDYNEQRYYFMEM 290 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 NT + P +G ++ ++ Sbjct: 291 NTRIQVEH----PVTEMVTGTDLIKEQIKVASGMELSLKQEDVE 330 >gb|AAG10491.1|AF279106_53 (AF279106) predicted acetyl-CoA carboxylase, biotin carboxylase [uncultured proteobacterium EBAC31A08] Length = 447 Score = 213 bits (542), Expect = 2e-54 Identities = 59/343 (17%), Positives = 111/343 (32%), Gaps = 22/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV-PGKHE 84 + +R ++ L I + + S Y D H+ + P + Sbjct: 1 MSYKVLIANRGEIALRAIRACKELGIKTVSVYSEADKDLKHLRFSDETVCIGPASPTQSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + L + + I+P +G L ED + M + F+G DK Sbjct: 61 LNIPAILSAAELTSANAIYPG-YGFLAEDHNFAEMCEKSGFKFIGPTSETIQKMGDKITA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K L +G+ I P + N F ++ +G P+ +K G G+ V EE Sbjct: 120 KTLAEKSGIQIVPGYKDEIPSD-NDEFKKIARDIGYPIMIKATAGGGGRGMRVVEREEDL 178 Query: 205 AIAVDLAFE------FDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 ++ + + + +E+ I R IE ++G+ +A G Sbjct: 179 IGHAEITMQEAKNGFGNETIYLEKFIGNPRHIEVQIVGDGKGKAIHLGTRD--CSMQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E I E +K V + + G+ ++ +N+ E+N Sbjct: 237 QKIIEE-----APALNINQEALNKTLIACVNLCEEINYEGVGTIEFLY-EDNQFYFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P +G R+ D+ Sbjct: 291 TRIQVEH----PVTEMITGFDLVKAQLRIALEMPIELNQDDIN 329 >ref|NP_417722.1| (NC_000913) acetyl CoA carboxylase, biotin carboxylase subunit [Escherichia coli K12] sp|P24182|ACCC_ECOLI BIOTIN CARBOXYLASE (A SUBUNIT OF ACETYL-COA CARBOXYLASE (ACC) pir||JS0632 acetyl-CoA carboxylase (EC 6.4.1.2) biotin carboxylase chain [validated] - Escherichia coli pdb|1DV1|A Chain A, Structure Of Biotin Carboxylase (Apo) pdb|1DV1|B Chain B, Structure Of Biotin Carboxylase (Apo) pdb|1BNC|A Chain A, Mol_id: 1; Molecule: Biotin Carboxylase; Chain: A, B; Ec: 6.3.4.14 pdb|1BNC|B Chain B, Mol_id: 1; Molecule: Biotin Carboxylase; Chain: A, B; Ec: 6.3.4.14 gb|AAA23409.1| (M80458) biotin carboxylase [Escherichia coli] gb|AAA23746.1| (M83198) biotin carboxylase [Escherichia coli] gb|AAA58059.1| (U18997) biotin carboxylase [Escherichia coli] gb|AAC76288.1| (AE000404) acetyl CoA carboxylase, biotin carboxylase subunit [Escherichia coli K12] Length = 449 Score = 212 bits (541), Expect = 3e-54 Identities = 52/343 (15%), Positives = 106/343 (30%), Gaps = 22/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 + + +R ++ L + + + + + D H+ L + P K Sbjct: 1 MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + I P +G L E+ + + + F+G DK Sbjct: 61 LNIPAIISAAEITGAVAIHPG-YGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 ++ AG+ P + + + + ++G P+ +K + G G+ V + + Sbjct: 120 IAAMKKAGVPCVPGSDGPLGDDMDKN-RAIAKRIGYPVIIKASGGGGGRGMRVVRGDAEL 178 Query: 205 AI------AVDLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A A + V +E+ + R +E VL + A E Sbjct: 179 AQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERD--CSMQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E I PE+ I +A +G G + E E+N Sbjct: 237 QKVVEE-----APAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF-ENGEFYFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P +G+ R+ + Sbjct: 291 TRIQVEH----PVTEMITGVDLIKEQLRIAAGQPLSIKQEEVH 329 >ref|NP_312155.1| (NC_002695) acetyl CoA carboxylase biotin carboxylase subunit [Escherichia coli O157:H7] dbj|BAB37551.1| (AP002564) acetyl CoA carboxylase biotin carboxylase subunit [Escherichia coli O157:H7] Length = 449 Score = 212 bits (541), Expect = 3e-54 Identities = 51/343 (14%), Positives = 106/343 (30%), Gaps = 22/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 + + +R ++ L + + + + + D H+ L + P K Sbjct: 1 MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + I P +G L E+ + + + F+G DK Sbjct: 61 LNIPAIISAAEITGAVAIHPG-YGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 ++ AG+ P + + + + ++G P+ +K + G G+ V + + Sbjct: 120 IAAMKKAGVPCVPGSDGPLGDDMDKN-RAIAKRIGYPVIIKASGGGGGRGMRVVRGDAEL 178 Query: 205 AI------AVDLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A A + V +E+ + R +E VL + + E Sbjct: 179 AQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNSIYLAERD--CSMQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E I PE+ I +A +G G + E E+N Sbjct: 237 QKVVEE-----APAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF-ENGEFYFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P +G+ R+ + Sbjct: 291 TRIQVEH----PVTEMITGVDLIKEQLRIAAGQPLSIKQEEVH 329 >ref|NP_289824.1| (NC_002655) acetyl CoA carboxylase, biotin carboxylase subunit [Escherichia coli O157:H7 EDL933] gb|AAG58384.1|AE005553_6 (AE005553) acetyl CoA carboxylase, biotin carboxylase subunit [Escherichia coli O157:H7 EDL933] Length = 449 Score = 212 bits (540), Expect = 4e-54 Identities = 51/343 (14%), Positives = 105/343 (29%), Gaps = 22/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 + + +R ++ L + + + + + D H+ L + P K Sbjct: 1 MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + I P +G L E+ + + + F+G DK Sbjct: 61 LNIPAIISAAEITGAVAIHPG-YGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 ++ AG+ P + + + + ++G P+ +K + G G+ V + + Sbjct: 120 IAAMKKAGVPCVPGSDGPLGDDMDKN-RAIAKRIGYPVIIKASGGGGGRGMRVVRGDAEL 178 Query: 205 AI------AVDLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A A + V +E+ + R +E VL + E Sbjct: 179 AQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNXIYLAERD--CSMQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E I PE+ I +A +G G + E E+N Sbjct: 237 QKVVEE-----APAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF-ENGEFYFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P +G+ R+ + Sbjct: 291 TRIQVEH----PVTEMITGVDLIKEQLRIAAGQPLSIKQEEVH 329 >ref|NP_372130.1| (NC_002758) acetyl-CoA carboxylase [Staphylococcus aureus subsp. aureus Mu50] ref|NP_374719.1| (NC_002745) acetyl-CoA carboxylase (biotin carboxylase subunit), accC homolog [Staphylococcus aureus subsp. aureus N315] dbj|BAB42698.1| (AP003134) ORFID:SA1434~acetyl-CoA carboxylase (biotin carboxylase subunit), accC homolog [Staphylococcus aureus subsp. aureus N315] dbj|BAB57768.1| (AP003362) acetyl-CoA carboxylase [Staphylococcus aureus subsp. aureus Mu50] Length = 453 Score = 212 bits (540), Expect = 5e-54 Identities = 53/342 (15%), Positives = 109/342 (31%), Gaps = 23/342 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHEH 85 ++ + +R ++ + I ++ + + Y + H+ L A + + Sbjct: 1 MLRCLIANRGEIAVRIIRACREYGIETVAVYAKGDEQSLHVHLADQAICIGEANALDSYL 60 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + + + + I P +G L E + + F+G DK + Sbjct: 61 NIDRIISAAQITGANAIHPG-YGFLSESTKFAQTVEEQGIAFIGPTKKTMEMMGDKITAR 119 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 + + AG+ + P H + +G P+ +K A+ G G+ V E Sbjct: 120 QTVHHAGVPVIPGSNGAV--NHVSEIENLAKDIGYPVVIKAASGGGGKGIRIVKKAEDLE 177 Query: 206 IAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A A D +V VE I + +E V+G+ GE + Sbjct: 178 KAFKEAKSEGKKYFDDDRVYVEAFIPVAKHVEVQVMGDGQDNYVHLGERD--CSVQRKNQ 235 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K I+E AA+ E +I AV+ + ++ +T + E+N Sbjct: 236 KLIEES-----PCAALTEERRQQICNDAVKVARAANYRSAGTIEFLVT-DTAHYFIEMNA 289 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + + + L+E + + Sbjct: 290 RIQVEHTVTEMRAER----DLVAAQLYLLEHNHLPFSQSDIQ 327 >ref|NP_420691.1| (NC_002696) acetyl-CoA carboxylase, biotin carboxylase [Caulobacter crescentus] gb|AAK23859.1| (AE005862) acetyl-CoA carboxylase, biotin carboxylase [Caulobacter crescentus] Length = 448 Score = 212 bits (539), Expect = 5e-54 Identities = 59/343 (17%), Positives = 115/343 (33%), Gaps = 23/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKHE 84 + +R ++ L + ++ + + + + L + + P K Sbjct: 1 MFDKILIANRGEIALRVHRACKEMGIATVAVHSEADRNSMWVRLADESVCIGPAPAAKSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + I P +G L E+ ++ F+G DK Sbjct: 61 LNIPSIIAAAEITGAQAIHPG-YGFLSENARFAEIVGAHGFTFIGPKPEHIRMMGDKITA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K+ ++DAG+ + P + E K+G P+ +K A G G+ + E Sbjct: 120 KQAVKDAGIPVVPGSDGGVS--TEEEAFEAAEKIGFPVLIKAAAGGGGRGMKVAQTREDL 177 Query: 205 AIAV------DLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A AV A D V +E+ ++ R IE V+ + + GE Sbjct: 178 AEAVSTARAEARAAFGDDTVYMERYLQKPRHIELQVIADSHGNVVHLGERD--CSLQRRH 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E A++ E KI + V A + +G G+ ++ +E E+N Sbjct: 236 QKVLEE-----APSPALSAEGRAKIGKVVVDAVKAIGYLGVGTIEFLW-ENDEFFFIEMN 289 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P +G+ R+ D+ + Sbjct: 290 TRLQVEH----PVTEAITGIDLVREQIRIAAGLPLSFTQDDVV 328 >prf||2009329A urea amidolyase [Pichia jadinii] Length = 1830 Score = 212 bits (539), Expect = 6e-54 Identities = 53/355 (14%), Positives = 107/355 (29%), Gaps = 32/355 (9%) Query: 23 SAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSL-AQVPG 81 S+K + +R ++ + + + + + Y H+ A L Sbjct: 616 SSKPFKSVLVANRGEIAVRIMRTLKKLGIQSIAIYSEPDQYSQHVLDADVAIPLNGTSAA 675 Query: 82 KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDK 141 + + + I P +G L E+ + + FVG + K Sbjct: 676 ETYINIEKVIKAAKDSKAEAIIPG-YGFLSENAEFADICEKEGIVFVGPTGDSIRKLGLK 734 Query: 142 DVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL--------PLFVKPANQGSSV 193 + + + A + + P L SKLGL + +K G + Sbjct: 735 HSAREIAQKANVPLVPGSGLIS---DIDEAIAFASKLGLSNDPETSVKVMLKSTAGGGGI 791 Query: 194 GVSKVTSEEQYAIAVD------LAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGE 246 G+ KV + A + A+ D V +E+ + R +E + G+ A GE Sbjct: 792 GLQKVDLLDDLPKAFETVKHQGQAYFGDAGVFLERFVEDARHVEVQMFGDGFGNAIAVGE 851 Query: 247 IVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT 306 + K I+E + +R A Q ++ V+ Sbjct: 852 RD--CSLQRRNQKIIEE-----TPAPNLPESTRQAMRKAAEQLGGSMNYKCAGTVEFIYE 904 Query: 307 PE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + +E E+N + P +GL + + ++ + Sbjct: 905 EKRDEFFFLEVNARLQVEH----PITESVTGLDLVEWMLKIAANQAPDFKSQTIE 955 >gb|AAA23748.1| (M79446) biotin carboxylase [Escherichia coli] Length = 449 Score = 212 bits (539), Expect = 6e-54 Identities = 52/343 (15%), Positives = 106/343 (30%), Gaps = 22/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 + + +R ++ L + + + + + D H+ L + P K Sbjct: 1 MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + I P +G L E+ + + + F+G DK Sbjct: 61 LNIPAIISAAEITGAVAIHPG-YGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 ++ AG+ P + + + + ++G P+ +K + G G+ V + + Sbjct: 120 IAAMKKAGVPCVPGSDGPLGDDMDKN-RAIAKRIGYPVIIKASGGGGGRGMRVVRGDAEL 178 Query: 205 AI------AVDLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A A + V +E+ + R +E VL + A E Sbjct: 179 AQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERD--CSMQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E I PE+ I +A +G G + E E+N Sbjct: 237 QKVVEE-----APAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF-ENGEFYFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P +G+ R+ + Sbjct: 291 TRIQVEH----PVTEMITGVDLIKEQMRIAAGQPLSIKQEEVH 329 >ref|NP_232019.1| (NC_002505) carbamoyl-phosphate synthase, large subunit [Vibrio cholerae] pir||D82083 carbamoyl-phosphate synthase, large chain VC2389 [imported] - Vibrio cholerae (group O1 strain N16961) gb|AAF95532.1| (AE004309) carbamoyl-phosphate synthase, large subunit [Vibrio cholerae] Length = 1076 Score = 212 bits (539), Expect = 6e-54 Identities = 57/355 (16%), Positives = 125/355 (35%), Gaps = 52/355 (14%) Query: 2 EKLRVGIVFGGKSA-----EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 +K ++ ++ GG + E + A A+ + ++ +++ + + D S Sbjct: 557 DKDKIMVLGGGPNRIGQGIEFDYCCVHA---ALALREDGYETIMVNCNPETVSTDYDTS- 612 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + LA V + +I GQ + Sbjct: 613 ------DRLYFEPVTLEDVLAIVRVEKPKGVIVQYGGQTPLKL----------------- 649 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L A +P +G+ A D++ ++ ++ GL T+T E Sbjct: 650 ARALEAAGVPVIGTSPDAIDRAEDRERFQQAVQRLGLKQPDNATVT----AIEQAIEKSR 705 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGI-KGREIECAV 233 ++G PL V+P+ + V E+ + A + V++++ + E++ Sbjct: 706 EIGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDDATEVDVDA 765 Query: 234 LGND-NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + + E + + ++ D A + ++ EI DK+R + Sbjct: 766 ICDGERVVIGGIMEHIEQAGVHS-------GDSACSLPAYTLSQEIQDKMREQVEKLAFE 818 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 LG G+ + + +NEV + E+N T P + +A+G + R++ Sbjct: 819 LGVRGLMNIQFAV-KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAARVM 868 Score = 151 bits (382), Expect = 9e-36 Identities = 45/357 (12%), Positives = 106/357 (29%), Gaps = 56/357 (15%) Query: 6 VGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 + I+ G++ E + S A+ + + V+L+ + Sbjct: 10 ILILGAGPIVIGQACEFDYS---GAQACKALREEGYRVILVNSNPATIMTD--------- 57 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ--- 117 + + + D I P + G + +L Sbjct: 58 ------PEMADATY-------IEPIHWEVVRKIIEKERPDAILPTMGGQTALNCALALEK 104 Query: 118 -GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 G+L + +G+ A D+ + ++ GL T V Sbjct: 105 HGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADTAKSMEEAYKVLDMV-- 162 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKG-REIECAV 233 G P ++P+ G + E++ + ++++++ + G +E E V Sbjct: 163 --GFPCIIRPSFTMGGSGGGIAYNREEFEEICTRGLDLSPTNELLIDESLIGWKEYEMEV 220 Query: 234 LGNDNPQASTC--GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 + + N E + D V + + +R ++ + Sbjct: 221 VRDKNDNCIIVCAIENFDPMGIHT-------GDSITVAPAQTLTDKEYQIMRNASLAVLR 273 Query: 292 TLGC-AGMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 +G G + V + + +VI E+N ++ +A+G + +L Sbjct: 274 EIGVETGGSNVQFGINPKDGRMVIIEMNPRVSRSSA----LASKATGFPIAKVAAKL 326 >pir||S71009 biotin carboxylase protein A2 - Saccharopolyspora erythraea emb|CAA63311.1| (X92557) biotin carboxylase and biotin carboxyl carrier protein [Saccharopolyspora erythraea] Length = 591 Score = 211 bits (536), Expect = 1e-53 Identities = 57/331 (17%), Positives = 104/331 (31%), Gaps = 22/331 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV-PGKHE 84 I + +R ++ + I V + Y D + L A L + Sbjct: 9 AIKKVLVANRGEIAVRVIRACRDVGVGSVAVYAEPDVDAVFVRLADEAFGLGGSTAAESY 68 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + D + P +G L E+ + A L +VG A DK Sbjct: 69 LDIGKVIDAAQRSGADAVHPG-YGFLSENADFAQAVLDAGLVWVGPSPEAIRVLGDKVTA 127 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 +R+ + G + P + GLP+ +K A G G+ S E+ Sbjct: 128 RRIALEVGAPLVPGT--EEPASGADEVVAFAEEHGLPVAIKAAFGGGGRGLKVARSLEEI 185 Query: 205 AIAVD------LAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + A + VE+ + R +E VL + + G Sbjct: 186 PGLFESAVREAEAAFGRGECFVERYLDRPRHVEAQVLADRHGGVVVVGTRD--CSLQRRH 243 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E ++ E ++I A + G AG V+ + + + E+N Sbjct: 244 QKLVEE-----APAPFLSEEQRERIHTAAREICARAGYAGAGTVEFLVGADGTISFLEVN 298 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 T + P + +GL R+ Sbjct: 299 TRLQVEH----PVSEETTGLDLVVEQLRIAA 325 >ref|NP_047031.1| (NC_001905) PCACA; L549.5 [Leishmania major] pir||T02793 propionyl CoA carboxylase (alpha chain) PCACA [imported] - Leishmania major (strain Friedlin) gb|AAC24617.1| (AE001274) PCACA; L549.5 [Leishmania major] Length = 665 Score = 211 bits (536), Expect = 1e-53 Identities = 54/325 (16%), Positives = 109/325 (32%), Gaps = 22/325 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQ-L 87 + +R ++ + + + + Y + H+ + + + + Sbjct: 8 KVLVANRGEIACRVMATCQRLGIKTVAVYSTADEQAKHVKVADEGVCIGPPASVESYLCI 67 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + + P +G L E+G Q L N+ FVG D + A DK +KRL Sbjct: 68 DKIVDACKKTGAQAVHPG-YGFLSENGEFQAALHKNNIIFVGPDAHSIEAMGDKIESKRL 126 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 AG+ P + + ++G P+ +K + G G+ ++ Q Sbjct: 127 AHSAGVTCIPGFIGEVK--THEDVLKFAREVGYPVMIKASGGGGGKGMRVAYNDSQCVEY 184 Query: 208 VD------LAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 D A K++VE+ I R IE V+ + E + K Sbjct: 185 YDMCREEAKAAFNSDKMLVEKFIENPRHIEIQVIADRRGNTLYLPER--ECSIQRRNQKV 242 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 I+E + + + AV + + V+ + P+ + E+NT Sbjct: 243 IEE-----APSVLLDAKTRKAMGEEAVAMARAVQYVSAGTVENVVNPQKQFYFLEMNTRL 297 Query: 321 GFTNISMYPKLWQASGLGYTDLITR 345 + P + +G+ + + R Sbjct: 298 QVEH----PITEEITGIDLVEQMLR 318 >gb|AAD25800.1|AC006550_8 (AC006550) Identical to gb|U12536 3-methylcrotonyl-CoA carboxylase precursor protein from Arabidopsis thaliana. ESTs gb|H35836, gb|AA651295 and gb|AA721862 come from this gene Length = 730 Score = 211 bits (536), Expect = 1e-53 Identities = 52/328 (15%), Positives = 107/328 (31%), Gaps = 27/328 (8%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HEH 85 I + +R ++ + + + + Y D H+ A + + Sbjct: 38 IEKILVANRGEIACRIMRTAKRLGIQTVAVYSDADRDSLHVKSADEAVRIGPPSARLSYL 97 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + I P +G L E + + L F+G A DK +K Sbjct: 98 SGVTIMEAAARTGAQAIHPG-YGFLSESSDFAQLCEDSGLTFIGPPASAIRDMGDKSASK 156 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 R++ AG+ + P + K+G P+ +KP + G G+ V S + +A Sbjct: 157 RIMGAAGVPLVPGYHGH--EQDIDHMKSEAEKIGYPIIIKPTHGGGGKGMRIVQSGKDFA 214 Query: 206 IAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 + A + +++E+ I + R IE V+ + E ++ D + Sbjct: 215 DSFLGAQREAAASFGVNTILLEKYITRPRHIEVQVVSREISCCFFFHERLIFGDKHGNVL 274 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEIN 317 + D + + + + I +A +G V+ + ++ E+N Sbjct: 275 HLYERDCS-----------VQRRHQKIIEEAPAAVGYYNAGTVEFIVDTESDQFYFMEMN 323 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITR 345 T + P G + R Sbjct: 324 TRLQVEH----PVTEMIVGQDLVEWQIR 347 >pdb|1DV2|A Chain A, The Structure Of Biotin Carboxylase, Mutant E288k, Complexed With Atp pdb|1DV2|B Chain B, The Structure Of Biotin Carboxylase, Mutant E288k, Complexed With Atp Length = 452 Score = 210 bits (535), Expect = 2e-53 Identities = 51/343 (14%), Positives = 106/343 (30%), Gaps = 22/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 + + +R ++ L + + + + + D H+ L + P K Sbjct: 4 MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSY 63 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + I P +G L E+ + + + F+G DK Sbjct: 64 LNIPAIISAAEITGAVAIHPG-YGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSA 122 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 ++ AG+ P + + + + ++G P+ +K + G G+ V + + Sbjct: 123 IAAMKKAGVPCVPGSDGPLGDDMDKN-RAIAKRIGYPVIIKASGGGGGRGMRVVRGDAEL 181 Query: 205 AI------AVDLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A A + V +E+ + R +E VL + A E Sbjct: 182 AQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERD--CSMQRRH 239 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E I PE+ I +A +G G + E ++N Sbjct: 240 QKVVEE-----APAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF-ENGEFYFIKMN 293 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P +G+ R+ + Sbjct: 294 TRIQVEH----PVTEMITGVDLIKEQLRIAAGQPLSIKQEEVH 332 >gb|AAK97387.1|AF363615_1 (AF363615) D-alanine:D-alanine ligase 2 [Enterococcus gallinarum] Length = 343 Score = 210 bits (535), Expect = 2e-53 Identities = 91/354 (25%), Positives = 166/354 (46%), Gaps = 16/354 (4%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 + + ++ GG S E +VSL S I A+++ +LL + + +++ + ++ Sbjct: 1 MNIVVLAGGLSHERDVSLSSGGQIAMALEERGHRALLLDLYQGNNEKTFESAYSIQKQEE 60 Query: 64 PAHIALRPSATSLAQV---PGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + + ++ LI + D F +HG +GE+G LQ Sbjct: 61 NPYDYFVVENEPDIEKLIQKNSNQKNLIGKNVVELCLNADFCFIALHGGIGENGKLQAFF 120 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + + + GS S MDKD+ K+L++ + + + S Sbjct: 121 DIYGIRYSGSHYKGSLLAMDKDIAKQLMKLNDIPTPKWQLWEQGQEVYYS---------T 171 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P VKP + GSS+GV V ++EQ+ A+ A +++ KV++EQ I+GRE VLG+ Sbjct: 172 PCVVKPIDNGSSIGVEIVENKEQFFKALKKAEKYNSKVMIEQKIEGREFSVGVLGD---N 228 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 EI+ FY Y+ KY ++ PA I+ ++ ++ + V + LG + +R Sbjct: 229 VLPAIEIIPQQGFYNYENKYQKGATEEI-TPADISSDLATRLSEMTVLVNKVLGLSIYSR 287 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 VD +T E ++ E N+LPG T S+ P+ +A G+ +++L ++EL+LE Sbjct: 288 VDYIVTKELDIYCIEANSLPGMTPTSLLPQEAEAIGISFSELCETIVELSLESW 341 >ref|NP_220985.1| (NC_000963) PROPIONYL-COA CARBOXYLASE ALPHA CHAIN PRECURSOR (pccA) [Rickettsia prowazekii] pir||C71667 propionyl-COA carboxylase alpha chain precursor (pccA) RP618 - Rickettsia prowazekii emb|CAA15061.1| (AJ235272) PROPIONYL-COA CARBOXYLASE ALPHA CHAIN PRECURSOR (pccA) [Rickettsia prowazekii] Length = 665 Score = 210 bits (534), Expect = 2e-53 Identities = 50/339 (14%), Positives = 115/339 (33%), Gaps = 22/339 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHEHQL 87 + +R ++ + I + + + Y + ++ A + P + Sbjct: 8 KILIANRSEIAVRIIRTLKKMGIGSVAVYSEADTNSMYVQHADEAYYIGDSPATASYLSV 67 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + + + P +G L E+ + +L+ + +G DK K++ Sbjct: 68 KNLISAIRESGASAVHPG-YGFLSENPNFANILKREGVVLIGPSAGTIKKMGDKIEAKKI 126 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 +AG++ P T + ++ ++G P+ VK G G+ V + + A A Sbjct: 127 AIEAGVSTVPGYMGTIKD--VKQAIDIAKEIGFPVIVKATAGGGGRGMRVVNNPAEMANA 184 Query: 208 VDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 + A D ++ +E+ I+ R IE ++ + + GE + K Sbjct: 185 FESAKLEAANSFSDDRLFIEKLIQTPRHIEIQLIADQYGNSVCLGER--ECSIQRHHQKV 242 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 I+E + I I ++ + Q +G V+ + E+NT Sbjct: 243 IEE-----APSSFITENIRHEMYRQVISLSQKVGYYSAGTVEFIVDSNKNFYFLEMNTRL 297 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 + P +G+ + + ++ D+ Sbjct: 298 QVEH----PVTELITGIDIVEEMIKIAAGEKLSFTQDDI 332 >ref|NP_360596.1| (NC_003103) propionyl-CoA carboxylase alpha chain precursor [EC:6.4.1.3] [Rickettsia conorii] gb|AAL03497.1| (AE008649) propionyl-CoA carboxylase alpha chain precursor [EC:6.4.1.3] [Rickettsia conorii] Length = 665 Score = 210 bits (534), Expect = 2e-53 Identities = 51/339 (15%), Positives = 117/339 (34%), Gaps = 22/339 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHEHQL 87 + +R ++ + I + + + Y + ++ A + P + + Sbjct: 8 KILIANRSEIAVRIIRTLKKMGIKSVAVYSEADTNSMYVQHADEAYYIGDSPATESYLSI 67 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + + + P +G L E+ + +L+ + +G DK K++ Sbjct: 68 KNIISAIRESGASAVHPG-YGFLSENPNFANILKREGVVLIGPSAGTIKKMGDKIEAKKI 126 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 +AG++ P T ++ ++G P+ VK A G G+ V + + A A Sbjct: 127 AIEAGVSTVPGYMGTI--NDVKQAIDIAKEIGFPVIVKAAAGGGGRGMRVVNNPAEMANA 184 Query: 208 VDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 + A D ++ +E+ I+ R IE ++ + + GE + K Sbjct: 185 FESAKLEAANSFSDDRLFIEKLIQTPRHIEIQLIADQYGNSVCLGER--ECSIQRHHQKV 242 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 I+E + I +I ++ + Q +G V+ + E+NT Sbjct: 243 IEE-----APSSFITEDIRQEMYRQVISLSQKVGYYSAGTVEFIVDSNKNFYFLEMNTRL 297 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 + P +G+ + + ++ D+ Sbjct: 298 QVEH----PVTELITGIDIVEEMIQIAAGEKLSFTQDDV 332 >ref|NP_439298.1| (NC_000907) D-alanine--D-alanine ligase (ddlB) [Haemophilus influenzae Rd] sp|P44405|DDL_HAEIN D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||F64185 D-alanine--D-alanine ligase (EC 6.3.2.4) B - Haemophilus influenzae (strain Rd KW20) gb|AAC22795.1| (U32794) D-alanine--D-alanine ligase (ddlB) [Haemophilus influenzae Rd] Length = 306 Score = 209 bits (533), Expect = 3e-53 Identities = 108/351 (30%), Positives = 175/351 (49%), Gaps = 47/351 (13%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 +++ ++ ++ GG SAE EVSL S K +++A+ K ++ + Sbjct: 3 LKQEKIAVLLGGTSAEREVSLNSGKAVLEALLKQGYNAHPIDP----------------- 45 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 E+ + + + F I+HG GEDG++QG+L Sbjct: 46 ----------------------KEYNVANL----KKDGFNRAFNILHGRGGEDGTMQGLL 79 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 LP+ G V+ASA MDK TK L + GL +A +TR + V +KLGL Sbjct: 80 EQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFSELDPQAVVAKLGL 139 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 PL VKP+ +GSSVG++KV + E+ AV+ A +FD+ +++E+ + G E+ VL N Q Sbjct: 140 PLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKFDNTILIEEWLAGDELTVPVLDN---Q 196 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 IV +FY Y+ KYI D + PA + PE + + +AY +GC G +R Sbjct: 197 VLPAIRIVPEGEFYDYEAKYI-SDNTQYFCPAGLTPEREQALSTLVKRAYDAVGCRGWSR 255 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 +DV + + E+NT PG T+ S++PK G+ + L+ +++EL+L Sbjct: 256 IDVMCDAKGNFRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILELSL 306 >ref|NP_282436.1| (NC_002163) biotin carboxylase [Campylobacter jejuni] pir||G81271 biotin carboxylase (EC 6.3.4.14) Cj1290c [imported] - Campylobacter jejuni (strain NCTC 11168) emb|CAB73717.1| (AL139078) biotin carboxylase [Campylobacter jejuni] Length = 443 Score = 209 bits (532), Expect = 3e-53 Identities = 57/331 (17%), Positives = 117/331 (35%), Gaps = 23/331 (6%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHE 84 I + +R ++ L + + Y D ++ ++ + + Sbjct: 1 MEIKSILIANRGEIALRALRTIKEMGKKAICVYSEADKDALYLKYADASICIGKARSSES 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + I A +G L E+ + + N+ F+G V A DK Sbjct: 61 YLNIPAIIAAAEIAEADAIFPGYGFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKA 120 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K++++ AG+ + P A + ++ ++G P+ +K A G G+ V +E+ Sbjct: 121 KQVMQRAGVPVIPGSDGALA--GAEAAKKLAKEIGYPVILKAAAGGGGRGMRVVENEKDL 178 Query: 205 AIAVDLA------FEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A D + +E+ I R IE V+G+ GE Sbjct: 179 EKAYWSAESEAMTAFGDGTMYMEKYIQNPRHIEVQVIGDSFGNVIHVGERD--CSMQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E A + + + ++ A++A + +G G + + + E+N Sbjct: 237 QKLIEESPAIL-----LDEKTRTRLHETAIKAAKAIGYEGAGTFEFLVDKNLDFYFIEMN 291 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 T + SG+ +I ++I+ Sbjct: 292 TRLQVEHCV----SEMVSGID---IIEQMIK 315 >ref|NP_252890.1| (NC_002516) D-alanine-D-alanine ligase A [Pseudomonas aeruginosa] pir||E83121 D-alanine-D-alanine ligase A PA4201 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG07588.1|AE004836_7 (AE004836) D-alanine-D-alanine ligase A [Pseudomonas aeruginosa] Length = 346 Score = 209 bits (532), Expect = 4e-53 Identities = 114/355 (32%), Positives = 181/355 (50%), Gaps = 20/355 (5%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +KL+V ++FGG S E +VS+ S ++ A+ + V+ + G + L Sbjct: 4 DKLKVAVLFGGSSEERDVSIASGAQVIQALRSAGHQVLAVD-TASGLLGAEEERRLL--- 59 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 + P + SLA + + + L VDV F +HG GEDG+LQ +L Sbjct: 60 -ASKVKEVPPDSDSLAIIRSGKQS----LLSAGELAGVDVFFLALHGGTGEDGTLQALLD 114 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 + GS LASA MDKDV KRL AG+ A ++ + EV +LG P Sbjct: 115 AGGFAYTGSGHLASAMAMDKDVAKRLFLAAGVETASWLMAPASEE------EVREQLGFP 168 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 L VKP +QGS+VG+S V S+ + A++LA + +V++E+ + GRE+ VL + QA Sbjct: 169 LVVKPNSQGSTVGLSIVHSQAELQPAIELAGRYGDEVMLERFVAGREVTVGVLDD---QA 225 Query: 242 STCGEIVLTSD-FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 GEI+L + Y+ KY +V PA + P I + + +A++ ++ L +G +R Sbjct: 226 LPVGEILLGGQEVFDYEHKYQAGAVREVF-PADLPPAIAAEAQRLALKVHRALKLSGYSR 284 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 D L + + E+NTLPG T S+ P+ A+G+G+ +L R+ L +ER Sbjct: 285 TDFRLDEQGRLWCLEVNTLPGMTATSLLPQAAAAAGIGFAELCERICRLGIERCK 339 >pir||S71006 biotin carboxylase protein A1 - Saccharopolyspora erythraea emb|CAA63308.1| (X92556) biotin carboxylase and biotin carboxyl carrier protein [Saccharopolyspora erythraea] Length = 597 Score = 209 bits (532), Expect = 4e-53 Identities = 56/328 (17%), Positives = 103/328 (31%), Gaps = 22/328 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV-PGKHEHQL 87 + +R ++ + I V + Y D + L A L + + Sbjct: 18 KVLVANRGEIAVRVIRACRDVGVGSVAVYAEPDVDAVFVRLADEAFGLGGSTAAESYLDI 77 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + D + P +G L E+ + A L +VG A DK +R+ Sbjct: 78 GKVIDAAQRSGADAVHPG-YGFLSENADFAQAVLDAGLVWVGPSPEAIRVLGDKVTARRI 136 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + G + P + GLP+ +K A G G+ S E+ Sbjct: 137 ALEVGAPLVPGT--EEPASGADEVVAFAEEHGLPVAIKAAFGGGGRGLKVARSLEEIPGL 194 Query: 208 VD------LAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 + A + VE+ + R +E VL + + G K Sbjct: 195 FESAVREAEAAFGRGECFVERYLDRPRHVEAQVLADRHGGVVVVGTRD--CSLQRRHQKL 252 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E ++ E ++I A + G AG V+ + + + E+NT Sbjct: 253 VEE-----APAPFLSEEQRERIHTAAREICARAGYAGAGTVEFLVGADGTISFLEVNTRL 307 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIE 348 + P + +GL R+ Sbjct: 308 QVEH----PVSEETTGLDLVVEQLRIAA 331 >ref|NP_212334.1| (NC_001318) D-alanine--D-alanine ligase (ddlA) [Borrelia burgdorferi] sp|O51218|DDL_BORBU D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||H70124 D-alanine--D-alanine ligase (ddlA) homolog - Lyme disease spirochete gb|AAC66589.1| (AE001130) D-alanine--D-alanine ligase (ddlA) [Borrelia burgdorferi] Length = 356 Score = 208 bits (530), Expect = 6e-53 Identities = 116/355 (32%), Positives = 190/355 (52%), Gaps = 21/355 (5%) Query: 7 GIVFGGKSAEHEVSLQSAKNIVDA-IDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNADDP 64 ++FGG S EHE+S +SA +I A +D +++++ + IDK G W++ D+ + + Sbjct: 1 MLIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPINT 60 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 +P + +DV+FP+VHG GEDG++QG+L+V + Sbjct: 61 ------------DVLPIVSLLPGFGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMD 108 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN---RHNISFAEVESKLGLP 181 +P VG+ ++ SA +K K LL+ + + PFI + + V+ LG P Sbjct: 109 IPCVGAGIIGSAISSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEVLGYP 168 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 + VKPA GSS+G++ SE Q + A ++D +++E+ I+ REIEC+++GN+ + Sbjct: 169 VIVKPAVLGSSIGINVAYSENQIESFIKEALKYDLTIVIEKFIEAREIECSIIGNEKMKI 228 Query: 242 STCGE-IVLTSDFYAYDTKY--IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 + GE +V FY YD KY I + +PA + I+ A Y+ L GM Sbjct: 229 FSPGEVVVQDFIFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLTYKNLELRGM 288 Query: 299 ARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 ARVD F+ + + +NEINT+PGFT+ISM+ K+ GL + DL+ LI+ A + Sbjct: 289 ARVDFFVEKKSGTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYAFQ 343 >ref|NP_106581.1| (NC_002678) 3-methylcrotonyl-CoA carboxylase biotin-containing subunit [Mesorhizobium loti] dbj|BAB52367.1| (AP003008) 3-methylcrotonyl-CoA carboxylase biotin-containing subunit [Mesorhizobium loti] Length = 653 Score = 208 bits (529), Expect = 7e-53 Identities = 61/350 (17%), Positives = 121/350 (34%), Gaps = 27/350 (7%) Query: 24 AKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GK 82 K + +R ++ I + ++ Y H+A+ A + P + Sbjct: 2 GKLFSKILIANRGEIACRVIRTARRLGMATVGVYSDADAKSLHVAMAGEAVHIGASPVAE 61 Query: 83 HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKD 142 + + I P +G L E + A L F+G + A KD Sbjct: 62 SYLKADRIIDAALKTGAQAIHPG-YGFLSEAPDFVERVEAAGLVFIGPSASSIRAMGLKD 120 Query: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEE 202 KRL+ G+ + P + ++ + ++G P+ +K G G+ +V + Sbjct: 121 AAKRLMEITGVPVVPGYHGEAQDPALLASRAI--EIGFPVLIKARAGGGGKGMRRVETAG 178 Query: 203 QYAIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYA 255 ++A A+ A D KV++E+ ++ R IE V G+++ E Sbjct: 179 EFADALASAQREAKASFGDDKVLIEKYVEKPRHIEVQVFGDNHGNGVHLFERD--CSAQR 236 Query: 256 YDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE-----NE 310 K I+E + PE+ + AV+A + + +G ++ + + Sbjct: 237 RHQKVIEE-----APAPGMTPEMRVAMTHAAVKAAKAINYSGAGTIEFIVDASEGLRADR 291 Query: 311 VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 E+NT + P +G + R+ L D+ Sbjct: 292 FWFMEMNTRLQVEH----PMTEMVTGQDLVEWQIRVAAGELLPLTQDDIH 337 >ref|NP_376481.1| (NC_003106) 513aa long hypothetical biotin carboxylase [Sulfolobus tokodaii] dbj|BAB65590.1| (AP000983) 513aa long hypothetical biotin carboxylase [Sulfolobus tokodaii] Length = 513 Score = 208 bits (529), Expect = 7e-53 Identities = 53/342 (15%), Positives = 110/342 (31%), Gaps = 23/342 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHEHQL 87 + +R ++ + + + + + Y H+ A + P + + Sbjct: 6 KVLVANRGEIAVRVMKAIKEMGMKAVAVYSEADKYALHVKYADEAYYIGPPPALESYLNI 65 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + D + P +G L E+ + A L ++G V A A K KR+ Sbjct: 66 QAIIDAAEKAHADAVHPG-YGFLSENADFAEAVVKAGLTWIGPPVDAMRAIKSKLDGKRI 124 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + AG+ I+P ++ K+G P+ VK A G G+++V + +Q Sbjct: 125 AKQAGVPISPGSDGPV--DSLDEALKLAEKIGYPIMVKAAFGGGGTGITRVDNPDQLVEV 182 Query: 208 VD------LAFEFDHKVIVEQ-GIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 + + +E+ + R IE ++G+ E + K Sbjct: 183 WERNKRLAYQAFGKADLYIEKAAVNPRHIEFQLIGDKYGNYVVAWER--ECTIQRRNQKL 240 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD-VFLTPENEVVINEINTL 319 I+E A+ E +++ ++ Q + + + VF E E+N Sbjct: 241 IEE-----APSPALKMEERERMFEPIIKFGQIIHYYTLGTFETVFSDTTREFYFLELNKR 295 Query: 320 PGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALK 361 + P + L + + K Sbjct: 296 LQVEH----PITEMIFRIDLVKLQINIAAGEPLPFTQEELNK 333 >gb|AAD37851.1|AF126429_1 (AF126429) JadJ [Streptomyces venezuelae] Length = 584 Score = 208 bits (529), Expect = 9e-53 Identities = 48/326 (14%), Positives = 99/326 (29%), Gaps = 22/326 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ-VPGKHEHQL 87 + +R ++ + + + Y D H+ A +L P + Sbjct: 3 KVLIANRGEIAVRVARACRDAGIGSVAVYAEPDRDALHVRAADEAFALGGDTPATSYLDM 62 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 D + P +G L E+ + A L ++G A DK + + Sbjct: 63 AKVLQAAADSGADAVHPG-YGFLSENAEFAQAVLDAGLTWIGPPPQAIRDLGDKVAARHI 121 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + AG + + GLP+ +K A G G+ + E+ Sbjct: 122 AQRAGAPLVAGT--PDPVSGADEVVAFAEEHGLPIAIKAAFGGGGRGLKVARTLEEVPEL 179 Query: 208 VDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 D A + VE+ + R +E L + + K Sbjct: 180 YDSAVREAVAAFGRGECFVERYLDKPRHVETQCLADQHGNVVVVSTRD--CSLQRRHQKL 237 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E ++ N ++ A + + G G V+ + + + E+NT Sbjct: 238 VEE-----APAPFLSEAQNAELYAASKAILKEAGYVGAGTVEFLVGTDGTISFLEVNTRL 292 Query: 321 GFTNISMYPKLWQASGLGYTDLITRL 346 + P + +G+ + R+ Sbjct: 293 QVEH----PVTEEVTGIDLVREMFRI 314 >ref|NP_266934.1| (NC_002662) biotin carboxylase (EC 6.3.4.14) [Lactococcus lactis subsp. lactis] gb|AAK04876.1|AE006311_7 (AE006311) biotin carboxylase (EC 6.3.4.14) [Lactococcus lactis subsp. lactis] Length = 455 Score = 207 bits (528), Expect = 1e-52 Identities = 58/344 (16%), Positives = 112/344 (31%), Gaps = 23/344 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 + +R ++ + I + V + Y D H+ L A + + Sbjct: 1 MFNKILIANRGEIAVRIIRAARELGVGTVAIYSTADRDALHVHLADEAICVGPARSTESY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + I P G L E+ + N+ F+G DK Sbjct: 61 LNMNNILSAAVATGAQAIHPGF-GFLSENSKFARLCEEMNIKFIGPSAKVMDMMGDKINA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + + AG+ + P ++ ++G P+ +K + G G+ KV + E+ Sbjct: 120 RAEMIKAGVPVTPGSEGEVH--TTDEAVKIAEEIGYPIMLKASAGGGGKGIRKVNNVEEL 177 Query: 205 AI------AVDLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A + + +E+ I R IE +LG+ GE + Sbjct: 178 VPAFEAAQAEAQAAFGNGAMFIERMIFPARHIEVQILGDSQGNVIHLGERD--CSLQRNN 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTP-ENEVVINEI 316 K ++E AI + ++I A AV+A Q + ++ L + E+ Sbjct: 236 QKVLEES-----PSVAIGHTLRNEITAAAVKAAQHVSYENAGTIEFLLDESSGKFYFMEM 290 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 NT + P SG+ R+ ++ Sbjct: 291 NTRVQVEH----PVTEFVSGVDIVKEQIRVANGNELSVKQEDVT 330 >ref|NP_249185.1| (NC_002516) probable acyl-CoA carboxylase subunit [Pseudomonas aeruginosa] pir||A83585 probable acyl-CoA carboxylase subunit PA0494 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG03883.1|AE004486_12 (AE004486) probable acyl-CoA carboxylase subunit [Pseudomonas aeruginosa] Length = 458 Score = 207 bits (528), Expect = 1e-52 Identities = 56/341 (16%), Positives = 103/341 (29%), Gaps = 24/341 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HEHQL 87 + +R ++ + I + + D L + + Sbjct: 7 KLLVANRGEIAVRIIRAAQALGIPTVAVCSEADRDSLAARLADEVRLIGPARADRSYLDI 66 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 D I P +G L E+ + ++ A L FVG + DK +R Sbjct: 67 EAILMAARETGADSIHPG-YGFLSENPAFAEAVQAAGLVFVGPEAQTIRRMGDKAEARRT 125 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 AG+ + P + + ++G PL VK + G G+ ++ Sbjct: 126 AMAAGVPVVPGSPGELGD--LDAALACAEEVGYPLLVKASAGGGGRGIRIAHDADELRRE 183 Query: 208 V------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A V +E+ I + R IE +LG+ +A E K Sbjct: 184 FPIAQREAQAAFGSPAVYLERFIRQARHIEVQILGDGE-RAVHLFER--ECSLQRRRQKV 240 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTP-ENEVVINEINTL 319 +E AA+ + AV+ Q+LG G ++ E E+NT Sbjct: 241 FEE-----APSAALDGAQRQALCESAVRLAQSLGYRGAGTLEYLFDAHSGEFFFIEMNTR 295 Query: 320 PGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + P +G+ + R+ ++ Sbjct: 296 IQVEH----PVSEMVTGIDLVQAMLRIAAGEALPWRQEDIR 332 >ref|NP_245081.1| (NC_002663) DdlB [Pasteurella multocida] sp|P57819|DDL_PASMU D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAK02228.1| (AE006049) DdlB [Pasteurella multocida] Length = 309 Score = 207 bits (527), Expect = 1e-52 Identities = 107/352 (30%), Positives = 174/352 (49%), Gaps = 47/352 (13%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 +++ ++ ++ GG SAE EVSL S + +++A+ + FD + + Sbjct: 5 LKQEKIAVLLGGTSAEREVSLDSGQAVLNALLSAGFDAHPIDPKTFPVATL--------- 55 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 D +F I+HG GEDG++QG+L Sbjct: 56 ----------------------------------KEQGFDRVFNILHGRGGEDGTMQGLL 81 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 +P+ G V+ SA MDK TK L + GL +A +T+AN ++ + V KLGL Sbjct: 82 EQIGIPYTGCGVMTSALTMDKMRTKMLWKAFGLPVAEMEIVTKANVGELNPSAVVEKLGL 141 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+ VKP+ +GSSVG++KV E AVD A ++D V++E+ + G E VL N+ Sbjct: 142 PVMVKPSLEGSSVGLTKVKRVEDLKSAVDFALKYDDTVLIEEWLSGAEFTVPVLDNE--- 198 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 IV +FY Y+ KYI D + P+ ++ E D+++ + QAY +GC G +R Sbjct: 199 VLPSIRIVPEGEFYDYEAKYI-SDNTQYFCPSGLSAEREDELKQLVKQAYDVVGCRGWSR 257 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 +DV L + + E+NT PG T+ S++PK G + L+ +++EL+ E Sbjct: 258 IDVMLDGNDAFRLVEVNTNPGMTSHSLFPKSAATVGYSFEQLVVKILELSAE 309 >ref|NP_459135.1| (NC_003197) D-alanine-D-alanine ligase B, affects cell division [Salmonella typhimurium LT2] gb|AAL19094.1| (AE008700) D-alanine-D-alanine ligase B, affects cell division [Salmonella typhimurium LT2] Length = 306 Score = 207 bits (527), Expect = 1e-52 Identities = 101/347 (29%), Positives = 163/347 (46%), Gaps = 50/347 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 ++ ++ GG SAE +VSL S ++ + + + + Sbjct: 4 KIAVLLGGTSAERDVSLNSGAAVLAGLREGGINAHPVDPQ-------------------- 43 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 +F +HG GEDG+LQGML + Sbjct: 44 -----------------------EVDVAQLKAMGFQKVFIALHGRGGEDGTLQGMLELLG 80 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHN---ISFAEVESKLGLP 181 LP+ GS V+ASA MDK +K L + AGL +AP++ LTRA S LGLP Sbjct: 81 LPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSEEQKARISALGLP 140 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 L VKP+ +GSSVG++KV E A+ LAF+ D ++++E+ + G E A++G + Sbjct: 141 LIVKPSREGSSVGMTKVVEENALQGALSLAFQHDDEILIEKWLCGPEFTVAIVGEE---I 197 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 I FY Y+ KY+ D + PA + ++++ +QA++ LGC G R+ Sbjct: 198 LPSIRIQPAGTFYDYEAKYL-SDETQYFCPAGLDASQEAALQSLVLQAWKALGCTGWGRI 256 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 DV L + + + E NT PG T+ S+ P + +G+ ++ L+ R++E Sbjct: 257 DVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 >emb|CAC22142.1| (AL512902) putative acyl-CoA carboxylase complex A subunit (fragment) [Streptomyces coelicolor] Length = 492 Score = 207 bits (526), Expect = 2e-52 Identities = 47/326 (14%), Positives = 100/326 (30%), Gaps = 22/326 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ-VPGKHEHQL 87 + +R ++ + ++ + Y D H+ A +L P + Sbjct: 3 KVLIANRGEIAVRVARACRDAGIASVAVYADPDRDALHVRAADEAFALGGDTPATSYLDI 62 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 D I P +G L E+ + A L ++G A DK + + Sbjct: 63 AKVLKAARESGADAIHPG-YGFLSENAEFAQAVLDAGLIWIGPPPHAIRDLGDKVAARHI 121 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + AG + + GLP+ +K A G G+ + E+ Sbjct: 122 AQRAGAPLVAGT--PDPVSGADEVVAFAKEHGLPIAIKAAFGGGGRGLKVARTLEEVPEL 179 Query: 208 VDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 D A + VE+ + R +E L + + K Sbjct: 180 YDSAVREAVAAFGRGECFVERYLDKPRHVETQCLADTHGNVVVVSTRD--CSLQRRHQKL 237 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E ++ +++ + + + G G V+ + + + E+NT Sbjct: 238 VEE-----APAPFLSEAQTEQLYSSSKAILKEAGYVGAGTVEFLVGMDGTISFLEVNTRL 292 Query: 321 GFTNISMYPKLWQASGLGYTDLITRL 346 + P + +G+ + R+ Sbjct: 293 QVEH----PVTEEVAGIDLVREMFRI 314 >ref|NP_274851.1| (NC_003112) carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis MC58] pir||D81035 carbamoyl-phosphate synthase (glutamine-hydrolyzing) (EC 6.3.5.5) large chain NMB1855 [similarity] - Neisseria meningitidis (group B strain MD58) gb|AAF42189.1| (AE002535) carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis MC58] Length = 1071 Score = 207 bits (526), Expect = 2e-52 Identities = 58/356 (16%), Positives = 123/356 (34%), Gaps = 52/356 (14%) Query: 2 EKLRVGIVFGGKSA-----EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 ++ +V I+ GG + E + A A+ +S F+ +++ + + D S Sbjct: 552 DRKKVMILGGGPNRIGQGIEFDYCCVHA---ALALRESGFETIMVNCNPETVSTDFDTS- 607 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L V ++ +I GQ + Sbjct: 608 ------DRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTPLKL----------------- 644 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L + +G+ + A D++ +++L D GL P + Sbjct: 645 ANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALV----KAE 700 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEF--DHKVIVEQGI-KGREIECAV 233 ++G PL V+P+ + V S E+ + A + D V+++ + E++ Sbjct: 701 EIGYPLVVRPSYVLGGRAMQVVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDC 760 Query: 234 LGNDNPQAS-TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + + + V + ++ D + P +++ EI D+IR Sbjct: 761 VSDGKDVVIGGIMQHVEQAGIHS-------GDSGCSLPPYSLSEEIQDEIRRQTKAMAYA 813 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 LG G+ V + + V + E+N T P + +A+G+ + R + Sbjct: 814 LGVVGLMNVQFAV-QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKVGARCMA 864 Score = 149 bits (377), Expect = 3e-35 Identities = 48/371 (12%), Positives = 116/371 (30%), Gaps = 57/371 (15%) Query: 4 LRVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYL 58 + I+ G++ E + S A+ + + V+L+ + Sbjct: 8 KSILIIGAGPIVIGQACEFDYS---GAQACKALREEGYKVILVNSNPATIMTD------- 57 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ- 117 + + + D I P + G + +L Sbjct: 58 --------PEMADVTYIEPIMW----QTVEKIIA---KERPDAILPTMGGQTALNCALDL 102 Query: 118 ---GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 G+L N+ +G+ A D+ K + GL+ N + Sbjct: 103 ARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFVCHTMNEALAA---- 158 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKG-REIEC 231 + ++G P ++P+ G +++++ + F+ ++++EQ + G +E E Sbjct: 159 QEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQSVLGWKEYEM 218 Query: 232 AVLGNDNPQASTC--GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 V+ + N E + D V + + +R ++ Sbjct: 219 EVVRDKNDNCIIICSIENFDPMGVHT-------GDSITVAPAQTLTDKEYQIMRNASLAV 271 Query: 290 YQTLGC-AGMARVDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 + +G G + V + P E+++ E+N ++ +A+G + + + Sbjct: 272 LREIGVDTGGSNVQFAVNPANGEMIVIEMNPRVSRSSA----LASKATGFPIAKVAAK-L 326 Query: 348 ELALERHAADN 358 + N Sbjct: 327 AVGFTLDELRN 337 >ref|NP_454742.1| (NC_003198) D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica serovar Typhi] emb|CAD01287.1| (AL627265) D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica serovar Typhi] Length = 306 Score = 206 bits (525), Expect = 2e-52 Identities = 102/347 (29%), Positives = 163/347 (46%), Gaps = 50/347 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 ++ ++ GG SAE +VSL S ++ + + D + Sbjct: 4 KIAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQ-------------------- 43 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 +F +HG GEDG+LQGML + Sbjct: 44 -----------------------EVDVAQLKAMGFQKVFIALHGRGGEDGTLQGMLELLG 80 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHN---ISFAEVESKLGLP 181 LP+ GS V+ASA MDK +K L + AGL +AP++ LTRA S LGLP Sbjct: 81 LPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSEEQKARISALGLP 140 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 L VKP+ +GSSVG++KV E A+ LAF+ D ++++E+ + G E A++G + Sbjct: 141 LIVKPSREGSSVGMTKVVEENALQGALSLAFQHDDEILIEKWLCGPEFTVAIVGEE---I 197 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 I FY Y+ KY+ D + PA + ++++ +QA++ LGC G R+ Sbjct: 198 LPSIRIQPAGTFYDYEAKYL-SDETQYFCPAGLEASQEAALQSLVLQAWKALGCTGWGRI 256 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 DV L + + + E NT PG T+ S+ P + +G+ ++ L+ R++E Sbjct: 257 DVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 >ref|NP_246444.1| (NC_002663) CarB [Pasteurella multocida] gb|AAK03589.1| (AE006187) CarB [Pasteurella multocida] Length = 1068 Score = 206 bits (525), Expect = 2e-52 Identities = 51/356 (14%), Positives = 122/356 (33%), Gaps = 52/356 (14%) Query: 2 EKLRVGIVFGGKSA-----EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 +K ++ I+ GG + E + A A+ ++ F+ +++ + + D S Sbjct: 552 DKKKIMILGGGPNRIGQGIEFDYCCVHA---SLALREAGFETIMVNCNPETVSTDFDTS- 607 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L + + H +I GQ + Sbjct: 608 ------DRLYFEPLTLEDVLEIIHVEKPHGVIVHYGGQTPLKL----------------- 644 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L + +G+ + A D++ +++L L T A Sbjct: 645 ANDLHANGVNIIGTSADSIDAAEDRERFQQILHKLHLKQPTNRTARNAEEAVKL----AE 700 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLA--FEFDHKVIVEQGI-KGREIECAV 233 ++G PL V+P+ + V + ++ + A D ++++ + E++ Sbjct: 701 EVGYPLVVRPSYVLGGRAMQIVYNVDELQRYMREAVSVSNDSPILLDHFLNNAIEVDVDC 760 Query: 234 LGNDNPQAS-TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + + + + + ++ D A + P +++ E+ D+IR + Sbjct: 761 ICDGAEVVIGGIMQHIEQAGIHS-------GDSACSLPPYSLSQEVQDEIRRQTAEMAFA 813 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 LG G+ V + + + + E+N T P + +A+G + R++ Sbjct: 814 LGVKGLMNVQFAV-QDGVIYVLEVNPRASRT----VPFVSKATGRPLAKIAARVMA 864 Score = 152 bits (383), Expect = 6e-36 Identities = 48/370 (12%), Positives = 117/370 (30%), Gaps = 57/370 (15%) Query: 5 RVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLL 59 + I+ G++ E + S A+ + + VVL+ + D ++ Sbjct: 9 TILIIGAGPIVIGQACEFDYS---GAQACKALREEGYKVVLVNSNPATIMTDPDMADVT- 64 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ-- 117 + + D I P + G + +L Sbjct: 65 ---------------------YIEPIEWRTVEKIIEKERPDAILPTMGGQTALNCALDLS 103 Query: 118 --GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVE 175 G+L+ N+ +G+ A D+ K + GL+ + Sbjct: 104 KNGVLKKYNVELIGAKEDAIDKAEDRGRFKEAMEKIGLSTPKSFVCHTLEEA----WAAQ 159 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKG-REIECA 232 S++G P ++P+ G +++++ + F+ ++++EQ + G +E E Sbjct: 160 SEVGFPTLIRPSFTMGGSGGGIAYNKDEFYAICERGFDASPTHELLIEQSVLGWKEYEME 219 Query: 233 VLGNDNPQASTC--GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 V+ + E + D V + + +R ++ Sbjct: 220 VVRDKADNCIIVCSIENFDPMGVHT-------GDSITVAPAQTLTDKEYQIMRNASIAVL 272 Query: 291 QTLGC-AGMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 + +G G + V + E+++ E+N ++ +A+G + + + Sbjct: 273 REIGVDTGGSNVQFAINPENGEMIVIEMNPRVSRSSA----LASKATGFPIAKVAAK-LA 327 Query: 349 LALERHAADN 358 + + N Sbjct: 328 VGYTLNELRN 337 >emb|CAC21629.1| (AL512667) putative acyl-CoA carboxylase complex A subunit [Streptomyces coelicolor] Length = 590 Score = 206 bits (524), Expect = 3e-52 Identities = 47/326 (14%), Positives = 100/326 (30%), Gaps = 22/326 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ-VPGKHEHQL 87 + +R ++ + ++ + Y D H+ A +L P + Sbjct: 3 KVLIANRGEIAVRVARACRDAGIASVAVYADPDRDALHVRAADEAFALGGDTPATSYLDI 62 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 D I P +G L E+ + A L ++G A DK + + Sbjct: 63 AKVLKAARESGADAIHPG-YGFLSENAEFAQAVLDAGLIWIGPPPHAIRDLGDKVAARHI 121 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + AG + + GLP+ +K A G G+ + E+ Sbjct: 122 AQRAGAPLVAGT--PDPVSGADEVVAFAKEHGLPIAIKAAFGGGGRGLKVARTLEEVPEL 179 Query: 208 VDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 D A + VE+ + R +E L + + K Sbjct: 180 YDSAVREAVAAFGRGECFVERYLDKPRHVETQCLADTHGNVVVVSTRD--CSLQRRHQKL 237 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E ++ +++ + + + G G V+ + + + E+NT Sbjct: 238 VEE-----APAPFLSEAQTEQLYSSSKAILKEAGYVGAGTVEFLVGMDGTISFLEVNTRL 292 Query: 321 GFTNISMYPKLWQASGLGYTDLITRL 346 + P + +G+ + R+ Sbjct: 293 QVEH----PVTEEVAGIDLVREMFRI 314 >ref|NP_414634.1| (NC_000913) D-alanine-D-alanine ligase B, affects cell division [Escherichia coli K12] sp|P07862|DDLB_ECOLI D-ALANINE--D-ALANINE LIGASE B (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||CEECDL D-alanine--D-alanine ligase (EC 6.3.2.4) B - Escherichia coli pdb|1IOV| Complex Of D-Ala:d-Ala Ligase With Adp And A Phosphoryl Phosphonate pdb|2DLN| Mol_id: 1; Molecule: D-Alanine--D-Alanine Ligase; Chain: Null; Ec: 6.3.2.4 emb|CAA38869.1| (X55034) D-Ala:D-Ala ligase (Ddl) [Escherichia coli] gb|AAA23672.1| (M14029) ddl cell wall enzyme [Escherichia coli] gb|AAA23815.1| (K02668) D-alanine:D-alanine ligase [Escherichia coli] dbj|BAA01357.1| (D10483) D-alanine-D-alanine ligase [Escherichia coli] gb|AAC73203.1| (AE000118) D-alanine-D-alanine ligase B, affects cell division [Escherichia coli K12] Length = 306 Score = 206 bits (523), Expect = 4e-52 Identities = 104/347 (29%), Positives = 167/347 (47%), Gaps = 50/347 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 ++ ++ GG SAE EVSL S ++ + + D + Sbjct: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDP--------------KEVDVTQ 49 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 +F +HG GEDG+LQGML + Sbjct: 50 L-----------------------------KSMGFQKVFIALHGRGGEDGTLQGMLELMG 80 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL---GLP 181 LP+ GS V+ASA MDK +K L + AGL +AP++ LTRA + +++ GLP Sbjct: 81 LPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLP 140 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 + VKP+ +GSSVG+SKV +E A+ LAF+ D +V++E+ + G E A+LG + Sbjct: 141 VIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE---I 197 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 I + FY Y+ KY+ D + PA + ++A+ ++A+ TLGC G R+ Sbjct: 198 LPSIRIQPSGTFYDYEAKYL-SDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRI 256 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 DV L + + + E NT PG T+ S+ P + +G+ ++ L+ R++E Sbjct: 257 DVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 >ref|NP_283414.1| (NC_003116) carbamoyl phosphate synthase large subunit [Neisseria meningitidis Z2491] pir||F81979 carbamoyl-phosphate synthase (glutamine-hydrolyzing) (EC 6.3.5.5) large chain NMA0602 [imported] - Neisseria meningitidis (group A strain Z2491) emb|CAB83892.1| (AL162753) carbamoyl phosphate synthase large subunit [Neisseria meningitidis Z2491] Length = 1071 Score = 205 bits (522), Expect = 5e-52 Identities = 59/356 (16%), Positives = 123/356 (33%), Gaps = 52/356 (14%) Query: 2 EKLRVGIVFGGKSA-----EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 ++ +V I+ GG + E + A A+ +S F+ +++ + + D S Sbjct: 552 DRKKVMILGGGPNRIGQGIEFDYCCVHA---ALALRESGFETIMVNCNPETVSTDFDTS- 607 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L V ++ +I GQ + Sbjct: 608 ------DRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTPLKL----------------- 644 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L + +G+ + A D++ +++L D GL P + Sbjct: 645 ANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALV----KAE 700 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEF--DHKVIVEQGI-KGREIECAV 233 ++G PL V+P+ + V S EQ + A + D V+++ + E++ Sbjct: 701 EIGYPLVVRPSYVLGGRAMQIVHSAEQLQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDC 760 Query: 234 LGNDNPQAS-TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + + + V + ++ D + P +++ EI D+IR Sbjct: 761 VSDGKDVVIGGIMQHVEQAGIHS-------GDSGCSLPPYSLSEEIQDEIRRQTKAMAYA 813 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 LG G+ V + + V + E+N T P + +A+G+ + R + Sbjct: 814 LGVVGLMNVQFAV-QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKVGARCMA 864 Score = 149 bits (377), Expect = 3e-35 Identities = 47/371 (12%), Positives = 115/371 (30%), Gaps = 57/371 (15%) Query: 4 LRVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYL 58 + I+ G++ E + S A+ + + V+L+ + Sbjct: 8 KSILIIGAGPIVIGQACEFDYS---GAQACKALREEGYKVILVNSNPATIMTD------- 57 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ- 117 + + + D I P + G + +L Sbjct: 58 --------PEMADVTYIEPIMW----QTVEKIIA---KERPDAILPTMGGQTALNCALDL 102 Query: 118 ---GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 G+L N+ +G+ A D+ K + GL+ N + Sbjct: 103 ARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFVCHTMNEALAA---- 158 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKG-REIEC 231 + ++G P ++P+ G +++++ + F+ ++++EQ + G +E E Sbjct: 159 QEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQSVLGWKEYEM 218 Query: 232 AVLGNDNPQASTC--GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 V+ + N E + D V + + +R ++ Sbjct: 219 EVVRDKNDNCIIICSIENFDPMGVHT-------GDSITVAPAQTLTDKEYQIMRNASLAV 271 Query: 290 YQTLGC-AGMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 + +G G + V + E+++ E+N ++ +A+G + + + Sbjct: 272 LREIGVDTGGSNVQFAVNPENGEMIVIEMNPRVSRSSA----LASKATGFPIAKVAAK-L 326 Query: 348 ELALERHAADN 358 + N Sbjct: 327 AVGFTLDELRN 337 >sp|Q9TTS3|COA1_BOVIN ACETYL-COA CARBOXYLASE 1 (ACC-ALPHA) [INCLUDES: BIOTIN CARBOXYLASE ] emb|CAB56826.1| (AJ132890) acetyl-CoA-carboxylase [Bos taurus] Length = 2346 Score = 205 bits (522), Expect = 6e-52 Identities = 51/383 (13%), Positives = 119/383 (30%), Gaps = 49/383 (12%) Query: 10 FGGKSAEHEVSLQS----AKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 FGG +V + + A + +I + ++ + ++ ++ V L + Sbjct: 112 FGGNKVIEKVLIANNGIAAVKCMRSIRRWSYE--MFRNERAIRFVVMVTPEDLKANAE-- 167 Query: 66 HIALRPSATSLAQVPGKHEH-QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 +I + + P + + + + V ++ G E+ L +L Sbjct: 168 YIKMADHYVPVPGGPNNNNYANVELILDIAKRIPVQAVWAG-WGHASENPKLPELLLKNG 226 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFI----------------TLTRANR-- 166 + F+G A A DK + + + AG+ P+ L Sbjct: 227 IAFMGPPSQAMWALGDKIASSIVAQTAGIPTLPWSGSGLCVDWHENDFSKRILNVPQELY 286 Query: 167 ------HNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV---DLAFEFDHK 217 + ++G P+ +K + G G+ KV + + + Sbjct: 287 EKGYVKDVDDGLKAAEEVGYPVMIKASEGGGGKGIRKVNNADDFPNLFRQVQAEVPGSPI 346 Query: 218 VIVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPE 277 ++ + R +E +L + A + K I+E A + PA Sbjct: 347 FVMRLAKQSRHLEVQILADQYGNAISLFGRD--CSVQRRHQKIIEEAPAAIATPA----- 399 Query: 278 INDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGL 337 + + + AV+ + +G V+ + + E+N + ++ L Sbjct: 400 VFEHMEQCAVKLARMVGYVSAGTVEYLYSQDGSFYFLELNPRLQVEH--PCTEMVADVNL 457 Query: 338 GYTDLITRLIELALERHAADNAL 360 L I + + + + Sbjct: 458 PAAQL---QIAMGIPLYRIKDIR 477 >emb|CAC84690.1| (AJ306727) D-Ala:D-Lac ligase [Enterococcus faecium] Length = 289 Score = 205 bits (522), Expect = 6e-52 Identities = 102/305 (33%), Positives = 162/305 (52%), Gaps = 21/305 (6%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I ID +FD +GI K G W + Sbjct: 1 MNRIKVAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNG-QPLPTVDVIFPIVHGTLGEDGSLQGM 119 AD + P + H L+ + +DV FP++HG GEDG++QG+ Sbjct: 61 AD----------SLPAILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGL 110 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 111 FVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPE------AGALT 164 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GV+KV E+ A++ A ++D K+++EQ I G E+ CAV+GN+ + Sbjct: 165 YPVFVKPARSGSSFGVTKVNGTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDD 224 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDG---AKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L+ + + E G A + VPA I E +++ A + Y+ LGC Sbjct: 225 LIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERKRVQETAKKVYRVLGC 284 Query: 296 AGMAR 300 G+AR Sbjct: 285 RGLAR 289 >ref|NP_344948.1| (NC_003028) acetyl-CoA carboxylase, biotin carboxylase [Streptococcus pneumoniae TIGR4] gb|AAF98279.1|AF197933_9 (AF197933) acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus pneumoniae] gb|AAK74588.1| (AE007354) acetyl-CoA carboxylase, biotin carboxylase [Streptococcus pneumoniae TIGR4] Length = 455 Score = 205 bits (521), Expect = 6e-52 Identities = 58/344 (16%), Positives = 113/344 (31%), Gaps = 23/344 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 + +R ++ + I + ++ + Y + H L A + + Sbjct: 1 MFRKILIANRGEIAVRIIRAARELGIATVAVYSTADKEALHTLLADEAVCIGPGKATESY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + L + I P G L E+ M + F+G DK Sbjct: 61 LNINAVLSAAVLTEAEAIHPGF-GFLSENSKFATMCEEVGIKFIGPSGHVMDMMGDKINA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + + AG+ + P N V K+G P+ +K + G G+ KV + Sbjct: 120 RAQMIKAGVPVIPGSDGEVHNSEEALI--VAEKIGYPVMLKASAGGGGKGIRKVEKPDDL 177 Query: 205 AIAVDLAFE------FDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A + A + + +E+ I R IE +LG+++ GE + Sbjct: 178 VSAFETASSEAKANYGNGAMYIERVIYPARHIEVQILGDEHGHVIHLGERD--CSLQRNN 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTP-ENEVVINEI 316 K ++E AI + +I A AV+A + +G ++ L + E+ Sbjct: 236 QKVLEES-----PSIAIGKTLRHEIGAAAVRAAEFVGYENAGTIEFLLDEASSNFYFMEM 290 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 NT + P SG+ + ++ + Sbjct: 291 NTRVQVEH----PVTEFVSGVDIVKEQICIAAGQPLSVKQEDIV 330 >gb|AAA53140.1| (U08469) 3-methylcrotonyl-CoA carboxylase, biotin-carrier domain [Glycine max] Length = 674 Score = 205 bits (521), Expect = 6e-52 Identities = 51/299 (17%), Positives = 100/299 (33%), Gaps = 23/299 (7%) Query: 52 SDASNYLLNADDPAHIALRPSATSLAQVPGK-HEHQLIDAQNGQPLPTVDVIFPIVHGTL 110 + Y D H+A A + P + + I P +G L Sbjct: 1 QTVAVYSDADRDSLHVATADEAIRIGPPPARLSYLNGASIVDAAIRSGAQAIHPG-YGFL 59 Query: 111 GEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS 170 E + + L F+G A DK +KR++ AG+ + P ++ Sbjct: 60 SESADFAKLCEESGLTFIGPPASAIRDMGDKSASKRIMGAAGVPLVPGYHGY--DQDIEK 117 Query: 171 FAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV------DLAFEFDHKVIVEQGI 224 ++G P+ +KP + G G+ V + +++ + A + +++E+ I Sbjct: 118 MKLEADRIGYPVLIKPTHGGGGKGMRIVHTPDEFVESFLAAQREAAASFGVNTILLEKYI 177 Query: 225 -KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIR 283 + R IE + G+ + E K I+E I+ + ++ Sbjct: 178 TRPRHIEVQIFGDKHGNVLHLYERD--CSVQRRHQKIIEE-----APAPNISADFRAQLG 230 Query: 284 AIAVQAYQTLGCAGMARVDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTD 341 AV A + + V+ + +E E+NT + P G + Sbjct: 231 VAAVSAAKAVNYYNAGTVEFIVDTVSDEFYFMEMNTRLQVEH----PVTEMIVGQDLVE 285 >ref|NP_357979.1| (NC_003098) Biotin carboxylase (a subunit of acetyl-CoA carboxylase (ACC) [Streptococcus pneumoniae R6] gb|AAK99189.1| (AE008418) Biotin carboxylase (a subunit of acetyl-CoA carboxylase (ACC) [Streptococcus pneumoniae R6] Length = 455 Score = 205 bits (521), Expect = 6e-52 Identities = 58/344 (16%), Positives = 112/344 (31%), Gaps = 23/344 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 + +R ++ + I + ++ + Y + H L A + + Sbjct: 1 MFRKILIANRGEIAVRIIRAARELGIATVAVYSTADKEALHTLLADEAVCIGPGKATESY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + L + I P G L E+ M + F+G DK Sbjct: 61 LNINAVLSAAVLTEAEAIHPGF-GFLSENSKFATMCEEVGIKFIGPSGHVMDMMGDKINA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + + AG+ + P N V K+G P+ +K + G G+ KV + Sbjct: 120 RAQMIKAGVPVIPGSDGEVHNSEEALI--VAEKIGYPVMLKASAGGGGKGIRKVEKPDDL 177 Query: 205 AIAVDLAFE------FDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A + A + + +E+ I R IE +LG+++ GE + Sbjct: 178 VSAFETASSEAKANYGNGAMYIERVIYPARHIEVQILGDEHGHVIHLGERD--CSLQRNN 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTP-ENEVVINEI 316 K ++E AI + +I A AV+A + +G ++ L E+ Sbjct: 236 QKVLEES-----PSIAIGKTLRHEIGAAAVRAAEFVGYENAGTIEFLLDEASRNFYFMEM 290 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 NT + P SG+ + ++ + Sbjct: 291 NTRVQVEH----PVTEFVSGVDIVKEQICIAAGQPLSVKQEDIV 330 >ref|NP_285788.1| (NC_002655) D-alanine-D-alanine ligase B, affects cell division [Escherichia coli O157:H7 EDL933] ref|NP_308123.1| (NC_002695) D-alanine-D-alanine ligase B [Escherichia coli O157:H7] gb|AAG54396.1|AE005186_2 (AE005186) D-alanine-D-alanine ligase B, affects cell division [Escherichia coli O157:H7 EDL933] dbj|BAB33519.1| (AP002550) D-alanine-D-alanine ligase B [Escherichia coli O157:H7] Length = 306 Score = 205 bits (521), Expect = 7e-52 Identities = 103/347 (29%), Positives = 166/347 (47%), Gaps = 50/347 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 ++ ++ GG SAE EVSL S ++ + + D + Sbjct: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDP--------------KEVDVTQ 49 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 +F +HG GEDG+LQGML + Sbjct: 50 L-----------------------------KSMGFQKVFIALHGRGGEDGTLQGMLELMG 80 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL---GLP 181 LP+ GS V+ASA MDK +K L + AGL +AP++ LTR + +++ GLP Sbjct: 81 LPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRVEFEKGLSDKQLAEISALGLP 140 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 + VKP+ +GSSVG+SKV +E A+ LAF+ D +V++E+ + G E A+LG + Sbjct: 141 VIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE---I 197 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 I + FY Y+ KY+ D + PA + ++A+ ++A+ TLGC G R+ Sbjct: 198 LPSVRIQPSGTFYDYEAKYL-SDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRI 256 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 DV L + + + E NT PG T+ S+ P + +G+ ++ L+ R++E Sbjct: 257 DVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 >ref|NP_266825.1| (NC_002662) pyruvate carboxylase (6.4.1.1) [Lactococcus lactis subsp. lactis] gb|AAK04767.1|AE006300_2 (AE006300) pyruvate carboxylase (6.4.1.1) [Lactococcus lactis subsp. lactis] Length = 1137 Score = 204 bits (520), Expect = 8e-52 Identities = 54/338 (15%), Positives = 109/338 (31%), Gaps = 26/338 (7%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ--VPGKHE 84 + + +R ++ + + +S + Y + H + + Q P Sbjct: 1 MKKLLVANRGEIAVRVFRACNELGLSTVAVYAREDEYSVHRFKADESYLIGQGKKPIDAY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D D I P +G L E+ +R A L FVG ++ DK Sbjct: 61 LDIDDIIRVALESGADAIHPG-YGLLSENLEFATKVRAAGLVFVGPELHHLDIFGDKIKA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K +A + P T E G P+ +K A G G+ +++ + Sbjct: 120 KAAADEAKVPGIPG---TNGAVDIDGALEFAKTYGYPVMIKAALGGGGRGMRVASNDAEM 176 Query: 205 AIAVDLA------FEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A ++ VE+ I + IE +LG+ + E + Sbjct: 177 HDGYARAKSEAIGAFGSGEIYVEKYIENPKHIEVQILGDSHGNIIHLHERD--CSVQRRN 234 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+ + ++ + ++I AV+ + +G V+ + +++ E+N Sbjct: 235 QKVIE-----IAPAVGLSLDFRNEICEAAVKLCKNVGYVNAGTVEFLV-KDDKFYFIEVN 288 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 + +G+ LI + H Sbjct: 289 PRVQVEHT----ITELITGVDIVQAQI-LIAQGKDLHR 321 >sp|Q28559|COA1_SHEEP ACETYL-COA CARBOXYLASE 1 (ACC-ALPHA) [INCLUDES: BIOTIN CARBOXYLASE ] emb|CAA56352.1| (X80045) acetyl-CoA carboxylase [Ovis aries] Length = 2346 Score = 204 bits (520), Expect = 8e-52 Identities = 51/383 (13%), Positives = 119/383 (30%), Gaps = 49/383 (12%) Query: 10 FGGKSAEHEVSLQS----AKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 FGG +V + + A + +I + ++ + ++ ++ V L + Sbjct: 112 FGGNKVIEKVLIANNGIAAVKCMRSIRRWSYE--MFRNERAIRFVVMVTPEDLKANAE-- 167 Query: 66 HIALRPSATSLAQVPGKHEH-QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 +I + + P + + + + V ++ G E+ L +L Sbjct: 168 YIKMADHYVPVPGGPNNNNYANVELILDIARRIPVQAVWAG-WGHASENPKLPELLLKNG 226 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFI----------------TLTRANR-- 166 + F+G A A DK + + + AG+ P+ L Sbjct: 227 IAFMGPPSQAMWALGDKIASSIVAQTAGIPTLPWSGSGLCVDWHENDFSKRILNVPQELY 286 Query: 167 ------HNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV---DLAFEFDHK 217 + ++G P+ +K + G G+ KV + + + Sbjct: 287 EKGYVKDVDDGLKAAEEVGYPVMIKASEGGGGKGIRKVNNADDFPNLFRQVQAEVPGSPI 346 Query: 218 VIVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPE 277 ++ + R +E +L + A + K I+E A + PA Sbjct: 347 FVMRLAKQSRHLEVQILADQYGNAISLFGRD--CSVQRRHQKIIEEAPAAIATPA----- 399 Query: 278 INDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGL 337 + + + AV+ + +G V+ + + E+N + ++ L Sbjct: 400 VFEHMEQCAVKLARMVGYVSAGTVEYLYSQDGSFYFLELNPRLQVEH--PCTEMVADVNL 457 Query: 338 GYTDLITRLIELALERHAADNAL 360 L I + + + + Sbjct: 458 PAAQL---QIAMGIPLYRIKDIR 477 >sp|P11029|COAC_CHICK ACETYL-COA CARBOXYLASE (ACC) [INCLUDES: BIOTIN CARBOXYLASE ] pir||A29924 acetyl-CoA carboxylase (EC 6.4.1.2), hepatic - chicken gb|AAA48701.1| (J03541) acetyl-CoA carboxylase [Gallus gallus] Length = 2324 Score = 204 bits (519), Expect = 1e-51 Identities = 50/383 (13%), Positives = 119/383 (31%), Gaps = 49/383 (12%) Query: 10 FGGKSAEHEVSLQS----AKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 FGG +V + + A + +I + ++ + ++ ++ V L + Sbjct: 112 FGGNRVIEKVLIANNGIAAVKCMRSIRRWSYE--MFRNERAIRFVVMVTPEDLKANAE-- 167 Query: 66 HIALRPSATSLAQVPGKHEH-QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 +I + + P + + + + V ++ G E+ L +L Sbjct: 168 YIKMADHYVPVPGGPNNNNYANVELILDIAKRIPVQAVWAG-WGHASENPKLPELLHKNG 226 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPF-ITLTRANRHNISFAE---------- 173 + F+G A A DK + + + AG+ P+ + R + + Sbjct: 227 IAFMGPPSQAMWALGDKIASSIVAQTAGIPTLPWNGSGLRVDWQENDLQKRILNVPQELY 286 Query: 174 -------------VESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV---DLAFEFDHK 217 ++G P+ +K + G G+ KV + + + Sbjct: 287 EKGYVKDADDGLRAAEEVGYPVMIKASEGGGGKGIRKVNNADDFPNLFRQVQAEVPGSPI 346 Query: 218 VIVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPE 277 ++ + R +E +L + A + K I+E A + Sbjct: 347 FVMRLAKQSRHLEVQILADQYGNAISLFGRD--CSVQRRHQKIIEEAPASIATSV----- 399 Query: 278 INDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGL 337 + + + AV+ + +G V+ + + E+N + ++ L Sbjct: 400 VFEHMEQCAVKLAKMVGYVSAGTVEYLYSQDGSFYFLELNPRLQVEH--PCTEMVADVNL 457 Query: 338 GYTDLITRLIELALERHAADNAL 360 L I + + H + Sbjct: 458 PAAQL---QIAMGIPLHRIKDIR 477 >ref|NP_404198.1| (NC_003143) D-alanine--D-alanine ligase B [Yersinia pestis] emb|CAC89413.1| (AJ414143) D-alanine--D-alanine ligase B [Yersinia pestis] Length = 306 Score = 204 bits (519), Expect = 1e-51 Identities = 105/346 (30%), Positives = 162/346 (46%), Gaps = 50/346 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 +V ++ GG SAE EVSL S + ++ + ++ D + Sbjct: 4 KVAVLLGGTSAEREVSLLSGQAVLAGLKEAGIDAYGVD---------------------- 41 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 D +F +HG GEDG+LQG+L Sbjct: 42 ---------------------TKDFPVTQLKEQGFDKVFIALHGRGGEDGTLQGVLEFLQ 80 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR---HNISFAEVESKLGLP 181 LP+ GS V+ASA MDK TK + + GL I+P++ L R +KLGLP Sbjct: 81 LPYTGSGVMASALTMDKLRTKLVWQALGLPISPYVALNRQQFETLSPEELVACVAKLGLP 140 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 L VKP+++GSSVG+SKV + A+ AF+ D V++E+ + G E A+LG++ Sbjct: 141 LIVKPSHEGSSVGMSKVDHASELQKALVEAFQHDSDVLIEKWLSGPEFTVAILGDE---V 197 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 I FY YD KY+ D + P+ ++ E ++ A+A+QAY L C+G RV Sbjct: 198 LPSIRIQPPGVFYDYDAKYL-SDKTQYFCPSGLSDESEQQLAALALQAYHALDCSGWGRV 256 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 DV + + E+NT PG T+ S+ P + GL ++ L+ R++ Sbjct: 257 DVMQDRDGHFYLLEVNTSPGMTSHSLVPMAARQYGLSFSQLVARIL 302 >gb|AAB40890.1| (U35023) acyl coenzyme A carboxylase [Corynebacterium glutamicum] Length = 591 Score = 204 bits (519), Expect = 1e-51 Identities = 49/332 (14%), Positives = 107/332 (31%), Gaps = 22/332 (6%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSL-AQVPGKH 83 + I + +R ++ + + + Y D ++ A +L Q + Sbjct: 6 RKITKVLVANRGEIAIRVFRAARDEGIGSVAVYAEPDADAPFVSYADEAFALGGQTSAES 65 Query: 84 EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + + D I P +G L E+ + L ++G + + DK Sbjct: 66 YLVIDKIIDAARKSGADAIHPG-YGFLAENADFAEAVINEGLIWIGPSPESIRSLGDKVT 124 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 + + A +AP + + GLP+ +K A G G+ E+ Sbjct: 125 ARHIADTAKAPMAPGTKEPVKDAAE--VVAFAEEFGLPIAIKAAFGGGGRGMKVAYKMEE 182 Query: 204 YAIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 A + A + VE+ + R +E V+ + + G Sbjct: 183 VADLFESATREATAAFGRGECFVERYLDKARHVEAQVIADKHGNVVVAGTRD--CSLQRR 240 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEI 316 K ++E + + +++ + A + G G V+ + + + E+ Sbjct: 241 FQKLVEE-----APAPFLTDDQRERLHSSAKAICKEAGYYGAGTVEYLVGSDGLISFLEV 295 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 NT + P + +G+ + R+ E Sbjct: 296 NTRLQVEH----PVTEETTGIDLVREMFRIAE 323 >pdb|1IOW| Complex Of Y216f D-Ala:d-Ala Ligase With Adp And A Phosphoryl Phosphinate Length = 306 Score = 204 bits (519), Expect = 1e-51 Identities = 103/347 (29%), Positives = 167/347 (47%), Gaps = 50/347 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 ++ ++ GG SAE EVSL S ++ + + D + Sbjct: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDP--------------KEVDVTQ 49 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 +F +HG GEDG+LQGML + Sbjct: 50 L-----------------------------KSMGFQKVFIALHGRGGEDGTLQGMLELMG 80 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL---GLP 181 LP+ GS V+ASA MDK +K L + AGL +AP++ LTRA + +++ GLP Sbjct: 81 LPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLP 140 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 + VKP+ +GSSVG+SKV +E A+ LAF+ D +V++E+ + G E A+LG + Sbjct: 141 VIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE---I 197 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 I + FY Y+ K++ D + PA + ++A+ ++A+ TLGC G R+ Sbjct: 198 LPSIRIQPSGTFYDYEAKFL-SDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRI 256 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 DV L + + + E NT PG T+ S+ P + +G+ ++ L+ R++E Sbjct: 257 DVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 >pir||S41121 acetyl-CoA carboxylase (EC 6.4.1.2) - human emb|CAA48770.1| (X68968) acetyl-CoA carboxylase [Homo sapiens] prf||2006242A Ac-CoA carboxylase [Homo sapiens] Length = 2339 Score = 204 bits (518), Expect = 1e-51 Identities = 52/383 (13%), Positives = 122/383 (31%), Gaps = 49/383 (12%) Query: 10 FGGKSAEHEVSLQS----AKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 FGG +V + + A + +I + ++ + ++ ++ V L + Sbjct: 112 FGGNKVIEKVLIANNGIAAVKCMRSIRRWSYE--MFRNERAIRFVVMVTPEDLKANAE-- 167 Query: 66 HIALRPSATSLAQVPGKHEH-QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 +I + + P + + + + V ++ G E+ L +L Sbjct: 168 YIKMADHYVPVPGGPNNNNYANVELILDIAKRIPVQAVWAG-WGHASENPKLPELLLKNG 226 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFI-TLTRANRHNISF------------ 171 + F+G A A DK + + + AG+ P+ + R + F Sbjct: 227 IAFMGPPSQAMWALGDKIASSIVAQTAGIPTLPWSGSGLRVDWQENDFSKRILNVPQELY 286 Query: 172 -----------AEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV---DLAFEFDHK 217 + ++G P+ +K + G G+ KV + + + Sbjct: 287 EKGYVKDVDDGLQAAEEVGYPVMIKASEGGGGKGIRKVNNADDFPNLFRQVQAEVPGSPI 346 Query: 218 VIVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPE 277 ++ + R +E +L + A + K I+E A + PA Sbjct: 347 FVMRLAKQSRHLEVQILADQYGNAISLFGRD--CSVQRRHQKIIEEAPATIATPA----- 399 Query: 278 INDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGL 337 + + + AV+ + +G V+ + + E+N + ++ L Sbjct: 400 VFEHMEQCAVKLAKMVGYVSAGTVEYLYSQDRSFYFLELNPRLQVEH--PCTEMVADVNL 457 Query: 338 GYTDLITRLIELALERHAADNAL 360 L I + + + + Sbjct: 458 PAAQL---QIAMGIPLYRIKDIR 477 >ref|NP_454677.1| (NC_003198) carbamoyl-phosphate synthase large chain [Salmonella enterica subsp. enterica serovar Typhi] emb|CAD01221.1| (AL627265) carbamoyl-phosphate synthase large chain [Salmonella enterica subsp. enterica serovar Typhi] Length = 1075 Score = 203 bits (517), Expect = 2e-51 Identities = 53/356 (14%), Positives = 118/356 (32%), Gaps = 52/356 (14%) Query: 2 EKLRVGIVFGGKSA-----EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 ++ ++ ++ GG + E + A A+ + ++ +++ + + D S Sbjct: 558 DRDKIMVLGGGPNRIGQGIEFDYCCVHA---SLALREDGYETIMVNCNPETVSTDYDTS- 613 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L V + +I GQ + Sbjct: 614 ------DRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKL----------------- 650 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L A +P +G+ A D++ + + L T+T + Sbjct: 651 ARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVE----KAK 706 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLA--FEFDHKVIVEQGI-KGREIECAV 233 ++G PL V+P+ + V E A D V++++ + E++ Sbjct: 707 EIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDA 766 Query: 234 LGNDNPQ-ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + + E + + ++ D A + ++ EI D +R + Sbjct: 767 ICDGEMVLIGGIMEHIEQAGVHS-------GDSACSLPAYTLSQEIQDVMRQQVQKLAFE 819 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 L G+ V + +NEV + E+N T P + +A+G+ + R++ Sbjct: 820 LQVRGLMNVQFAV-KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAARVMA 870 Score = 159 bits (401), Expect = 5e-38 Identities = 43/357 (12%), Positives = 110/357 (30%), Gaps = 52/357 (14%) Query: 4 LRVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYL 58 + I+ G++ E + S A+ + + V+L+ + Sbjct: 8 KSILILGAGPIVIGQACEFDYS---GAQACKALREEGYRVILVNSNPATIMTD------- 57 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL-- 116 + + + D + P + G + +L Sbjct: 58 --------PEMADATY-------IEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALEL 102 Query: 117 --QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 QG+L + +G+ A D+ ++ GL+ A V Sbjct: 103 ERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGIAHTMEEAL----AV 158 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKG-REIEC 231 + +G P ++P+ G + E++ + + ++++++ + G +E E Sbjct: 159 AADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDESLIGWKEYEM 218 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 V+ + N I + + D V + + +R ++ + Sbjct: 219 EVVRDKNDNCIIVCSIEN----FDAMGIHT-GDSITVAPAQTLTDKEYQIMRNASMAVLR 273 Query: 292 TLGC-AGMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 +G G + V + +++ E+N ++ +A+G + +L Sbjct: 274 EIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSA----LASKATGFPIAKVAAKL 326 >sp|P14846|CARB_SALTY CARBAMOYL-PHOSPHATE SYNTHASE LARGE CHAIN (CARBAMOYL-PHOSPHATE SYNTHETASE AMMONIA CHAIN) gb|AAB39256.1| (U81260) carbamoylphosphate synthetase large subunit [Salmonella typhimurium] Length = 1075 Score = 203 bits (517), Expect = 2e-51 Identities = 53/356 (14%), Positives = 118/356 (32%), Gaps = 52/356 (14%) Query: 2 EKLRVGIVFGGKSA-----EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 ++ ++ ++ GG + E + A A+ + ++ +++ + + D S Sbjct: 558 DRDKIMVLGGGPNRIGQGIEFDYCCVHA---SLALREDGYETIMVNCNPETVSTDYDTS- 613 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L V + +I GQ + Sbjct: 614 ------DRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKL----------------- 650 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L A +P +G+ A D++ + + L T+T + Sbjct: 651 ARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVE----KAK 706 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLA--FEFDHKVIVEQGI-KGREIECAV 233 ++G PL V+P+ + V E A D V++++ + E++ Sbjct: 707 EIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDA 766 Query: 234 LGNDNPQ-ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + + E + + ++ D A + ++ EI D +R + Sbjct: 767 ICDGEMVLIGGIMEHIEQAGVHS-------GDSACSLPAYTLSQEIQDVMRQQVQKLAFE 819 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 L G+ V + +NEV + E+N T P + +A+G+ + R++ Sbjct: 820 LQVRGLMNVQFAV-KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAARVMA 870 Score = 155 bits (392), Expect = 6e-37 Identities = 43/357 (12%), Positives = 110/357 (30%), Gaps = 52/357 (14%) Query: 4 LRVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYL 58 + I+ G++ E + S A+ + + V+L+ + Sbjct: 8 KSILILGAGPIVIGQACEFDYS---GAQACKALREEGYRVILVNSNPATIMTD------- 57 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL-- 116 + + + D + P + G + +L Sbjct: 58 --------PEMADATY-------IEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALEL 102 Query: 117 --QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 QG+L + +G+ A D+ ++ GL+ A V Sbjct: 103 ERQGVLEEFGVTMIGATADAGDKAEDRRRFDIAMKKIGLDTARSGIAHTMEEAL----AV 158 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKG-REIEC 231 + +G P ++P+ G + E++ + + ++++++ + G +E E Sbjct: 159 AADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDESLIGWKEYEM 218 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 V+ + N I + + D V + + +R ++ + Sbjct: 219 EVVRDKNDNCIIVCSIEN----FDAMGIHT-GDSITVAPAQTLTDKEYQIMRNASMAVLR 273 Query: 292 TLGC-AGMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 +G G + V + +++ E+N ++ +A+G + +L Sbjct: 274 EIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSA----LASKATGFPIAKVAAKL 326 >ref|NP_459072.1| (NC_003197) carbamoyl-phosphate synthase, large subunit [Salmonella typhimurium LT2] gb|AAL19031.1| (AE008696) carbamoyl-phosphate synthase, large subunit [Salmonella typhimurium LT2] Length = 1075 Score = 203 bits (517), Expect = 2e-51 Identities = 53/356 (14%), Positives = 118/356 (32%), Gaps = 52/356 (14%) Query: 2 EKLRVGIVFGGKSA-----EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 ++ ++ ++ GG + E + A A+ + ++ +++ + + D S Sbjct: 558 DRDKIMVLGGGPNRIGQGIEFDYCCVHA---SLALREDGYETIMVNCNPETVSTDYDTS- 613 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L V + +I GQ + Sbjct: 614 ------DRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKL----------------- 650 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L A +P +G+ A D++ + + L T+T + Sbjct: 651 ARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVE----KAK 706 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLA--FEFDHKVIVEQGI-KGREIECAV 233 ++G PL V+P+ + V E A D V++++ + E++ Sbjct: 707 EIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDA 766 Query: 234 LGNDNPQ-ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + + E + + ++ D A + ++ EI D +R + Sbjct: 767 ICDGEMVLIGGIMEHIEQAGVHS-------GDSACSLPAYTLSQEIQDVMRQQVQKLAFE 819 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 L G+ V + +NEV + E+N T P + +A+G+ + R++ Sbjct: 820 LQVRGLMNVQFAV-KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAARVMA 870 Score = 158 bits (400), Expect = 6e-38 Identities = 43/357 (12%), Positives = 110/357 (30%), Gaps = 52/357 (14%) Query: 4 LRVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYL 58 + I+ G++ E + S A+ + + V+L+ + Sbjct: 8 KSILILGAGPIVIGQACEFDYS---GAQACKALREEGYRVILVNSNPATIMTD------- 57 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL-- 116 + + + D + P + G + +L Sbjct: 58 --------PEMADATY-------IEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALEL 102 Query: 117 --QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 QG+L + +G+ A D+ ++ GL+ A V Sbjct: 103 ERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGIAHTMEEAL----AV 158 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKG-REIEC 231 + +G P ++P+ G + E++ + + ++++++ + G +E E Sbjct: 159 AADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDESLIGWKEYEM 218 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 V+ + N I + + D V + + +R ++ + Sbjct: 219 EVVRDKNDNCIIVCSIEN----FDAMGIHT-GDSITVAPAQTLTDKEYQIMRNASMAVLR 273 Query: 292 TLGC-AGMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 +G G + V + +++ E+N ++ +A+G + +L Sbjct: 274 EIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSA----LASKATGFPIAKVAAKL 326 >pir||T42206 probable acyl-CoA carboxylase complex A chain - Streptomyces coelicolor gb|AAD28554.1|AF113604_1 (AF113604) putative acyl-CoA carboxylase complex A subunit [Streptomyces coelicolor A3(2)] Length = 590 Score = 203 bits (516), Expect = 2e-51 Identities = 46/326 (14%), Positives = 100/326 (30%), Gaps = 22/326 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ-VPGKHEHQL 87 + +R ++ + ++ + Y D H+ A +L P + Sbjct: 3 KVLIANRGEIAVRVARACRDAGIASVAVYADPDRDALHVRAADEAFALGGDTPATSYLDI 62 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 D I P +G L E+ + A L ++G A +K + + Sbjct: 63 AKVLKAARESGADAIHPG-YGFLSENADFAQAVLDAGLIWIGPPPHAIRDRGEKVAARHI 121 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + AG + + GLP+ +K A G G+ + E+ Sbjct: 122 AQRAGAPLVAGT--PDPVSGADEVVAFAKEHGLPIAIKAAFGGGGRGLKVARTLEEVPEL 179 Query: 208 VDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 D A + VE+ + R +E L + + K Sbjct: 180 YDSAVREAVAAFGRGECFVERYLDKPRHVETQCLADTHGNVVVVSTRD--CSLQRRHQKL 237 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E ++ +++ + + + G G V+ + + + E+NT Sbjct: 238 VEE-----APAPFLSEAQTEQLYSSSKAILKEAGYVGAGTVEFLVGMDGTISFLEVNTRL 292 Query: 321 GFTNISMYPKLWQASGLGYTDLITRL 346 + P + +G+ + R+ Sbjct: 293 QVEH----PVTEEVAGIDLVREMFRI 314 >pir||T42202 probable acyl-CoA carboxylase complex A chain - Streptomyces coelicolor gb|AAD28553.1|AF113603_1 (AF113603) putative acyl-CoA carboxylase complex A subunit [Streptomyces coelicolor A3(2)] Length = 590 Score = 202 bits (515), Expect = 3e-51 Identities = 46/326 (14%), Positives = 100/326 (30%), Gaps = 22/326 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ-VPGKHEHQL 87 + +R ++ + ++ + Y D H+ A +L P + Sbjct: 3 KVLIANRGEIAVRVARACRDAGIASVAVYADPDRDALHVRAADEAFALGGDTPATSYLDI 62 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 D I P +G L E+ + A L ++G A +K + + Sbjct: 63 AKVLKAARESGADAIHPG-YGFLSENAEFAQAVLDAGLIWIGPPPHAIRDRGEKVAARHI 121 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + AG + + GLP+ +K A G G+ + E+ Sbjct: 122 AQRAGAPLVAGT--PDPVSGADEVVAFAKEHGLPIAIKAAFGGGGRGLKVARTLEEVPEL 179 Query: 208 VDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 D A + VE+ + R +E L + + K Sbjct: 180 YDSAVREAVAAFGRGECFVERYLDKPRHVETQCLADTHGNVVVVSTRD--CSLQRRHQKL 237 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E ++ +++ + + + G G V+ + + + E+NT Sbjct: 238 VEE-----APAPFLSEAQTEQLYSSSKAILKEAGYGGAGTVEFLVGMDGTIFFLEVNTRL 292 Query: 321 GFTNISMYPKLWQASGLGYTDLITRL 346 + P + +G+ + R+ Sbjct: 293 QVEH----PVTEEVAGIDLVREMFRI 314 >ref|NP_269768.1| (NC_002737) putative acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus pyogenes] [Streptococcus pyogenes M1 GAS] gb|AAK34489.1| (AE006603) putative acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus pyogenes M1 GAS] Length = 454 Score = 202 bits (515), Expect = 3e-51 Identities = 57/346 (16%), Positives = 114/346 (32%), Gaps = 23/346 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 + +R ++ + I + +S + Y + H L A + + Sbjct: 1 MFKKILIANRGEIAVRIIRAARELGISTVAVYSEADKEALHTILADEAICIGPARSKESY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + I P G L E+ M N+ F+G DK Sbjct: 61 LNMNSVLSAAIVTGAQAIHPGF-GFLSENSKFATMCEEMNIKFIGPSASVMDKMGDKINA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + + AG+ + P N + +K+G P+ +K + G G+ KV +E Sbjct: 120 RSEMIKAGVPVIPGSDGEVYNAQE--ALAIANKIGYPVMLKASAGGGGKGIRKVETEADL 177 Query: 205 AIAVDLA------FEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A + A + + +E+ I R IE +LG+ GE + Sbjct: 178 EAAFNAASQEALGAFGNGAMYLEKVIYPARHIEVQILGDAYGNIIHLGERD--CSLQRNN 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENE-VVINEI 316 K ++E AI + ++ AV+A + + ++ L ++E E+ Sbjct: 236 QKVLEES-----PSIAIGNTLRHEMGQAAVRAAEAVAYENAGTIEFLLDEDSEKFYFMEM 290 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALKT 362 NT + P +G+ ++ ++ T Sbjct: 291 NTRIQVEH----PVTEFVTGVDIVKEQIKIAAGQPLAINQEDITIT 332 >sp|P78992|PYC_PICPA PYRUVATE CARBOXYLASE (PYRUVIC CARBOXYLASE) (PCB) emb|CAA71993.1| (Y11106) pyruvate carboxylase [Pichia pastoris] Length = 1189 Score = 202 bits (515), Expect = 3e-51 Identities = 49/335 (14%), Positives = 99/335 (28%), Gaps = 27/335 (8%) Query: 17 HEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSL 76 + SL N + +R ++ + + ++ + Y H A + Sbjct: 14 RDSSLLGTMN--KILVANRGEIPIRIFRTAHELSMNTVAIYSHEDRLSMHRLKADEAYVI 71 Query: 77 AQ----VPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDV 132 + P + + + V++I P +G E+ + + +VG Sbjct: 72 GERGQYSPVQAYLAIDEIIKIAVKHNVNMIHPG-YGFCSENSEFARKVEENGILWVGPSD 130 Query: 133 LASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSS 192 A DK + L A + P + + G P+ +K A G Sbjct: 131 TVIDAVGDKVSARNLAYAANVPTVPGTPGPIEDVAQ--ATAFVEEYGYPVIIKAAFGGGG 188 Query: 193 VGVSKVTSEEQYAIAVDLA------FEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCG 245 G+ V + A A + V +E+ + + IE +L ++ Sbjct: 189 RGMRVVREGDDIEDAFLRASSEAKTAFGNGTVFIERFLDKPKHIEVQLLADNYGNVIHLF 248 Query: 246 EIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFL 305 E K AK + E+ + I AV+ +T + + Sbjct: 249 ERD--CSVQRRHQKVARNCSAK-----TLPVEVRNAILNDAVKLAKTANYRNAGTAEFLV 301 Query: 306 TPENEVVINEINTLPGFTNISMYPKLWQASGLGYT 340 +N EIN + + +G+ Sbjct: 302 DSQNRHYFIEINPRIQVEHT----ITEEITGVDIV 332 >gb|AAF16526.1|AF191301_2 (AF191301) ADP-forming, carbamate-phosphorylating [Medicago sativa] Length = 1072 Score = 202 bits (515), Expect = 4e-51 Identities = 49/354 (13%), Positives = 118/354 (32%), Gaps = 52/354 (14%) Query: 2 EKLRVGIVFGGKSA-----EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 +K ++ ++ GG + E + A A+ + ++ +++ + + D S Sbjct: 557 DKKKILVIGGGPNRIGQGIEFDYCCVHA---ALAMREDGYETIMVNCNPETVSTDYDTS- 612 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D L V + +I GQ + Sbjct: 613 ------DRLFFEPVTLEDVLEIVHKEKPVGVIVQFGGQTPLKL----------------- 649 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L +P +G+ A D++ ++++ GL P + ++ Sbjct: 650 ARALEAEGVPIIGTSPDAIDKAEDRERFQQMINKLGLLQPPNAIVRSLEEALLA----AD 705 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEF--DHKVIVEQGI-KGREIECAV 233 K+G PL V+P+ + V E++ + A + D V+++ + E++ Sbjct: 706 KVGYPLVVRPSYVLGGRAMEIVYKEDELRTYMRTAVQVSEDAPVLLDHFLNNAIEVDIDS 765 Query: 234 LGNDNPQAS-TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + + + + ++ D A + P ++ ++ D +R I + Sbjct: 766 VSDGKQVVIGGIMQHIEQCGVHS-------GDSACSLPPYSLPADVQDDMREIVKKMAIE 818 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 LG G+ + + ++ + E+N T P + + G+ + R Sbjct: 819 LGVIGLMNTQLAY-QDGKIYVIEVNPRASRT----VPFVSKCIGVSLAKVAARC 867 Score = 156 bits (394), Expect = 3e-37 Identities = 46/369 (12%), Positives = 117/369 (31%), Gaps = 57/369 (15%) Query: 6 VGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 + I+ G++ E + S A+ + + V+L+ + Sbjct: 10 ILILGAGPIVIGQACEFDYS---GAQACKALREEGYRVILVNSNPATIMTD--------- 57 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ--- 117 A+ + + DVI P + G + +L Sbjct: 58 ------PAMADATY-------IEPIEWQTVAKIIEKERPDVILPTMGGQTALNCALALAK 104 Query: 118 -GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 G+L N+ +G+ A D+++ + ++ GL+ A + + Sbjct: 105 NGVLEKYNVELIGAKEEAINMAEDRNLFDQAMKRIGLSCARAKIVHTLEEAKEA----PK 160 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKG-REIECAV 233 + G P ++P+ G + +++ + ++++++ + G +E E V Sbjct: 161 EFGFPCIIRPSFTMGGSGGGIAYNWDEFEEICTRGLDLSPTNELLIDESLLGWKEYEMEV 220 Query: 234 LGNDNPQASTC--GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 + + N E + D V + + +R ++ + Sbjct: 221 VRDKNDNCIIVCSIENFDPMGVHT-------GDSITVAPAQTLTDKEYQIMRNASIAVLR 273 Query: 292 TLGC-AGMARVDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 +G G + V + P + +V+ E+N ++ +A+G + + + + Sbjct: 274 EIGVETGGSNVQFAVNPVDGRMVVIEMNPRVSRSSA----LASKATGFPIAKIAAK-LAV 328 Query: 350 ALERHAADN 358 N Sbjct: 329 GYTLDELKN 337 >emb|CAC84688.1| (AJ306726) D-Ala:D-Lac ligase [Enterococcus faecium] Length = 289 Score = 202 bits (515), Expect = 4e-51 Identities = 101/305 (33%), Positives = 162/305 (53%), Gaps = 21/305 (6%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I ID +FD +GI K G W + Sbjct: 1 MNRIKVAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNG-QPLPTVDVIFPIVHGTLGEDGSLQGM 119 AD + P + H L+ + +DV FP++HG GEDG++QG+ Sbjct: 61 AD----------SLPAILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGL 110 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +P+VG D+ +SAAC+DK + L ++AG+ + F + + ++ L Sbjct: 111 FVLSGIPYVGCDIQSSAACVDKSLAYILTKNAGIAVPEFQMIDKGDKPE------AGALT 164 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GV+KV E+ A++ A ++D K+++EQ I G E+ CAV+GN+ + Sbjct: 165 YPVFVKPARSGSSFGVTKVNGTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDD 224 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDG---AKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L+ + + E G A + VPA I E +++ A + Y+ LGC Sbjct: 225 LIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERKRVQETAKKVYRVLGC 284 Query: 296 AGMAR 300 G+AR Sbjct: 285 RGLAR 289 >gb|AAG30191.1| (AF293442) biotin carboxylase [Streptomyces sp. R1128] Length = 461 Score = 202 bits (514), Expect = 4e-51 Identities = 53/343 (15%), Positives = 106/343 (30%), Gaps = 23/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 + +R ++ L + + + A + A + P + + Sbjct: 1 MFEKVLIANRGEIALRVAATCRELGIRTVVVHSDADRHSAAVRFADEAVCVGPAPPRASY 60 Query: 86 -QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 V+ + P +G L ED + +G + +K Sbjct: 61 LNAAAVLQAAVQTGVEAVHPG-YGFLSEDPDFAEACEDEGITLIGPPAEVMSRLGNKASA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + ++ AGL + P ++R + +G P+ VK A G G+S V S + + Sbjct: 120 RSIMSQAGLPLLPGSLDPLSDR---EAHALADTIGYPVIVKAAAGGGGRGMSVVHSSDDF 176 Query: 205 A------IAVDLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A LA D +V VE+ + + R +E VL + GE Sbjct: 177 PDTFRRTQATALAVFGDGRVYVERYLPEARHVEIQVLADRYGNVVHLGERD--CSVQRRH 234 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E + + ++ AV + +G G + L P+ E+N Sbjct: 235 QKLVEE-----TPGPRLPDGLAARMGEAAVAGARAVGYVGAGTFEFLLAPDGTFSFMEVN 289 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + P +G+ + ++ Sbjct: 290 CRIQVEH----PVTEMVTGIDLVREQILVAAGRPLTVRQEDIR 328 >ref|NP_519642.1| (NC_003295) PROBABLE CARBAMOYL-PHOSPHATE SYNTHASE (LARGE CHAIN) PROTEIN [Ralstonia solanacearum] emb|CAD15223.1| (AL646065) PROBABLE CARBAMOYL-PHOSPHATE SYNTHASE (LARGE CHAIN) PROTEIN [Ralstonia solanacearum] Length = 1081 Score = 201 bits (512), Expect = 7e-51 Identities = 53/361 (14%), Positives = 120/361 (32%), Gaps = 54/361 (14%) Query: 2 EKLRVGIVFGGKSA-----EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 E+ ++ ++ GG + E + A A+ + ++ +++ + + D S Sbjct: 562 ERKKIMVLGGGPNRIGQGIEFDYCCVHA---ALALREDGYETIMVNCNPETVSTDYDTS- 617 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L V + +I GQ + + Sbjct: 618 ------DRLYFEPVTLEDVLEIVDKEKPVGVIVQYGGQTPLKLALD-------------- 657 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L +P +G+ A D++ ++LL D GL P T ++ Sbjct: 658 ---LEANGVPIIGTTPDMIDAAEDRERFQKLLHDLGLRQPPNRTAR----AEDEALKLAD 710 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFE--FDHKVIVEQGI-KGREIECAV 233 ++G PL V+P+ + V + A + D V++++ + E + Sbjct: 711 EIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDC 770 Query: 234 LGND-NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 L + E + + ++ D A + P +++ D+++ + Sbjct: 771 LSDGKRVFIGGVMEHIEQAGVHS-------GDSACSLPPYSLSQATVDELKRQTAAMARA 823 Query: 293 LGCAGMARVDVFLTPENE---VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 L G+ V + + V + E+N T P + +A+G+ + R + Sbjct: 824 LNVIGLMNVQFAIQQKGGEDIVYVLEVNPRASRT----VPYVSKATGISLAKVAARCMAG 879 Query: 350 A 350 Sbjct: 880 Q 880 Score = 145 bits (365), Expect = 7e-34 Identities = 47/374 (12%), Positives = 110/374 (28%), Gaps = 56/374 (14%) Query: 4 LR-----VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYL 58 G + G++ E + S A+ + F VVL+ + ++ Sbjct: 8 KTILIIGAGPIIIGQACEFDYS---GAQACKALREEGFKVVLVNSNPATIMTDPSTADVT 64 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ- 117 + D I P + G + +L Sbjct: 65 ----------------------YIEPITWEVVERIIAKERPDAILPTMGGQTALNCALDL 102 Query: 118 ---GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 G+L N+ +G+ A D+ K + GL A A++ Sbjct: 103 HRHGVLEKYNVELIGASPEAIDKAEDRQKFKEAMTKIGLGSAKSGIAHSLEEALAVQAQI 162 Query: 175 ESKL---GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKG-RE 228 + G P+ ++P+ G + E++ + ++++E+ + G +E Sbjct: 163 ARETSSGGYPIVIRPSFTLGGTGGGIAYNREEFEDICKRGLDLSPTNELLIEESLLGWKE 222 Query: 229 IECAVLGNDNPQASTC--GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIA 286 E V+ + E + + D V + + +R + Sbjct: 223 YEMEVVRDKKDNCIIVCSIENLDPMGIHT-------GDSITVAPAQTLTDKEYQILRNAS 275 Query: 287 VQAYQTLGC-AGMARVDV-FLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLIT 344 + + +G G + V + +++ E+N ++ +A+G + Sbjct: 276 LAVLREIGVDTGGSNVQFSINPEDGRMIVIEMNPRVSRSSA----LASKATGFPIAKVAA 331 Query: 345 RLIELALERHAADN 358 + + + N Sbjct: 332 K-LAVGYTLDELKN 344 >pdb|1CE8|A Chain A, Carbamoyl Phosphate Synthetase From Escherichis Coli With Complexed With The Allosteric Ligand Imp pdb|1CE8|C Chain C, Carbamoyl Phosphate Synthetase From Escherichis Coli With Complexed With The Allosteric Ligand Imp pdb|1CE8|E Chain E, Carbamoyl Phosphate Synthetase From Escherichis Coli With Complexed With The Allosteric Ligand Imp pdb|1CE8|G Chain G, Carbamoyl Phosphate Synthetase From Escherichis Coli With Complexed With The Allosteric Ligand Imp Length = 1073 Score = 201 bits (511), Expect = 9e-51 Identities = 54/356 (15%), Positives = 116/356 (32%), Gaps = 52/356 (14%) Query: 2 EKLRVGIVFGGKSA-----EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 ++ ++ ++ GG + E + A A+ + ++ +++ + + D S Sbjct: 558 DREKIMVLGGGPNRIGQGIEFDYCCVHA---SLALREDGYETIMVNCNPETVSTDYDTS- 613 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L V + +I GQ + Sbjct: 614 ------DRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKL----------------- 650 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L A +P +G+ A D++ + + L T+T E Sbjct: 651 ARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVT----AIEMAVEKAK 706 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLA--FEFDHKVIVEQGI-KGREIECAV 233 ++G PL V+P+ + V E A D V+++ + E++ Sbjct: 707 EIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDA 766 Query: 234 LGNDNPQ-ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + + E + + ++ D A + ++ EI D +R + Sbjct: 767 ICDGEMVLIGGIMEHIEQAGVHS-------GDSACSLPAYTLSQEIQDVMRQQVQKLAFE 819 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 L G+ V + NEV + E+N T P + +A+G+ + R++ Sbjct: 820 LQVRGLMNVQFAV-KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAARVMA 870 Score = 154 bits (388), Expect = 2e-36 Identities = 42/357 (11%), Positives = 107/357 (29%), Gaps = 52/357 (14%) Query: 4 LRVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYL 58 + I+ G++ E + S A+ + + V+ + + Sbjct: 8 KSILILGAGPIVIGQACEFDYS---GAQACKALREEGYRVINVNSNPATIMTD------- 57 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL-- 116 + + + D + P + G + +L Sbjct: 58 --------PEMADATY-------IEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALEL 102 Query: 117 --QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 QG+L + +G+ A D+ ++ GL A V Sbjct: 103 ERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEAL----AV 158 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKG-REIEC 231 + +G P ++P+ G + E++ + ++++++ + G +E E Sbjct: 159 AADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEM 218 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 V+ + N I + + D V + + +R ++ + Sbjct: 219 EVVRDKNDNCIIVCSIEN----FDAMGIHT-GDSITVAPAQTLTDKEYQIMRNASMAVLR 273 Query: 292 TLGC-AGMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 +G G + V + +++ E+N ++ +A+G + +L Sbjct: 274 EIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSA----LASKATGFPIAKVAAKL 326 >ref|NP_414574.1| (NC_000913) carbamoyl-phosphate synthase large subunit [Escherichia coli K12] sp|P00968|CARB_ECOLI CARBAMOYL-PHOSPHATE SYNTHASE LARGE CHAIN (CARBAMOYL-PHOSPHATE SYNTHETASE AMMONIA CHAIN) pir||SYECCP carbamoyl-phosphate synthase (glutamine-hydrolyzing) (EC 6.3.5.5) large chain [validated] - Escherichia coli pdb|1BXR|A Chain A, Structure Of Carbamoyl Phosphate Synthetase Complexed With The Atp Analog Amppnp pdb|1BXR|C Chain C, Structure Of Carbamoyl Phosphate Synthetase Complexed With The Atp Analog Amppnp pdb|1BXR|E Chain E, Structure Of Carbamoyl Phosphate Synthetase Complexed With The Atp Analog Amppnp pdb|1BXR|G Chain G, Structure Of Carbamoyl Phosphate Synthetase Complexed With The Atp Analog Amppnp pdb|1JDB|K Chain K, Carbamoyl Phosphate Synthetase From Escherichia Coli pdb|1CS0|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase Complexed At Cys269 In The Small Subunit With The Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde pdb|1CS0|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase Complexed At Cys269 In The Small Subunit With The Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde pdb|1CS0|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase Complexed At Cys269 In The Small Subunit With The Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde pdb|1CS0|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase Complexed At Cys269 In The Small Subunit With The Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde pdb|1C30|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269s pdb|1C30|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269s pdb|1C30|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269s pdb|1C30|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269s pdb|1C3O|A Chain A, Crystal Structure Of The Carbamoyl Phosphate Synthetase: Small Subunit Mutant C269s With Bound Glutamine pdb|1C3O|C Chain C, Crystal Structure Of The Carbamoyl Phosphate Synthetase: Small Subunit Mutant C269s With Bound Glutamine pdb|1C3O|E Chain E, Crystal Structure Of The Carbamoyl Phosphate Synthetase: Small Subunit Mutant C269s With Bound Glutamine pdb|1C3O|G Chain G, Crystal Structure Of The Carbamoyl Phosphate Synthetase: Small Subunit Mutant C269s With Bound Glutamine pdb|1JDB|B Chain B, Carbamoyl Phosphate Synthetase From Escherichia Coli pdb|1JDB|E Chain E, Carbamoyl Phosphate Synthetase From Escherichia Coli pdb|1JDB|H Chain H, Carbamoyl Phosphate Synthetase From Escherichia Coli emb|CAA24744.1| (V01500) carB reading frame [Escherichia coli] gb|AAA23539.1| (J01597) carbamoyl-phosphate synthetase subunit B [Escherichia coli] dbj|BAA01311.1| (D10483) carbamoyl-phosphate synthase large chain [Escherichia coli] gb|AAC73144.1| (AE000113) carbamoyl-phosphate synthase large subunit [Escherichia coli K12] Length = 1073 Score = 201 bits (511), Expect = 9e-51 Identities = 54/356 (15%), Positives = 116/356 (32%), Gaps = 52/356 (14%) Query: 2 EKLRVGIVFGGKSA-----EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 ++ ++ ++ GG + E + A A+ + ++ +++ + + D S Sbjct: 558 DREKIMVLGGGPNRIGQGIEFDYCCVHA---SLALREDGYETIMVNCNPETVSTDYDTS- 613 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L V + +I GQ + Sbjct: 614 ------DRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKL----------------- 650 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L A +P +G+ A D++ + + L T+T E Sbjct: 651 ARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVT----AIEMAVEKAK 706 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLA--FEFDHKVIVEQGI-KGREIECAV 233 ++G PL V+P+ + V E A D V+++ + E++ Sbjct: 707 EIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDA 766 Query: 234 LGNDNPQ-ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + + E + + ++ D A + ++ EI D +R + Sbjct: 767 ICDGEMVLIGGIMEHIEQAGVHS-------GDSACSLPAYTLSQEIQDVMRQQVQKLAFE 819 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 L G+ V + NEV + E+N T P + +A+G+ + R++ Sbjct: 820 LQVRGLMNVQFAV-KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAARVMA 870 Score = 156 bits (394), Expect = 4e-37 Identities = 43/357 (12%), Positives = 108/357 (30%), Gaps = 52/357 (14%) Query: 4 LRVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYL 58 + I+ G++ E + S A+ + + V+L+ + Sbjct: 8 KSILILGAGPIVIGQACEFDYS---GAQACKALREEGYRVILVNSNPATIMTD------- 57 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL-- 116 + + + D + P + G + +L Sbjct: 58 --------PEMADATY-------IEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALEL 102 Query: 117 --QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 QG+L + +G+ A D+ ++ GL A V Sbjct: 103 ERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEAL----AV 158 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKG-REIEC 231 + +G P ++P+ G + E++ + ++++++ + G +E E Sbjct: 159 AADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEM 218 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 V+ + N I + + D V + + +R ++ + Sbjct: 219 EVVRDKNDNCIIVCSIEN----FDAMGIHT-GDSITVAPAQTLTDKEYQIMRNASMAVLR 273 Query: 292 TLGC-AGMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 +G G + V + +++ E+N ++ +A+G + +L Sbjct: 274 EIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSA----LASKATGFPIAKVAAKL 326 >ref|NP_285727.1| (NC_002655) carbamoyl-phosphate synthase large subunit [Escherichia coli O157:H7 EDL933] ref|NP_308063.1| (NC_002695) carbamoyl-phosphate synthase large subunit [Escherichia coli O157:H7] gb|AAG54335.1|AE005180_2 (AE005180) carbamoyl-phosphate synthase large subunit [Escherichia coli O157:H7 EDL933] dbj|BAB33459.1| (AP002550) carbamoyl-phosphate synthase large subunit [Escherichia coli O157:H7] Length = 1073 Score = 201 bits (510), Expect = 1e-50 Identities = 54/356 (15%), Positives = 116/356 (32%), Gaps = 52/356 (14%) Query: 2 EKLRVGIVFGGKSA-----EHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 ++ ++ ++ GG + E + A A+ + ++ +++ + + D S Sbjct: 558 DREKIMVLGGGPNRIGQGIEFDYCCVHA---SLALREDGYETIMVNCNPETVSTDYDTS- 613 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L V + +I GQ + Sbjct: 614 ------DRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKL----------------- 650 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L A +P +G+ A D++ + + L T+T E Sbjct: 651 ARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVT----AIEMAVEKAK 706 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLA--FEFDHKVIVEQGI-KGREIECAV 233 ++G PL V+P+ + V E A D V+++ + E++ Sbjct: 707 EIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDA 766 Query: 234 LGNDNPQ-ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + + E + + ++ D A + ++ EI D +R + Sbjct: 767 ICDGEMVLIGGIMEHIEQAGVHS-------GDSACSLPAYTLSQEIQDVMRQQVQKLAFE 819 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 L G+ V + NEV + E+N T P + +A+G+ + R++ Sbjct: 820 LQVRGLMNVQFAV-KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAARVMA 870 Score = 156 bits (394), Expect = 4e-37 Identities = 43/357 (12%), Positives = 108/357 (30%), Gaps = 52/357 (14%) Query: 4 LRVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYL 58 + I+ G++ E + S A+ + + V+L+ + Sbjct: 8 KSILILGAGPIVIGQACEFDYS---GAQACKALREEGYRVILVNSNPATIMTD------- 57 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL-- 116 + + + D + P + G + +L Sbjct: 58 --------PEMADATY-------IEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALEL 102 Query: 117 --QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 QG+L + +G+ A D+ ++ GL A V Sbjct: 103 ERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEAL----AV 158 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKG-REIEC 231 + +G P ++P+ G + E++ + ++++++ + G +E E Sbjct: 159 AADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEM 218 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 V+ + N I + + D V + + +R ++ + Sbjct: 219 EVVRDKNDNCIIVCSIEN----FDAMGIHT-GDSITVAPAQTLTDKEYQIMRNASMAVLR 273 Query: 292 TLGC-AGMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 +G G + V + +++ E+N ++ +A+G + +L Sbjct: 274 EIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSA----LASKATGFPIAKVAAKL 326 >ref|NP_232962.1| (NC_002506) D-alanine--D-alanine ligase [Vibrio cholerae] pir||A82443 D-alanine--D-alanine ligase VCA0572 [imported] - Vibrio cholerae (group O1 strain N16961) gb|AAF96474.1| (AE004388) D-alanine--D-alanine ligase [Vibrio cholerae] Length = 334 Score = 201 bits (510), Expect = 1e-50 Identities = 105/355 (29%), Positives = 175/355 (48%), Gaps = 29/355 (8%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKS-RFDVVLLGIDKQGQWHVSDASNYLL 59 M K + ++ GG S+EHE+SL SA I ++ + F V+ + + K+G + A YL Sbjct: 1 MTKTTILLLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLD 60 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 + +D + P +HG GE G +Q M Sbjct: 61 TNSATLNSDKAS-------------------------YPIDFVVPCIHGFPGETGDIQSM 95 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L +A +P++G ASA +K +K + P++ LT+ +I A+ Sbjct: 96 LELAGIPYLGCGPEASANSFNKITSKLWYDALDIPNTPYLFLTQNTPSSIDKAKQAFGHW 155 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL-GNDN 238 +FVK A QGSSVG KVT+E+Q A A++ AF F +V+VEQ +K RE+E + N Sbjct: 156 GSIFVKAARQGSSVGCYKVTTEDQIAPAIEAAFGFSEQVLVEQAVKPRELEVSAYEMNGK 215 Query: 239 PQASTCGEIVLTSD-FYAYDTKYIDEDGAKVVVPA-AIAPEINDKIRAIAVQAYQTLGCA 296 S GE++ FY+Y+ KY A+ V+ A + + + I+ A + + + Sbjct: 216 LYISKPGEVIAPEGTFYSYEEKYSANSHARTVLEAENLTEKHKELIQTYAERVFIHMKLR 275 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 ++R+D FLT E ++ +NE+NT PG T ISM+PK+ + +G +++ + + + L Sbjct: 276 HLSRIDFFLTQEGQIYLNEVNTFPGMTPISMFPKMLEHNGHRFSEFLVQCVTNTL 330 Searching..................................................done Results from round 6 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: ref|NP_454975.1| (NC_003198) D-alanine:D-alanine ligase A [Salmo... 293 2e-78 ref|NP_286119.1| (NC_002655) Z0477 gene product [Escherichia col... 292 3e-78 gb|AAB17902.2| (U39790) D-alanine:D-alanine ligase [Enterococcus... 275 4e-73 sp|Q47827|DDL_ENTHR D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 273 2e-72 gb|AAG49141.1|AF215736_1 (AF215736) D-alanine:D-alanine ligase [... 273 2e-72 gb|AAK67986.1|AF297332_1 (AF297332) 3-methylcrotonyl-CoA carboxy... 273 3e-72 ref|NP_064551.2| (NM_020166) methylcrotonoyl-Coenzyme A carboxyl... 273 3e-72 dbj|BAA99407.1| (AB029826) 3-methylcrotonyl-CoA carboxylase biot... 272 3e-72 ref|NP_372607.1| (NC_002758) D-alanine-D-alanine ligase [Staphyl... 264 1e-69 ref|NP_442228.1| (NC_000911) biotin carboxylase [Synechocystis s... 263 2e-69 ref|NP_388337.1| (NC_000964) D-alanyl-D-alanine ligase A [Bacill... 261 9e-69 gb|AAB88214.1| (U59234) biotin carboxylase [Synechococcus sp. PC... 259 2e-68 ref|NP_539980.1| (NC_003317) BIOTIN CARBOXYLASE [Brucella melite... 259 2e-68 ref|NP_266497.1| (NC_002662) D-alanine-D-alanine ligase (EC 6.3.... 256 3e-67 ref|NP_484982.1| (NC_003272) biotin carboxylase [Nostoc sp. PCC ... 256 3e-67 ref|NP_076133.1| (NM_023644) methylcrotonoyl-Coenzyme A carboxyl... 256 4e-67 emb|CAB64487.1| (AJ243059) D-ala,D-ala ligase [Streptococcus pne... 255 4e-67 dbj|BAB25253.1| (AK007782) putative [Mus musculus] 255 4e-67 emb|CAB64463.1| (AJ243053) D-ala,D-ala ligase [Streptococcus pne... 255 5e-67 ref|NP_346110.1| (NC_003028) D-alanine--D-alanine ligase [Strept... 255 5e-67 emb|CAB64459.1| (AJ243052) D-ala,D-ala ligase [Streptococcus pne... 255 6e-67 sp|O54631|DDL_STRPN D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 255 6e-67 ref|NP_359108.1| (NC_003098) D-alanine-D-alanine ligase [Strepto... 254 6e-67 emb|CAB64475.1| (AJ243056) D-ala,D-ala ligase [Streptococcus pne... 254 1e-66 emb|CAB64471.1| (AJ243055) D-ala,D-ala ligase [Streptococcus pne... 254 1e-66 ref|NP_389369.1| (NC_000964) pyruvate carboxylase [Bacillus subt... 253 2e-66 gb|AAF80469.1|AF163150_1 (AF163150) acetyl-CoA carboxylase [Glyc... 253 2e-66 pir||T07093 acetyl-CoA carboxylase (EC 6.4.1.2) biotin carboxyla... 253 2e-66 ref|NP_269512.1| (NC_002737) putative D-ala,D-ala ligase [Strept... 253 3e-66 pir||T06279 acetyl-CoA carboxylase (EC 6.4.1.2), biotin carboxyl... 252 3e-66 ref|NP_102052.1| (NC_002678) biotin carboxylase [Mesorhizobium l... 252 4e-66 sp|P25051|VANA_ENTFC VANCOMYCIN/TEICOPLANIN A-TYPE RESISTANCE PR... 252 4e-66 pir||T02431 acetyl-CoA carboxylase (EC 6.4.1.2), biotin carboxyl... 251 9e-66 emb|CAB63849.1| (AJ243051) D-ala,D-ala ligase [Streptococcus pne... 251 1e-65 ref|NP_464381.1| (NC_003210) D-alanine--D-alanine ligase [Lister... 250 1e-65 emb|CAB61227.1| (Y15704) vana protein [Bacillus circulans] 250 1e-65 pdb|1E4E|A Chain A, D-Alanyl-D-Lacate Ligase 250 1e-65 gb|AAF71281.1|AF253562_5 (AF253562) ligase [Enterococcus faecalis] 250 2e-65 gb|AAK25989.1|AF360279_1 (AF360279) putative biotin carboxylase ... 250 2e-65 ref|NP_198386.1| (NC_003076) acetyl-CoA carboxylase [Arabidopsis... 249 2e-65 gb|AAF36803.1|AF155139_2 (AF155139) putative D-alanyl-D-alanine ... 249 2e-65 ref|NP_243491.1| (NC_002570) pyruvate carboxylase [Bacillus halo... 249 3e-65 pir||T35363 D-alanine--D-alanine ligase (EC 6.3.2.4) A SC66T3.06... 249 4e-65 pdb|1E4E|B Chain B, D-Alanyl-D-Lacate Ligase 248 5e-65 ref|NP_485023.1| (NC_003272) D-alanyl-D-alanine ligase [Nostoc s... 248 5e-65 ref|NP_214014.1| (NC_000918) biotin carboxylase [Aquifex aeolicu... 248 6e-65 ref|NP_371638.1| (NC_002758) pyruvate carboxylase [Staphylococcu... 248 8e-65 emb|CAB64483.1| (AJ243058) D-ala,D-ala ligase [Streptococcus pne... 248 9e-65 ref|NP_354336.1| (NC_003062) AGR_C_2451p [Agrobacterium tumefaci... 248 9e-65 pir||T44813 biotin carboxylase (EC 6.3.4.14) yngH [imported] - B... 248 1e-64 ref|NP_470190.1| (NC_003212) D-alanine--D-alanine ligase [Lister... 247 1e-64 gb|AAG37026.1|AF277571_3 (AF277571) D-alanine:D-lactate ligase [... 247 1e-64 ref|NP_385425.1| (NC_003047) PROBABLE BIOTIN CARBOXYLASE PROTEIN... 247 2e-64 sp|Q06893|VANB_ENTFC VANCOMYCIN B-TYPE RESISTANCE PROTEIN VANB (... 246 2e-64 ref|NP_294085.1| (NC_001263) D-alanine--D-alanine ligase [Deinoc... 245 5e-64 ref|NP_171808.1| (NC_003070) putative 3-methylcrotonyl-CoA carbo... 244 9e-64 ref|NP_251581.1| (NC_002516) probable biotin carboxylase/biotin ... 244 1e-63 sp|Q47758|DDL_ENTFA D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 243 1e-63 dbj|BAA12072.1| (D83706) pyruvate carboxylase [Geobacillus stear... 243 2e-63 gb|AAF72363.1|AF192329_24 (AF192329) VanB [Enterococcus faecalis] 243 3e-63 gb|AAF57199.1| (AE003779) CG2118 gene product [Drosophila melano... 242 5e-63 gb|AAK60339.1| (AY034410) biotin carboxylase [Brassica napus] 242 5e-63 gb|AAC23582.1| (U82965) D-alanine:D-alanine ligase-related prote... 241 6e-63 gb|AAG45427.1|AF317651_4 (AF317651) pyruvate carboxylase ATP-bin... 241 6e-63 gb|AAC43218.1| (U00457) D-alanine:D-alanine ligase-related prote... 241 6e-63 ref|NP_241998.1| (NC_002570) biotin carboxylase [Bacillus halodu... 241 7e-63 ref|NP_283408.1| (NC_003116) putative acetyl-CoA carboxylase bio... 241 8e-63 ref|NP_539717.1| (NC_003317) PROPIONYL-COA CARBOXYLASE ALPHA CHA... 241 8e-63 sp|P29753|VANC_ENTGA VANCOMYCIN C-TYPE RESISTANCE PROTEIN VANC (... 241 1e-62 emb|CAB09721.1| (Z97025) pyruvate carboxylase [Bacillus subtilis] 240 2e-62 gb|AAD42184.1|AF130997_5 (AF130997) D-alanine:D-lactate ligase [... 240 2e-62 ref|NP_274857.1| (NC_003112) acetyl-CoA carboxylase, biotin carb... 239 3e-62 gb|AAG34685.1|AF310955_1 (AF310955) ligase VanB2 [Enterococcus f... 239 3e-62 emb|CAB05883.1| (Z83305) D-alanine:D-alanine ligase-related prot... 239 4e-62 ref|NP_277017.1| (NC_000916) biotin carboxylase [Methanothermoba... 239 4e-62 ref|NP_349497.1| (NC_003030) D-alanine-D-alanine ligase [Clostri... 238 5e-62 ref|NP_437988.1| (NC_003078) putative propionyl-CoA carboxylase ... 238 8e-62 gb|AAD41882.1|AF153050_3 (AF153050) D-alanine:D-lactate ligase [... 237 1e-61 ref|NP_520908.1| (NC_003295) PROBABLE BIOTIN CARBOXYLASE PROTEIN... 237 1e-61 gb|AAH06915.1|AAH06915 (BC006915) Similar to Propionyl Coenzyme ... 237 2e-61 ref|NP_372050.1| (NC_002758) acetyl-CoA carboxylase [Staphylococ... 236 2e-61 ref|NP_389706.1| (NC_000964) similar to biotin carboxylase [Baci... 236 3e-61 gb|AAG34684.1|AF310954_1 (AF310954) ligase VanB2 [Enterococcus f... 236 3e-61 gb|AAL02364.1| (AY046947) propionyl CoA-carboxylase alpha-subuni... 236 3e-61 ref|NP_534077.1| (NC_003305) propionyl-coenzyme A carboxylase, a... 236 4e-61 sp|Q47823|DDL_ENTGA D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 235 4e-61 gb|AAG34683.1|AF310953_1 (AF310953) ligase VanB2 [Enterococcus f... 235 5e-61 ref|NP_253535.1| (NC_002516) biotin carboxylase [Pseudomonas aer... 235 6e-61 ref|NP_248224.1| (NC_000909) biotin carboxylase (accC) [Methanoc... 234 9e-61 ref|NP_000273.1| (NM_000282) Propionyl-Coenzyme A carboxylase, a... 234 1e-60 ref|NP_357031.1| (NC_003063) AGR_L_580GMp [Agrobacterium tumefac... 234 1e-60 gb|AAD19835.1| (AF060799) D-alanyl-D-alanine ligase [Amycolatops... 234 1e-60 pir||A34337 propionyl-CoA carboxylase (EC 6.4.1.3) alpha chain p... 233 2e-60 gb|AAA60990.1| (L29638) ligase [Enterococcus casseliflavus] 233 2e-60 ref|NP_103309.1| (NC_002678) D-alanine-D-alanine ligase A [Mesor... 233 2e-60 pir||T06360 methylcrotonoyl-CoA carboxylase (EC 6.4.1.4) biotin ... 233 2e-60 ref|NP_102581.1| (NC_002678) propionyl-CoA carboxylase alpha cha... 233 2e-60 gb|AAD51060.1|AF175293_5 (AF175293) D-alanine:D-lactate ligase [... 232 4e-60 ref|NP_350153.1| (NC_003030) Biotin carboxylase [Clostridium ace... 232 5e-60 ref|NP_300241.1| (NC_002491) biotin carboxylase [Chlamydophila p... 231 6e-60 ref|NP_254123.1| (NC_002516) probable biotin carboxylase subunit... 231 9e-60 gb|AAB31500.1| (S72370) pyruvate carboxylase; pyruvate:carbon di... 231 1e-59 ref|NP_224391.1| (NC_000922) Biotin Carboxylase [Chlamydophila p... 231 1e-59 sp|P11498|PYC_HUMAN Pyruvate carboxylase, mitochondrial precurso... 231 1e-59 ref|NP_036876.1| (NM_012744) pyruvate carboxylase [Rattus norveg... 231 1e-59 pir||S68252 pyruvate carboxylase (EC 6.4.1.1) precursor - rat >g... 231 1e-59 gb|AAF32338.1|AF218939_6 (AF218939) acetyl-CoA carboxylase [Baci... 230 1e-59 sp|Q9ZGN0|DDL_MYCSM D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 230 2e-59 ref|NP_032823.1| (NM_008797) pyruvate decarboxylase [Mus musculu... 229 2e-59 ref|NP_000911.1| (NM_000920) pyruvate carboxylase precursor [Hom... 229 2e-59 emb|CAA70282.1| (Y09061) acetyl-CoA carboxylase, biotin carboxyl... 229 2e-59 gb|AAA88512.1| (M22631) alpha-propionyl-CoA carboxylase (EC 6.4.... 229 3e-59 gb|AAB92588.1| (AF038548) pyruvate carboxylase [Corynebacterium ... 229 3e-59 ref|NP_293843.1| (NC_001263) acetyl-CoA carboxylase, biotin carb... 229 3e-59 ref|NP_220281.1| (NC_000117) UDP-N-acetylmuramate-alanine ligase... 229 4e-59 sp|P14882|PCCA_RAT PROPIONYL-COA CARBOXYLASE ALPHA CHAIN, MITOCH... 229 4e-59 ref|NP_302152.1| (NC_002677) D-alanine-D-alanine ligase A [Mycob... 229 4e-59 ref|NP_219627.1| (NC_000117) Biotin Carboxylase [Chlamydia trach... 229 4e-59 ref|NP_297342.1| (NC_002488) biotin carboxylase subunit of acety... 229 5e-59 ref|NP_357130.1| (NC_003063) AGR_L_2704p [Agrobacterium tumefaci... 229 5e-59 ref|NP_219107.1| (NC_000919) D-alanine--D-alanine ligase (ddlA) ... 228 5e-59 ref|NP_104954.1| (NC_002678) pyruvate carboxylase [Mesorhizobium... 228 5e-59 ref|NP_440997.1| (NC_000911) D-alanine:D-alanine ligase-related ... 228 6e-59 ref|NP_337574.1| (NC_002755) D-alanine--D-alanine ligase [Mycoba... 227 2e-58 ref|NP_107983.1| (NC_002678) 3-methylcrotonyl-CoA carboxylase bi... 226 2e-58 dbj|BAB16297.1| (AB039884) acetyl-CoA carboxylase biotin carboxy... 226 2e-58 ref|NP_243653.1| (NC_002570) acetyl-CoA carboxylase biotin carbo... 226 2e-58 emb|CAB87214.1| (AL163641) acetyl/propionyl CoA carboxylase alph... 226 3e-58 ref|NP_217497.1| (NC_000962) ddlA [Mycobacterium tuberculosis H3... 226 3e-58 ref|NP_355659.1| (NC_003062) AGR_C_4940p [Agrobacterium tumefaci... 226 4e-58 ref|NP_296778.1| (NC_002620) acetyl-coenzyme A carboxylase, biot... 226 4e-58 sp|Q9ZBR9|DDL_STRCO D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 225 4e-58 gb|AAF09095.1|AF068759_1 (AF068759) pyruvate carboxylase [Lactoc... 225 4e-58 gb|AAG37836.1|AF295372_1 (AF295372) pyruvate carboxylase [Danio ... 225 5e-58 ref|NP_009767.1| (NC_001134) Urea amidolyase (contains urea carb... 225 6e-58 ref|NP_214048.1| (NC_000918) pyruvate carboxylase n-terminal dom... 225 6e-58 ref|NP_387384.1| (NC_003047) PROBABLE PYRUVATE CARBOXYLASE PROTE... 224 7e-58 ref|NP_470397.1| (NC_003212) highly similar to pyruvate carboxyl... 224 8e-58 ref|NP_505977.1| (NM_073576) pyruvate carboxylase [Caenorhabditi... 224 1e-57 pir||T43735 pyruvate carboxylase (EC 6.4.1.1) [validated] - yell... 224 1e-57 ref|NP_069058.1| (NC_000917) biotin carboxylase (acc) [Archaeogl... 224 1e-57 ref|NP_464597.1| (NC_003210) highly similar to pyruvate carboxyl... 224 1e-57 ref|NP_217017.1| (NC_000962) accA1 [Mycobacterium tuberculosis H... 223 2e-57 ref|NP_439133.1| (NC_000907) acetyl-CoA carboxylase, biotin carb... 223 2e-57 gb|AAA67356.1| (U12536) 3-methylcrotonyl-CoA carboxylase precurs... 223 2e-57 ref|NP_501777.1| (NM_069376) carbomoyl-phosphate carboxylase [Ca... 223 2e-57 ref|NP_539184.1| (NC_003317) PYRUVATE CARBOXYLASE [Brucella meli... 223 2e-57 ref|NP_349267.1| (NC_003030) Pyruvate carboxylase, PYKA [Clostri... 222 3e-57 gb|AAD34740.1| (AF132152) unknown [Drosophila melanogaster] >gi|... 222 3e-57 gb|AAL27442.1|AF430807_7 (AF430807) VanE [Enterococcus faecalis] 222 4e-57 gb|AAC41643.1| (M64926) urea amidolyase [Saccharomyces cerevisiae] 222 4e-57 ref|NP_390314.1| (NC_000964) acetyl-CoA carboxylase subunit (bio... 222 4e-57 gb|AAC44388.1| (U51439) pyruvate carboxylase [Rhizobium etli] 222 4e-57 gb|AAG22289.1| (AE003831) BcDNA:GH06348 gene product [alt 1] [Dr... 222 4e-57 ref|NP_229950.1| (NC_002505) acetyl-CoA carboxylase, biotin carb... 222 5e-57 ref|NP_296522.1| (NC_002620) UDP-N-acetylmuramate--alanine ligas... 222 5e-57 ref|NP_009777.1| (NC_001134) converts pyruvate to oxaloacetate; ... 222 5e-57 ref|NP_407114.1| (NC_003143) biotin carboxylase [Yersinia pestis... 222 6e-57 ref|NP_246028.1| (NC_002663) AccC [Pasteurella multocida] >gi|12... 222 6e-57 ref|NP_540842.1| (NC_003317) acetyl-CoA carboxylase alpha chain ... 221 6e-57 ref|NP_533976.1| (NC_003305) 3-methylcrotonyl-CoA carboxylase al... 221 9e-57 sp|Q9PLG1|MUDD_CHLMU MURC/DDL BIFUNCTIONAL ENZYME [INCLUDES: UDP... 221 1e-56 sp|P49787|ACCC_BACSU BIOTIN CARBOXYLASE (A SUBUNIT OF ACETYL-COA... 221 1e-56 emb|CAA42544.1| (X59890) pyruvate carboxylase [Saccharomyces cer... 220 1e-56 ref|NP_518386.1| (NC_003295) PROBABLE ACYL-COA CARBOXYLASE ALPHA... 219 3e-56 ref|NP_420691.1| (NC_002696) acetyl-CoA carboxylase, biotin carb... 219 3e-56 gb|AAA34843.1| (J03889) pyruvate carboxylase (EC 6.4.1.1) [Sacch... 219 5e-56 ref|NP_282187.1| (NC_002163) putative pyruvate carboxylase A sub... 219 5e-56 ref|NP_437243.1| (NC_003078) putative methylcrotonoyl-CoA carbox... 218 5e-56 ref|NP_011453.1| (NC_001139) converts pyruvate to oxaloacetate; ... 218 6e-56 pir||T39734 pyruvate carboxylase (EC 6.4.1.1) [similarity] - fis... 218 6e-56 ref|NP_509293.1| (NM_076892) Propionyl-coA carboxylase alpha cha... 218 7e-56 ref|NP_250702.1| (NC_002516) probable acyl-CoA carboxylase alpha... 218 7e-56 ref|NP_539644.1| (NC_003317) D-ALANINE--D-ALANINE LIGASE A [Bruc... 218 8e-56 dbj|BAA11239.1| (D78170) pyruvate carboxylase [Schizosaccharomyc... 217 1e-55 ref|NP_464882.1| (NC_003210) acetyl-CoA carboxylase subunit (bio... 217 1e-55 ref|NP_312155.1| (NC_002695) acetyl CoA carboxylase biotin carbo... 217 1e-55 ref|NP_470730.1| (NC_003212) acetyl-CoA carboxylase subunit (bio... 217 1e-55 ref|NP_417722.1| (NC_000913) acetyl CoA carboxylase, biotin carb... 217 1e-55 ref|NP_457756.1| (NC_003198) biotin carboxylase [Salmonella ente... 217 2e-55 gb|AAG10491.1|AF279106_53 (AF279106) predicted acetyl-CoA carbox... 217 2e-55 ref|NP_214146.1| (NC_000918) biotin carboxylase [Aquifex aeolicu... 217 2e-55 ref|NP_289824.1| (NC_002655) acetyl CoA carboxylase, biotin carb... 217 2e-55 gb|AAA23748.1| (M79446) biotin carboxylase [Escherichia coli] 216 2e-55 gb|AAC69197.1| (AF097728) pyruvate carboxylase [Aspergillus terr... 216 3e-55 ref|NP_376481.1| (NC_003106) 513aa long hypothetical biotin carb... 216 3e-55 emb|CAC19838.1| (AJ009972) pyruvate carboxylase [Aspergillus niger] 216 3e-55 gb|AAD25800.1|AC006550_8 (AC006550) Identical to gb|U12536 3-met... 215 4e-55 ref|NP_047031.1| (NC_001905) PCACA; L549.5 [Leishmania major] >g... 215 5e-55 ref|NP_106581.1| (NC_002678) 3-methylcrotonyl-CoA carboxylase bi... 215 5e-55 pir||T06565 acetyl-CoA carboxylase (EC 6.4.1.2) biotin carboxyla... 215 7e-55 pdb|1DV2|A Chain A, The Structure Of Biotin Carboxylase, Mutant ... 215 7e-55 ref|NP_420982.1| (NC_002696) propionyl-CoA carboxylase, alpha su... 214 9e-55 pdb|1EHI|A Chain A, D-Alanine:d-Lactate Ligase (Lmddl2) Of Vanco... 214 1e-54 ref|NP_266934.1| (NC_002662) biotin carboxylase (EC 6.3.4.14) [L... 214 1e-54 ref|NP_282436.1| (NC_002163) biotin carboxylase [Campylobacter j... 214 1e-54 ref|NP_360596.1| (NC_003103) propionyl-CoA carboxylase alpha cha... 214 2e-54 ref|NP_220985.1| (NC_000963) PROPIONYL-COA CARBOXYLASE ALPHA CHA... 213 2e-54 sp|Q48745|DDL_LEUME D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 213 2e-54 gb|AAB18338.1| (U75444) D-Ala-D-Ala ligase2 [Leuconostoc mesente... 213 2e-54 ref|NP_344948.1| (NC_003028) acetyl-CoA carboxylase, biotin carb... 212 4e-54 ref|NP_357979.1| (NC_003098) Biotin carboxylase (a subunit of ac... 212 5e-54 pir||S71009 biotin carboxylase protein A2 - Saccharopolyspora er... 212 6e-54 gb|AAD37851.1|AF126429_1 (AF126429) JadJ [Streptomyces venezuelae] 211 9e-54 prf||2009329A urea amidolyase [Pichia jadinii] 211 9e-54 emb|CAC22142.1| (AL512902) putative acyl-CoA carboxylase complex... 211 1e-53 pir||S71006 biotin carboxylase protein A1 - Saccharopolyspora er... 210 1e-53 emb|CAC21629.1| (AL512667) putative acyl-CoA carboxylase complex... 210 2e-53 ref|NP_249185.1| (NC_002516) probable acyl-CoA carboxylase subun... 210 2e-53 ref|NP_225100.1| (NC_000922) Muramate-Ala Ligase & D-Ala-D-Ala L... 210 2e-53 ref|NP_372130.1| (NC_002758) acetyl-CoA carboxylase [Staphylococ... 209 3e-53 gb|AAA53140.1| (U08469) 3-methylcrotonyl-CoA carboxylase, biotin... 209 4e-53 pir||T42206 probable acyl-CoA carboxylase complex A chain - Stre... 209 5e-53 gb|AAG30191.1| (AF293442) biotin carboxylase [Streptomyces sp. R... 208 7e-53 ref|NP_269768.1| (NC_002737) putative acetyl-CoA carboxylase bio... 208 8e-53 pir||T42202 probable acyl-CoA carboxylase complex A chain - Stre... 207 1e-52 ref|NP_356380.1| (NC_003063) AGR_L_1177p [Agrobacterium tumefaci... 207 2e-52 ref|NP_522501.1| (NC_003296) PUTATIVE BIOTIN CARBOXYLASE PROTEIN... 206 3e-52 gb|AAB40890.1| (U35023) acyl coenzyme A carboxylase [Corynebacte... 206 4e-52 ref|NP_266825.1| (NC_002662) pyruvate carboxylase (6.4.1.1) [Lac... 206 4e-52 ref|NP_252890.1| (NC_002516) D-alanine-D-alanine ligase A [Pseud... 204 2e-51 ref|NP_420971.1| (NC_002696) acetyl/propionyl-CoA carboxylase, a... 203 3e-51 ref|NP_232019.1| (NC_002505) carbamoyl-phosphate synthase, large... 202 3e-51 ref|NP_253100.1| (NC_002516) D-alanine--D-alanine ligase [Pseudo... 202 3e-51 gb|AAK97387.1|AF363615_1 (AF363615) D-alanine:D-alanine ligase 2... 202 4e-51 sp|Q9TTS3|COA1_BOVIN ACETYL-COA CARBOXYLASE 1 (ACC-ALPHA) [INCLU... 201 1e-50 sp|Q28559|COA1_SHEEP ACETYL-COA CARBOXYLASE 1 (ACC-ALPHA) [INCLU... 201 1e-50 gb|AAG40564.1|AF062308_2 (AF062308) acetyl-CoA carboxylase 2 [Ar... 201 1e-50 sp|P78992|PYC_PICPA PYRUVATE CARBOXYLASE (PYRUVIC CARBOXYLASE) (... 201 1e-50 sp|P11029|COAC_CHICK ACETYL-COA CARBOXYLASE (ACC) [INCLUDES: BIO... 200 2e-50 ref|NP_174850.1| (NC_003070) acetyl-CoA carboxylase, putative [A... 200 2e-50 ref|NP_459135.1| (NC_003197) D-alanine-D-alanine ligase B, affec... 200 2e-50 ref|NP_356721.1| (NC_003063) AGR_L_1864p [Agrobacterium tumefaci... 200 2e-50 gb|AAG30411.1|AF262949_2 (AF262949) pyruvate carboxylase [Mycoba... 199 3e-50 ref|NP_343814.1| (NC_002754) Biotin carboxylase a subunit of pro... 199 3e-50 ref|NP_454742.1| (NC_003198) D-alanine:D-alanine ligase B [Salmo... 199 3e-50 ref|NP_174849.1| (NC_003070) acetyl-CoA carboxylase, putative [A... 199 3e-50 dbj|BAA07012.1| (D34630) acetyl-CoA carboxylase [Arabidopsis tha... 199 3e-50 gb|AAF18638.2|AC006228_9 (AC006228) F5J5.19 [Arabidopsis thaliana] 199 3e-50 emb|CAB48407.1| (AJ243652) urea amidolyase homologue [Pseudomona... 199 4e-50 gb|AAL02056.1|AF294805_1 (AF294805) acetyl-coenzyme A carboxylas... 199 4e-50 gb|AAC41645.1| (L27074) acetyl-CoA carboxylase [Arabidopsis thal... 199 5e-50 ref|NP_212334.1| (NC_001318) D-alanine--D-alanine ligase (ddlA) ... 198 5e-50 pir||S41121 acetyl-CoA carboxylase (EC 6.4.1.2) - human >gi|4523... 198 5e-50 pir||T44290 biotin carboxylase (EC 6.3.4.14) [imported] - Sulfol... 198 6e-50 ref|NP_439298.1| (NC_000907) D-alanine--D-alanine ligase (ddlB) ... 197 1e-49 ref|NP_414634.1| (NC_000913) D-alanine-D-alanine ligase B, affec... 197 1e-49 ref|NP_207168.1| (NC_000915) biotin carboxylase (accC) [Helicoba... 197 1e-49 ref|NP_223728.1| (NC_000921) BIOTIN CARBOXYLASE [Helicobacter py... 197 2e-49 pir||T02235 acetyl-CoA carboxylase (EC 6.4.1.2) - maize >gi|8547... 197 2e-49 pir||T06161 acetyl-CoA carboxylase (EC 6.4.1.2) - wheat >gi|2827... 197 2e-49 emb|CAA89922.1| (Z49809) unknown [Saccharomyces cerevisiae] 197 2e-49 ref|NP_280339.1| (NC_002607) biotin carboxylase; Acc [Halobacter... 197 2e-49 pir||T09538 acetyl-CoA carboxylase (EC 6.4.1.2) - alfalfa >gi|49... 197 2e-49 ref|NP_285788.1| (NC_002655) D-alanine-D-alanine ligase B, affec... 197 2e-49 ref|NP_420636.1| (NC_002696) urea amidolyase-related protein [Ca... 196 2e-49 ref|NP_404198.1| (NC_003143) D-alanine--D-alanine ligase B [Yers... 196 3e-49 pdb|1IOW| Complex Of Y216f D-Ala:d-Ala Ligase With Adp And A P... 196 3e-49 ref|NP_276131.1| (NC_000916) carbamoyl-phosphate synthase, large... 196 3e-49 ref|NP_274851.1| (NC_003112) carbamoyl-phosphate synthase, large... 196 3e-49 emb|CAA80280.1| (Z22558) HFA1 [Saccharomyces cerevisiae] 196 4e-49 emb|CAB59603.1| (AL132662) pyruvate carboxylase [Streptomyces co... 196 4e-49 emb|CAC84690.1| (AJ306727) D-Ala:D-Lac ligase [Enterococcus faec... 196 4e-49 ref|NP_454677.1| (NC_003198) carbamoyl-phosphate synthase large ... 196 4e-49 emb|CAC19876.1| (AJ131866) acetyl-CoA carboxylase [Brassica napus] 195 5e-49 sp|P14846|CARB_SALTY CARBAMOYL-PHOSPHATE SYNTHASE LARGE CHAIN (C... 195 5e-49 sp|P32874|HFA1_YEAST HFA1 PROTEIN 195 5e-49 ref|NP_246444.1| (NC_002663) CarB [Pasteurella multocida] >gi|12... 195 5e-49 dbj|BAA24410.1| (D78165) acetyl-coenzyme A carboxylase like carb... 195 5e-49 ref|NP_459072.1| (NC_003197) carbamoyl-phosphate synthase, large... 195 5e-49 ref|NP_245081.1| (NC_002663) DdlB [Pasteurella multocida] >gi|13... 195 6e-49 ref|NP_371727.1| (NC_002758) carbamoyl-phosphate synthase large ... 195 6e-49 pir||S73055 pyc protein - Mycobacterium tuberculosis >gi|560527|... 195 7e-49 pir||A57710 acetyl-CoA carboxylase (EC 6.4.1.2) - wheat >gi|5143... 195 8e-49 gb|AAC49275.1| (U39321) acetyl-CoA carboxylase [Triticum aestivu... 194 8e-49 ref|NP_283414.1| (NC_003116) carbamoyl phosphate synthase large ... 194 8e-49 ref|NP_519642.1| (NC_003295) PROBABLE CARBAMOYL-PHOSPHATE SYNTHA... 194 9e-49 pir||T06162 acetyl-CoA carboxylase (EC 6.4.1.2) - wheat (fragmen... 194 1e-48 gb|AAC39331.1| (AF029896) acetyl-coenzyme A carboxylase [Triticu... 194 1e-48 ref|NP_071529.1| (NM_022193) acetyl-coenzyme A carboxylase [Ratt... 194 1e-48 dbj|BAA93643.1| (AB025973) biotin carboxylase [Lactobacillus pla... 194 1e-48 ref|NP_070102.1| (NC_000917) carbamoyl-phosphate synthase, large... 194 1e-48 gb|AAF16526.1|AF191301_2 (AF191301) ADP-forming, carbamate-phosp... 194 1e-48 gb|AAF04493.2|AF157612_1 (AF157612) acetyl-CoA carboxylase 1 pre... 194 2e-48 ref|NP_217483.1| (NC_000962) pca [Mycobacterium tuberculosis H37... 194 2e-48 emb|CAC84688.1| (AJ306726) D-Ala:D-Lac ligase [Enterococcus faec... 193 2e-48 pdb|1CE8|A Chain A, Carbamoyl Phosphate Synthetase From Escheric... 193 2e-48 ref|NP_414574.1| (NC_000913) carbamoyl-phosphate synthase large ... 193 2e-48 ref|NP_285727.1| (NC_002655) carbamoyl-phosphate synthase large ... 193 2e-48 ref|NP_000655.1| (NM_000664) acetyl-Coenzyme A carboxylase alpha... 193 3e-48 pir||T07920 probable acetyl-CoA carboxylase (EC 6.4.1.2) - rape ... 192 4e-48 emb|CAC19875.1| (AJ131865) acetyl-CoA carboxylase [Brassica napus] 192 5e-48 pir||T07923 acetyl-CoA carboxylase (EC 6.4.1.2) A - rape (fragme... 191 8e-48 pir||T07084 acetyl-CoA carboxylase (EC 6.4.1.2) A - soybean >gi|... 191 1e-47 ref|NP_248384.1| (NC_000909) carbamoyl-phosphate synthase, large... 190 1e-47 ref|NP_269044.1| (NC_002737) putative carbamoylphosphate synthet... 190 1e-47 ref|NP_404125.1| (NC_003143) carbamoyl-phosphate synthase large ... 190 2e-47 ref|NP_013934.1| (NC_001145) Similar to acetyl-coenzyme A carbox... 189 3e-47 ref|NP_242487.1| (NC_002570) D-alanyl-D-alanine ligase A [Bacill... 189 3e-47 ref|NP_298397.1| (NC_002488) carbamoyl-phosphate synthase large ... 189 4e-47 ref|NP_232962.1| (NC_002506) D-alanine--D-alanine ligase [Vibrio... 189 5e-47 ref|NP_520963.1| (NC_003295) PROBABLE D-ALANINE--D-ALANINE LIGAS... 188 6e-47 gb|AAF59156.1| (AE003839) CG8723 gene product [Drosophila melano... 188 9e-47 ref|NP_345739.1| (NC_003028) carbamoyl-phosphate synthase, large... 186 2e-46 ref|NP_358746.1| (NC_003098) Carbamoylphosphate synthase (ammoni... 186 2e-46 ref|NP_215900.1| (NC_000962) Carbamoylphosphate synthase large s... 186 2e-46 ref|NP_301567.1| (NC_002677) acetyl/propionyl CoA carboxylase [a... 186 3e-46 ref|NP_281472.1| (NC_002163) carbamoyl-phosphate synthase large ... 186 4e-46 pir||A55579 biotin carboxyl carrier protein - Mycobacterium lepr... 185 5e-46 pir||T07081 acetyl-CoA carboxylase (EC 6.4.1.2) B - soybean (fra... 185 5e-46 ref|NP_349251.1| (NC_003030) Carbamoylphosphate synthase large s... 185 5e-46 ref|NP_253444.1| (NC_002516) carbamoylphosphate synthetase large... 185 5e-46 ref|NP_217802.1| (NC_000962) accA3 [Mycobacterium tuberculosis H... 185 6e-46 ref|NP_285633.1| (NC_001264) carboxylase [Deinococcus radioduran... 185 7e-46 ref|NP_386277.1| (NC_003047) PROBABLE D-ALANINE--D-ALANINE LIGAS... 185 7e-46 pir||T44419 carbamoyl-phosphate synthase (glutamine-hydrolyzing)... 185 8e-46 ref|NP_301455.1| (NC_002677) putative carbamoyl-phosphate syntha... 184 9e-46 pir||T30568 acetyl-CoA carboxylase (EC 6.4.1.2) - Emericella nid... 184 1e-45 ref|NP_389435.1| (NC_000964) carbamoyl-phosphate synthetase (cat... 184 1e-45 ref|NP_103112.1| (NC_002678) D-alanyl-D-alanine ligase [Mesorhiz... 184 1e-45 sp|P08955|PYR1_MESAU CAD PROTEIN [INCLUDES: GLUTAMINE-DEPENDENT ... 183 2e-45 gb|AAA37062.1| (J05503) carbamoyl-phosphate synthetase (E.C.6.3.... 183 2e-45 gb|AAB67843.1| (U40341) carbamoyl phosphate synthetase large cha... 183 2e-45 ref|NP_457899.1| (NC_003198) phosphoribosylglycineamide syntheta... 183 2e-45 ref|NP_213366.1| (NC_000918) D-alanine:D-alanine ligase [Aquifex... 183 2e-45 ref|NP_463044.1| (NC_003197) phosphoribosylglycinamide synthetas... 183 3e-45 gb|AAA24455.1| (J05126) purD (EC 6.3.4.13) [Escherichia coli] 183 3e-45 ref|NP_290637.1| (NC_002655) phosphoribosylglycinamide synthetas... 182 3e-45 ref|NP_243402.1| (NC_002570) carbamoyl-phosphate synthetase (cat... 182 5e-45 emb|CAB44435.1| (AJ242913) carbamoylphosphate synthase (large su... 182 5e-45 gb|AAD09129.1| (AF112473) PyrABCN [Emericella nidulans] 182 6e-45 ref|NP_229931.1| (NC_002505) phosphoribosylamine--glycine ligase... 182 6e-45 ref|NP_418433.1| (NC_000913) phosphoribosylglycinamide synthetas... 182 6e-45 emb|CAA03928.1| (AJ000109) carbamoylphosphate synthetase [Lactoc... 182 6e-45 ref|NP_267519.1| (NC_002662) carbamoylphosphate synthetase [Lact... 181 7e-45 gb|AAA68280.1| (M27174) carbamyl phosphate synthetase [Saccharom... 180 2e-44 ref|NP_012405.1| (NC_001142) First and second steps of pyrimidin... 180 2e-44 emb|CAA60825.1| (X87371) carbamyl phosphate synthetase [Saccharo... 180 2e-44 ref|NP_245161.1| (NC_002663) PurD [Pasteurella multocida] >gi|13... 180 2e-44 pdb|1GSO|A Chain A, Glycinamide Ribonucleotide Synthetase (Gar-S... 180 2e-44 ref|NP_446374.1| (NM_053922) acetyl-Coenzyme A carboxylase beta ... 179 3e-44 pir||S49991 acetyl-CoA carboxylase (EC 6.4.1.2) - smut fungus (U... 179 3e-44 emb|CAB56843.1| (X99978) carbamoyl-phosphate synthase large subu... 179 3e-44 ref|NP_228072.1| (NC_000853) D-alanine--D-alanine ligase [Thermo... 179 5e-44 ref|NP_439049.1| (NC_000907) phosphoribosylamine--glycine ligase... 179 5e-44 ref|NP_250091.1| (NC_002516) probable pyruvate carboxylase [Pseu... 178 7e-44 sp|O51927|DDL_BUCAP D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 178 8e-44 sp|P46537|CARB_BACCL CARBAMOYL-PHOSPHATE SYNTHASE, PYRIMIDINE-SP... 178 9e-44 ref|XP_002428.5| (XM_002428) similar to carbamoyl-phosphate synt... 178 9e-44 emb|CAB95026.1| (AJ237851) D-alanine-D-alanine ligase [Prochloro... 178 9e-44 ref|NP_487849.1| (NC_003272) carbamoyl phosphate synthetase larg... 177 1e-43 ref|NP_004332.1| (NM_004341) carbamoyl-phosphate synthetase 2, a... 177 2e-43 ref|NP_294391.1| (NC_001263) carbamoyl-phosphate synthase, large... 177 2e-43 ref|NP_215488.1| (NC_000962) accA2 [Mycobacterium tuberculosis H... 176 2e-43 sp|Q09794|PYR1_SCHPO URA1 PROTEIN [INCLUDES: GLUTAMINE-DEPENDENT... 176 2e-43 gb|AAA74996.1| (U11295) carbamoyl phosphate synthetase (glutamin... 176 3e-43 ref|NP_389006.1| (NC_000964) carbamoyl-phosphate transferase-arg... 176 3e-43 sp|P77886|CARB_LACPL CARBAMOYL-PHOSPHATE SYNTHASE, PYRIMIDINE-SP... 176 3e-43 ref|NP_228367.1| (NC_000853) carbamoyl-phosphate synthase, large... 176 3e-43 pir||A48757 acetyl-CoA carboxylase (EC 6.4.1.2) - Cyclotella cry... 175 5e-43 ref|XP_011009.3| (XM_011009) methylcrotonoyl-Coenzyme A carboxyl... 175 6e-43 gb|AAB62175.1| (U94527) vancomycin resistance protein B [Enteroc... 174 8e-43 sp|Q91437|PYR1_SQUAC CAD PROTEIN [INCLUDES: GLUTAMINE-DEPENDENT ... 174 9e-43 emb|CAA72256.1| (Y11467) carbamoyl-phosphate synthase (glutamine... 174 9e-43 ref|NP_465360.1| (NC_003210) highly similar to carbamoyl-phospha... 174 1e-42 pir||T33717 carbamoyl-phosphate synthase (glutamine-hydrolyzing)... 174 1e-42 ref|NP_385682.1| (NC_003047) PROBABLE CARBAMOYL-PHOSPHATE SYNTHA... 174 1e-42 ref|NP_284760.1| (NC_003116) D-alanine--D-alanine ligase B [Neis... 174 1e-42 pir||T51694 D-alanine--D-alanine ligase (EC 6.3.2.4) [imported] ... 174 1e-42 ref|NP_103843.1| (NC_002678) carbamoyl-phosphate synthase large ... 174 1e-42 sp|P78820|COAC_SCHPO ACETYL-COA CARBOXYLASE (ACC) [INCLUDES: BIO... 174 2e-42 gb|AAA20073.1| (M92156) acetyl-CoA carboxylase [Saccharomyces ce... 173 2e-42 ref|NP_014413.1| (NC_001146) acetyl-CoA carboxylase; Acc1p [Sacc... 173 2e-42 pdb|1A9X|A Chain A, Carbamoyl Phosphate Synthetase: Caught In Th... 173 2e-42 ref|NP_355138.1| (NC_003062) AGR_C_3955p [Agrobacterium tumefaci... 173 2e-42 ref|NP_239976.1| (NC_002528) carbamoyl-phosphate synthase large ... 173 3e-42 ref|NP_471283.1| (NC_003212) highly similar to carbamoyl-phospha... 173 3e-42 ref|NP_532851.1| (NC_003304) carbamoylphosphate synthase large s... 172 3e-42 ref|NP_520312.1| (NC_003295) PROBABLE PHOSPHORIBOSYLAMINE--GLYCI... 172 4e-42 ref|NP_273472.1| (NC_003112) D-alanine--D-alanine ligase [Neisse... 172 5e-42 pir||I67805 purine synthesis multifunctional protein - mouse >gi... 172 5e-42 pir||S65074 pyrimidine synthesis protein URA1 - fission yeast (... 172 6e-42 gb|AAD53933.1|AF179611_17 (AF179611) D-alanine:D-alanine ligase ... 172 6e-42 ref|NP_241500.1| (NC_002570) phosphoribosylglycinamide synthetas... 172 6e-42 ref|NP_034386.1| (NM_010256) phosphoribosylglycinamide formyltra... 172 7e-42 ref|NP_442333.1| (NC_000911) carbamoyl-phosphate synthase, pyrim... 171 7e-42 ref|NP_441646.1| (NC_000911) glycinamide ribonucleotide syntheta... 171 7e-42 ref|NP_174283.1| (NC_003070) carbamoylphosphate synthetase, puta... 171 1e-41 ref|NP_421694.1| (NC_002696) carbamoyl-phosphate synthase, large... 171 1e-41 ref|NP_001084.1| (NM_001093) acetyl-Coenzyme A carboxylase beta ... 171 1e-41 ref|NP_280547.1| (NC_002607) carbamoyl-phosphate synthase large ... 171 1e-41 ref|NP_281959.1| (NC_002163) putative D-alanine--D-alanine ligas... 171 1e-41 ref|NP_253542.1| (NC_002516) phosphoribosylamine--glycine ligase... 170 2e-41 gb|AAB62176.1| (U94528) vancomycin resistance protein B [Enteroc... 170 2e-41 emb|CAA55651.1| (X79049) vanA2 [Oerskovia turbata] 170 2e-41 sp|Q99148|PUR2_YARLI BIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN AD... 170 3e-41 pir||T46882 phosphoribosylamine--glycine ligase (EC 6.3.4.13) [i... 170 3e-41 gb|AAC53250.1| (U20892) glycinamide ribonucleotide synthetase [M... 169 3e-41 gb|AAB62174.1| (U94526) vancomycin resistance protein B [Enteroc... 169 3e-41 ref|NP_493922.1| (NM_061521) acetyl-CoA carboxylase [Caenorhabdi... 169 3e-41 ref|NP_523497.1| (NM_078773) adenosine 3; Complementation group ... 169 4e-41 ref|NP_407179.1| (NC_003143) phosphoribosylamine--glycine ligase... 168 7e-41 ref|NP_214438.1| (NC_000918) carbamoyl-phosphate synthase large ... 168 7e-41 ref|NP_299258.1| (NC_002488) glycinamide ribonucleotide syntheta... 168 7e-41 ref|NP_172454.1| (NC_003070) putative phosphoribosylglycinamide ... 168 7e-41 emb|CAB93363.1| (AL357523) carbamoylphosphate synthetase large c... 168 8e-41 ref|NP_275136.1| (NC_003112) phosphoribosylamine--glycine ligase... 168 1e-40 ref|NP_213797.1| (NC_000918) carbamoyl-phosphate synthase large ... 168 1e-40 ref|NP_243761.1| (NC_002570) arginine specific carbamoyl-phospha... 167 2e-40 gb|AAA60989.1| (L29641) D-alanine-D-alanine ligase-related enzym... 167 2e-40 ref|NP_539439.1| (NC_003317) CARBAMOYL-PHOSPHATE SYNTHASE LARGE ... 167 2e-40 ref|NP_000810.1| (NM_000819) phosphoribosylglycinamide formyltra... 166 2e-40 gb|AAD51318.2| (AF169248) acetylglutamate-activated carbamoyl ph... 166 2e-40 gb|AAA60988.1| (L29640) D-alanine-D-alanine ligase-related enzym... 166 2e-40 sp|P00967|PUR2_DROME TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN A... 166 3e-40 gb|AAD43968.1|AF119250_1 (AF119250) carbamoyl-phosphate syntheta... 166 3e-40 ref|NP_058768.1| (NM_017072) carboamyl-phosphate synthetase 1 [R... 166 3e-40 ref|NP_283078.1| (NC_003116) phosphoribosylamine--glycine ligase... 165 4e-40 gb|AAC78719.1| (U43091) carbamoylphosphate synthetase heavy subu... 165 5e-40 gb|AAC60207.1| (U65893) carbamoyl-phosphate synthetase III [Onco... 165 5e-40 gb|AAB41852.1| (U69163) D-Alanine:D-Alanine ligase [Streptococcu... 165 5e-40 dbj|BAA06809.1| (D32051) GARS protein [Homo sapiens] 165 7e-40 ref|NP_213510.1| (NC_000918) phosphoribosylamine-glycine ligase ... 165 7e-40 gb|AAA28562.1| (J02527) Gart polypeptide 1.7 kb transcript [Dros... 165 7e-40 gb|AAF04494.2|AF157613_1 (AF157613) acetyl-CoA carboxylase 2 [To... 165 7e-40 pir||T42531 acetyl-CoA carboxylase (EC 6.4.1.2) - fission yeast ... 165 8e-40 gb|AAF71749.1| (AF257743) phosphoribosylglycinamide formyltransf... 164 9e-40 sp|P16340|PUR2_DROPS TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN A... 164 9e-40 ref|NP_012643.1| (NC_001142) carbamyl phosphate synthetase; Cpa2... 164 1e-39 gb|AAB41856.1| (U69167) D-Alanine:D-Alanine ligase [Streptococcu... 164 1e-39 gb|AAB49636.1| (U72704) vancomycin resistance protein [Enterococ... 164 1e-39 ref|NP_388535.1| (NC_000964) phosphoribosylglycinamide synthetas... 164 1e-39 gb|AAF37343.1|AF170804_1 (AF170804) D-alanine:D-alanine ligase [... 164 1e-39 ref|NP_355054.1| (NC_003062) AGR_C_3788p [Agrobacterium tumefaci... 164 1e-39 gb|AAB17900.1| (U39775) D-alanine:D-alanine ligase [Enterococcus... 164 2e-39 gb|AAB62520.1| (U91913) D-alanine:D-alanine ligase [Streptococcu... 163 2e-39 pir||S53602 carbamoyl-phosphate synthase (glutamine-hydrolyzing)... 163 2e-39 gb|AAA96435.1| (L31362) carbamyl phosphate synthetase III [Squal... 163 2e-39 sp|P20054|PYR1_DICDI PROTEIN PYR1-3 [INCLUDES: GLUTAMINE-DEPENDE... 163 2e-39 ref|NP_532764.1| (NC_003304) D-alanine:D-alanine ligase [Agrobac... 163 2e-39 ref|NP_495838.1| (NM_063437) glutamine-dependent carbamoyl-phosp... 163 3e-39 ref|NP_298089.1| (NC_002488) D-alanine--D-alanine ligase B [Xyle... 163 3e-39 gb|AAC16915.1| (U91914) D-alanine:D-alanine ligase [Streptococcu... 163 3e-39 gb|AAB62566.1| (AF006491) carbamoyl-phosphate synthetase III; CP... 163 3e-39 ref|NP_107762.1| (NC_002678) phosphoribosylamine-glycine ligase ... 163 3e-39 ref|NP_384964.1| (NC_003047) PROBABLE PHOSPHORIBOSYLAMINE--GLYCI... 162 3e-39 ref|XP_040883.1| (XM_040883) similar to CARBAMOYL-PHOSPHATE SYNT... 162 4e-39 ref|NP_503072.1| (NM_070671) Carbamoyl-phosphate synthase (CPSas... 162 4e-39 ref|NP_540436.1| (NC_003317) PHOSPHORIBOSYLAMINE-GLYCINE LIGASE ... 162 4e-39 pir||S23738 pyr1-3 protein - slime mold (Dictyostelium discoideu... 162 5e-39 ref|NP_207711.1| (NC_000915) carbamoyl-phosphate synthase (gluta... 162 5e-39 gb|AAF37344.1|AF170805_1 (AF170805) D-alanine:D-alanine ligase [... 162 7e-39 ref|NP_223571.1| (NC_000921) CARBAMOYL-PHOSPHATE SYNTHASE LARGE ... 162 7e-39 gb|AAG09178.1| (AF174494) purine biosynthetic pathway protein AD... 162 7e-39 gb|AAF37342.1|AF170803_1 (AF170803) D-alanine:D-alanine ligase [... 161 7e-39 pir||T39898 carbamoyl-phosphate synthase (glutamine-hydrolyzing)... 161 7e-39 ref|NP_377467.1| (NC_003106) 1049aa long hypothetical carbamoyl-... 161 9e-39 gb|AAF37349.1|AF170810_1 (AF170810) D-alanine:D-alanine ligase [... 161 1e-38 pir||T18410 carbamoyl-phosphate synthase (glutamine-hydrolyzing)... 161 1e-38 ref|NP_268447.1| (NC_002737) phosphoribosylamine-glycine ligase ... 160 1e-38 gb|AAB17901.1| (U39777) D-alanine:D-alanine ligase [Enterococcus... 160 1e-38 dbj|BAA94293.1| (AB029444) Carbamoyl-phosphate Synthetase [Leish... 160 1e-38 gb|AAF48639.2| (AE003503) CG18572 gene product [Drosophila melan... 160 1e-38 gb|AAK28428.1|AF251259_1 (AF251259) D-alanine-D-X ligase VanD4 [... 160 1e-38 pir||A49930 carB protein homolog - Mycobacterium bovis (strain B... 160 2e-38 gb|AAB17899.1| (U39778) D-alanine:D-alanine ligase [Enterococcus... 160 2e-38 gb|AAB62519.1| (U91912) D-alanine:D-alanine ligase [Streptococcu... 160 2e-38 sp|Q9ZF44|PUR2_LACLA PHOSPHORIBOSYLAMINE--GLYCINE LIGASE (GARS) ... 160 2e-38 emb|CAB95892.1| (AL359988) putative acetyl/propionyl CoA carboxy... 160 2e-38 ref|NP_267669.1| (NC_002662) phosphoribosylamine-glycine ligase ... 160 2e-38 pir||T30820 carbamoyl-phosphate synthase (ammonia) (EC 6.3.4.16)... 160 2e-38 sp|Q91293|CPSM_RANCA CARBAMOYL-PHOSPHATE SYNTHASE [AMMONIA], MIT... 160 2e-38 ref|NP_487550.1| (NC_003272) phosphoribosylamine--glycine ligase... 160 2e-38 gb|AAG10785.1| (AF286897) carbamoyl phosphate synthetase II [Pla... 160 2e-38 gb|AAB17897.1| (U39774) D-alanine:D-alanine ligase [Enterococcus... 159 3e-38 ref|NP_422008.1| (NC_002696) carbamoyl-phosphate synthase/carbox... 159 3e-38 gb|AAB41853.1| (U69164) D-Alanine:D-Alanine ligase [Streptococcu... 159 4e-38 sp|P21872|PUR2_CHICK TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN A... 159 4e-38 gb|AAA24785.1| (L15304) vanB2 ORF [Enterococcus faecalis] 159 4e-38 emb|CAA04374.1| (AJ000883) purD [Lactococcus lactis] 159 4e-38 ref|NP_342159.1| (NC_002754) Carbamoyl-phosphate synthase large ... 159 5e-38 sp|Q26255|PUR2_CHITE TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN A... 159 6e-38 gb|AAD18071.1| (AF129814) carbamyl phosphate synthetase II; CPS.... 158 7e-38 gb|AAG10786.1| (AF286898) carbamoyl phosphate synthetase II [Pla... 158 7e-38 ref|NP_001866.1| (NM_001875) carbamoyl-phosphate synthetase 1, m... 158 7e-38 pir||S37104 phosphoribosylamine--glycine ligase (EC 6.3.4.13) - ... 158 9e-38 gb|AAB41855.1| (U69166) D-Alanine:D-Alanine ligase [Streptococcu... 158 9e-38 emb|CAB07850.1| (Z93780) carbamoyl phosphate synthetase III [Tak... 158 9e-38 gb|AAF37348.1| (AF170809) D-alanine:D-alanine ligase [Enterococc... 157 1e-37 ref|NP_223393.1| (NC_000921) D-ALANINE--D-ALANINE LIGASE [Helico... 157 1e-37 ref|NP_421346.1| (NC_002696) D-alanine--D-alanine ligase B [Caul... 157 1e-37 gb|AAL38923.1| (AF325676) acetyl-CoA carboxylase [Lolium multifl... 157 1e-37 ref|NP_344600.1| (NC_003028) phosphoribosylamine--glycine ligase... 157 2e-37 sp|P20772|PUR2_SCHPO BIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN AD... 157 2e-37 dbj|BAB63438.1| (AB058945) phosphoribosylamine-glycine ligase [S... 157 2e-37 gb|AAB41851.1| (U69162) D-Alanine:D-Alanine ligase [Streptococcu... 156 2e-37 ref|NP_220634.1| (NC_000963) D-ALANINE--D-ALANINE LIGASE (ddlB) ... 156 3e-37 sp|P95803|DDL_STRMU PUTATIVE D-ALANINE--D-ALANINE LIGASE (D-ALAN... 156 3e-37 pir||T30518 carbamoyl-phosphate synthase (ammonia) (EC 6.3.4.16)... 156 3e-37 dbj|BAB20832.1| (AB045609) phosphoribosylamine-glycine ligase [S... 156 4e-37 Sequences not found previously or not previously below threshold: >ref|NP_454975.1| (NC_003198) D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica serovar Typhi] ref|NP_459375.1| (NC_003197) D-alanine-D-alanine ligase A [Salmonella typhimurium LT2] sp|P15051|DDLA_SALTY D-alanine--D-alanine ligase A (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) pir||CEEBDT D-alanine--D-alanine ligase (EC 6.3.2.4) A - Salmonella typhimurium gb|AAA27056.1| (M20793) D-alanine:D-alanine ligase (EC 6.3.2.4) [Salmonella typhimurium] gb|AAL19334.1| (AE008713) D-alanine-D-alanine ligase A [Salmonella typhimurium LT2] emb|CAD08835.1| (AL627266) D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica serovar Typhi] Length = 364 Score = 293 bits (750), Expect = 2e-78 Identities = 327/364 (89%), Positives = 344/364 (93%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDK+RFDVVLLGIDK GQWHV+DA NYL N Sbjct: 1 MAKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQN 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 ADDPAHIALRPSA SLAQVPGKH+HQLI+AQNGQPLPTVDVIFPIVHGTLGEDGSLQGML Sbjct: 61 ADDPAHIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 RVANLPFVGSDVL+SAACMDKDV KRLLRDAGLNIAPFITLTR NRH SFAEVES+LGL Sbjct: 121 RVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGL 180 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 PLFVKPANQGSSVGVSKV +E QY AV LAFEFDHKV+VEQGIKGREIECAVLGNDNPQ Sbjct: 181 PLFVKPANQGSSVGVSKVANEAQYQQAVALAFEFDHKVVVEQGIKGREIECAVLGNDNPQ 240 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 ASTCGEIVL S+FYAYDTKYID++GA+VVVPA I E+NDKIRAIA+QAYQTLGCAGMAR Sbjct: 241 ASTCGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMAR 300 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 VDVFLT +NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLI+RLIELALERH A+NAL Sbjct: 301 VDVFLTADNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELALERHTANNAL 360 Query: 361 KTTM 364 KTTM Sbjct: 361 KTTM 364 >ref|NP_286119.1| (NC_002655) Z0477 gene product [Escherichia coli O157:H7 EDL933] ref|NP_308458.1| (NC_002695) D-alanine-D-alanine ligase A [Escherichia coli O157:H7] ref|NP_414915.1| (NC_000913) D-alanine-D-alanine ligase A [Escherichia coli K12] sp|P23844|DDLA_ECOLI D-ALANINE--D-ALANINE LIGASE A (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||CEECDA D-alanine--D-alanine ligase (EC 6.3.2.4) A - Escherichia coli gb|AAA23671.1| (M58467) D-alanine:D-alanine ligase A [Escherichia coli] gb|AAB18104.1| (U73857) D-alanine--D-alanine ligase A [Escherichia coli] gb|AAC73484.1| (AE000144) D-alanine-D-alanine ligase A [Escherichia coli K12] gb|AAG54727.1|AE005217_5 (AE005217) Z0477 gene product [Escherichia coli O157:H7 EDL933] dbj|BAB33854.1| (AP002551) D-alanine-D-alanine ligase A [Escherichia coli O157:H7] Length = 364 Score = 292 bits (748), Expect = 3e-78 Identities = 364/364 (100%), Positives = 364/364 (100%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN Sbjct: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML Sbjct: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL Sbjct: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ Sbjct: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR Sbjct: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL Sbjct: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 Query: 361 KTTM 364 KTTM Sbjct: 361 KTTM 364 >gb|AAB17902.2| (U39790) D-alanine:D-alanine ligase [Enterococcus faecium] Length = 358 Score = 275 bits (704), Expect = 4e-73 Identities = 137/358 (38%), Positives = 212/358 (58%), Gaps = 10/358 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ +++GG+SAEHEVS+ SA ++++AI + + V L+ I K+GQW + D Sbjct: 1 MKITLLYGGRSAEHEVSILSAFSVLNAIYYNYYQVQLVFITKEGQWVKGPLLTEKPASKD 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 H++ PS + G+ ++FP++HG GEDG++QG L Sbjct: 61 VLHLSWDPSGQ------TEEGFTGKVINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETL 114 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITL---TRANRHNISFAEVESKLGL 180 N+P+VG+ VL SA MDK +TK +L+ AG+ P++ + F + E L Sbjct: 115 NMPYVGAGVLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLY 174 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+FVKPAN GSSVG++K + E+ A+ A+++D + IVEQGI+ REIE AVLGN++ + Sbjct: 175 PMFVKPANMGSSVGITKAENREELQNALATAYQYDSRAIVEQGIEAREIEVAVLGNEDVR 234 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 + GE+V FY Y+ KYI+ ++ +PA + E+ K + A AY LG +G++R Sbjct: 235 TTLPGEVVKDVAFYDYEAKYINNK-IEMQIPAEVPEEVYQKAQEYAKLAYTMLGGSGLSR 293 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 D FLT +NE+ +NE+N++PGFT SMYP LW+ GL Y DLI LI+L + R+ Sbjct: 294 CDFFLTNKNELFLNELNSMPGFTEFSMYPLLWENMGLKYGDLIEELIQLGMNRYHQRQ 351 >sp|Q47827|DDL_ENTHR D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAB17904.1| (U39788) D-alanine:D-alanine ligase [Enterococcus hirae] Length = 358 Score = 273 bits (698), Expect = 2e-72 Identities = 140/358 (39%), Positives = 210/358 (58%), Gaps = 10/358 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ +++GG+SAEH+VS+ SA ++++AI + + V L+ I K+GQW + + Sbjct: 1 MKITLLYGGRSAEHDVSVLSAFSVLNAIYYTYYQVQLIFISKEGQWVKGPLLTEKPTSKE 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 H+ PS G+ ++FP++HG GEDG++QG L Sbjct: 61 DLHLTWDPSGKV------TDGFTGRVINPGEIKEEGTIVFPVLHGPNGEDGTIQGFLETL 114 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITL---TRANRHNISFAEVESKLGL 180 NLP+VG+ VL SA MDK +TK +L+ AG+ P++ + F + E L Sbjct: 115 NLPYVGAGVLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKIFDQCEGSLLY 174 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+FVKPAN GSSVG+SK + E+ A+ LA+++D + IVEQGI+ REIE AVLGN++ + Sbjct: 175 PMFVKPANMGSSVGISKAENREELQNALALAYQYDSRAIVEQGIEAREIEVAVLGNEDVR 234 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 + GE+V FY YD KYI+ ++ +PA + E+ K + A AY LG +G++R Sbjct: 235 TTLPGEVVKDVAFYDYDAKYINNK-IEMQIPAEVPEEVYQKAQEYAKIAYTMLGGSGLSR 293 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 D FLT +NE+ +NE+NT+PGFT SMYP LW+ GL Y DLI LI+L + R Sbjct: 294 CDFFLTNKNELFLNELNTMPGFTQFSMYPLLWENMGLKYGDLIEELIQLGINRFNQRQ 351 >gb|AAG49141.1|AF215736_1 (AF215736) D-alanine:D-alanine ligase [Enterococcus faecium] Length = 358 Score = 273 bits (697), Expect = 2e-72 Identities = 136/358 (37%), Positives = 211/358 (57%), Gaps = 10/358 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ +++GG+SA HEVS+ SA ++++AI + + V L+ I K+GQW + D Sbjct: 1 MKITLLYGGRSAGHEVSILSAFSVLNAIYYNYYQVQLVFITKEGQWVKGPLLTEKPASKD 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 H++ PS + G+ ++FP++HG GEDG++QG L Sbjct: 61 VLHLSWDPSGQ------TEEGFTGKVINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETL 114 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITL---TRANRHNISFAEVESKLGL 180 N+P+VG+ VL SA MDK +TK +L+ AG+ P++ + F + E L Sbjct: 115 NMPYVGAGVLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLY 174 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+FVKPAN GSSVG++K + E+ A+ A+++D + IVEQGI+ REIE AVLGN++ + Sbjct: 175 PMFVKPANMGSSVGITKAENREELQNALATAYQYDSRAIVEQGIEAREIEVAVLGNEDVR 234 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 + GE+V FY Y+ KYI+ ++ +PA + E+ K + A AY LG +G++R Sbjct: 235 TTLPGEVVKDVAFYDYEAKYINNK-IEMQIPAEVPEEVYQKAQEYAKLAYTMLGGSGLSR 293 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 D FLT +NE+ +NE+N++PGFT SMYP LW+ GL Y DLI LI+L + R+ Sbjct: 294 CDFFLTNKNELFLNELNSMPGFTEFSMYPLLWENMGLKYGDLIEELIQLGMNRYHQRQ 351 >gb|AAK67986.1|AF297332_1 (AF297332) 3-methylcrotonyl-CoA carboxylase biotin-containing subunit [Homo sapiens] Length = 725 Score = 273 bits (697), Expect = 3e-72 Identities = 56/356 (15%), Positives = 122/356 (33%), Gaps = 22/356 (6%) Query: 13 KSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPS 72 + + + + +NI + +R ++ + + V + Y + H+ + Sbjct: 35 RQRTMKYTTATGRNITKVLIANRGEIACRVMRTAKKLGVQTVAVYSEADRNSMHVDMADE 94 Query: 73 ATSLAQVPG-KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSD 131 A S+ P + + I P G L E+ + + + F+G Sbjct: 95 AYSIGPAPSQQSYLSMEKIIQVAKTSAAQAIHPGC-GFLSENMEFAELCKQEGIIFIGPP 153 Query: 132 VLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGS 191 A K +K ++ AG+ + ++ + E ++G P+ +K G Sbjct: 154 PSAIRDMGIKSTSKSIMAAAGVPVVEGYHG--EDQSDQCLKEHARRIGYPVMIKAVRGGG 211 Query: 192 SVGVSKVTSEEQYAIAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTC 244 G+ V SE+++ ++ A D +++E+ + R +E V G+ + A Sbjct: 212 GKGMRIVRSEQEFQEQLESARREAKKSFNDDAMLIEKFVDTPRHVEVQVFGDHHGNAVYL 271 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 E K I+E I E+ K+ AV+A + + G V+ Sbjct: 272 FERD--CSVQRRHQKIIEE-----APAPGIKSEVRKKLGEAAVRAAKAVNYVGAGTVEFI 324 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + ++ E+NT + P +G + R+ + + Sbjct: 325 MDSKHNFCFMEMNTRLQVEH----PVTEMITGTDLVEWQLRIAAGEKIPLSQEEIT 376 >ref|NP_064551.2| (NM_020166) methylcrotonoyl-Coenzyme A carboxylase 1 (alpha); 3-methylcrotonyl-CoA carboxylase biotin-containing subunit [Homo sapiens] dbj|BAB14377.1| (AK023051) unnamed protein product [Homo sapiens] gb|AAG50245.1|AF310339_1 (AF310339) 3-methylcrotonyl-CoA carboxylase alpha subunit [Homo sapiens] gb|AAH04187.1|AAH04187 (BC004187) methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [Homo sapiens] gb|AAH04214.1|AAH04214 (BC004214) methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [Homo sapiens] Length = 725 Score = 273 bits (697), Expect = 3e-72 Identities = 56/356 (15%), Positives = 122/356 (33%), Gaps = 22/356 (6%) Query: 13 KSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPS 72 + + + + +NI + +R ++ + + V + Y + H+ + Sbjct: 35 RQRTMKYTTATGRNITKVLIANRGEIACRVMRTAKKLGVQTVAVYSEADRNSMHVDMADE 94 Query: 73 ATSLAQVPG-KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSD 131 A S+ P + + I P G L E+ + + + F+G Sbjct: 95 AYSIGPAPSQQSYLSMEKIIQVAKTSAAQAIHPGC-GFLSENMEFAELCKQEGIIFIGPP 153 Query: 132 VLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGS 191 A K +K ++ AG+ + ++ + E ++G P+ +K G Sbjct: 154 PSAIRDMGIKSTSKSIMAAAGVPVVEGYHG--EDQSDQCLKEHARRIGYPVMIKAVRGGG 211 Query: 192 SVGVSKVTSEEQYAIAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTC 244 G+ V SE+++ ++ A D +++E+ + R +E V G+ + A Sbjct: 212 GKGMRIVRSEQEFQEQLESARREAKKSFNDDAMLIEKFVDTPRHVEVQVFGDHHGNAVYL 271 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 E K I+E I E+ K+ AV+A + + G V+ Sbjct: 272 FERD--CSVQRRHQKIIEE-----APAPGIKSEVRKKLGEAAVRAAKAVNYVGAGTVEFI 324 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + ++ E+NT + P +G + R+ + + Sbjct: 325 MDSKHNFCFMEMNTRLQVEH----PVTEMITGTDLVEWQLRIAAGEKIPLSQEEIT 376 >dbj|BAA99407.1| (AB029826) 3-methylcrotonyl-CoA carboxylase biotin-containing subunit [Homo sapiens] gb|AAG53095.1|AF310972_1 (AF310972) 3-methylcrotonyl-CoA carboxylase alpha subunit [Homo sapiens] Length = 725 Score = 272 bits (696), Expect = 3e-72 Identities = 56/356 (15%), Positives = 122/356 (33%), Gaps = 22/356 (6%) Query: 13 KSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPS 72 + + + + +NI + +R ++ + + V + Y + H+ + Sbjct: 35 RQRTMKYTTATGRNITKVLIANRGEIACRVMRTAKKLGVQTVAVYSEADRNSMHVDMADE 94 Query: 73 ATSLAQVPG-KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSD 131 A S+ P + + I P G L E+ + + + F+G Sbjct: 95 AYSIGPAPSQQSYLSMEKIIQVAKTSAAQAIHPGC-GFLSENMEFAELCKQEGIIFIGPP 153 Query: 132 VLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGS 191 A K +K ++ AG+ + ++ + E ++G P+ +K G Sbjct: 154 PSAIRDMGIKSTSKSIMAAAGVPVVEGYHG--EDQSDQCLKEHARRIGYPVMIKAVRGGG 211 Query: 192 SVGVSKVTSEEQYAIAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTC 244 G+ V SE+++ ++ A D +++E+ + R +E V G+ + A Sbjct: 212 GKGMRIVRSEQEFQEQLESARREAKKSFNDDAMLIEKFVDTPRHVEVQVFGDHHGNAVYL 271 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 E K I+E I E+ K+ AV+A + + G V+ Sbjct: 272 FERD--CSVQRRHQKIIEE-----APAPGIKSEVRKKLGEAAVRAAKAVNYVGAGTVEFI 324 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + ++ E+NT + P +G + R+ + + Sbjct: 325 MDSKHNFCFMEMNTRLQVEH----PVTEMITGTDLVEWQLRIAAGEKIPLSQEEIT 376 >ref|NP_372607.1| (NC_002758) D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus Mu50] ref|NP_375191.1| (NC_002745) D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus N315] dbj|BAB43170.1| (AP003136) D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus N315] dbj|BAB58245.1| (AP003364) D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus Mu50] Length = 356 Score = 264 bits (674), Expect = 1e-69 Identities = 147/367 (40%), Positives = 220/367 (59%), Gaps = 15/367 (4%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K + IVFGGKSAEHEVS+ +A+N+++AIDK ++ V ++ I G W + + Sbjct: 1 MTKENICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIK 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + D H+ A ++Q+ + D +FP++HG GEDG++QG+ Sbjct: 61 STDELHLENG-EALEISQLLKESSSG----------QPYDAVFPLLHGPNGEDGTIQGLF 109 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS---FAEVESK 177 V ++P+VG+ VL++A+ MDK V K+L GL P+I+ R+ V K Sbjct: 110 EVLDVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDK 169 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 L P+FVKPAN GSSVG+SK +E + + AF+FD K+++EQG+ REIE AVLGND Sbjct: 170 LNYPVFVKPANLGSSVGISKCNNEAELKEGIKEAFQFDRKLVIEQGVNAREIEVAVLGND 229 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 P+A+ GE+V FY Y +KY D ++ +PA + ++ +R +A++A++ C+G Sbjct: 230 YPEATWPGEVVKDVAFYDYKSKYKDGK-VQLQIPADLDEDVQLTLRNMALEAFKATDCSG 288 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 + R D F+T +N++ INE N +PGFT SMYPKLW+ GL Y +LIT+LIELA ERH Sbjct: 289 LVRADFFVTEDNQIYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELAKERHQDK 348 Query: 358 NALKTTM 364 K + Sbjct: 349 QKNKYKI 355 >ref|NP_442228.1| (NC_000911) biotin carboxylase [Synechocystis sp. PCC 6803] pir||S74380 biotin carboxylase accC - Synechocystis sp. (strain PCC 6803) dbj|BAA10298.1| (D64001) biotin carboxylase [Synechocystis sp. PCC 6803] Length = 448 Score = 263 bits (672), Expect = 2e-69 Identities = 53/344 (15%), Positives = 110/344 (31%), Gaps = 22/344 (6%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-H 83 + +R ++ L I + + + + H+ L + + P Sbjct: 1 MQFAKILIANRGEIALRIIHSCEELGIPTVAVHSTIDRHALHVQLANESVCIGPPPSNKS 60 Query: 84 EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + + I P +G L E+ + + F+G A A DK Sbjct: 61 YLNIPNIIAAALTRNATAIHPG-YGFLAENARFAEICADHQITFIGPSPEAITAMGDKST 119 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 K+ ++ +G+ P + ++ +++G P+ +K G G+ V E+ Sbjct: 120 AKKTMQKSGVPCVPGSPGLI--ESEATALKIAAEIGYPVIIKATAGGGGRGMRLVQEEKD 177 Query: 204 YAIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 + A + V +E+ I+ R IE +L + + GE Sbjct: 178 FLKLFHAAQGEAGAAFGNPGVYLEKFIEKPRHIEFQILADSHGNVVHLGERD--CSIQRR 235 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEI 316 K ++E + P + K+ AV+A +++ G V+ + E+ Sbjct: 236 HQKLLEE-----APSPFLTPHLRKKMGEAAVKAAKSINYVGAGTVEFLVDGNGNFYFMEM 290 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 NT + P +G R+ R + Sbjct: 291 NTRIQVEH----PVTEMITGYDLISEQIRIAMGEKLRFRQSDVE 330 >ref|NP_388337.1| (NC_000964) D-alanyl-D-alanine ligase A [Bacillus subtilis] sp|P96612|DDL_BACSU D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||D69613 D-alanine--D-alanine ligase (EC 6.3.2.4) A ddlA - Bacillus subtilis dbj|BAA19293.1| (AB001488) PROBABLE D-ALANINE--D-ALANINE LIGASE A [Bacillus subtilis] emb|CAB12263.1| (Z99106) D-alanyl-D-alanine ligase A [Bacillus subtilis] Length = 354 Score = 261 bits (666), Expect = 9e-69 Identities = 152/357 (42%), Positives = 217/357 (60%), Gaps = 8/357 (2%) Query: 10 FGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIAL 69 +GGKSAEH VSLQ+A ++ A++ +FD+ + I ++G+W ++ Sbjct: 2 YGGKSAEHNVSLQTALAVIKALNTEKFDIHPIYITEKGEWVRGARLTEPVSNVKMLQFEQ 61 Query: 70 RPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVG 129 SA P ++ + Q +DV+FP++HG GEDG++QGML + N+P+VG Sbjct: 62 GGSA----FSPAALNQEMFPQEASQQNEAIDVVFPLLHGPNGEDGTIQGMLELLNIPYVG 117 Query: 130 SDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRH---NISFAEVESKLGLPLFVKP 186 + VLAS+A MDK V K L GL A + + + S EVE +LG P FVKP Sbjct: 118 NGVLASSAGMDKVVMKHLFAQVGLAQAKYAAFLKKDWTRSPKESCEEVEQELGYPCFVKP 177 Query: 187 ANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTCGE 246 AN GSSVG+SK + E+ A +LAF++D KV+VE+GI GREIE VLGND+P+ S GE Sbjct: 178 ANLGSSVGISKCRNREELQKAFELAFQYDRKVVVEEGINGREIEIGVLGNDDPKCSVVGE 237 Query: 247 IVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT 306 I +DFY Y KY D D + +PA + E I +A++A++ + +G+ R D FLT Sbjct: 238 IAPKTDFYDYKAKYEDGDTDLM-IPAIVTDEEYATISDMAIKAFKAIDGSGLVRADFFLT 296 Query: 307 PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALKTT 363 + EV+INE+NT+PGFT SM+P LW+ +G+ Y DLI +L+ELA ERHA +K T Sbjct: 297 ADGEVLINEVNTMPGFTPFSMFPLLWKEAGVEYADLIEQLVELAKERHAEKQLIKHT 353 >gb|AAB88214.1| (U59234) biotin carboxylase [Synechococcus sp. PCC 7942] Length = 453 Score = 259 bits (663), Expect = 2e-68 Identities = 55/340 (16%), Positives = 111/340 (32%), Gaps = 22/340 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKHEHQL 87 + +R ++ L + + + + + + H+ L A + + K + Sbjct: 5 KILIANRGEIALRILRTCEELGIGTIAVHSTVDRNALHVQLADEAVCIGEAASSKSYLNI 64 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + I P +G L E+ + +L F+G + A DK K Sbjct: 65 PNIIAAALTRNASAIHPG-YGFLAENARFAEICADHHLTFIGPSPDSIRAMGDKSTAKET 123 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 ++ G+ P + S A+V +++G P+ +K G G+ V Sbjct: 124 MQRVGVPTIPGSDGLLTD--VDSAAKVAAEIGYPVMIKATAGGGGRGMRLVREPADLEKL 181 Query: 208 V------DLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A + + +E+ I R +E +L + GE K Sbjct: 182 FLAAQGEAEAAFGNPGLYLEKFIDRPRHVEFQILADAYGNVVHLGERD--CSIQRRHQKL 239 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E A++ ++ K+ AV+ Q +G G V+ + E+NT Sbjct: 240 LEE-----APSPALSADLRQKMGDAAVKVAQAIGYIGAGTVEFLVDATGNFYFMEMNTRI 294 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + P +GL R+ + R + Sbjct: 295 QVEH----PVTEMITGLDLIAEQIRIAQGEALRFRQADIQ 330 >ref|NP_539980.1| (NC_003317) BIOTIN CARBOXYLASE [Brucella melitensis] gb|AAL52244.1| (AE009546) BIOTIN CARBOXYLASE [Brucella melitensis] Length = 459 Score = 259 bits (663), Expect = 2e-68 Identities = 60/343 (17%), Positives = 113/343 (32%), Gaps = 23/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKH-E 84 + +R ++ L + + + + + D H+ L + + P + Sbjct: 8 MFQKILIANRGEIALRVLRACKELGIKTVAVHSTADADAMHVRLADESVCIGPPPSRDSY 67 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + D I P +G L E+ +L ++ F+G DK Sbjct: 68 LNIHQIVAACEITGADAIHPG-YGFLSENAKFAEILEAHDITFIGPTASHIRIMGDKIEA 126 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 KR + G+ + P + + + ++G P+ +K + G G+ S E+ Sbjct: 127 KRTAKRLGIPVVPGSDGGVTDEVEAA--RIAKEIGYPVIIKASAGGGGRGMKVARSAEEL 184 Query: 205 AIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 IA+ A D V +E+ ++ R IE V+G+ A GE Sbjct: 185 PIALATARSEAGAAFGDDAVYIEKYLEKPRHIEVQVMGDGAGNAVHLGERD--CSLQRRH 242 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K +E A+ E +KI I A LG G ++ + E E+N Sbjct: 243 QKVWEEGN-----SPALNAEAREKIGMICANACAELGYRGAGTIEFLY-EDGEFYFIEMN 296 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P +G+ R+ + Sbjct: 297 TRLQVEH----PVTEAITGIDLVHEQIRVAAGLGLSVKQKDIR 335 >ref|NP_266497.1| (NC_002662) D-alanine-D-alanine ligase (EC 6.3.2.4) [Lactococcus lactis subsp. lactis] sp|Q9CIL5|DDL_LACLA D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAK04439.1|AE006271_2 (AE006271) D-alanine-D-alanine ligase (EC 6.3.2.4) [Lactococcus lactis subsp. lactis] Length = 349 Score = 256 bits (653), Expect = 3e-67 Identities = 126/359 (35%), Positives = 203/359 (56%), Gaps = 15/359 (4%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K + +++GG+SAE EVS+ SA++++ A++ SRF V I K G++ + Sbjct: 1 MSKETLILLYGGRSAEREVSVLSAESVMRAVNYSRFVVKTYFITKGGEFIKTQEFTDKPA 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 ++ + V+FP++HG +GEDGS+QG L Sbjct: 61 EEEKLLTNDLAESYP-------------KISPAAIYEKAAVVFPVLHGPMGEDGSIQGFL 107 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + L +VG ++L++++ MDK + K + G+ P++ EV KL Sbjct: 108 EILRLAYVGPNILSASSTMDKLLAKHVFEAVGVPQVPYVAAFADENQGEIAQEVVEKLEF 167 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-NP 239 P+FVKPAN GSSVG+SKV A+ A+++D++V++EQG+ REIECAVLGN+ + Sbjct: 168 PVFVKPANMGSSVGISKVDDLADLQPALSEAYKYDNRVVIEQGVDAREIECAVLGNNSDV 227 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 A+ GE+V +FY Y++KYID ++ +PA + ++ K++ A++AY+ + G++ Sbjct: 228 SATLPGEVVKDVEFYDYNSKYIDNK-IQMDIPAKVPADLAQKMQEYAIKAYKAVNGTGLS 286 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 R D F+T + V +NEIN +PGFT SMYP LW+ GL Y+DLI +L++LA E Sbjct: 287 RCDFFVTKDGNVYLNEINAIPGFTQWSMYPLLWENMGLSYSDLIEKLVDLAKETFETRE 345 >ref|NP_484982.1| (NC_003272) biotin carboxylase [Nostoc sp. PCC 7120] sp|Q06862|ACCC_ANASP BIOTIN CARBOXYLASE (A SUBUNIT OF ACETYL-COA CARBOXYLASE (ACC) pir||A53311 biotin carboxylase (EC 6.3.4.14) - Anabaena sp. (strain PCC 7120) gb|AAB51770.1| (L14862) biotin carboxylase [Anabaena sp.] dbj|BAB72896.1| (AP003584) biotin carboxylase [Nostoc sp. PCC 7120] Length = 447 Score = 256 bits (653), Expect = 3e-67 Identities = 56/341 (16%), Positives = 114/341 (33%), Gaps = 22/341 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA-QVPGKHEH 85 + +R ++ L + + ++ + + + H+ L A + K Sbjct: 3 FDKILIANRGEIALRILRACEEMGIATIAVHSTVDRNALHVQLADEAVCIGEPASAKSYL 62 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + + I P +G L E+ + ++ F+G A DK K Sbjct: 63 NIPNIIAAALTRNASAIHPG-YGFLSENAKFAEICADHHIAFIGPTPEAIRLMGDKSTAK 121 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 ++ AG+ P E+ +G P+ +K G G+ V S +++ Sbjct: 122 ETMQKAGVPTVPGSEGLV--ETEQEGLELAKDIGYPVMIKATAGGGGRGMRLVRSPDEFV 179 Query: 206 IAV------DLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A + V +E+ I+ R IE +L ++ GE + Sbjct: 180 KLFLAAQGEAGAAFGNAGVYIEKFIERPRHIEFQILADNYGNVIHLGERD--CSIQRRNQ 237 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K ++E A+ ++ +K+ AV+A Q + G ++ L + E+NT Sbjct: 238 KLLEE-----APSPALDSDLREKMGQAAVKAAQFINYTGAGTIEFLLDRSGQFYFMEMNT 292 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 + P +G+ R+ + R D Sbjct: 293 RIQVEH----PVTEMVTGVDLLVEQIRIAQGERLRLTQDQV 329 >ref|NP_076133.1| (NM_023644) methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [Mus musculus] gb|AAG50244.1|AF310338_1 (AF310338) 3-methylcrotonyl-CoA carboxylase alpha subunit [Mus musculus] Length = 717 Score = 256 bits (653), Expect = 4e-67 Identities = 58/354 (16%), Positives = 118/354 (32%), Gaps = 22/354 (6%) Query: 15 AEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSAT 74 + +I + +R ++ I + V + Y + H+ + A Sbjct: 33 RTMKYGTTPGGSITKVLIANRGEIACRVIRTAKKMGVQSVAVYSEADRNSMHVDMADEAY 92 Query: 75 SLAQVPG-KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVL 133 S+ P + + I P +G L E+ + + + F+G Sbjct: 93 SIGPAPSQQSYLAMEKIIQVAKSSAAQAIHPG-YGFLSENMEFAELCKQEGIIFIGPPSS 151 Query: 134 ASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSV 193 A K +K ++ AG+ + ++ + E K+G P+ +K G Sbjct: 152 AIRDMGIKSTSKSIMAAAGVPVVEGYHG--KDQSDQCLREHAGKIGYPVMIKAVRGGGGK 209 Query: 194 GVSKVTSEEQYAIAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGE 246 G+ V SE ++ ++ A D +++E+ + R +E V G+ + A E Sbjct: 210 GMRIVRSEREFQEQLESARREAKKSFNDDAMLIEKFVDTPRHVEVQVFGDHHGNAVYLFE 269 Query: 247 IVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT 306 K I+E I PE+ K+ AV+A + + G V+ + Sbjct: 270 RD--CSVQRRHQKIIEE-----APAPGINPEVRRKLGEAAVRAAKAVKYVGAGTVEFIMD 322 Query: 307 PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + E+NT + P +G + R+ + + Sbjct: 323 SRHNFYFMEMNTRLQVEH----PVTEMITGTDLVEWQLRIAAGEKIPLSQEEIP 372 >emb|CAB64487.1| (AJ243059) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 255 bits (652), Expect = 4e-67 Identities = 130/358 (36%), Positives = 204/358 (56%), Gaps = 14/358 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A++ +RF V I + G + + + + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVNYNRFTVKTFFISQSGDFIKTQEFSQTPGQE 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D V+FP++HG +GEDGS+QG L V Sbjct: 62 DRLMT-------------NATIDWDKQVVPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEV 108 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P+ Sbjct: 109 LKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPV 168 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 F KP+N GSSVG+SK ++E+ A+ LAF++D +V+VEQG+ REIE +LGN + +++ Sbjct: 169 FTKPSNMGSSVGISKSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKST 228 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G++R D Sbjct: 229 LPGEVVKDVAFYDYDAKYIDNK-ITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCD 287 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 F T + E+ +NE+NT+PGFT SMYP LW G+ Y+DLI L++LA + A Sbjct: 288 FFYTDKGEIFLNELNTMPGFTQWSMYPLLWDNMGISYSDLIEHLVDLAKQSFDKREAH 345 >dbj|BAB25253.1| (AK007782) putative [Mus musculus] Length = 717 Score = 255 bits (652), Expect = 4e-67 Identities = 58/354 (16%), Positives = 118/354 (32%), Gaps = 22/354 (6%) Query: 15 AEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSAT 74 + +I + +R ++ I + V + Y + H+ + A Sbjct: 33 RTMKYGTTPGGSITKVLIANRGEIACRVIRTAKKMGVQSVAVYSEADRNSMHVDMADEAY 92 Query: 75 SLAQVPG-KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVL 133 S+ P + + I P +G L E+ + + + F+G Sbjct: 93 SIGPAPSQQSYLAMEKIIQVAKSSAAQAIHPG-YGFLSENMEFAELCKQEGIIFIGPPSS 151 Query: 134 ASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSV 193 A K +K ++ AG+ + ++ + E K+G P+ +K G Sbjct: 152 AIRDMGIKSTSKSIMAAAGVPVVEGYHG--KDQSDQCLREHAGKIGYPVMIKAVRGGGGK 209 Query: 194 GVSKVTSEEQYAIAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGE 246 G+ V SE ++ ++ A D +++E+ + R +E V G+ + A E Sbjct: 210 GMRIVRSEREFQEQLESARREAKKSFNDDAMLIEKFVDTPRHVEVQVFGDHHGNAVYLFE 269 Query: 247 IVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT 306 K I+E I PE+ K+ AV+A + + G V+ + Sbjct: 270 RD--CSVQRRHQKIIEE-----APAPGINPEVRRKLGEAAVRAAKAVKYVGAGTVEFIMD 322 Query: 307 PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + E+NT + P +G + R+ + + Sbjct: 323 SRHNFYFMEMNTRLQVEH----PVTEMITGTDLVEWQLRIAAGEKIPLSQEEIP 372 >emb|CAB64463.1| (AJ243053) D-ala,D-ala ligase [Streptococcus pneumoniae] emb|CAB64467.1| (AJ243054) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 255 bits (652), Expect = 5e-67 Identities = 131/358 (36%), Positives = 204/358 (56%), Gaps = 14/358 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A++ RF V I + G + ++ + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDSIKTQEFSHAPGQE 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D + V+FP++HG +GEDGS+QG L V Sbjct: 62 DRLMT-------------NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEV 108 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P+ Sbjct: 109 LKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPV 168 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +LGN + +++ Sbjct: 169 FTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKST 228 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G++R D Sbjct: 229 LPGEVVKDVAFYDYDAKYIDNK-VTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCD 287 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 F T + E+ +NE+NT+PGFT SMYP LW+ G+ Y +LI RL++LA E A Sbjct: 288 FFYTDKGEIFLNELNTMPGFTQWSMYPLLWENMGISYPELIERLVDLAKESFDKREAH 345 >ref|NP_346110.1| (NC_003028) D-alanine--D-alanine ligase [Streptococcus pneumoniae TIGR4] gb|AAK75750.1| (AE007460) D-alanine--D-alanine ligase [Streptococcus pneumoniae TIGR4] Length = 347 Score = 255 bits (652), Expect = 5e-67 Identities = 132/358 (36%), Positives = 204/358 (56%), Gaps = 14/358 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A+D RF V I + G + + ++ + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQE 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D + V+FP++HG +GEDGS+QG L V Sbjct: 62 DRLMT-------------NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEV 108 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P+ Sbjct: 109 LKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPV 168 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +LGN + +++ Sbjct: 169 FTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKST 228 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 GE+V FY YD KYID + + +PA I+ ++ +R A A++ +G G++R D Sbjct: 229 LPGEVVKDVAFYDYDAKYIDNN-ITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCD 287 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 F T + E+ +NE+NT+PGFT SMYP LW G+ Y LI RL++LA E A Sbjct: 288 FFYTDKGEIFLNELNTMPGFTQWSMYPLLWDNMGISYPKLIERLVDLAKESFDKREAH 345 >emb|CAB64459.1| (AJ243052) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 255 bits (651), Expect = 6e-67 Identities = 131/358 (36%), Positives = 203/358 (56%), Gaps = 14/358 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A++ RF V I + G + ++ + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDSIKTQEFSHAPGQE 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D + V+FP++HG +GEDGS+QG L V Sbjct: 62 DRLMT-------------NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEV 108 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P+ Sbjct: 109 LKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPV 168 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +LGN + +++ Sbjct: 169 FTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKST 228 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G++R D Sbjct: 229 LPGEVVKDVAFYDYDAKYIDNK-VTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCD 287 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 F T + E+ +NE+NT+PGFT SMYP LW G+ Y +LI RL++LA E A Sbjct: 288 FFYTDKGEIFLNELNTMPGFTQWSMYPLLWDNMGISYPELIERLVDLAKESFDKREAH 345 >sp|O54631|DDL_STRPN D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAC95435.1| (AF068901) D-Ala-D-Ala ligase [Streptococcus pneumoniae] Length = 347 Score = 255 bits (651), Expect = 6e-67 Identities = 131/358 (36%), Positives = 204/358 (56%), Gaps = 14/358 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A++ RF V I + G + + ++ + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSHAPGQE 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D + V+FP++HG +GEDGS+QG L V Sbjct: 62 DRLMT-------------NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEV 108 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P+ Sbjct: 109 LKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPV 168 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +LGN + +++ Sbjct: 169 FTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKST 228 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G++R D Sbjct: 229 LPGEVVKDVAFYDYDAKYIDNK-ITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCD 287 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 F T + E+ +NE+NT+PGFT SMYP LW G+ Y +LI RL++LA E A Sbjct: 288 FFYTDKGEIFLNELNTMPGFTQWSMYPLLWDNMGISYPELIERLVDLAKESFDKREAH 345 >ref|NP_359108.1| (NC_003098) D-alanine-D-alanine ligase [Streptococcus pneumoniae R6] gb|AAL00319.1| (AE008520) D-alanine-D-alanine ligase [Streptococcus pneumoniae R6] Length = 347 Score = 254 bits (650), Expect = 6e-67 Identities = 132/358 (36%), Positives = 205/358 (56%), Gaps = 14/358 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A+D RF V I + G + + ++ + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQE 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D + V+FP++HG +GEDGS+QG L V Sbjct: 62 DRLMT-------------NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEV 108 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P+ Sbjct: 109 LKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPV 168 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +LGN + +++ Sbjct: 169 FTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKST 228 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G++R D Sbjct: 229 LPGEVVKDVAFYDYDAKYIDNK-VTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCD 287 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 F T + E+ +NE+NT+PGFT SMYP LW+ G+ Y +LI RL++LA E A Sbjct: 288 FFYTDKGEIFLNELNTMPGFTQWSMYPLLWENMGISYPELIERLVDLAKESFDKREAH 345 >emb|CAB64475.1| (AJ243056) D-ala,D-ala ligase [Streptococcus pneumoniae] emb|CAB64479.1| (AJ243057) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 254 bits (649), Expect = 1e-66 Identities = 132/358 (36%), Positives = 204/358 (56%), Gaps = 14/358 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A+D RF V I + G + + ++ + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQE 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D + V+FP++HG +GEDGS+QG L V Sbjct: 62 DRLMT-------------NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEV 108 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P+ Sbjct: 109 LKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPV 168 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +LGN + +++ Sbjct: 169 FTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKST 228 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G++R D Sbjct: 229 LPGEVVKDVAFYDYDAKYIDNK-ITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCD 287 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 F T + E+ +NE+NT+PGFT SMYP LW G+ Y +LI RL++LA E A Sbjct: 288 FFYTDKGEIFLNELNTMPGFTQWSMYPLLWDNMGISYPELIERLVDLAKESFDKREAH 345 >emb|CAB64471.1| (AJ243055) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 254 bits (648), Expect = 1e-66 Identities = 130/358 (36%), Positives = 202/358 (56%), Gaps = 14/358 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A++ RF V I + G + + + + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQE 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D V+FP++HG +GEDGS+QG L V Sbjct: 62 DRLMT-------------NATIDWDKKVAPSAIYEEEAVVFPVLHGPMGEDGSVQGFLEV 108 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+VG ++L+S+ MDK TKR+L G+ P++ + + AEVE KL P+ Sbjct: 109 LKMPYVGCNILSSSLAMDKITTKRVLESTGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPV 168 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 F KP+N GSSVG+SK ++E+ A+ LAF++D +V+VEQG+ REIE +LGN + +++ Sbjct: 169 FTKPSNMGSSVGISKSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKST 228 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G++R D Sbjct: 229 LPGEVVKDVAFYDYDAKYIDNK-ITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCD 287 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 F T + E+ +NE+NT+PGFT SMYP LW G+ Y +LI RL++LA E A Sbjct: 288 FFYTDKGEIFLNELNTMPGFTQWSMYPLLWDNMGISYPELIERLVDLAKESFDKREAH 345 >ref|NP_389369.1| (NC_000964) pyruvate carboxylase [Bacillus subtilis] pir||F69685 pyruvate carboxylase (EC 6.4.1.1) pycA [similarity] - Bacillus subtilis emb|CAB13359.1| (Z99111) pyruvate carboxylase [Bacillus subtilis] Length = 1148 Score = 253 bits (646), Expect = 2e-66 Identities = 57/344 (16%), Positives = 109/344 (31%), Gaps = 25/344 (7%) Query: 23 SAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ--VP 80 S ++I + +R ++ + + ++ + Y H A + + P Sbjct: 2 SQQSIQKVLVANRGEIAIRIFRACTELNIRTVAVYSKEDSGSYHRYKADEAYLVGEGKKP 61 Query: 81 GKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMD 140 + + VD I P +G L E+ + F+G D Sbjct: 62 IDAYLDIEGIIDIAKRNKVDAIHPG-YGFLSENIHFARRCEEEGIVFIGPKSEHLDMFGD 120 Query: 141 KDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTS 200 K + AG+ + P + + G P+ +K + G G+ V S Sbjct: 121 KVKAREQAEKAGIPVIPGSDG--PAETLEAVEQFGQANGYPIIIKASLGGGGRGMRIVRS 178 Query: 201 EEQYAIAVDL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDF 253 E + A + A + +V VE+ I + IE V+G+ E Sbjct: 179 ESEVKEAYERAKSEAKAAFGNDEVYVEKLIENPKHIEVQVIGDKQGNVVHLFERD--CSV 236 Query: 254 YAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVI 313 K I+ V +++PE+ D+I AV + + V+ + NE Sbjct: 237 QRRHQKVIE-----VAPSVSLSPELRDQICEAAVALAKNVNYINAGTVEFLV-ANNEFYF 290 Query: 314 NEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 E+N + +G+ L+ H+ Sbjct: 291 IEVNPRVQVEHT----ITEMITGVDIVQTQI-LVAQGHSLHSKK 329 >gb|AAF80469.1|AF163150_1 (AF163150) acetyl-CoA carboxylase [Glycine max] Length = 539 Score = 253 bits (646), Expect = 2e-66 Identities = 59/350 (16%), Positives = 117/350 (32%), Gaps = 20/350 (5%) Query: 17 HEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSL 76 H +L + + + +R ++ + I + + + Y D H+ L A + Sbjct: 62 HCGALHATCSGDKILIANRGEIAVRVIRTAHELGIPCVAVYSTIDKDALHVKLADEAVCI 121 Query: 77 AQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASA 136 + P + LI + + +G L E+ M R + F+G + + Sbjct: 122 GEAPSSQSYLLIPNVLSAAISRRCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIR 181 Query: 137 ACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVS 196 DK + ++ AG+ P + + +++G P+ +K G G+ Sbjct: 182 VMGDKATARETMKKAGVPTVPGSDGLL--QSTEEAIRLANEIGFPVMIKATAGGGGRGMR 239 Query: 197 KVTSEEQYAIAVDL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVL 249 + + A + V +E+ I R IE VL + GE Sbjct: 240 LAKEPAELVKFLQQAKSEAAAAFGNDGVYLEKYIQNPRHIEFQVLADKYGNVVHFGERD- 298 Query: 250 TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPEN 309 + K ++E A+ PE+ + AV A ++G G+ V+ L Sbjct: 299 -CSIQRRNQKLLEE-----APSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERG 352 Query: 310 EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 E+NT + P S + R+ R+ ++ Sbjct: 353 SFYFMEMNTRIQVEH----PVTEMISSTDLIEEQIRVAMGEKLRYKQEDI 398 >pir||T07093 acetyl-CoA carboxylase (EC 6.4.1.2) biotin carboxylase chain precursor - soybean gb|AAC02267.1| (AF007100) biotin carboxylase precursor [Glycine max] gb|AAF80468.1|AF163149_1 (AF163149) acetyl-CoA carboxylase [Glycine max] Length = 539 Score = 253 bits (645), Expect = 2e-66 Identities = 58/350 (16%), Positives = 119/350 (33%), Gaps = 20/350 (5%) Query: 17 HEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSL 76 H +L + + + +R ++ + I + + + Y D H+ L A + Sbjct: 62 HCGALHATCSGDKILIANRGEIAVRVIRTAHELGIPCVAVYSTIDKDALHVKLADEAVCI 121 Query: 77 AQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASA 136 + P + LI + + +G L E+ M R + F+G + + Sbjct: 122 GEAPSSQSYLLIPNVLSAAISRRCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIR 181 Query: 137 ACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVS 196 DK + ++ AG+ P + + +++G P+ +K G G+ Sbjct: 182 VMGDKATARETMKKAGVPTVPGSDGLL--QSTEEAIRLANEIGFPVMIKATAGGGGRGMR 239 Query: 197 KVTSEEQYAIAVDL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVL 249 +++ + A + V +E+ I R IE VL + GE Sbjct: 240 LAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYIQNPRHIEFQVLADKYGNVVHFGERD- 298 Query: 250 TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPEN 309 + K ++E A+ PE+ + AV A ++G G+ ++ L Sbjct: 299 -CSIQRRNQKLLEE-----APSPALTPELRKAMGDAAVAAAASIGYIGVGTIEFLLDERG 352 Query: 310 EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 E+NT + P S + R+ R+ ++ Sbjct: 353 SFYFMEMNTRIQVEH----PVTEMISSTDLIEEQIRVAMGEKLRYKQEDI 398 >ref|NP_269512.1| (NC_002737) putative D-ala,D-ala ligase [Streptococcus pyogenes] [Streptococcus pyogenes M1 GAS] gb|AAK34233.1| (AE006579) putative D-ala,D-ala ligase [Streptococcus pyogenes M1 GAS] Length = 348 Score = 253 bits (645), Expect = 3e-66 Identities = 124/360 (34%), Positives = 199/360 (54%), Gaps = 14/360 (3%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K + +++GG+SAE EVS+ SA++++ A++ +F V I + GQ+ + + + Sbjct: 1 MSKQTLVLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQMGQFIKTQQFSEKPS 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + + + V+FP++HG +GEDGS+QG L Sbjct: 61 ESERLMT-------------NETIELTQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFL 107 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 V +P++G++V++S+ MDK TKR+L G+ + E ++L Sbjct: 108 EVLRMPYIGTNVMSSSIAMDKITTKRVLESIGIPQVAYTVYIDGQDLEACLVETLARLTF 167 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+FVKPAN GSSVG+SK ++ + A+ LA +D +V++EQG+ REIE +LGND + Sbjct: 168 PIFVKPANMGSSVGISKAQTKVELRKAIQLALTYDSRVLIEQGVVAREIEVGLLGNDKVK 227 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 ++ GE++ DFY Y KY+D + +PA + I ++R+ A A++ LG G++R Sbjct: 228 STLPGEVIKDVDFYDYQAKYVDNK-ITMAIPADVDQSIVTEMRSYAEVAFKALGGCGLSR 286 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 D FLT + +V +NE+NT+PGFT SMYP LW+ GL Y DLI L+ LA E + Sbjct: 287 CDFFLTQDGQVYLNELNTMPGFTQWSMYPLLWENMGLAYPDLIEELVTLAQEMFDQRESH 346 >pir||T06279 acetyl-CoA carboxylase (EC 6.4.1.2), biotin carboxylase chain precursor - soybean gb|AAC23573.1| (AF068249) biotin carboxylase precursor [Glycine max] Length = 539 Score = 252 bits (644), Expect = 3e-66 Identities = 59/350 (16%), Positives = 118/350 (32%), Gaps = 20/350 (5%) Query: 17 HEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSL 76 H +L + + + +R ++ + I + + + Y D H+ L A + Sbjct: 62 HCGALHATCSGDKILIANRGEIAVRVIRTAHELGIPCVAVYSTIDKDALHVKLADEAVCI 121 Query: 77 AQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASA 136 + P + LI + + +G L E+ M R + F+G + + Sbjct: 122 GEAPSSQSYLLIPNVLSAAISRRCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIR 181 Query: 137 ACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVS 196 DK + ++ AG+ P + + +++G P+ +K G G+ Sbjct: 182 VMGDKATARETMKKAGVPTVPGSDGLL--QSTEEAIRLANEIGFPVMIKATAGGGGRGMR 239 Query: 197 KVTSEEQYAIAVDL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVL 249 ++ + A + V +E+ I R IE VL + GE Sbjct: 240 LAKEPAEFVKFLQQAKSEAAAAFGNDGVYLEKYIQNPRHIEFQVLADKYGNVVHFGERD- 298 Query: 250 TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPEN 309 + K ++E A+ PE+ + AV A ++G G+ V+ L Sbjct: 299 -CSIQRRNQKLLEE-----APSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERG 352 Query: 310 EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 E+NT + P S + R+ R+ ++ Sbjct: 353 SFYFMEMNTRIQVEH----PVTEMISSTDLIEEQIRVAMGEKLRYKQEDI 398 >ref|NP_102052.1| (NC_002678) biotin carboxylase [Mesorhizobium loti] dbj|BAB47838.1| (AP002994) biotin carboxylase [Mesorhizobium loti] Length = 447 Score = 252 bits (644), Expect = 4e-66 Identities = 57/343 (16%), Positives = 110/343 (31%), Gaps = 23/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKH-E 84 + +R ++ L + + + + D H+ L + + P + Sbjct: 1 MFQKILIANRGEIALRVLRACKELGIQTVVVHSTADADAMHVRLADESVCIGPPPSRDSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + D + P +G L E+ +L N+ F+G DK Sbjct: 61 LNIHQIVAACEITGADAVHPG-YGFLSENAKFADILAAHNITFIGPSGDHIRIMGDKIEA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 KR + G+ + P + +++G P+ +K + G G+ SE Sbjct: 120 KRTAKRLGIPVVPGSDGAVTEE--KEAKRIAAEIGYPVIIKASAGGGGRGMKVAHSEADL 177 Query: 205 AIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 +A+ A D V +E+ ++ R IE V G+ + GE Sbjct: 178 EVALQTARSEAGAAFGDDAVYIEKYLQKPRHIEVQVFGDGFGRGVHFGERD--CSLQRRH 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K +E A+ E +I I +A LG +G ++ E E+N Sbjct: 236 QKVWEE-----ANSPALNAEERSRIGGICAKAIADLGYSGAGTIEFLY-ENGEFYFIEMN 289 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P +G+ R+ ++ Sbjct: 290 TRLQVEH----PVTEAITGIDLVHEQIRVASGGGLSVKQEDIK 328 >sp|P25051|VANA_ENTFC VANCOMYCIN/TEICOPLANIN A-TYPE RESISTANCE PROTEIN VANA (VANA LIGASE) (D-ALANINE--D-LACTATE LIGASE) pir||CESOVM vancomycin resistance protein vanA - Enterococcus faecium plasmid pIP816 emb|CAA40215.1| (X56895) VANA ligase [Enterococcus faecium] gb|AAA65956.1| (M97297) vanA [Transposon Tn1546] Length = 343 Score = 252 bits (643), Expect = 4e-66 Identities = 131/356 (36%), Positives = 200/356 (55%), Gaps = 20/356 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I I+K +++ + +GI K G W + + Sbjct: 1 MNRIKVAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNG-QPLPTVDVIFPIVHGTLGEDGSLQGM 119 D+ S P K H L+ +N + VDV F +HG GEDGS+QG+ Sbjct: 61 NDN---------CYSAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +PFVG D+ +SA CMDK +T + ++AG+ F + + +R V + Sbjct: 112 FELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRP------VAATFT 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GV KV S ++ A++ A ++D K+++EQ + G E+ CAVLGN Sbjct: 166 YPVFVKPARSGSSFGVKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAA 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDG---AKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L + + E G A + VPA ++ E +I+ A + Y+ LGC Sbjct: 226 LVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETAKKIYKALGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 G+ARVD+FL +V+NE+NTLPGFT+ S YP++ A+G+ +LI RLI LAL Sbjct: 286 RGLARVDMFLQDNGRIVLNEVNTLPGFTSYSRYPRMMAAAGIALPELIDRLIVLAL 341 >pir||T02431 acetyl-CoA carboxylase (EC 6.4.1.2), biotin carboxylase - common tobacco gb|AAC41659.1| (L38260) biotin carboxylase subunit [Nicotiana tabacum] prf||2118337A Ac-CoA carboxylase:SUBUNIT=biotin carboxylase [Nicotiana tabacum] Length = 536 Score = 251 bits (640), Expect = 9e-66 Identities = 57/354 (16%), Positives = 122/354 (34%), Gaps = 20/354 (5%) Query: 13 KSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPS 72 KS+ +L + + +R ++ + I + + + Y D H+ L Sbjct: 57 KSSTRGGALAATCRAEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADE 116 Query: 73 ATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDV 132 + + + P + +I + + +G L E+ M R + F+G + Sbjct: 117 SVCIGEAPSNQSYLVIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNP 176 Query: 133 LASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSS 192 + DK + +++AG+ P + + ++G P+ +K G Sbjct: 177 DSIRVMGDKSTARDTMKNAGVPTVPGSDGLL--QSTEEGVRLAEEIGYPVMIKATAGGGG 234 Query: 193 VGVSKVTSEEQYAIAVDL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCG 245 G+ +++ + A + V +E+ + R IE VL + G Sbjct: 235 RGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFG 294 Query: 246 EIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFL 305 E + K ++E A+ PE+ + + AV A ++G G+ V+ L Sbjct: 295 ERD--CSIQRRNQKLLEE-----APSPALTPELRNAMGDAAVAAAASIGYIGVGTVEFLL 347 Query: 306 TPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 E+NT + P S + + R+ R+ ++ Sbjct: 348 DERGSFYFMEMNTRIQVEH----PVTEMISSVDLIEEQIRVAMGEKLRYKQEDI 397 >emb|CAB63849.1| (AJ243051) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 251 bits (640), Expect = 1e-65 Identities = 130/358 (36%), Positives = 204/358 (56%), Gaps = 14/358 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A+D RF V I + G + + ++ + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQE 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D + V+FP++HG +GEDGS+QG L V Sbjct: 62 DRLMT-------------NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEV 108 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P+ Sbjct: 109 LKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPV 168 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 F KP+N G SVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +LGN + +++ Sbjct: 169 FTKPSNMGCSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKST 228 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G++R + Sbjct: 229 LPGEVVKDVAFYDYDAKYIDNK-VTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCN 287 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 F T + E+ +NE+NT+PGFT SMYP LW+ G+ Y +LI RL++LA E A Sbjct: 288 FFYTDKGEIFLNELNTMPGFTQWSMYPLLWENMGISYPELIERLVDLAKESFDKREAH 345 >ref|NP_464381.1| (NC_003210) D-alanine--D-alanine ligase [Listeria monocytogenes EGD-e] emb|CAC98933.1| (AL591977) D-alanine--D-alanine ligase [Listeria monocytogenes] Length = 370 Score = 250 bits (639), Expect = 1e-65 Identities = 152/368 (41%), Positives = 226/368 (61%), Gaps = 7/368 (1%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K ++ +++GGKSAEHEVSLQ+A ++++A+D +F+ + I +G+W + L+ Sbjct: 2 KTKLILLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFV 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + + + K E + I + V+FP++HG GEDG++QG+ V Sbjct: 62 EQLRFSATDTIKLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEV 121 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFI---TLTRANRHNISFAEVESKLG 179 N+P+VG+ VLAS+A MDK V K++ DAG+ P + + N AE+E L Sbjct: 122 LNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVAEMEEVLT 181 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+FVKPAN GSSVG+SK T++++ A+ AF +D +V+VEQG+ REIE VLGND P Sbjct: 182 YPVFVKPANLGSSVGISKATNKKELVDAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTP 241 Query: 240 QASTCGEIVL---TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 S GEI+ + FY Y KY D + A + +P + PEI ++++ A+QA+ L + Sbjct: 242 VCSVPGEILPEGAVATFYDYKAKYQDNNTALI-IPTEVDPEILEQMKEYAIQAFLGLDAS 300 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 G+ R D FLT +N++ +NE+NT+PGFT SMYP LWQ +GL Y LI RL++LA ERHAA Sbjct: 301 GLVRADFFLTEDNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLAKERHAA 360 Query: 357 DNALKTTM 364 NALK + Sbjct: 361 KNALKYKL 368 >emb|CAB61227.1| (Y15704) vana protein [Bacillus circulans] Length = 343 Score = 250 bits (639), Expect = 1e-65 Identities = 127/355 (35%), Positives = 195/355 (54%), Gaps = 18/355 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I IDK +++ + +GI K G W + + Sbjct: 1 MNRIKVAILFGGCSEEHDVSVKSAIEIAANIDKEKYETLYIGITKSGVWKMCEKPCVEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 D+ L P + K+ + VDV F ++HG GEDGS+QG+ Sbjct: 61 NDNCCSAVLSPDKKMHGLLVKKNHE--------YEIDHVDVAFSVLHGKSGEDGSIQGLF 112 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 ++ +PFVG D+ +SA CMDK +T + +AG+ F + ++ + Sbjct: 113 ELSGIPFVGCDIQSSAICMDKSLTYIVAENAGIATPEFWVFNKDDKP------MADTFTY 166 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+FVKPA GSS GV KV ++ A++LA ++D K+++EQ + G E+ CAVLGN + Sbjct: 167 PVFVKPARSGSSFGVKKVNGADELDAAIELAGQYDSKILIEQAVLGCEVGCAVLGNSSAF 226 Query: 241 AST-CGEIVLTSDFYAYDTKYIDEDG---AKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 +I L + + E G A + VPA ++ E +I+ A + Y LGC Sbjct: 227 VVGEVDQIRLQHGIFRIHQEAEPEKGSENAVITVPADLSAEERGRIQETAKKIYNALGCR 286 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 G+ARVD+FL +V+NE+NTLPGFT+ S YP++ A G+ + +LI RLI LAL Sbjct: 287 GLARVDMFLQDNGRIVLNEVNTLPGFTSYSRYPRMMAAVGIAFPELIDRLIVLAL 341 >pdb|1E4E|A Chain A, D-Alanyl-D-Lacate Ligase Length = 343 Score = 250 bits (639), Expect = 1e-65 Identities = 130/356 (36%), Positives = 200/356 (55%), Gaps = 20/356 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I I+K +++ + +GI K G W + + Sbjct: 1 MNRIKVAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNG-QPLPTVDVIFPIVHGTLGEDGSLQGM 119 ++ S P K H L+ +N + VDV F +HG GEDGS+QG+ Sbjct: 61 NEN---------CYSAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +PFVG D+ +SA CMDK +T + ++AG+ F + + +R V + Sbjct: 112 FELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRP------VAATFT 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GV KV S ++ A++ A ++D K+++EQ + G E+ CAVLGN Sbjct: 166 YPVFVKPARSGSSFGVKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAA 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDG---AKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L + + E G A + VPA ++ E +I+ + Y+TLGC Sbjct: 226 LVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETVKKIYKTLGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 G+ARVD+FL +V+NE+NTLPGFT+ S YP++ A+G+ +LI RLI LAL Sbjct: 286 RGLARVDMFLQDNGRIVLNEVNTLPGFTSYSRYPRMMAAAGISLPELIDRLIVLAL 341 >gb|AAF71281.1|AF253562_5 (AF253562) ligase [Enterococcus faecalis] Length = 349 Score = 250 bits (638), Expect = 2e-65 Identities = 133/352 (37%), Positives = 210/352 (58%), Gaps = 3/352 (0%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+ ++ ++FGG S E+EVSLQSA + + I+ ++FD++ +GI + G+W+ + Sbjct: 1 MQNKKIAVIFGGNSTEYEVSLQSASAVFENINTNKFDIIPIGITRSGEWYHYTGEKEKIL 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + + ++Q L A + + VD++FP++HG GE+G+LQG+ Sbjct: 61 NNTWFEDSKNLCPVVVSQNRSVKGF-LEIASDKYRIIKVDLVFPVLHGKNGENGTLQGIF 119 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 +A +P VG D L+SA CMDKD +L+ AG+++ +T R N + E+E+ L Sbjct: 120 ELAGIPVVGCDTLSSALCMDKDRAHKLVSLAGISVPKSVTFKRFNE-EAAMKEIEANLTY 178 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 PLF+KP GSS G++KV +++ A++LAFE D +VIVE+ I G E+ CAVLG D Sbjct: 179 PLFIKPVRAGSSFGITKVIEKQELDAAIELAFEHDTEVIVEETINGFEVGCAVLGIDELI 238 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 EI L+S F+ Y KY +K+ +PA I E +I+ AV Y+ LGC+G +R Sbjct: 239 VGRVDEIELSSGFFDYTEKYT-LKSSKIYMPARIDAEAEKRIQEAAVTIYKALGCSGFSR 297 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 VD+F TP E+V NE+NT+PGFT+ S YP + + GL ++ ++ +LI L +E Sbjct: 298 VDMFYTPSGEIVFNEVNTIPGFTSHSRYPNMMKGIGLSFSQMLDKLIGLYVE 349 >gb|AAK25989.1|AF360279_1 (AF360279) putative biotin carboxylase [Arabidopsis thaliana] Length = 537 Score = 250 bits (638), Expect = 2e-65 Identities = 53/338 (15%), Positives = 112/338 (32%), Gaps = 20/338 (5%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ + I + + + Y D H+ L A + + P + +I Sbjct: 76 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADEAVCIGEAPSNQSYLVI 135 Query: 89 DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLL 148 + + +G L E+ M R + F+G + + DK + + Sbjct: 136 PNVLSAAISRGCTMLHPGYGFLSENALFVEMCRDHGINFIGPNPDSIRVMGDKATARETM 195 Query: 149 RDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV 208 ++AG+ P + V +++G P+ +K G G+ ++ + Sbjct: 196 KNAGVPTVPGSDGLL--QSTEEAVRVANEIGFPVMIKATAGGGGRGMRLAKEPGEFVKLL 253 Query: 209 DL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYI 261 A + +E+ + R IE VL + GE + K + Sbjct: 254 QQAKSEAAAAFGNDGCYLEKFVQNPRHIEFQVLADKFGNVVHFGERD--CSIQRRNQKLL 311 Query: 262 DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG 321 +E A+ E+ + AV A ++G G+ V+ L E+NT Sbjct: 312 EE-----APSPALTAELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQ 366 Query: 322 FTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 + P + + R+ R+ ++ Sbjct: 367 VEH----PVTEMIYSVDLIEEQIRVAMGEKLRYKQEDI 400 >ref|NP_198386.1| (NC_003076) acetyl-CoA carboxylase [Arabidopsis thaliana] pir||T01180 acetyl-CoA carboxylase (EC 6.4.1.2), biotin carboxylase - Arabidopsis thaliana gb|AAC09008.1| (U90879) biotin carboxylase subunit [Arabidopsis thaliana] gb|AAC09009.1| (U91414) heteromeric acetyl-CoA carboxylase biotin carboxylase subunit [Arabidopsis thaliana] gb|AAC13611.1| (AF058826) Arabidopsis thaliana biotin carboxylase subunit (GB:U90879) dbj|BAB11486.1| (AB025636) acetyl-CoA carboxylase, biotin carboxylase [Arabidopsis thaliana] Length = 537 Score = 249 bits (637), Expect = 2e-65 Identities = 53/338 (15%), Positives = 112/338 (32%), Gaps = 20/338 (5%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ + I + + + Y D H+ L A + + P + +I Sbjct: 76 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADEAVCIGEAPSNQSYLVI 135 Query: 89 DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLL 148 + + +G L E+ M R + F+G + + DK + + Sbjct: 136 PNVLSAAISRGCTMLHPGYGFLSENALFVEMCRDHGINFIGPNPDSIRVMGDKATARETM 195 Query: 149 RDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV 208 ++AG+ P + V +++G P+ +K G G+ ++ + Sbjct: 196 KNAGVPTVPGSDGLL--QSTEEAVRVANEIGFPVMIKATAGGGGRGMRLAKEPGEFVKLL 253 Query: 209 DL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYI 261 A + +E+ + R IE VL + GE + K + Sbjct: 254 QQAKSEAAAAFGNDGCYLEKFVQNPRHIEFQVLADKFGNVVHFGERD--CSIQRRNQKLL 311 Query: 262 DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG 321 +E A+ E+ + AV A ++G G+ V+ L E+NT Sbjct: 312 EE-----APSPALTAELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQ 366 Query: 322 FTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 + P + + R+ R+ ++ Sbjct: 367 VEH----PVTEMIYSVDLIEEQIRVAMGEKLRYKQEDI 400 >gb|AAF36803.1|AF155139_2 (AF155139) putative D-alanyl-D-alanine ligase VanE [Paenibacillus popilliae] Length = 343 Score = 249 bits (637), Expect = 2e-65 Identities = 126/356 (35%), Positives = 204/356 (56%), Gaps = 20/356 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +L++ I+FGG S EH+VS++SAK I + ID +++ + +GI + G W + + + Sbjct: 1 MNRLKIAILFGGCSEEHDVSVKSAKEIANNIDTEKYEPIYIGITRSGVWKMCEKPCMDWD 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQ-NGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 ++ S P K H L+ + G + +D +F ++HG GEDG++QG+ Sbjct: 61 NEN---------CRSAVLSPDKKMHGLLVMRNKGYQIQRIDAVFSVLHGKSGEDGAIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++++P+VG DV +SA CMDK +T + ++AG F+ L + + + L Sbjct: 112 FELSSIPYVGCDVQSSAVCMDKSLTYIVAQNAGFGTPEFLILNHGDIPDS------NTLT 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GV+KV +E++ A++ A ++D KV++EQ + G E+ CAVLGN + Sbjct: 166 YPVFVKPARSGSSFGVNKVNNEDELDAAIETARQYDSKVLIEQAVPGLEVGCAVLGNGTD 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDG---AKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L+ + + E G A V+VPA ++ E KI+ A Y+ LGC Sbjct: 226 LIVGEVDQISLSHGIFRIHQEDQPEKGSENAVVLVPANLSAEKRIKIQETAKAIYKALGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 G++RVD+FL +++NE+NTLPGFT S YP++ A+G+ + LI I LAL Sbjct: 286 KGLSRVDMFLQENGRIILNEVNTLPGFTAYSRYPRMMAAAGMTLSGLIDHCITLAL 341 >ref|NP_243491.1| (NC_002570) pyruvate carboxylase [Bacillus halodurans] dbj|BAB06344.1| (AP001516) pyruvate carboxylase [Bacillus halodurans] Length = 1150 Score = 249 bits (637), Expect = 3e-65 Identities = 53/334 (15%), Positives = 104/334 (30%), Gaps = 23/334 (6%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ--VPGK 82 KNI + +R ++ + + H+ + Y H A + + P + Sbjct: 5 KNIKKVLVANRGEIAIRIFRACTELHIRTVAIYSKEDTGAYHRYKADEAYLVGEGKKPIE 64 Query: 83 HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKD 142 + VD I P +G L E+ + F+G ++ DK Sbjct: 65 AYLDIEGIIEIAKRHGVDAIHPG-YGFLSENIEFAKRCHEEGIIFIGPELEHLVMFGDKV 123 Query: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEE 202 + A L + P + K G P +K A G G+ V SE Sbjct: 124 QAREQAIKANLPVIPGSDGPVS--SLEDVKAFADKHGYPFIIKAALGGGGRGMRIVRSEN 181 Query: 203 QYAIAVDL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYA 255 + + A + +V VE+ I + IE +L + + E Sbjct: 182 DVQESYERAKSEAKAAFGNDEVYVEKFIENPKHIEVQILADKHGNTLHLYERD--CSVQR 239 Query: 256 YDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINE 315 K ++ V +++ ++ ++I AVQ + + V+ + E E Sbjct: 240 RHQKVVE-----VAPSVSLSEDVRERICQAAVQLAENVNYVNAGTVEFLVDREGNFYFIE 294 Query: 316 INTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 +N + +G+ + + Sbjct: 295 VNPRIQVEHT----ITEMVTGIDIVQSQLFIADG 324 >pir||T35363 D-alanine--D-alanine ligase (EC 6.3.2.4) A SC66T3.06 [similarity] - Streptomyces coelicolor emb|CAB45462.1| (AL079348) putative D-alanine:D-lactate ligase [Streptomyces coelicolor A3(2)] Length = 346 Score = 249 bits (635), Expect = 4e-65 Identities = 134/356 (37%), Positives = 199/356 (55%), Gaps = 20/356 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +L+VGIVFGG S EH VS++SA+ + +D ++ +GI K G W + D Sbjct: 1 MARLKVGIVFGGSSEEHAVSVKSAQEVARNLDTEKYQPFFVGITKDGAWRLCDGPGQDWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLP-TVDVIFPIVHGTLGEDGSLQGM 119 D + P + H L+ + GQ +DV+ P++HGTLGEDG+ QG+ Sbjct: 61 NGD---------CRPVVLSPDRSVHGLLVLEQGQYRSVRLDVVLPVLHGTLGEDGATQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L ++ +P+VG DV +SA CMDK + + R AG+ F T+T + +L Sbjct: 112 LELSGIPYVGCDVQSSALCMDKSLAYVVARSAGIATPDFWTVTGDETID------PGRLT 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLG-NDN 238 P+FVKPA GSS GVSKV E A AV+ A +D KV++E + G E+ CA+LG + + Sbjct: 166 YPVFVKPARSGSSFGVSKVCRPEDLATAVESARRYDTKVLIEAAVVGSEVGCAILGNDPD 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKV---VVPAAIAPEINDKIRAIAVQAYQTLGC 295 I L+ F+ + E+G++ VVPA I E ++ A Y+ LGC Sbjct: 226 LIVGEVDRIALSHGFFRIHQEEQPENGSENSTPVVPADIPTEKRSLVQETAKAVYRALGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 G++RVD+FL + EVV+NE+NTLPG T+ S YP++ A+GL +++I R + LAL Sbjct: 286 RGLSRVDMFLKEDGEVVLNEVNTLPGMTSYSRYPRMMAAAGLPLSEVIDRTLSLAL 341 >pdb|1E4E|B Chain B, D-Alanyl-D-Lacate Ligase Length = 343 Score = 248 bits (634), Expect = 5e-65 Identities = 130/356 (36%), Positives = 200/356 (55%), Gaps = 20/356 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I I+K +++ + +GI K G W + + Sbjct: 1 MNRIKVAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNG-QPLPTVDVIFPIVHGTLGEDGSLQGM 119 ++ S P K H L+ +N + VDV F +HG GEDGS+QG+ Sbjct: 61 NEN---------CYSAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +PFVG D+ +SA CMDK +T + ++AG+ F + + +R V + Sbjct: 112 FELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRP------VAATFT 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GV KV S ++ A++ A ++D K+++EQ + G E+ CAVLGN Sbjct: 166 YPVFVKPARSGSSFGVKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAA 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDG---AKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L + + E G A + VPA ++ E +I+ + Y+TLGC Sbjct: 226 LVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETVKKIYKTLGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 G+ARVD+FL +V+NE+NTLPGFT+ S YP++ A+G+ +LI RLI LAL Sbjct: 286 RGLARVDMFLQDRGRIVLNEVNTLPGFTSYSRYPRMMAAAGISLPELIDRLIVLAL 341 >ref|NP_485023.1| (NC_003272) D-alanyl-D-alanine ligase [Nostoc sp. PCC 7120] dbj|BAB72937.1| (AP003584) D-alanyl-D-alanine ligase [Nostoc sp. PCC 7120] Length = 364 Score = 248 bits (634), Expect = 5e-65 Identities = 158/363 (43%), Positives = 224/363 (61%), Gaps = 13/363 (3%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAI----DKSRFDVVLLGIDKQGQWHVSDASNYLL 59 +RVG++FGG+S EHEVS+ SA+ I A+ + S+++++ I K G+W +A +L Sbjct: 1 MRVGLLFGGRSGEHEVSISSARAIASALSAGENASKYEILPFYIHKDGRWLAGEAPQQVL 60 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 + P + S+ + + + L Q+ + VDV FPI+HG GEDG++QG+ Sbjct: 61 KSGAPL-LESSNSSPAENNLVNSQQQTLERWQSPSQVAEVDVWFPILHGPNGEDGTIQGL 119 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRH------NISFAE 173 L + PFVGS VL SA MDK K AGL + +TRA E Sbjct: 120 LTLMQTPFVGSGVLGSALGMDKIAMKMAFEQAGLPQVKYKAVTRAQIWSNPCVFPKLCDE 179 Query: 174 VESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAV 233 +E+ LG P FVKPAN GSSVG+SKV S ++ A+D A +D ++I+E G+ RE+ECAV Sbjct: 180 IEASLGYPCFVKPANLGSSVGISKVRSRQELEDALDNAANYDRRIIIEAGVAAREVECAV 239 Query: 234 LGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 LGND PQAST GEI SDFY Y+TKY A +++PA I +I+ +I+ +A+QA+ + Sbjct: 240 LGNDQPQASTVGEITFNSDFYDYETKYTAGK-ADLLIPAIIPDDISRQIQNMALQAFAAV 298 Query: 294 GCAGMARVDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 AG+ARVD F EV+INEINTLPGFT SMYP+LW SG+ + +L+ +L++LA+E Sbjct: 299 DAAGLARVDFFYVEATGEVLINEINTLPGFTATSMYPQLWAHSGIPFPELVDKLVQLAIE 358 Query: 353 RHA 355 RH Sbjct: 359 RHN 361 >ref|NP_214014.1| (NC_000918) biotin carboxylase [Aquifex aeolicus] pir||G70427 biotin carboxylase - Aquifex aeolicus gb|AAC07413.1| (AE000742) biotin carboxylase [Aquifex aeolicus] Length = 477 Score = 248 bits (634), Expect = 6e-65 Identities = 54/343 (15%), Positives = 110/343 (31%), Gaps = 22/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 + +R +V + I + + + Y H+ A + P + Sbjct: 1 MFRKVLVANRGEVAVRIIRACKELGIKTVAIYSEADVRSLHVKKADEAYLITGDPIRAYL 60 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + + D I P +G L E+ R + F+G DK K Sbjct: 61 DYVRIVDLAKQVGADAIHPG-YGFLAENADFARYCRRRGITFIGPTPEQIEMFGDKVKAK 119 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 +++++ GL P R ++G P+ +K A G G+ + +EE+ Sbjct: 120 KVMKEVGLPTIPGT--EEPVRTLEDAKHAVKEIGFPVMLKAAYGGGGRGMRVIRNEEELE 177 Query: 206 IAVDLA------FEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 + A F + +E+ + + IE +LG+ GE Sbjct: 178 KNFESAFREAETFFGKGDLFIEKYVENPKHIEVQILGDKYGNIIHLGERD--CSIQRRHQ 235 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEIN 317 K I+ + + ++ KI AV+A +G ++ + E E+N Sbjct: 236 KLIE-----IAPSPKLPQDLRMKILGNAVRAMTRVGYENAGTLEFLVDLKTGEYYFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + +G+ + + R+ + + Sbjct: 291 TRLQVEHT----ITEAITGVDIVEAMIRIAAGEPLPYLQSDIT 329 >ref|NP_371638.1| (NC_002758) pyruvate carboxylase [Staphylococcus aureus subsp. aureus Mu50] ref|NP_374232.1| (NC_002745) pyruvate carboxylase [Staphylococcus aureus subsp. aureus N315] dbj|BAB42211.1| (AP003132) pyruvate carboxylase [Staphylococcus aureus subsp. aureus N315] dbj|BAB57276.1| (AP003361) pyruvate carboxylase [Staphylococcus aureus subsp. aureus Mu50] Length = 1150 Score = 248 bits (632), Expect = 8e-65 Identities = 52/351 (14%), Positives = 106/351 (29%), Gaps = 30/351 (8%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA--QVPGK 82 K I + +R ++ + + +S + Y H + + P + Sbjct: 2 KQIKKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAE 61 Query: 83 HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKD 142 + + VD I P +G L E+ + F+G + DK Sbjct: 62 SYLNIERIIDVAKQANVDAIHPG-YGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKV 120 Query: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEE 202 + A L + P E + G PL +K + G G+ V E Sbjct: 121 KARTTAIKADLPVIPGTDGPIK--SYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREES 178 Query: 203 QYAIAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYA 255 + A A + +V +E+ I + IE V+G+++ E Sbjct: 179 ELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERD--CSVQR 236 Query: 256 YDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINE 315 K ++ V ++P + +I A+Q + + V+ ++ + E E Sbjct: 237 RHQKVVE-----VAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSGD-EFFFIE 290 Query: 316 INTLPGFTNISMYPKLWQASGLGYTDLITRLIELA------LERHAADNAL 360 +N + +G+ + A + + Sbjct: 291 VNPRVQVEHT----ITEMVTGIDIVKTQILVAAGADLFGEEINMPQQKDIT 337 >emb|CAB64483.1| (AJ243058) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 248 bits (632), Expect = 9e-65 Identities = 129/358 (36%), Positives = 202/358 (56%), Gaps = 14/358 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A++ RF V I + G + + + + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQE 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D V+FP++HG +GEDGS+QG L V Sbjct: 62 DRLMT-------------NATIDWDKQVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEV 108 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P+ Sbjct: 109 LKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDLTAKIAEVEEKLTYPV 168 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 F KP+N GSSVG+SK ++E+ A+ LAF++D +V+VEQG+ REIE +LGN + +++ Sbjct: 169 FTKPSNMGSSVGISKSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKST 228 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G++R + Sbjct: 229 LPGEVVKDVAFYDYDAKYIDNK-ITMDIPAKISDDVVPIMRQNAKTAFRAIGGLGLSRCN 287 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 F T + E+ +N++NT+PGFT SMYP LW + Y DLI RL++LA E A Sbjct: 288 FFYTDKGEISLNKLNTMPGFTQWSMYPLLWDNMRISYPDLIERLVDLAKESFDKREAH 345 >ref|NP_354336.1| (NC_003062) AGR_C_2451p [Agrobacterium tumefaciens] [Agrobacterium tumefaciens str. C58 (Cereon)] ref|NP_532020.1| (NC_003304) acetyl-CoA carboxylase, biotin carboxylase [Agrobacterium tumefaciens str. C58 (U. Washington)] gb|AAK87121.1| (AE008059) AGR_C_2451p [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAL42336.1| (AE009094) acetyl-CoA carboxylase, biotin carboxylase [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 448 Score = 248 bits (632), Expect = 9e-65 Identities = 57/343 (16%), Positives = 108/343 (30%), Gaps = 24/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKH-E 84 + + +R ++ L + + + + + D H+ L + + P + Sbjct: 1 MVSKILIANRGEIALRVLRAAKELGIPTVAVHSTADADAMHVRLADESVCIGPPPSRDSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + D + P +G L E+ +L + F+G DK Sbjct: 61 LNIHQIVAACEITGADAVHPG-YGFLSENAKFADILDAHGITFIGPTAEHIRIMGDKITA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K+ ++ G+ + P + E+ +G P+ +K G G+ +E Sbjct: 120 KQTAQELGIPVVPGSDGEVK---PENALEIARTIGFPVLIKATAGGGGRGMKVAKTEADL 176 Query: 205 AIAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 AV A + V +E+ + K R IE V G+ A GE Sbjct: 177 EDAVATARSEAAAAFGNDAVYMEKYLGKPRHIEVQVFGDGEGNAVHLGERD--CSLQRRH 234 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E A+ E KI I A + L G ++ E E+N Sbjct: 235 QKVLEE-----ANSPALTVEQRMKIGEICADAMRKLKYRGAGTIEFLY-ENGEFYFIEMN 288 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P +G+ R+ + Sbjct: 289 TRLQVEH----PVTEAITGMDLVQEQIRVASGQGLSVTQADIE 327 >pir||T44813 biotin carboxylase (EC 6.3.4.14) yngH [imported] - Bacillus subtilis gb|AAF08802.1|AF184956_9 (AF184956) YngH [Bacillus subtilis] Length = 444 Score = 248 bits (632), Expect = 1e-64 Identities = 56/344 (16%), Positives = 116/344 (33%), Gaps = 22/344 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV-PGKHE 84 + +R ++ + I + + + Y D H A + + + Sbjct: 1 MFTKVLIANRGEIAMRIIRTCSRLGIKTVAVYSEADRDAPHTKAATEAYLIGESRVSESY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D I P +G L E+ + N+ F+G A K Sbjct: 61 LNIERIIETAKKANADAIHPG-YGLLSENSRFAERCKQENIVFIGPAPDIIAKMGSKIEA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 ++ + AG+ + P ++ + + S++G P+ +K + G +G+ V +EE Sbjct: 120 RKAMEAAGVPVVPGVSESLGD--IQEACRTASQIGYPVMLKASAGGGGIGMQLVQNEEAL 177 Query: 205 AIAVD------LAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A + F D + +E+ I+ R IE +L + E Sbjct: 178 RKAYEGNKKRAADFFGDGSMYIEKVIEHARHIEVQLLADHFGHTIHLFERD--CSVQRRH 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E + ++ KI AV+A + +G ++ + P E+N Sbjct: 236 QKVIEE-----APSPFLDDKLRMKIGQTAVKAAKAIGYTNAGTIEFLVDPNQNFYFLEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALK 361 T + P + +GL + R+ + + + Sbjct: 291 TRLQVEH----PVTEEITGLDLVEQQLRIAAGHTLTFSQQDIKR 330 >ref|NP_470190.1| (NC_003212) D-alanine--D-alanine ligase [Listeria innocua] emb|CAC96080.1| (AL596166) D-alanine--D-alanine ligase [Listeria innocua] Length = 370 Score = 247 bits (631), Expect = 1e-64 Identities = 152/368 (41%), Positives = 222/368 (60%), Gaps = 7/368 (1%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K ++ +++GGKSAEHEVSLQ+A ++++A+D +F+ + I +G+W + L+ Sbjct: 2 KTKLILLYGGKSAEHEVSLQTAFSVINALDLEKFEAEPIYITNEGEWVQGPLLSGKLDFV 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + + K E + I + V+FP++HG GEDG++QG+ V Sbjct: 62 EQLRFSATDRVKLATAESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEV 121 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFI---TLTRANRHNISFAEVESKLG 179 N+P+VG+ VLAS+A MDK V K++ DAG+ P + + N E+E L Sbjct: 122 LNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVTEMEEVLT 181 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+FVKPAN GSSVG+SK T++ + A+ AF +D +V+VEQG+ REIE VLGND P Sbjct: 182 YPVFVKPANLGSSVGISKATNKTELIEAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTP 241 Query: 240 QASTCGEIVLTSD---FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 S GEI+ FY Y KY D + A + +P + PEI ++++ AVQA+ L + Sbjct: 242 VCSVPGEILPEGAVAKFYDYKAKYQDNNTALI-IPTEVEPEILEQMKEYAVQAFLGLDAS 300 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 G+ R D FLT +N++ +NE+NT+PGFT SMYP LWQ +GL Y LI RL++LA ERHAA Sbjct: 301 GLVRADFFLTEDNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLAKERHAA 360 Query: 357 DNALKTTM 364 NALK + Sbjct: 361 KNALKYKL 368 >gb|AAG37026.1|AF277571_3 (AF277571) D-alanine:D-lactate ligase [Enterococcus faecium] Length = 343 Score = 247 bits (631), Expect = 1e-64 Identities = 124/358 (34%), Positives = 202/358 (55%), Gaps = 20/358 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M KL++ ++FGG S EH+VS++SA + I+K ++ +GI K G W + D Sbjct: 1 MYKLKIAVLFGGCSEEHDVSVKSAMEVAANINKEKYQPFYIGITKSGAWKLCDKPCRDWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQN-GQPLPTVDVIFPIVHGTLGEDGSLQGM 119 P + H L+ ++ G VDV+ P++HG GEDG++QG+ Sbjct: 61 NYA---------GYPAVISPDRRIHGLLIQKDGGYESQPVDVVLPMIHGKFGEDGTIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L ++ +P+VG D+ +S CMDK + ++++AG+ + F L + + L Sbjct: 112 LELSGIPYVGCDIQSSVICMDKSLAYMVVKNAGIEVPGFRVLQKGDSLE------AETLS 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+FVKPA GSS GV+KV E+ AV A ++D K++VE+ + G E+ CA+LGN N Sbjct: 166 YPVFVKPARSGSSFGVNKVCRAEELQAAVTEAGKYDSKILVEEAVSGSEVGCAILGNGND 225 Query: 240 QAST-CGEIVLTSDFYAYDTKYIDEDG---AKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 + +I L F+ + E G A + VPAA+ E+ ++I+ A + Y+ LGC Sbjct: 226 LITGEVDQIELKHGFFKIHQEAQPEKGSENAVIRVPAALPDEVREQIQETAKKIYRVLGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+AR+D+FL + +V+NE+NT+PGFT+ S YP++ A+G ++++ RLI L+L R Sbjct: 286 RGLARIDLFLREDGSIVLNEVNTMPGFTSYSRYPRMMTAAGFTLSEILDRLIGLSLRR 343 >ref|NP_385425.1| (NC_003047) PROBABLE BIOTIN CARBOXYLASE PROTEIN [Sinorhizobium meliloti] emb|CAC45898.1| (AL591786) PROBABLE BIOTIN CARBOXYLASE PROTEIN [Sinorhizobium meliloti] Length = 449 Score = 247 bits (630), Expect = 2e-64 Identities = 59/342 (17%), Positives = 113/342 (32%), Gaps = 24/342 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 I + +R ++ L + + ++ + + D H+ L + + P + Sbjct: 3 MISKILIANRGEIALRVLRACKELGIATVAVHSTADSDAMHVRLADESVCIGPPPSRESY 62 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + D + P +G L E+ +L + F+G DK Sbjct: 63 LNIHQIVAACEITGADAVHPG-YGFLSENAKFADILDAHGITFIGPTAEHIRLMGDKITA 121 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K+ + G+ + P + E+ ++G P+ +K G G+ +EE+ Sbjct: 122 KKTAEELGIPVVPGSDGEVR---PENALEIARQIGFPVLIKATAGGGGRGMKVARTEEEL 178 Query: 205 AIAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 AV A + V +E+ + K R IE V+G+ A GE Sbjct: 179 ENAVATARSEAAAAFGNDAVYMEKFLGKPRHIEIQVVGDGEGNAIHLGERD--CSLQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K +E A+ E KI + A + L G ++ E E+N Sbjct: 237 QKVWEE-----ANSPALNVEQRMKIGQVCADAMKKLKYRGAGTIEFLY-ENGEFYFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 T + P +G+ R+ A ++ Sbjct: 291 TRLQVEH----PITEAITGIDLVHEQIRVASGAGLSAKQEDI 328 >sp|Q06893|VANB_ENTFC VANCOMYCIN B-TYPE RESISTANCE PROTEIN VANB (VANB LIGASE) (D-ALANINE--D-LACTATE LIGASE) gb|AAC43217.1| (U00456) D-alanine:D-alanine ligase-related protein induced by vancomycin [Enterococcus faecalis] gb|AAB05627.1| (U35369) D-Ala:D-Lac ligase [Enterococcus faecalis] prf||2007289A D-Ala lactate ligase [Enterococcus faecalis] Length = 342 Score = 246 bits (629), Expect = 2e-64 Identities = 130/358 (36%), Positives = 203/358 (56%), Gaps = 21/358 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K++V I+FGG S EH+VS++SA I I+ +FD +GI K G W + Sbjct: 1 MNKIKVAIIFGGCSEEHDVSVKSAIEIAANINTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQN-GQPLPTVDVIFPIVHGTLGEDGSLQGM 119 AD + P + H L+ + +DV FP++HG GEDG++QG+ Sbjct: 61 AD----------SLPAIFSPDRKTHGLLVMKEREYETRRIDVAFPVLHGKCGEDGAIQGL 110 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 111 FELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIEKGDKPE------ARTLT 164 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GV+KV S E+ A++ A ++D K+++EQ I G E+ CAV+GN+ + Sbjct: 165 YPVFVKPARSGSSFGVTKVNSTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDD 224 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDG---AKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L+ + + E G A ++VPA I E ++++ A + Y+ LGC Sbjct: 225 LIVGEVDQIRLSHGIFRIHQENEPEKGSENAMIIVPADIPVEERNRVQETAKKVYRVLGC 284 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+ARVD+FL + +V+NE+NTLPGFT+ S YP++ A+G+ LI LI LA+ER Sbjct: 285 RGLARVDLFLQEDGGIVLNEVNTLPGFTSYSRYPRMAAAAGITLPALIDSLITLAIER 342 >ref|NP_294085.1| (NC_001263) D-alanine--D-alanine ligase [Deinococcus radiodurans] pir||D75529 D-alanine--D-alanine ligase - Deinococcus radiodurans (strain R1) gb|AAF09941.1|AE001896_6 (AE001896) D-alanine--D-alanine ligase [Deinococcus radiodurans] Length = 339 Score = 245 bits (625), Expect = 5e-64 Identities = 148/356 (41%), Positives = 217/356 (60%), Gaps = 24/356 (6%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K R+ ++ GG+S EHEVSL+SA++++ A+ + +FDV + I KQG+W Sbjct: 2 KRRILLLAGGQSGEHEVSLRSARSVLAALPRDQFDVTPVVISKQGRWL------------ 49 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + + + D +FP++HG +GEDG++QG+L + Sbjct: 50 ------PPTETQKALETGVSSQGGDLMLHRAAAAEGYDAVFPLLHGPMGEDGTIQGLLTL 103 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN--RHNISFAEVESKLGL 180 A +PFVGS VL SA MDK +TK++L AG+ + R + + ++LG Sbjct: 104 AGIPFVGSGVLGSAVSMDKVMTKQVLDSAGIPQVAWRLAVRREWQQTPDAVRARAAELGY 163 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIK--GREIECAVLGNDN 238 PLFVKPAN GSSVG+SKV S E+ A+ LAF D +VI+E RE+E +LGND Sbjct: 164 PLFVKPANLGSSVGISKVGSPEELDAALTLAFGLDRRVILEAMTPHKPREVEVGILGNDV 223 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 P AS GE+ +DFY Y+TKY + A++ +PA I PE++++IR A++A++ L CAG+ Sbjct: 224 PVASPVGELSFDADFYDYETKYTEGR-AEMHIPARIPPEVSERIRTEALRAFRALDCAGL 282 Query: 299 ARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 ARVD F E E+ +NE+NT+PGFT SMYPKL++A+GL Y++L+TRL+ELALE Sbjct: 283 ARVDFFYVEETGELFLNEVNTMPGFTTTSMYPKLFEAAGLSYSELVTRLVELALEE 338 >ref|NP_171808.1| (NC_003070) putative 3-methylcrotonyl-CoA carboxylase [Arabidopsis thaliana] gb|AAL50065.1| (AY070723) At1g03090/F10O3_8 [Arabidopsis thaliana] Length = 734 Score = 244 bits (623), Expect = 9e-64 Identities = 55/343 (16%), Positives = 109/343 (31%), Gaps = 23/343 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HEH 85 I + +R ++ + + + + Y D H+ A + + Sbjct: 38 IEKILVANRGEIACRIMRTAKRLGIQTVAVYSDADRDSLHVKSADEAVRIGPPSARLSYL 97 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + I P +G L E + + L F+G A DK +K Sbjct: 98 SGVTIMEAAARTGAQAIHPG-YGFLSESSDFAQLCEDSGLTFIGPPASAIRDMGDKSASK 156 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 R++ AG+ + P + K+G P+ +KP + G G+ V S + +A Sbjct: 157 RIMGAAGVPLVPGYHGH--EQDIDHMKSEAEKIGYPIIIKPTHGGGGKGMRIVQSGKDFA 214 Query: 206 IAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 + A + +++E+ I + R IE + G+ + E Sbjct: 215 DSFLGAQREAAASFGVNTILLEKYITRPRHIEVQIFGDKHGNVLHLYERD--CSVQRRHQ 272 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEIN 317 K I+E I+ + + AV A + +G V+ + ++ E+N Sbjct: 273 KIIEE-----APAPNISEKFRANLGQAAVSAARAVGYYNAGTVEFIVDTESDQFYFMEMN 327 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P G + R+ + Sbjct: 328 TRLQVEH----PVTEMIVGQDLVEWQIRVANGEPLPLSQSEVP 366 >ref|NP_251581.1| (NC_002516) probable biotin carboxylase/biotin carboxyl carrier protein [Pseudomonas aeruginosa] pir||F83284 probable biotin carboxylase/biotin carboxyl carrier protein PA2891 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG06279.1|AE004715_5 (AE004715) probable biotin carboxylase/biotin carboxyl carrier protein [Pseudomonas aeruginosa] Length = 661 Score = 244 bits (622), Expect = 1e-63 Identities = 56/343 (16%), Positives = 110/343 (31%), Gaps = 22/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ-VPGKHE 84 + + +R ++ + + + Y D H+ L A + + Sbjct: 3 SFNKILVANRGEIACRVLRTAHELGYRSVAVYSEADADTRHVQLADEAVCIGPAAVAQSY 62 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 L + + I P +G L E+ A + F+G D A K ++ Sbjct: 63 LNLEAILDAARRSGAEAIHPG-YGFLSENAEFARACEAAGIVFIGPDAEAIHLMGSKRLS 121 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K + AG+ P A + + + ++G PL +K + G G+ V Q Sbjct: 122 KIAMLAAGVPCIPGYEG--AEQDDATLRREAERIGYPLMIKASAGGGGRGMRLVEEPGQL 179 Query: 205 AIAVDLA------FEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + A ++I+E+ + + R +E V G+ + GE Sbjct: 180 LEQLRTARSEALGAFGSAELILERAVLRPRHVEIQVFGDRHGNLLYLGERD--CSVQRRH 237 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E + ++ + AV+A ++ G V+ L + E+N Sbjct: 238 QKVIEE-----APCPVLDADLRRAMGEAAVKAAASVNYVGAGTVEFLLGEDGRFYFLEMN 292 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P +G R+ E + Sbjct: 293 TRLQVEH----PVTELVTGQDLVAWQIRIAEGHPLPLRQEQVE 331 >sp|Q47758|DDL_ENTFA D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) Length = 348 Score = 243 bits (621), Expect = 1e-63 Identities = 136/355 (38%), Positives = 211/355 (59%), Gaps = 10/355 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ +++GG+S EH+VS+ SA ++++AI + V L+ I K GQW + + Sbjct: 1 MKIILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKE 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 H+ + + + ++FP++HG GEDG++QG + Sbjct: 61 VLHLTWAQTPEETGE------FSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETI 114 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN---RHNISFAEVESKLGL 180 N+P+VG+ VLAS MDK +TK LL+ G+ PF+ + R++ F + E L Sbjct: 115 NMPYVGAGVLASVNAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIY 174 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+FVKPAN GSSVG+SKV + E+ A++ AF +D + IVEQGI+ REIE A+LGN++ + Sbjct: 175 PVFVKPANMGSSVGISKVENREELQEALEEAFRYDARAIVEQGIEAREIEVAILGNEDVR 234 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 + GE+V FY YD KYI + ++ +PA + E+ + + A +AY L +G++R Sbjct: 235 TTLPGEVVKDVAFYDYDAKYI-NNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSR 293 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 D FLT +NE+ +NE+NT+PGFT+ SMYP LW+ GL Y+DLI LI+LAL R Sbjct: 294 CDFFLTSKNELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLALNRFK 348 >dbj|BAA12072.1| (D83706) pyruvate carboxylase [Geobacillus stearothermophilus] Length = 1147 Score = 243 bits (620), Expect = 2e-63 Identities = 52/357 (14%), Positives = 107/357 (29%), Gaps = 32/357 (8%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ--VPGK 82 + I + +R ++ + + + + Y H A + + P + Sbjct: 4 RRIRKVLVANRGEIAIRVFRACTELGIRTVAIYSKEDVGSYHRYKADEAYLVGEGKKPIE 63 Query: 83 HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKD 142 + VD I P +G E+ R + F G + DK Sbjct: 64 AYLDIEGIIEIAKAHDVDAIHPG-YGFFSENIQFAKRCREEGIIFFGPNENHLDMFGDKV 122 Query: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEE 202 + +AG+ + P G P+ +K A G G+ V S+ Sbjct: 123 KARHAAVNAGIPVIPGSDGPV--DGLEDVVAFAEAHGYPIIIKAALGGGGRGMRFVRSKS 180 Query: 203 QYAIAVDL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYA 255 + A + A +V VE+ I + IE +LG+ E Sbjct: 181 EVKEAFERAKSEAKAAFGSDEVYVEKLIENPKHIEVQILGDYEGNIVHLYERD--CSVQR 238 Query: 256 YDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINE 315 K ++ V +++ E+ +I AVQ +++G V+ ++ + E E Sbjct: 239 RHQKVVE-----VAPSVSLSDELRQRICEAAVQLMRSVGYVNAGTVEFLVSGD-EFYFIE 292 Query: 316 INTLPGFTNISMYPKLWQASGLGYTDLITRLIEL--------ALERHAADNALKTTM 364 +N + +G+ + + + + + Sbjct: 293 VNPRIQVEHT----ITEMITGIDIVQSQILIADGCSLHSHEVGIPKQEDIRINGYAI 345 >gb|AAF72363.1|AF192329_24 (AF192329) VanB [Enterococcus faecalis] Length = 342 Score = 243 bits (619), Expect = 3e-63 Identities = 128/358 (35%), Positives = 201/358 (55%), Gaps = 21/358 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I I+ +FD +GI K G W + Sbjct: 1 MNRIKVAIIFGGCSEEHDVSVKSAIEIAANINTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNG-QPLPTVDVIFPIVHGTLGEDGSLQGM 119 AD + P + H L+ + +DV FP++HG GEDG++QG+ Sbjct: 61 AD----------SLPAILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGL 110 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 111 FELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPE------AGALT 164 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GV+KV E+ A++ A ++D K+++EQ I G E+ CAV+GN+ + Sbjct: 165 YPVFVKPARSGSSFGVTKVNGTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDD 224 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDG---AKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L+ + + E G A + VPA I E ++++ A + Y+ LGC Sbjct: 225 LIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGC 284 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+ARVD+FL + +V+NE+NTLPGFT+ S YP++ A+G+ LI LI LAL+R Sbjct: 285 RGLARVDLFLQEDGGIVLNEVNTLPGFTSYSRYPRMVAAAGITLPALIDSLITLALKR 342 >gb|AAF57199.1| (AE003779) CG2118 gene product [Drosophila melanogaster] Length = 684 Score = 242 bits (617), Expect = 5e-63 Identities = 52/346 (15%), Positives = 109/346 (31%), Gaps = 23/346 (6%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKH 83 + I + +R ++ I + V + + + H L + + + Sbjct: 25 RPISKILISNRGEIACRVIRTARKLGVRTVAVFSDPDEKSMHTQLADESYRVGEAASSAS 84 Query: 84 EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + + I P +G L E + + + F+G A K Sbjct: 85 YLRGERILDIAKRSGAQAIHPG-YGFLSESVEFAELCQREGIIFMGPPSSAIRDMGIKST 143 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 +K ++ AG+ I ++ + K+G PL +K G G+ + Sbjct: 144 SKAIMAAAGVPIINGYHGD--DQSDECLQREADKIGFPLMIKAVRGGGGKGMRIAEKPDD 201 Query: 204 YAIAVDLAF------EFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 + A++ A D V++E+ + R +E V + A E Sbjct: 202 FLTALNSARTESEKSFGDSSVLLERYVRSPRHVEVQVFADQYGDAVYLWERD--CSVQRR 259 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTP-ENEVVINE 315 K I+E ++ ++ ++ AV+A + +G G V+ L + E Sbjct: 260 HQKIIEE-----APAPGLSEDLRRELGEAAVRAAKAVGYVGAGTVEFILDKEDLSFHFME 314 Query: 316 INTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALK 361 +NT + P +G + R+ + Sbjct: 315 MNTRLQVEH----PITEMITGTDLVEWQIRIAAGEPLPLKQSEITR 356 >gb|AAK60339.1| (AY034410) biotin carboxylase [Brassica napus] Length = 535 Score = 242 bits (617), Expect = 5e-63 Identities = 53/338 (15%), Positives = 112/338 (32%), Gaps = 20/338 (5%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ + I + + + Y D H+ L A + + P + +I Sbjct: 74 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADEAVCIGEAPSNQSYLVI 133 Query: 89 DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLL 148 + + +G E+ M R + F+G + + DK + + Sbjct: 134 PNVLSAAISRGCTMLHPGYGFHSENALFVEMCREHRINFIGPNPDSIRVMGDKSTARETM 193 Query: 149 RDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV 208 ++AG+ P ++ +++G P+ +K G G+ ++ + Sbjct: 194 KNAGVPTVPGSDGLLK--STEEGVKLANEIGFPVMIKATAGGGGRGMRLANEPSEFVKLL 251 Query: 209 D------LAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYI 261 A + V +E+ + R IE +L + GE + K + Sbjct: 252 QAAKSEAAAAFGNDGVYLEKYVQNPRHIEFQILADKFGNVVHFGERD--CSIQRRNQKLL 309 Query: 262 DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG 321 +E A+ PE+ + AV A ++G G+ V+ L E+NT Sbjct: 310 EE-----APSPALTPELRKAMGDAAVAAAASIGYVGVGTVEFLLDERGSFYFMEMNTRIQ 364 Query: 322 FTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 + P + + R+ R+ D Sbjct: 365 VEH----PVTEMIYSVDLIEEQIRVAMGEKLRYTQDEI 398 >gb|AAC23582.1| (U82965) D-alanine:D-alanine ligase-related protein [Streptomyces toyocaensis] Length = 340 Score = 241 bits (616), Expect = 6e-63 Identities = 123/347 (35%), Positives = 199/347 (56%), Gaps = 18/347 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +L++GIVFGG+S EH VS++SA+ + +D +++ +GI K G W + D + Sbjct: 1 MARLKIGIVFGGRSEEHPVSIKSAREVARNLDLEKYEPFYIGITKSGAWKLCDGPDAEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 D + L P + + + G +DV+ P++HG LGEDG++QG+L Sbjct: 61 DGDCRPVVLSPDSDVHGLLVLEQG--------GCSTIRLDVVLPVLHGKLGEDGAMQGLL 112 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 ++ +P+VG D+ +SA CMDK + ++R+AG+ F T+ A+ + Sbjct: 113 ELSGIPYVGCDIQSSAVCMDKSLAYAVVRNAGIATPNFWTVA-ADETVDAAR-----FTY 166 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-NP 239 P+FVKPA GSS GV+KV+ EE+ + AV+ A ++D KV++E+ + G EI CA+LG + Sbjct: 167 PVFVKPARSGSSFGVTKVSREEEMSSAVETARQYDSKVLIEEAVPGSEIGCAILGTGTDL 226 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 I L+ F+ + E G++ +VPA I +++ A Y+ LGC Sbjct: 227 VVGEVDRIALSHGFFRIHQEDSPETGSENSIAIVPADIPEASRLRVQEEAKAVYRVLGCR 286 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLI 343 G+ARVD+FL + EVV+NE+NTLPG T+ S YP++ A+GL +++I Sbjct: 287 GIARVDMFLKEDGEVVLNEVNTLPGLTSYSRYPRMMAAAGLPMSEVI 333 >gb|AAG45427.1|AF317651_4 (AF317651) pyruvate carboxylase ATP-binding subunit PYCA [Methanosarcina barkeri] Length = 493 Score = 241 bits (616), Expect = 6e-63 Identities = 50/342 (14%), Positives = 107/342 (30%), Gaps = 23/342 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HE 84 + +R ++ + + + +S + + A + P Sbjct: 1 MFKKVLIANRGEIAIRVMRACRELGISTVAVCSEADKNALFAKYADEAYLIGPAPSSQSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + I P +G L E+ + F+G A K Sbjct: 61 LNMEAILAVAKNTGAEAIHPG-YGFLSENPVFAKRCEEEGIVFIGPPSHVIAEMGSKIRA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + L+ AG+ + P A + ++ ++G P+ +K + G +G+ V S +++ Sbjct: 120 RNLMVKAGVPVVPGTK--DAVEDPVEAVKIAEEIGYPVLIKASAGGGGIGMKVVNSSDEF 177 Query: 205 AIAVDLA------FEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A+ D V +E+ + + R IE +L + Sbjct: 178 ATALSSTRQMAGSAFGDSSVFIEKYVEEPRHIEIQILADGYGNTIYLS--DRECSIQRRH 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E + PE+ K+ AV+ +T+G V+ + E+N Sbjct: 236 QKLIEE-----APSPIMTPELRAKMGEAAVRVAKTIGYVNAGTVEFLYSK-GNFYFLEVN 289 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 T + +G+ R+ ++ Sbjct: 290 TRLQVEHG----ITEMVTGIDIVREQLRIAWGKKLEFKQEDI 327 >gb|AAC43218.1| (U00457) D-alanine:D-alanine ligase-related protein [Enterococcus faecalis] prf||2007289B D-Ala D-Ala ligase [Enterococcus faecalis] Length = 348 Score = 241 bits (616), Expect = 6e-63 Identities = 136/354 (38%), Positives = 210/354 (58%), Gaps = 10/354 (2%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 ++ +++GG+S EH+VS+ SA ++++AI + V L+ I K GQW + + Sbjct: 2 KIILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEV 61 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 H+ + + + ++FP++HG GEDG++QG + N Sbjct: 62 LHLTWAQTPEETGE------FSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETIN 115 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN---RHNISFAEVESKLGLP 181 +P+VG+ VLAS MDK +TK LL+ G+ PF+ + R++ F + E L P Sbjct: 116 MPYVGAGVLASVNAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYP 175 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 +FVKPAN GSSVG+SKV + E+ A++ AF +D + IVEQGI+ REIE A+LGN++ + Sbjct: 176 VFVKPANMGSSVGISKVENREELQEALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRT 235 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 + GE+V FY YD KYI + ++ +PA + E+ + + A +AY L +G++R Sbjct: 236 TLPGEVVKDVAFYDYDAKYI-NNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRC 294 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 D FLT +NE+ +NE+NT+PGFT+ SMYP LW+ GL Y+DLI LI+LAL R Sbjct: 295 DFFLTSKNELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLALNRFK 348 >ref|NP_241998.1| (NC_002570) biotin carboxylase [Bacillus halodurans] dbj|BAB04851.1| (AP001511) biotin carboxylase [Bacillus halodurans] Length = 452 Score = 241 bits (616), Expect = 7e-63 Identities = 53/343 (15%), Positives = 117/343 (33%), Gaps = 22/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 + +R ++ + I + ++ + Y D H+ A + + P + Sbjct: 1 MFKKVLIANRGEIAVRIIRTCQKLNIRTVAIYSEADVDSLHVKHADEAFLIGKPPVAESY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 ++ VD I P +G L E+ A + F+G K Sbjct: 61 LKVDTILEVAKQAGVDAIHPG-YGLLSENARFARACVEAGISFIGPSPEVIERMGSKIAA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + ++ AG+ + P + A+ + K G P+ +K + G +G+ V ++E+ Sbjct: 120 RTAMQTAGVPVIPGSDVALADE--EEAVHLARKFGYPVMLKASAGGGGIGMQLVRNDEEM 177 Query: 205 AIAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A +F D + +E+ + R IE + + + E Sbjct: 178 RKAFAGNQKRATSFFGDGTMFLEKAVENPRHIEVQIAADHHGHVVHLWERD--CSIQRRH 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E + + +KI +AV+A + + + V+ + E + E+N Sbjct: 236 QKVVEE-----APSPFVDEALREKIGQLAVKAAKAIDYRNLGTVECLVDGEKNIYFLEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P + +G+ + + +A Sbjct: 291 TRLQVEH----PVTEEITGIDLVEWQLLIAAGEQLPYAQHEIP 329 >ref|NP_283408.1| (NC_003116) putative acetyl-CoA carboxylase biotin carboxylase component [Neisseria meningitidis Z2491] pir||H81978 probable acetyl-CoA carboxylase (EC 6.4.1.2) biotin carboxylase chain NMA0596 [similarity] - Neisseria meningitidis (group A strain Z2491) emb|CAB83886.1| (AL162753) putative acetyl-CoA carboxylase biotin carboxylase component [Neisseria meningitidis Z2491] Length = 453 Score = 241 bits (615), Expect = 8e-63 Identities = 51/343 (14%), Positives = 108/343 (30%), Gaps = 22/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HE 84 + + +R ++ L + + ++ + + D H+ L + + Sbjct: 1 MLKKVLIANRGEIALRVLRACREMGIATVAVHSEADKDSLHVKLADESVCIGPAASAQSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + D + P +G L E+ + + F+G DK Sbjct: 61 LNVPAIIAAAEVSCADAVHPG-YGFLAENADFAEQVEQSGFTFIGPKPDTIRLMGDKVSA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K + AG+ P + ++ K+G P+ +K + G G+ V +E Sbjct: 120 KHAMIAAGVPCVPGSDGALPDDGEE-ILKIADKIGYPVIIKASGGGGGRGMRVVEKKEDL 178 Query: 205 A------IAVDLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A + V +E+ ++ R +E V+ +++ A E Sbjct: 179 LQSVEMTKAEAGAAFGNPMVYMERYLQRPRHVEIQVIADEHGNAVYLAERD--CSLQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E I + KI A + +G G + + E E+N Sbjct: 237 QKVIEE-----APAPFITEKERAKIGKACADACKRIGYRGAGTFEFLY-EDGEFFFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P +G+ R+ ++ + Sbjct: 291 TRVQVEH----PVTELITGVDIVQEQLRIAAGLPLQYKQKDIQ 329 >ref|NP_539717.1| (NC_003317) PROPIONYL-COA CARBOXYLASE ALPHA CHAIN, MITOCHONDRIAL [Brucella melitensis] gb|AAL51981.1| (AE009521) PROPIONYL-COA CARBOXYLASE ALPHA CHAIN, MITOCHONDRIAL [Brucella melitensis] Length = 667 Score = 241 bits (615), Expect = 8e-63 Identities = 59/343 (17%), Positives = 118/343 (34%), Gaps = 22/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HE 84 I + +R ++ I + ++ + Y + H+ + A + P Sbjct: 1 MIKKILIANRGEIACRVIKSAKKKGIATVAVYSDADRNALHVKMADEAVHIGPAPSNQSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D + P +G L E+ L+ AN+ F+G V A A DK + Sbjct: 61 IVIDKILAAIKEIGADAVHPG-YGFLSENPRFAEALKAANVTFIGPPVNAIDAMGDKITS 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K+L +AG++ P + + +G P+ +K + G G+ ++E+ Sbjct: 120 KKLAAEAGVSTVPGHMGLIEDADE--AVRIAGSIGYPVMIKASAGGGGKGMRIAWNDEEA 177 Query: 205 AIAVDLAF------EFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 L+ D ++ +E+ + + R IE VLG+ + GE + Sbjct: 178 REGFQLSRNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDQHGNVVYLGER--ECSIQRRN 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E + + AV + +G V+ + E+N Sbjct: 236 QKVIEE-----APSPFLDEATRKAMGEQAVALAKAVGYYSAGTVEFIVDGNRNFYFLEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P +G+ + + R+ R A + Sbjct: 291 TRLQVEH----PVTELITGIDLVEEMIRVASGEKLRFAQADVK 329 >sp|P29753|VANC_ENTGA VANCOMYCIN C-TYPE RESISTANCE PROTEIN VANC (VANC LIGASE) pir||JN0249 vancomycin resistance protein vanC - Enterococcus gallinarum gb|AAA24786.1| (AF162694) D-alanine-D-alanine ligase-related protein [Enterococcus gallinarum] Length = 343 Score = 241 bits (614), Expect = 1e-62 Identities = 116/352 (32%), Positives = 181/352 (50%), Gaps = 10/352 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 ++ ++FGG S E+ VSL SA +++ AID +++V+ +GI W+ + + D Sbjct: 2 KKIAVLFGGNSPEYSVSLTSAASVIQAIDPLKYEVMTIGIAPTMDWYWYQGNLANVRNDT 61 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + + G+ DV+FP++HG GEDG +QG+L + Sbjct: 62 WLED---------HKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELM 112 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 NLP+VG V ASA CM+K + +L G+ AP + L+R + G P+F Sbjct: 113 NLPYVGCHVAASALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIF 172 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 +KP GSS G++KVT + A+ AF + V++++ I G EI C +LGN+ Sbjct: 173 IKPNEAGSSKGITKVTDKTALQSALTTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGA 232 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 C I L F+ ++ KY A + VPA + + +I+ A Y+ LG G+AR+D Sbjct: 233 CDAISLVDGFFDFEEKYQ-LISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDF 291 Query: 304 FLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 F+T + + +NEINT+PGFT S YP + GL Y L+ +LI LA E Sbjct: 292 FVTNQGAIYLNEINTMPGFTGHSRYPAMMAEVGLSYEILVEQLIALAEEDKR 343 >emb|CAB09721.1| (Z97025) pyruvate carboxylase [Bacillus subtilis] Length = 384 Score = 240 bits (612), Expect = 2e-62 Identities = 57/344 (16%), Positives = 109/344 (31%), Gaps = 25/344 (7%) Query: 23 SAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ--VP 80 S ++I + +R ++ + + ++ + Y H A + + P Sbjct: 2 SQQSIQKVLVANRGEIAIRIFRACTELNIRTVAVYSKEDSGSYHRYKADEAYLVGEGKKP 61 Query: 81 GKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMD 140 + + VD I P +G L E+ + F+G D Sbjct: 62 IDAYLDIEGIIDIAKRNKVDAIHPG-YGFLSENIHFARRCEEEGIVFIGPKSEHLDMFGD 120 Query: 141 KDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTS 200 K + AG+ + P + + G P+ +K + G G+ V S Sbjct: 121 KVKAREQAEKAGIPVIPGSDG--PAETLEAVEQFGQANGYPIIIKASLGGGGRGMRIVRS 178 Query: 201 EEQYAIAVDL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDF 253 E + A + A + +V VE+ I + IE V+G+ E Sbjct: 179 ESEVKEAYERAKSEAKAAFGNDEVYVEKLIENPKHIEVQVIGDKQGNVVHLFERD--CSV 236 Query: 254 YAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVI 313 K I+ V +++PE+ D+I AV + + V+ + NE Sbjct: 237 QRRHQKVIE-----VAPSVSLSPELRDQICEAAVALAKNVNYINAGTVEFLV-ANNEFYF 290 Query: 314 NEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 E+N + +G+ L+ H+ Sbjct: 291 IEVNPRVQVEHT----ITEMITGVDIVQTQI-LVAQGHSLHSKK 329 >gb|AAD42184.1|AF130997_5 (AF130997) D-alanine:D-lactate ligase [Enterococcus faecium] Length = 343 Score = 240 bits (612), Expect = 2e-62 Identities = 124/357 (34%), Positives = 203/357 (56%), Gaps = 18/357 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V ++FGG S EH VS++SA I ID ++ +GI K G W + + Sbjct: 1 MFRIKVAVLFGGCSEEHNVSIKSAMEIAANIDTKKYQPYYIGITKSGVWKMCEKPCLEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + P ++ + K G + VDV+FP++HG GEDGS+QG+L Sbjct: 61 QYAGDPVVFSPDRSTHGLLIQKD--------KGYEIQPVDVVFPMIHGKFGEDGSIQGLL 112 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 ++ +P+VG D+ +S CMDK + ++++AG+ + F L +R Sbjct: 113 ELSGIPYVGCDIQSSVICMDKALAYTVVKNAGITVPGFRILQEGDRLET------EDFVY 166 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN-P 239 P+FVKPA GSS GV+KV E+ A++ A ++D K+++E+ + G E+ CA+LGN N Sbjct: 167 PVFVKPARSGSSFGVNKVCKAEELQAAIEEARKYDSKILIEEAVTGSEVGCAILGNGNDL 226 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDG---AKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 A +I L F+ + E G A + VPAA+ E+ ++I+ A++ Y+ LGC Sbjct: 227 MAGEVDQIELRHGFFKIHQEAQPEKGSENAVIRVPAALPDEVREQIQETAMKIYRILGCR 286 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+AR+D+FL + +V+NE+NT+PGFT+ S YP++ A+G ++++ RLIEL+L R Sbjct: 287 GLARIDLFLREDGCIVLNEVNTMPGFTSYSRYPRMMTAAGFTLSEILDRLIELSLRR 343 >ref|NP_274857.1| (NC_003112) acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis MC58] pir||F81033 acetyl-CoA carboxylase, biotin carboxylase NMB1861 [imported] - Neisseria meningitidis (group B strain MD58) gb|AAF42195.1| (AE002536) acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis MC58] Length = 453 Score = 239 bits (610), Expect = 3e-62 Identities = 51/343 (14%), Positives = 108/343 (30%), Gaps = 22/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HE 84 + + +R ++ L + + ++ + + D H+ L + + Sbjct: 1 MLKKVLIANRGEIALRVLRACREMGIATVAVHSEADKDSLHVKLADESVCIGPAASAQSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + D + P +G L E+ + + F+G DK Sbjct: 61 LNVPAIIAAAEVSCADAVHPG-YGFLAENADFAEQVEQSGFTFIGPKPDTIRLMGDKVSA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K + AG+ P + ++ K+G P+ +K + G G+ V +E Sbjct: 120 KHAMIAAGVPCVPGSDGALPDDGEE-ILKIADKVGYPVIIKASGGGGGRGMRVVEKKEDL 178 Query: 205 A------IAVDLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A + V +E+ ++ R +E V+ +++ A E Sbjct: 179 LQSVEMTKAEAGAAFGNPMVYMERYLQRPRHVEIQVIADEHGNAIYLAERD--CSLQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E I + KI A + +G G + + E E+N Sbjct: 237 QKVIEE-----APAPFITEKERAKIGNACADACKRIGYRGAGTFEFLY-EDGEFFFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P +G+ R+ ++ + Sbjct: 291 TRVQVEH----PVTELITGVDIVQEQLRIAAGLPLQYKQKDIQ 329 >gb|AAG34685.1|AF310955_1 (AF310955) ligase VanB2 [Enterococcus faecalis] gb|AAG34693.1|AF310957_1 (AF310957) ligase VanB2 [Enterococcus faecium] Length = 342 Score = 239 bits (610), Expect = 3e-62 Identities = 127/358 (35%), Positives = 200/358 (55%), Gaps = 21/358 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V +FGG S EH+VS++SA I ID +FD +GI K G W + Sbjct: 1 MNRIKVATIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNG-QPLPTVDVIFPIVHGTLGEDGSLQGM 119 AD + P + H L+ + +DV FP++HG GEDG++QG+ Sbjct: 61 AD----------SLPAILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGL 110 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 111 FVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPE------AGALT 164 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GV+KV E+ A++ A ++D K+++EQ I G E+ CAV+GN+ + Sbjct: 165 YPVFVKPARSGSSFGVTKVNGPEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDD 224 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDG---AKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L+ + + E G A + VPA I E ++++ A + Y+ LGC Sbjct: 225 LIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGC 284 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+ARVD+FL + +V+NE+NT+PGFT+ S YP++ A+G+ LI LI LAL+R Sbjct: 285 RGLARVDLFLQEDGGIVLNEVNTMPGFTSYSRYPRMVAAAGITLPALIDSLITLALKR 342 >emb|CAB05883.1| (Z83305) D-alanine:D-alanine ligase-related protein [Enterococcus faecium] gb|AAB39760.1| (U81452) D-alanine:D-alanine ligase-related protein [Enterococcus faecium] gb|AAG34691.1|AF310956_6 (AF310956) D-alanine:D-lactate ligase [Enterococcus faecium] Length = 342 Score = 239 bits (609), Expect = 4e-62 Identities = 128/358 (35%), Positives = 201/358 (55%), Gaps = 21/358 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I ID +FD +GI K G W + Sbjct: 1 MNRIKVAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNG-QPLPTVDVIFPIVHGTLGEDGSLQGM 119 AD + P + H L+ + +DV FP++HG GEDG++QG+ Sbjct: 61 AD----------SLPAILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGL 110 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 111 FVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPE------AGALT 164 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS G++KV E+ A++ A ++D K+++EQ I G E+ CAV+GN+ + Sbjct: 165 YPVFVKPARSGSSFGLTKVNGTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDD 224 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDG---AKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L+ + + E G A + VPA I E ++++ A + Y+ LGC Sbjct: 225 LIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGC 284 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+ARVD+FL + +V+NE+NTLPGFT+ S YP++ A+G+ LI LI LAL+R Sbjct: 285 RGLARVDLFLQEDGGIVLNEVNTLPGFTSYSRYPRMMAAAGITLPALIDSLITLALKR 342 >ref|NP_277017.1| (NC_000916) biotin carboxylase [Methanothermobacter thermautotrophicus] sp|O27939|PYCA_METTH PYRUVATE CARBOXYLASE SUBUNIT A (PYRUVIC CARBOXYLASE A) pir||A69123 biotin carboxylase - Methanobacterium thermoautotrophicum (strain Delta H) gb|AAB86377.1| (AE000942) biotin carboxylase [Methanothermobacter thermautotrophicus] Length = 491 Score = 239 bits (609), Expect = 4e-62 Identities = 51/343 (14%), Positives = 117/343 (33%), Gaps = 23/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA-QVPGKHE 84 + +R ++ + + + + + Y + A + P + Sbjct: 1 MFSKILVANRGEIAIRVMRACRELGIKSVAVYSEADKNALFTRYADEAYEIGKPAPSQSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 ++ + I P +G L E+ L + +G A DK + Sbjct: 61 LRIDRILEVAEKAGAEAIHPG-YGFLAENPRLGEECEKQGIKLIGPKGSVIEAMGDKITS 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K+L++ AG+ + P ++ + + +G P+ +K + G +G+ V E++ Sbjct: 120 KKLMKKAGVPVIPGTDQGVSDPDEAA--RIADSIGYPVIIKASAGGGGIGMRAVYEEDEL 177 Query: 205 AIAVDLA------FEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A++ D V +E+ ++ R IE V+ +++ Sbjct: 178 IRAMESTQSVAASAFGDPTVYIEKYLERPRHIEFQVMADESGNVIHLA--DRECSIQRRH 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E + PE+ +++ + AV+A + +G V+ + + E+N Sbjct: 236 QKLIEE-----APSPIMTPELRERMGSAAVKAAEYIGYENAGTVEFLYS-NGDFYFLEMN 289 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P +G+ R+ R + Sbjct: 290 TRIQVEH----PITEVITGVDLVKEQIRVASGEELRFTQKDIN 328 >ref|NP_349497.1| (NC_003030) D-alanine-D-alanine ligase [Clostridium acetobutylicum] gb|AAK80837.1|AE007787_3 (AE007787) D-alanine-D-alanine ligase [Clostridium acetobutylicum] Length = 343 Score = 238 bits (608), Expect = 5e-62 Identities = 139/358 (38%), Positives = 217/358 (59%), Gaps = 20/358 (5%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K +V I+FGG+S EHEVS SA +++ ID S++D+ +GI K+G+W S + Sbjct: 2 KKKVAILFGGQSTEHEVSRVSAASVLRNIDTSKYDLFPIGITKKGEWFEYTGSADKIENG 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + S A + K VDV+FP++HG GEDG++QG+ ++ Sbjct: 62 EWEKDEFYKSPNGQAILFNK---------------EVDVVFPVMHGLYGEDGTIQGLCKL 106 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR---HNISFAEVESKLG 179 +P VG VL+S+ CMDK TK +L + A ++ + E+E+KLG Sbjct: 107 VGVPCVGPSVLSSSVCMDKVYTKYVLEHFNIKQADYVVVHAHEYKTSKEEIIKEIENKLG 166 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 +F+KP+N GSSVG++K + ++ ++ A ++D K++VE+ + REIE AVLGN+ P Sbjct: 167 YAVFIKPSNSGSSVGITKAHNRKELEAGLEEAMKYDRKILVEEALNAREIEVAVLGNEEP 226 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 +A+ GEIV +FY Y+ KY + +K+++PA ++ E +KI+ IA++ Y+ L C+GM+ Sbjct: 227 KAAIPGEIVPAKEFYDYEAKY-ENAASKLLIPANLSNENLEKIKNIAIEVYKALDCSGMS 285 Query: 300 RVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 RVD + + E+ +NE+NT+PGFT+ISMYPKLW A+G Y+ LI LIELA R+ A Sbjct: 286 RVDFLVDKDTTEMYLNEVNTIPGFTSISMYPKLWAAAGKDYSKLIDELIELAASRNNA 343 >ref|NP_437988.1| (NC_003078) putative propionyl-CoA carboxylase alpha chain protein [Sinorhizobium meliloti] emb|CAC49848.1| (AL603647) putative propionyl-CoA carboxylase alpha chain protein [Sinorhizobium meliloti] Length = 670 Score = 238 bits (606), Expect = 8e-62 Identities = 57/345 (16%), Positives = 115/345 (32%), Gaps = 22/345 (6%) Query: 24 AKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK- 82 + +R ++ I + + Y D H+ + A + P Sbjct: 2 GHMFKKILIANRGEIACRVIRTTKALGIPTVAVYSDADRDAMHVRMADEAVHIGPSPSSQ 61 Query: 83 HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKD 142 + + D + P +G L E+ + L + F+G V A A DK Sbjct: 62 SYIVIENILAAIRRTGADAVHPG-YGFLSENAAFAEALEKDGVTFIGPPVRAIEAMGDKI 120 Query: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEE 202 +K+L +AG+ P + + + +++G P+ +K + G G+ +E Sbjct: 121 TSKKLAAEAGVFTVPGHMGLIEDADEAA--RIAAEIGFPVMIKASAGGGGKGMRIAWNER 178 Query: 203 QYAIAVDLAF------EFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYA 255 + + D ++ +E+ + + R IE VLG+ + GE Sbjct: 179 EAREGFQSSRNEAKSSFGDDRIFIEKFVTEPRHIEIQVLGDKHGNILYLGER--ECSIQR 236 Query: 256 YDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINE 315 + K I+E + + + AV + +G V+ + E Sbjct: 237 RNQKVIEE-----APSPFLDEKTRRAMGEQAVALAKAVGYHSAGTVEFIVDAGRNFYFLE 291 Query: 316 INTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 +NT + P +GL + + R+ A A + Sbjct: 292 MNTRLQVEH----PVTELVTGLDLVEQMIRVAAGAKLAFAQKDVK 332 >gb|AAD41882.1|AF153050_3 (AF153050) D-alanine:D-lactate ligase [Enterococcus faecium] Length = 343 Score = 237 bits (605), Expect = 1e-61 Identities = 127/358 (35%), Positives = 205/358 (56%), Gaps = 20/358 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K++V ++FGG S EH VS++SA I ID ++ +GI K G W + + Sbjct: 1 MFKIKVAVLFGGCSEEHNVSIKSAMEIAANIDTKKYQPYYIGITKSGVWKMCEKPCLGWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQN-GQPLPTVDVIFPIVHGTLGEDGSLQGM 119 + P + H L+ ++ G + VDV+FP++HG GEDGS+QG+ Sbjct: 61 QYA---------GDPVVFSPDRSTHGLLIQKDTGYEIQPVDVVFPMIHGKFGEDGSIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L ++ +P+VG D+ +S CMDK + ++++AG+ + F L +R L Sbjct: 112 LELSGIPYVGCDIQSSVICMDKALAYTVVKNAGIAVPGFRILQEGDRLET------EDLV 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN- 238 P+FVKPA GSS GV+KV E+ A+ A ++D K+++E+ + G E+ CA+LGN+N Sbjct: 166 YPVFVKPARSGSSFGVNKVCKAEELQAAIREARKYDSKILIEEAVTGSEVGCAILGNEND 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDG---AKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 A +I L F+ + E G A + VPAA+ E+ ++IR A++ Y+ LGC Sbjct: 226 LMAGEVDQIELRHGFFKIHQEAQPEKGSENAVIRVPAALPDEVRERIRKTAMKIYRILGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+AR+D+FL + +V+NE+NT+PGFT+ S YP++ A+G ++++ RLIE +L R Sbjct: 286 RGLARIDLFLREDGCIVLNEVNTMPGFTSYSRYPRMMTAAGFTLSEILDRLIEFSLRR 343 >ref|NP_520908.1| (NC_003295) PROBABLE BIOTIN CARBOXYLASE PROTEIN [Ralstonia solanacearum] emb|CAD16494.1| (AL646071) PROBABLE BIOTIN CARBOXYLASE PROTEIN [Ralstonia solanacearum] Length = 456 Score = 237 bits (604), Expect = 1e-61 Identities = 54/342 (15%), Positives = 103/342 (29%), Gaps = 22/342 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 + +R ++ L + + Y + ++ L A + P Sbjct: 1 MFDKILIANRGEIALRIQRACRELGIKTVVVYSEADKEAKYVKLADEAVCIGPAPSPLSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + I P +G L E+ + + F+G DK Sbjct: 61 LNMPAIISAAEVTDAQAIHPG-YGFLSENADFAERVEQSGFTFIGPTPDCIRLMGDKVSA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K+ + +G+ P + K+G P+ +K A G G+ V +E Sbjct: 120 KQAMIKSGVPCVPGSEGALPDDPKE-ILATARKVGYPVIIKAAGGGGGRGMRVVHTEAAL 178 Query: 205 AIAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 AV + +V +E+ + R +E VL + + A GE Sbjct: 179 INAVNMTREEAGRAFGNPEVYMEKFLENPRHVEIQVLADQHRNAIWLGERD--CSMQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E I + ++I A + +G G + E E+N Sbjct: 237 QKVIEE-----APAPHIPRRLIERIGDRCADACKKIGYRGAGTFEFLY-ENGEFYFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 T + P +G+ R+ R + Sbjct: 291 TRVQVEH----PVTEMITGIDIVQEQIRVAANEKLRFRQKDV 328 >gb|AAH06915.1|AAH06915 (BC006915) Similar to Propionyl Coenzyme A carboxylase, alpha polypeptide [Mus musculus] Length = 724 Score = 237 bits (604), Expect = 2e-61 Identities = 56/344 (16%), Positives = 114/344 (32%), Gaps = 22/344 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKHEH 85 + +R ++ I + + + + H+ + A + P K Sbjct: 59 FDKILIANRGEIACRVIKTCKKMGIKTVAIHSDVDASSVHVKMADEAVCVGPAPTSKSYL 118 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + + P +G L E+ L ++ F+G D A A DK +K Sbjct: 119 NMDAIMEAIKKTRAQAVHPG-YGFLSENKEFAKRLAAEDVTFIGPDTHAIQAMGDKIESK 177 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 L + A +N P + + ++G P+ +K + G G+ +E+ Sbjct: 178 LLAKRAKVNTIPGFDGVVKDADE--AVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETR 235 Query: 206 IAV----DLAF--EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A D ++++E+ I R IE VLG+ + A E + Sbjct: 236 DGFRFSSQEAASSFGDDRLLIEKFIDNPRHIEIQVLGDKHGNALWLNER--ECSIQRRNQ 293 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K ++E + PE + AV + + + V+ + + E+NT Sbjct: 294 KVVEE-----APSIFLDPETRQAMGEQAVALAKAVKYSSAGTVEFLVDSQKNFYFLEMNT 348 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALKT 362 + P +GL + + + RH ++ + Sbjct: 349 RLQVEH----PVTECITGLDLVQEMILVAKGYPLRHKQEDIPIS 388 >ref|NP_372050.1| (NC_002758) acetyl-CoA carboxylase [Staphylococcus aureus subsp. aureus Mu50] ref|NP_374640.1| (NC_002745) acetyl-CoA carboxylase (biotin carboxylase subunit) accC [Staphylococcus aureus subsp. aureus N315] dbj|BAB42619.1| (AP003134) acetyl-CoA carboxylase accC [Staphylococcus aureus subsp. aureus N315] dbj|BAB57688.1| (AP003362) acetyl-CoA carboxylase [Staphylococcus aureus subsp. aureus Mu50] Length = 451 Score = 236 bits (603), Expect = 2e-61 Identities = 49/343 (14%), Positives = 109/343 (31%), Gaps = 23/343 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKH-EH 85 + + +R ++ + I + + Y D H + A + K Sbjct: 1 MKKVLIANRGEIAVRIIRACRDLGIQTVAIYSEGDKDALHTQIADEAYCVGPTLSKDSYL 60 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + + + D + P +G L E+ + L F+G + KDV K Sbjct: 61 NIPNILSIATSTGCDGVHPG-YGFLAENADFAELCEACQLKFIGPSYQSIQKMGIKDVAK 119 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 + A + + P + ++ K+G P+ +K G G+ E++ Sbjct: 120 AEMIKANVPVVPGSDGLMKD--VSEAKKIAKKIGYPVIIKATAGGGGKGIRVARDEKELE 177 Query: 206 ------IAVDLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 + + +E+ I R IE ++G+ GE Sbjct: 178 TGFRMTEQEAQTAFGNGGLYMEKFIENFRHIEIQIVGDSYGNVIHLGERD--CTIQRRMQ 235 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEIN 317 K ++E + E ++ AV+A + + ++ +N+ E+N Sbjct: 236 KLVEE-----APSPILDDETRREMGNAAVRAAKAVNYENAGTIEFIYDLNDNKFYFMEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P +G+ L ++ + + ++ Sbjct: 291 TRIQVEH----PVTEMVTGIDLVKLQLQVAMGDVLPYKQEDIK 329 >ref|NP_389706.1| (NC_000964) similar to biotin carboxylase [Bacillus subtilis] pir||E69893 biotin carboxylase homolog yngH - Bacillus subtilis emb|CAA74216.1| (Y13917) yngH [Bacillus subtilis] emb|CAB13707.1| (Z99113) similar to biotin carboxylase [Bacillus subtilis] Length = 444 Score = 236 bits (602), Expect = 3e-61 Identities = 56/344 (16%), Positives = 119/344 (34%), Gaps = 22/344 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV-PGKHE 84 + +R ++ + I + + + Y D H A + + + Sbjct: 1 MFTKVLIANRGEIAMRIIRTCSRLGIKTVAVYSEADKDAPHTKAATEAYLIGESRVSESY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D I P +G L E+ + N+ F+G A K Sbjct: 61 LNIERIIKTAKKAKADAIHPG-YGLLSENSRFAERCKQENIVFIGPSPDIIAKMGSKIEA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 ++ + AG+ + P ++ + + + S++G P+ +K + G +G+ +V +EE Sbjct: 120 RKAMEAAGVPVVPGVSESLGD--IEAACRTASQIGYPVMLKASAGGGGIGMQRVENEEAL 177 Query: 205 AIAVD------LAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A + F D + +E+ I+ R IE +L + + E Sbjct: 178 KKAYEGNKKRAADFFGDGSMYIEKVIEHARHIEVQLLADQHGHTVHLFERD--CSVQRRH 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E + E+ KI AV+A + +G ++ + + E+N Sbjct: 236 QKVIEE-----APSPFVDDELRMKIGQTAVKAAKAIGYTNAGTIEFIVDQKQNFYFLEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALK 361 T + P + +GL + R+ + + + Sbjct: 291 TRLQVEH----PVTEEITGLDLVEQQLRIAAGHTLTFSQKDIQR 330 >gb|AAG34684.1|AF310954_1 (AF310954) ligase VanB2 [Enterococcus faecium] Length = 342 Score = 236 bits (601), Expect = 3e-61 Identities = 127/358 (35%), Positives = 200/358 (55%), Gaps = 21/358 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V +FGG S EH+VS++SA I ID +FD +GI K G W + Sbjct: 1 MNRIKVATIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNG-QPLPTVDVIFPIVHGTLGEDGSLQGM 119 AD + P + H L+ + +DV FP++HG GEDG++QG+ Sbjct: 61 AD----------SLPAILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGL 110 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 111 FVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPE------AGALT 164 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS G++KV E+ A++ A ++D K+++EQ I G E+ CAV+GN+ + Sbjct: 165 YPVFVKPARAGSSFGLTKVNGTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDD 224 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDG---AKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L+ + + E G A + VPA I E ++++ A + Y+ LGC Sbjct: 225 LIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGC 284 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+ARVD+FL + +V+NE+NTLPGFT+ S YP++ A+G+ LI LI LAL+R Sbjct: 285 RGLARVDLFLQEDGGIVLNEVNTLPGFTSYSRYPRMMAAAGITLPALIDSLITLALKR 342 >gb|AAL02364.1| (AY046947) propionyl CoA-carboxylase alpha-subunit [Mus musculus] Length = 724 Score = 236 bits (601), Expect = 3e-61 Identities = 56/344 (16%), Positives = 114/344 (32%), Gaps = 22/344 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKHEH 85 + +R ++ I + + + + H+ + A + P K Sbjct: 59 FDKILIANRGEIACRVIKTCKKMGIKTVAIHSDVDASSVHVKMADEAVCVGPAPTSKSYL 118 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + + P +G L E+ L ++ F+G D A A DK +K Sbjct: 119 NMDAIMEAIKKTRAQAVHPG-YGFLSENKEFAKRLAAEDVTFIGPDTHAIQAMGDKIESK 177 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 L + A +N P + + ++G P+ +K + G G+ +E+ Sbjct: 178 LLAKRAKVNTIPGFDGVVKDADE--AVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETR 235 Query: 206 IAV----DLAF--EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A D ++++E+ I R IE VLG+ + A E + Sbjct: 236 DGFRFSSQEAASSFGDDRLLIEKFIDNPRHIEIQVLGDKHGNALWLNER--ECSIQRRNQ 293 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K ++E + PE + AV + + + V+ + + E+NT Sbjct: 294 KVVEE-----APSIFLDPETRQAMGEQAVALAKAVKYSSAGTVEFLVDSQKNFYFLEMNT 348 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALKT 362 + P +GL + + + RH ++ + Sbjct: 349 RLQVEH----PVTECITGLDLVQEMILVAKGYPLRHKQEDIPIS 388 >ref|NP_534077.1| (NC_003305) propionyl-coenzyme A carboxylase, alpha polypeptide [Agrobacterium tumefaciens str. C58 (U. Washington)] gb|AAL44393.1| (AE009288) propionyl-coenzyme A carboxylase, alpha polypeptide [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 677 Score = 236 bits (601), Expect = 4e-61 Identities = 58/344 (16%), Positives = 118/344 (33%), Gaps = 22/344 (6%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-H 83 + I + +R ++ I + ++ + Y + H+ + A + P Sbjct: 10 RMIKKILIANRGEIACRVIKTAKKMGIATVAVYSDADANALHVKMADEAVHIGPAPSSQS 69 Query: 84 EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + D + P +G L E+ + L A + F+G V A A DK Sbjct: 70 YIVIDKILEAIQKTGADAVHPG-YGFLSENAAFAQALEKAGVVFIGPPVGAIEAMGDKIT 128 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 +K+L AG++ P + ++ S++G P+ +K + G G+ +E + Sbjct: 129 SKKLAAKAGVSTVPGHMGLIEDADE--AVKIASQIGYPVMIKASAGGGGKGMRIAFNEAE 186 Query: 204 YAIAVDLAF------EFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 + D ++ +E+ + + R IE VLG+ + GE Sbjct: 187 AREGFQSSKNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDKHGTILYLGER--ECSIQRR 244 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEI 316 + K I+E + + AV + +G V+ + E E+ Sbjct: 245 NQKVIEE-----APSPFLDEATRHAMGEQAVALARAVGYHSAGTVEFIVDGERNFYFLEM 299 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 NT + P +G+ + + R+ A + Sbjct: 300 NTRLQVEH----PVTELVTGIDLVEQMIRVASGEKLSLAQGDVK 339 >sp|Q47823|DDL_ENTGA D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAB17903.1| (U39789) D-alanine:D-alanine ligase [Enterococcus gallinarum] Length = 316 Score = 235 bits (600), Expect = 4e-61 Identities = 118/320 (36%), Positives = 186/320 (57%), Gaps = 17/320 (5%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ +++GG+SAEH+VSL SA ++V+A+ + + V L+ I + GQW + + Sbjct: 1 MKIILLYGGRSAEHDVSLLSAFSVVNAVYYNYYQVQLVMITRDGQWLKGSLLTEAPTSKE 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + L SA Q G+ ++FP++HG GEDG++QG L Sbjct: 61 VLN--LTDSAYQGTP-----------IQPGEIKEEDAIVFPLLHGPNGEDGTIQGFLETI 107 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITL---TRANRHNISFAEVESKLGL 180 +P+VG+ VL SA MDK +TK +L+ AG+ P++ + F + E L Sbjct: 108 GMPYVGAGVLTSACGMDKIMTKYILQAAGIPQVPYVPVLKNYWKENPKKVFEQCEGSLLY 167 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+F+KPAN GSSVG++K + E+ A+ A+ +D + IVEQGI+ REIE AVLGN++ + Sbjct: 168 PMFIKPANMGSSVGITKAENREELQNALQEAYRYDTRAIVEQGIEAREIEVAVLGNEDVR 227 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 + GEIV FY Y++KY+D ++ +PA I E K + A +AY LG +G++R Sbjct: 228 TTMPGEIVKDVAFYDYNSKYLDNK-IEMQIPAQIPEETQAKAQEFAKKAYTMLGGSGLSR 286 Query: 301 VDVFLTPENEVVINEINTLP 320 D FLT +NE+ +NE+NT+P Sbjct: 287 CDFFLTNKNELFLNELNTIP 306 >gb|AAG34683.1|AF310953_1 (AF310953) ligase VanB2 [Enterococcus faecium] Length = 342 Score = 235 bits (599), Expect = 5e-61 Identities = 126/358 (35%), Positives = 200/358 (55%), Gaps = 21/358 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V +FGG S EH+VS++SA I ID +FD +GI K G W + Sbjct: 1 MNRIKVATIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNG-QPLPTVDVIFPIVHGTLGEDGSLQGM 119 AD + P + H L+ + +DV FP++HG GEDG++QG+ Sbjct: 61 AD----------SLPAILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGL 110 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 111 FVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPE------AGALT 164 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS G++KV E+ A++ A ++D K+++EQ I G E+ CAV+GN+ + Sbjct: 165 YPVFVKPARSGSSFGLTKVNGTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDD 224 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDG---AKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L+ + + E G A + VPA I E ++++ A + Y+ LGC Sbjct: 225 LIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGC 284 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+ARVD+FL + +V+NE+NTLPGFT+ S YP++ A+G+ +I LI LAL+R Sbjct: 285 RGLARVDLFLQEDGGIVLNEVNTLPGFTSYSRYPRMMAAAGITLPAMIDSLITLALKR 342 >ref|NP_253535.1| (NC_002516) biotin carboxylase [Pseudomonas aeruginosa] sp|P37798|ACCC_PSEAE BIOTIN CARBOXYLASE (A SUBUNIT OF ACETYL-COA CARBOXYLASE (ACC) pir||B49342 acetyl-CoA carboxylase (EC 6.4.1.2), biotin carboxylase - Pseudomonas aeruginosa pir||H83039 biotin carboxylase PA4848 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAA16041.1| (L14612) biotin carboxylase [Pseudomonas aeruginosa] gb|AAG08233.1|AE004898_4 (AE004898) biotin carboxylase [Pseudomonas aeruginosa] Length = 449 Score = 235 bits (599), Expect = 6e-61 Identities = 54/342 (15%), Positives = 108/342 (30%), Gaps = 22/342 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HE 84 + + +R ++ L + + + + + + H++L + + P Sbjct: 1 MLEKVLIANRGEIALRILRACKELGIKTVAVHSTADRELMHLSLADESVCIGPAPATQSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 Q+ + I P +G L E+ + + FVG DK Sbjct: 61 LQIPAIIAAAEVTGATAIHPG-YGFLAENADFAEQIERSGFTFVGPTAEVIRLMGDKVSA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K ++ AG+ P + + ++G P+ +K A G G+ V E + Sbjct: 120 KDAMKRAGVPTVPGSDGPLPED-EETALAIAREVGYPVIIKAAGGGGGRGMRVVYDESEL 178 Query: 205 AIAVDL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + L A + V +E+ + R +E VL + A G+ Sbjct: 179 IKSAKLTRTEAGAAFGNPMVYLEKFLTNPRHVEVQVLSDGQGNAIHLGDRD--CSLQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E I + ++ A VQA +G G + E+N Sbjct: 237 QKVIEE-----APAPGIDEKARQEVFARCVQACIEIGYRGAGTFEFLY-ENGRFYFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 T + P +G+ + R+ ++ Sbjct: 291 TRVQVEH----PVSEMVTGVDIVKEMLRIASGEKLSIRQEDV 328 >ref|NP_248224.1| (NC_000909) biotin carboxylase (accC) [Methanococcus jannaschii] sp|Q58626|PYCA_METJA PYRUVATE CARBOXYLASE SUBUNIT A (PYRUVIC CARBOXYLASE A) pir||D64453 biotin carboxylase (EC 6.3.4.14) - Methanococcus jannaschii gb|AAB99232.1| (U67563) biotin carboxylase (accC) [Methanococcus jannaschii] Length = 501 Score = 234 bits (597), Expect = 9e-61 Identities = 58/343 (16%), Positives = 117/343 (33%), Gaps = 23/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKHE 84 + +R ++ + I + + + Y H L A + P K Sbjct: 1 MFNKVLIANRGEIAIRIIRACWELGIKTVAVYSEADKRSLHATLADEAYCIGPAPAAKSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + N VD I P +G L E+ ++ A F+G + A A K Sbjct: 61 LNIDAILNVAEKAKVDAIHPG-YGFLAENAEFARAVKKAGFEFIGPNPDAIEAMGSKINA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K++++ AG+ + P + E+ +G P+ VK + G +G+S S+E+ Sbjct: 120 KKIMKKAGVPLIPGSEGAIED--IDEAIEIAEAIGFPVVVKASAGGGGMGMSVAYSKEEL 177 Query: 205 AIAVDLA------FEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 ++ A D V +E+ + R IE +LG+ + G Sbjct: 178 KEVIESARNIAKSAFGDPTVFIEKYLENPRHIEIQLLGDKHGNIIHLG--DRECSIQRRH 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E + E+ +++ A++A + + V+ E+N Sbjct: 236 QKLIEE-----APSPIMTEELRERMGEAAIKAGKAINYDSAGTVEFLY-ENGNFYFLEMN 289 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + Q +G+ + ++ ++ Sbjct: 290 TRIQVEHTV----TEQVTGIDLVKAMIKIAAGEELTLKQEDVK 328 >ref|NP_000273.1| (NM_000282) Propionyl-Coenzyme A carboxylase, alpha polypeptide precursor [Homo sapiens] ref|XP_049016.1| (XM_049016) Propionyl-Coenzyme A carboxylase, alpha polypeptide precursor [Homo sapiens] sp|P05165|PCCA_HUMAN PROPIONYL-COA CARBOXYLASE ALPHA CHAIN, MITOCHONDRIAL PRECURSOR (PCCASE ALPHA SUBUNIT) (PROPANOYL-COA:CARBON DIOXIDE LIGASE ALPHA SUBUNIT) pir||A27883 propionyl-CoA carboxylase (EC 6.4.1.3) alpha chain precursor - human emb|CAA32763.1| (X14608) propionyl-CoA carboxylase [Homo sapiens] gb|AAH00140.1|AAH00140 (BC000140) propionyl Coenzyme A carboxylase, alpha polypeptide [Homo sapiens] Length = 703 Score = 234 bits (597), Expect = 1e-60 Identities = 56/342 (16%), Positives = 112/342 (32%), Gaps = 22/342 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKHEH 85 + +R ++ I + + + + H+ + A + P K Sbjct: 38 FDKILVANRGEIACRVIRTCKKMGIKTVAIHSDVDASSVHVKMADEAVCVGPAPTSKSYL 97 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + + P +G L E+ L ++ F+G D A A DK +K Sbjct: 98 NMDAIMEAIKKTRAQAVHPG-YGFLSENKEFARCLAAEDVVFIGPDTHAIQAMGDKIESK 156 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 L + A +N P + + ++G P+ +K + G G+ +E+ Sbjct: 157 LLAKKAEVNTIPGFDGVVKDA--EEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETR 214 Query: 206 IAV----DLAF--EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A D ++++E+ I R IE VLG+ + A E + Sbjct: 215 DGFRLSSQEAASSFGDDRLLIEKFIDNPRHIEIQVLGDKHGNALWLNER--ECSIQRRNQ 272 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K ++E + E + AV + + + V+ + + E+NT Sbjct: 273 KVVEE-----APSIFLDAETRRAMGEQAVALARAVKYSSAGTVEFLVDSKKNFYFLEMNT 327 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + P +GL + R+ + RH + Sbjct: 328 RLQVEH----PVTECITGLDLVQEMIRVAKGYPLRHKQADIR 365 >ref|NP_357031.1| (NC_003063) AGR_L_580GMp [Agrobacterium tumefaciens] [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAK89816.1| (AE008324) AGR_L_580GMp [Agrobacterium tumefaciens str. C58 (Cereon)] Length = 667 Score = 234 bits (597), Expect = 1e-60 Identities = 58/343 (16%), Positives = 117/343 (33%), Gaps = 22/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HE 84 I + +R ++ I + ++ + Y + H+ + A + P Sbjct: 1 MIKKILIANRGEIACRVIKTAKKMGIATVAVYSDADANALHVKMADEAVHIGPAPSSQSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D + P +G L E+ + L A + F+G V A A DK + Sbjct: 61 IVIDKILEAIQKTGADAVHPG-YGFLSENAAFAQALEKAGVVFIGPPVGAIEAMGDKITS 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K+L AG++ P + ++ S++G P+ +K + G G+ +E + Sbjct: 120 KKLAAKAGVSTVPGHMGLIEDADE--AVKIASQIGYPVMIKASAGGGGKGMRIAFNEAEA 177 Query: 205 AIAVDLAF------EFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + D ++ +E+ + + R IE VLG+ + GE + Sbjct: 178 REGFQSSKNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDKHGTILYLGER--ECSIQRRN 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E + + AV + +G V+ + E E+N Sbjct: 236 QKVIEE-----APSPFLDEATRHAMGEQAVALARAVGYHSAGTVEFIVDGERNFYFLEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P +G+ + + R+ A + Sbjct: 291 TRLQVEH----PVTELVTGIDLVEQMIRVASGEKLSLAQGDVK 329 >gb|AAD19835.1| (AF060799) D-alanyl-D-alanine ligase [Amycolatopsis orientalis] Length = 348 Score = 234 bits (596), Expect = 1e-60 Identities = 122/355 (34%), Positives = 197/355 (55%), Gaps = 18/355 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +L++GI+FGG S EH +S++SA+ + +D +++ +GI + G W + D Sbjct: 1 MGRLKIGILFGGLSEEHPISIKSAREVQKHLDLEKYEPYYIGITQSGSWMLCDGPAEDWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 D L P + +DV+ P++HG GEDG++QG+L Sbjct: 61 NGDVRPAVLSPDRGVHGLLVLDEGK--------YETIALDVVLPVLHGKFGEDGAMQGLL 112 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 ++ +P+VG D+ +S C+DK +T ++R AG+ F +T N + L Sbjct: 113 EISGIPYVGCDLPSSVMCIDKSLTYSVVRGAGIATPTFHIVTPDNDVD------PDALNY 166 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-NP 239 P+FVKPA GSS GVSKV+S+E+ A+ A ++D K+++E+ + G EI C++LG+ + Sbjct: 167 PVFVKPARSGSSFGVSKVSSKEELPAALAEARQYDAKILIEEAVIGSEIGCSILGDGEDL 226 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 A + LT F+ + E G++ +VPA I D ++ A Y+ LGC+ Sbjct: 227 FAGEVDRVALTHGFFKIHQEKSPETGSENSSFIVPADIPDASRDLVQETAKVIYRALGCS 286 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 G+ARVD+FL + VV+NE+NTLPG T+ S YP++ A+GL D+I RL++L L Sbjct: 287 GLARVDLFLKEDGSVVLNEVNTLPGLTSYSRYPRMMNAAGLSLGDVIDRLVKLTL 341 >pir||A34337 propionyl-CoA carboxylase (EC 6.4.1.3) alpha chain precursor - rat (fragment) Length = 704 Score = 233 bits (595), Expect = 2e-60 Identities = 56/344 (16%), Positives = 114/344 (32%), Gaps = 22/344 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKHEH 85 + +R ++ I + + + + H+ + A + P K Sbjct: 39 FDKILIANRGEIACRVIKTCRKMGIRTVAIHSDVDASSVHVKMADEAVCVGPAPTSKSYL 98 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + + P +G L E+ L ++ F+G D A A DK +K Sbjct: 99 NMDAIMEAIKKTGAQAVHPG-YGFLSENKEFAKCLAAEDVTFIGPDTHAIQAMGDKIESK 157 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 L + A +N P + + ++G P+ +K + G G+ +E+ Sbjct: 158 LLAKRAKVNTIPGFDGVLKDADE--AVRIAREIGYPVMIKASAGGGGKGMRIPWDDEETR 215 Query: 206 IAV----DLAF--EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A D ++++E+ I R IE VLG+ + A E + Sbjct: 216 DGFRFSSQEAASSFGDDRLLIEKFIDNPRHIEIQVLGDKHGNALWLNER--ECSIQRRNQ 273 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K ++E + PE + AV + + + V+ + + E+NT Sbjct: 274 KVVEE-----APSIFLDPETRRAMGEQAVALAKAVKYSSAGTVEFLVDSQKNFYFLEMNT 328 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALKT 362 + P +GL + + + RH ++ + Sbjct: 329 RLQVEH----PVTECITGLDLVQEMILVAKGYPLRHKQEDIPIS 368 >gb|AAA60990.1| (L29638) ligase [Enterococcus casseliflavus] Length = 350 Score = 233 bits (595), Expect = 2e-60 Identities = 123/355 (34%), Positives = 182/355 (50%), Gaps = 9/355 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKS--RFDVVLLGIDK-QGQWHVSDASNYLLN 60 ++ I+FGG S E+ VSL SA + ++A+ S +D+ L+GI W++ + Sbjct: 2 KKIAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIR 61 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 D ++ E Q DV+FPI+HG GEDGS+QG+ Sbjct: 62 QDTWL-----LDTKHKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLF 116 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + LP+VG V SA CM+K + + G+ AP I LT G Sbjct: 117 ELMKLPYVGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGF 176 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+F KP GSS G++KVT E+ A A+ AF + V++++ I G EI C +LGND+ Sbjct: 177 PVFFKPNEAGSSKGITKVTCVEEIASALKEAFTYCSAVLLQKNIAGVEIGCGILGNDSLT 236 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 C I L F+ ++ KY AK+ VPA + I K++ A Y++LG G+AR Sbjct: 237 VGACDAISLVDGFFDFEEKYQ-LISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLAR 295 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 +D F+T E+ +NEINT+PGFT+ S YP + A GL Y +L+ +L+ LA E Sbjct: 296 IDFFVTERGELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLLVLAKEEVK 350 >ref|NP_103309.1| (NC_002678) D-alanine-D-alanine ligase A [Mesorhizobium loti] dbj|BAB49095.1| (AP002998) D-alanine-D-alanine ligase A [Mesorhizobium loti] Length = 357 Score = 233 bits (595), Expect = 2e-60 Identities = 159/360 (44%), Positives = 227/360 (62%), Gaps = 9/360 (2%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 EK RV I++GG+SAEH+VS SA N++ AID++R++VV + I + G+W + + Sbjct: 3 EKTRVAILYGGRSAEHDVSRLSAANVLKAIDRTRYEVVPIAISRDGRWRLQPS---SEAG 59 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 D A + +A +PG + +NG+ VDV+FP++HG GEDGS+QG Sbjct: 60 ADGAGAQVPEDGVEVALLPGGKGRLVALTKNGEQPDPVDVVFPVLHGPFGEDGSVQGYAE 119 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 VA++ +VG +LASAA MDKDV KRLLR+AGL +A +T+ + + SF E+ LGLP Sbjct: 120 VADVAYVGCGILASAAAMDKDVAKRLLREAGLAVARSVTVLKGD--VGSFQEIAGALGLP 177 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL--GNDNP 239 F KPA QGSS GVSKV + + AV+ A +D K ++E+ + GREIEC+VL + + Sbjct: 178 FFAKPARQGSSFGVSKVHDRDGFEQAVETALRYDSKALIEEFVDGREIECSVLERADGSL 237 Query: 240 QASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 S GEI+ FY Y+ KY D +GA V VPA + ++ + +A +A++ LGC Sbjct: 238 TVSPPGEIIPADKHGFYTYEAKYFDAEGAVVKVPADVPADVVARTSEMAARAFRALGCEA 297 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 MARVD FL + +++NE+NTLPGFT+ISMY K A+G+GY+ +I LIE AL RH A Sbjct: 298 MARVDFFLRADGSLLVNEVNTLPGFTDISMYAKALAAAGIGYSKVIDVLIEHALARHRAR 357 >pir||T06360 methylcrotonoyl-CoA carboxylase (EC 6.4.1.4) biotin carboxylase chain - soybean Length = 731 Score = 233 bits (594), Expect = 2e-60 Identities = 53/343 (15%), Positives = 110/343 (31%), Gaps = 23/343 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HEH 85 I + +R ++ + + + Y D H+A A + P + Sbjct: 33 IEKILVANRGEIACRITRTARRLGIQTVAVYSDADRDSLHVATADEAIRIGPPPARLSYL 92 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + I P +G L E + + L F+G A DK +K Sbjct: 93 NGASIVDAAIRSGAQAIHPG-YGFLSESADFAKLCEESGLTFIGPPASAIRDMGDKSASK 151 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 R++ AG+ + P ++ ++G P+ +KP + G G+ V + +++ Sbjct: 152 RIMGAAGVPLVPGYHGY--DQDIEKMKLEADRIGYPVLIKPTHGGGGKGMRIVHTPDEFV 209 Query: 206 IAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 + A + +++E+ I + R IE + G+ + E Sbjct: 210 ESFLAAQREAAASFGVNTILLEKYITRPRHIEVQIFGDKHGNVLHLYERD--CSVQRRHQ 267 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTP-ENEVVINEIN 317 K I+E I+ + ++ AV A + + V+ + +E E+N Sbjct: 268 KIIEE-----APAPNISADFRAQLGVAAVSAAKAVNYYNAGTVEFIVDTVSDEFYFMEMN 322 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P G + + + Sbjct: 323 TRLQVEH----PVTEMIVGQDLVEWQILVANGEALPLSQSQVP 361 >ref|NP_102581.1| (NC_002678) propionyl-CoA carboxylase alpha chain precursor [Mesorhizobium loti] dbj|BAB48367.1| (AP002996) propionyl-CoA carboxylase alpha chain precursor [Mesorhizobium loti] Length = 670 Score = 233 bits (594), Expect = 2e-60 Identities = 50/343 (14%), Positives = 108/343 (30%), Gaps = 22/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 + +R ++ I + ++ + Y D H+ + A + P + Sbjct: 1 MFTKILIANRGEIACRVIKTARKMGIATVAVYSDADRDAVHVEMADEAVHIGPSPAAQSY 60 Query: 86 QL-IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + P +G L E + L + F+G A A DK + Sbjct: 61 LVPEKIIAACKETGAQAVHPG-YGFLSERAAFCEALEKEGIVFIGPKPKAIKAMGDKIES 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K+ A ++ P N ++ ++G P+ +K + G G+ ++ + Sbjct: 120 KKFANAAKVSTVPGWLGVIENA--DHAEKIAGEIGYPVMIKASAGGGGKGMRIAWNQSEV 177 Query: 205 AIAVDLAF------EFDHKVIVEQG-IKGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 D A D +V +E+ + R IE VL + + A GE + Sbjct: 178 RDGFDRARSEAKSSFGDDRVFIEKFVVDPRHIEIQVLADAHGNALYLGER--ECSIQRRN 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K +E + + + +V + + V+ + + E+N Sbjct: 236 QKVAEE-----APSPFLDAKTRKAMGEQSVALARAVDYQSAGTVEFIVDKDKNFYFLEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P +G+ + + R+ + Sbjct: 291 TRLQVEH----PVTELVTGIDLVEQMIRVAAGEKLSLKQSDIK 329 >gb|AAD51060.1|AF175293_5 (AF175293) D-alanine:D-lactate ligase [Enterococcus faecium] Length = 343 Score = 232 bits (592), Expect = 4e-60 Identities = 125/358 (34%), Positives = 203/358 (55%), Gaps = 20/358 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V ++FGG S EH VS++SA I ID ++ +GI K G W + + Sbjct: 1 MFRIKVAVLFGGCSEEHNVSIKSAMEIAANIDTKKYQPYYIGITKSGVWKMCEKPCLEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQN-GQPLPTVDVIFPIVHGTLGEDGSLQGM 119 + P + H L+ ++ G + VDV P++HG GEDGS+QG+ Sbjct: 61 QYA---------GDPVVFSPDRSTHGLLIQKDTGYEIQPVDVGLPMIHGKFGEDGSIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 L ++ +P+VG D+ +S CMDK + ++++AG+ + F L +R Sbjct: 112 LELSGIPYVGCDIQSSVTCMDKALAYTVVKNAGIAVPGFRILQEGDRLET------EDFV 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN- 238 P+FVKPA GSS GV+KV E+ A++ A ++D K+++E+ + G E+ CA+LGN N Sbjct: 166 YPVFVKPARSGSSFGVNKVCKAEELQAAIEDARKYDSKILIEEAVTGSEVGCAILGNGND 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDG---AKVVVPAAIAPEINDKIRAIAVQAYQTLGC 295 A +I L F+ + E G A + VPAA+ E+ ++I+ A++ Y+ LGC Sbjct: 226 LMAGEVDQIELRHGFFKIHQEAQPEKGSENAVIRVPAALPDEVIERIQKTAMKIYRILGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+AR+D+FL + +V+NE+NT+PGFT+ S YP++ A+G T+++ RLIEL+L R Sbjct: 286 RGLARIDLFLREDGCIVLNEVNTMPGFTSYSRYPRMMTAAGFTLTEILDRLIELSLRR 343 >ref|NP_350153.1| (NC_003030) Biotin carboxylase [Clostridium acetobutylicum] gb|AAK81493.1|AE007853_8 (AE007853) Biotin carboxylase [Clostridium acetobutylicum] Length = 447 Score = 232 bits (591), Expect = 5e-60 Identities = 52/343 (15%), Positives = 111/343 (32%), Gaps = 22/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 I + +R ++ + I + + + Y + H+ L A + Sbjct: 1 MISKILIANRGEIAVRIIRACREMGIETVAIYSEADKESMHVYLADEAVCVGPAKTQDSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + L I P G L E+G M N+ F+G D +K Sbjct: 61 LNIGNIISATVLTKAQAIHPGF-GFLSENGKFAKMCSECNIAFIGPDAETIENMGNKAKA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + ++ AG+ + P T + +++G P+ +K + G G+ V E+ Sbjct: 120 REIMIKAGVPVVPGCEGTI--DSEDQALKEATRIGYPVMLKASAGGGGRGIRIVREEKDL 177 Query: 205 AIAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + A D + +E+ I + R +E +LG+ GE + Sbjct: 178 ISSFRNAKSEAKAAFGDDSMYMEKFIEEPRHVEFQILGDSFGNVVYLGERD--CSIQRRN 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E + E+ ++ AV+A + + ++ L E+N Sbjct: 236 QKVLEE-----APSPVMTEELRREMGEAAVRAAKAVNYKNAGTIEFLLDKHGNYYFMEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + +G+ ++ + Sbjct: 291 TRIQVEHG----ITEMVTGVDLVKEQIKIASGNKLSFNQSDIK 329 >ref|NP_300241.1| (NC_002491) biotin carboxylase [Chlamydophila pneumoniae J138] ref|NP_445129.1| (NC_002179) acetyl-coenzyme A carboxylase, biotin carboxylase [Chlamydophila pneumoniae AR39] pir||G81560 acetyl-coenzyme A carboxylase, biotin carboxylase CP0586 [imported] - Chlamydophila pneumoniae (strain AR39) gb|AAF38404.1| (AE002217) acetyl-coenzyme A carboxylase, biotin carboxylase [Chlamydophila pneumoniae AR39] dbj|BAA98392.1| (AP002545) biotin carboxylase [Chlamydophila pneumoniae J138] Length = 454 Score = 231 bits (590), Expect = 6e-60 Identities = 58/342 (16%), Positives = 116/342 (32%), Gaps = 22/342 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV-PGKHEH 85 + + +R ++ + I +S + Y L + H+ L A + + K Sbjct: 1 MKKVLIANRGEIAVRIIRACHDLGLSTVAVYSLADQEALHVLLADEAICIGEPQAAKSYL 60 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 ++ + + D + P +G L E+ + + L F+G + A DK K Sbjct: 61 KISNILAACEITGADAVHPG-YGFLSENANFASICESCGLTFIGPSSESIAMMGDKIAAK 119 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 L + + P + ++ K+G P+ +K G G+ V ++++ Sbjct: 120 SLAKKIKCPVIPGSEGIIEDESE--GLKIAEKIGFPIVIKAVAGGGGRGIRIVKEKDEFY 177 Query: 206 IAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A A + V +E+ I R +E V+G+ + GE Sbjct: 178 RAFSAARAEAEAGFNNPNVYIEKFIENPRHLEIQVIGDTHGNYVHLGERD--CTIQRRRQ 235 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K I+E + EI K+ IAV ++ G + V+ L + + E+NT Sbjct: 236 KLIEE-----TPSPILNAEIRVKVGKIAVDLARSAGYFSVGTVEFLLDKDKKFYFMEMNT 290 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + + +G+ + N Sbjct: 291 RIQVEHT----ITEEVTGIDLVKEQIHVAMGNKLPWKQKNIE 328 >ref|NP_254123.1| (NC_002516) probable biotin carboxylase subunit of a transcarboxylase [Pseudomonas aeruginosa] pir||G82966 probable biotin carboxylase subunit of a transcarboxylase PA5436 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG08821.1|AE004956_5 (AE004956) probable biotin carboxylase subunit of a transcarboxylase [Pseudomonas aeruginosa] Length = 471 Score = 231 bits (589), Expect = 9e-60 Identities = 57/341 (16%), Positives = 109/341 (31%), Gaps = 22/341 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 I + +R ++ + + + + + Y H+ A S+ P Sbjct: 1 MIKKILIANRGEIAVRIVRACAEMGIRSVAVYSEADRHALHVKRADEAHSIGADPLAGYL 60 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 N D + P +G L E+ L + + F+G DK + Sbjct: 61 NPRALVNLAVESGCDALHPG-YGFLSENAELAEICAERGIKFIGPSAQVIRRMGDKTEAR 119 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 R + AG+ P A+ ++G P+ +K + G G+ + S E+ Sbjct: 120 RSMIAAGVPCTPGTEGNVADLAE--ALREAERIGYPVMLKATSGGGGRGIRRCNSREELE 177 Query: 206 IAVDLA------FEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A +V +E+ I + IE +L + E + Sbjct: 178 QAFPRVISEATKAFGSAEVFLEKCIVNPKHIEAQILADSFGNTVHLFERD--CSIQRRNQ 235 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K I+ + + PE I +AV+A + +G V+ L + EV E+NT Sbjct: 236 KLIE-----IAPSPQLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLL-ADGEVYFMEMNT 289 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 + + +G+ R+ D+ Sbjct: 290 RVQVEHT----ITEEITGIDVVREQIRIASGLELSVKQDDI 326 >gb|AAB31500.1| (S72370) pyruvate carboxylase; pyruvate:carbon dioxide ligase [Homo sapiens] Length = 1178 Score = 231 bits (588), Expect = 1e-59 Identities = 51/346 (14%), Positives = 106/346 (29%), Gaps = 26/346 (7%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ--VPGKHE 84 I + +R ++ + + + + Y H A + + P + Sbjct: 37 IKKVMVANRGEIAIRVFRACTELGIRTVAIYSEQDTGQMHRQKADEAYLIGRGLAPVQAY 96 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D VD + P +G L E + A + F+G DK Sbjct: 97 LHIPDIIKVAKENNVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEA 155 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + + AG+ + P E + G P+ K A G G+ V S E+ Sbjct: 156 RAIAIAAGVPVVPGTDAPIT--SLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEEL 213 Query: 205 AIAVDLA------FEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A + + VE+ I+ R IE +LG+ E Sbjct: 214 EENYTRAYSEAWPAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERD--CSIQRRH 271 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ + A + P++ ++ + +V+ + +G V+ + + E+N Sbjct: 272 QKVVE-----IAPAAHLDPQLRTRLTSDSVKLAKQVGYENAGTVEFLVDRHGKHYFIEVN 326 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH---AADNAL 360 + + + + + + E +N Sbjct: 327 SRLQVEHTV----TEEITDVDLVHAQIHVAEGRSLPDLGLRQENIR 368 >ref|NP_224391.1| (NC_000922) Biotin Carboxylase [Chlamydophila pneumoniae CWL029] pir||E72110 biotin carboxylase - Chlamydophila pneumoniae (strain CWL029) gb|AAD18335.1| (AE001604) Biotin Carboxylase [Chlamydophila pneumoniae CWL029] Length = 454 Score = 231 bits (588), Expect = 1e-59 Identities = 57/342 (16%), Positives = 116/342 (33%), Gaps = 22/342 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV-PGKHEH 85 + + +R ++ + I +S + Y L + H+ L A + + K Sbjct: 1 MKKVLIANRGEIAVRIIRACHDLGLSTVAVYSLADQEALHVLLADEAICIGEPQAAKSYL 60 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 ++ + + D + P +G L E+ + + L F+G + A DK K Sbjct: 61 KISNILAACEITGADAVHPG-YGFLSENANFASICESCGLTFIGPSSESIAMMGDKIAAK 119 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 L + + P + ++ K+G P+ +K G G+ V ++++ Sbjct: 120 SLAKKIKCPVIPGSEGIIEDESE--GLKIAEKIGFPIVIKAVAGGGGRGIRIVKEKDEFY 177 Query: 206 IAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A A + V +E+ I R +E V+G+ + GE Sbjct: 178 RAFSAARAEAEAGFNNPNVYIEKFIENPRHLEIQVIGDTHGNYVHLGERD--CTIQRRRQ 235 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K I+E + EI K+ +AV ++ G + V+ L + + E+NT Sbjct: 236 KLIEE-----TPSPILNAEIRVKVGKVAVDLARSAGYFSVGTVEFLLDKDKKFYFMEMNT 290 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + + +G+ + N Sbjct: 291 RIQVEHT----ITEEVTGIDLVKEQIHVAMGNKLPWKQKNIE 328 >sp|P11498|PYC_HUMAN Pyruvate carboxylase, mitochondrial precursor (Pyruvic carboxylase) (PCB) gb|AAA99537.1| (U04641) pyruvate: carbon-dioxide ligase (ADP-forming) [Homo sapiens] gb|AAH11617.1|AAH11617 (BC011617) pyruvate carboxylase [Homo sapiens] prf||2023166A pyruvate carboxylase [Homo sapiens] Length = 1178 Score = 231 bits (588), Expect = 1e-59 Identities = 52/346 (15%), Positives = 107/346 (30%), Gaps = 26/346 (7%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ--VPGKHE 84 I + +R ++ + + + + Y H A + + P + Sbjct: 37 IKKVMVANRGEIAIRVFRACTELGIRTVAIYSEQDTGQMHRQKADEAYLIGRGLAPVQAY 96 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D VD + P +G L E + A + F+G DK Sbjct: 97 LHIPDIIKVAKENNVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEA 155 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + + AG+ + P E + G P+ K A G G+ V S E+ Sbjct: 156 RAIAIAAGVPVVPGTDAPIT--SLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEEL 213 Query: 205 AIAV------DLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 LA + + VE+ I+ R IE +LG+ E Sbjct: 214 EENYTRAYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERD--CSIQRRH 271 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ + A + P++ ++ + +V+ + +G V+ + + E+N Sbjct: 272 QKVVE-----IAPAAHLDPQLRTRLTSDSVKLAKQVGYENAGTVEFLVDRHGKHYFIEVN 326 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH---AADNAL 360 + + + + + + E +N Sbjct: 327 SRLQVEHTV----TEEITDVDLVHAQIHVAEGRSLPDLGLRQENIR 368 >ref|NP_036876.1| (NM_012744) pyruvate carboxylase [Rattus norvegicus] sp|P52873|PYC_RAT Pyruvate carboxylase, mitochondrial precursor (Pyruvic carboxylase) (PCB) gb|AAA96256.1| (U32314) pyruvate carboxylase [Rattus norvegicus] Length = 1178 Score = 231 bits (588), Expect = 1e-59 Identities = 51/346 (14%), Positives = 106/346 (29%), Gaps = 26/346 (7%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ--VPGKHE 84 I + +R ++ + + + + Y H A + + P + Sbjct: 37 IKKVMVANRGEIAIRVFRACTELGIRTVAVYSEQDTGQMHRQKADEAYLIGRGLAPVQAY 96 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D VD + P +G L E + A + F+G DK Sbjct: 97 LHIPDIIKVAKENGVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEA 155 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + + AG+ + P E + G P+ K A G G+ V S E+ Sbjct: 156 RAIAIAAGVPVVPGT--NSPINSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEEL 213 Query: 205 AIAV------DLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 LA + + VE+ I+ R IE +LG+ E Sbjct: 214 EENYTRAYPEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERD--CSIQRRH 271 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ + + P++ ++ + +V+ + +G V+ + + E+N Sbjct: 272 QKVVE-----IAPATHLDPQLRSRLTSDSVKLAKQVGYENAGTVEFLVDKHGKHYFIEVN 326 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH---AADNAL 360 + + + + + + E +N Sbjct: 327 SRLQVEHTV----TEEITDVDLVHAQIHVSEGRSLPDLGLRQENIR 368 >pir||S68252 pyruvate carboxylase (EC 6.4.1.1) precursor - rat pir||JC4391 pyruvate carboxylase (EC 6.4.1.1) precursor - rat gb|AAC52668.1| (U36585) pyruvate carboxylase [Rattus norvegicus] Length = 1178 Score = 231 bits (588), Expect = 1e-59 Identities = 51/346 (14%), Positives = 106/346 (29%), Gaps = 26/346 (7%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ--VPGKHE 84 I + +R ++ + + + + Y H A + + P + Sbjct: 37 IKKVMVANRGEIAIRVFRACTELGIRTVAVYSEQDTGQMHRQKADEAYLIGRGLAPVQAY 96 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D VD + P +G L E + A + F+G DK Sbjct: 97 LHIPDIIKVAKENGVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEA 155 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + + AG+ + P E + G P+ K A G G+ V S E+ Sbjct: 156 RAIAIAAGVPVVPGT--NSPINSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEEL 213 Query: 205 AIAV------DLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 LA + + VE+ I+ R IE +LG+ E Sbjct: 214 EENYTRAYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERD--CSIQRRH 271 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ + + P++ ++ + +V+ + +G V+ + + E+N Sbjct: 272 QKVVE-----IAPATHLDPQLRSRLTSDSVKLAKQVGYENAGTVEFLVDKHGKHYFIEVN 326 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH---AADNAL 360 + + + + + + E +N Sbjct: 327 SRLQVEHTV----TEEITDVDLVHAQIHVSEGRSLPDLGLRQENIR 368 >gb|AAF32338.1|AF218939_6 (AF218939) acetyl-CoA carboxylase [Bacillus subtilis] Length = 430 Score = 230 bits (587), Expect = 1e-59 Identities = 60/330 (18%), Positives = 117/330 (35%), Gaps = 22/330 (6%) Query: 40 LLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV-PGKHEHQLIDAQNGQPLPT 98 + I + + A+ Y D H A + + + + Sbjct: 1 MRIIRTCSRLGIKTAAVYSEADRDALHTKAATEAYYIGESRVSESYLNIERIIEAAKKAN 60 Query: 99 VDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPF 158 D I P +G L E+ + N+ F+G A K ++ + +AG+ + P Sbjct: 61 ADAIHPG-YGLLSENSRFAQRCKEENIVFIGPSPAVIAKIGSKIKARKAMEEAGVPVVPG 119 Query: 159 ITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVD------LAF 212 ++ + + + S++G P+ +K + G +G+ V EE A + F Sbjct: 120 VSESLGD--IQAACLAASEIGYPVMLKASAGGGGIGMQLVPDEEALIKAYEGNKKRAADF 177 Query: 213 EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVP 271 D + +E+ I+ R IE +L + + A E K I+E Sbjct: 178 FGDGSMYIEKVIEHARHIEIQILADHHGHAVHLFERD--CSVQRRHQKVIEE-----APS 230 Query: 272 AAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKL 331 + E+ KI AV+A + +G A ++ + E+NT + P Sbjct: 231 PFVDDELRMKIGETAVKAAKAIGYANAGTIEFLVDENKNFYFLEMNTRLQVEH----PVT 286 Query: 332 WQASGLGYTDLITRLIELALERHAADNALK 361 + +GL + R+ E R + + + Sbjct: 287 EEITGLDLVEQQLRVAEGQTLRFSQQDIKR 316 >sp|Q9ZGN0|DDL_MYCSM D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAC99396.1| (AF077728) D-alanine:D-alanine ligase [Mycobacterium smegmatis] Length = 373 Score = 230 bits (586), Expect = 2e-59 Identities = 152/363 (41%), Positives = 216/363 (58%), Gaps = 16/363 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 + RV +V+GG+S+EH +S SA +I+ +D RF+VV +GI G W ++D L Sbjct: 10 RTRVAVVYGGRSSEHAISCVSAGSILRNLDPERFEVVAIGITPDGSWVLTDGRPETLAIT 69 Query: 63 D---PAHIALRPSATSLAQVPGKHEHQLI-DAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118 D PA + +L P + L G+ L VDV+FP++HG GEDG++QG Sbjct: 70 DGKLPAVTEASGTELALPAAPNRSGQLLALGNGPGEILAAVDVVFPVLHGPYGEDGTIQG 129 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 +L +A +P+VGS VLASAA MDK+ TK+LL GL I + L E +L Sbjct: 130 LLELAGVPYVGSGVLASAAGMDKEYTKKLLAAEGLPIGDQVVLRPGVETLD--LEQRERL 187 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 GLP+FVKPA GSS+GVS+VT+ ++ AV LA D KVIVE + GRE+EC VL + Sbjct: 188 GLPVFVKPARGGSSIGVSRVTAWDELPAAVALARRHDPKVIVEAAVIGRELECGVLEFPD 247 Query: 239 PQ--------ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 + G FY + TKY++ D A++ VPA + ++ D+IR +AV+A+ Sbjct: 248 GRLEASTVGEIRVAGVRGREDGFYDFATKYLE-DAAELDVPAKVDDDVADEIRQLAVRAF 306 Query: 291 QTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 +GC G+ARVD FLT + VINEINT+PGFT ISMYP++W A G+ Y L+ +++ A Sbjct: 307 TAIGCQGLARVDFFLTDDG-PVINEINTMPGFTTISMYPRMWAAGGIDYPTLLAAMVDTA 365 Query: 351 LER 353 + R Sbjct: 366 IAR 368 >ref|NP_032823.1| (NM_008797) pyruvate decarboxylase [Mus musculus] sp|Q05920|PYC_MOUSE Pyruvate carboxylase, mitochondrial precursor (Pyruvic carboxylase) (PCB) pir||A47255 pyruvate carboxylase (EC 6.4.1.1) precursor [similarity] - mouse gb|AAA39737.1| (L09192) pyruvate carboxylase [Mus musculus] Length = 1178 Score = 229 bits (585), Expect = 2e-59 Identities = 51/346 (14%), Positives = 106/346 (29%), Gaps = 26/346 (7%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ--VPGKHE 84 I + +R ++ + + + + Y H A + + P + Sbjct: 37 IKKVMVANRGEIAIRVFRACTELGIRTVAVYSEQDTGQMHRQKADEAYLIGRGLAPVQAY 96 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D VD + P +G L E + A + F+G DK Sbjct: 97 LHIPDIIKVAKENGVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEA 155 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + + AG+ + P E + G P+ K A G G+ V S E+ Sbjct: 156 RAIAIAAGVPVVPGTD--SPISSLHEAHEFSNTFGFPIIFKAAYGGGGRGMRVVHSYEEL 213 Query: 205 AIAV------DLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 LA + + VE+ I+ R IE +LG+ E Sbjct: 214 EENYTRAYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERD--CSIQRRH 271 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ + + P++ ++ + +V+ + +G V+ + + E+N Sbjct: 272 QKVVE-----IAPATHLDPQLRSRLTSDSVKLAKQVGYENAGTVEFLVDKHGKHYFIEVN 326 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH---AADNAL 360 + + + + + + E +N Sbjct: 327 SRLQVEHTV----TEEITDVDLVHAQIHVSEGRSLPDLGLRQENIR 368 >ref|NP_000911.1| (NM_000920) pyruvate carboxylase precursor [Homo sapiens] ref|NP_071504.1| (NM_022172) pyruvate carboxylase precursor [Homo sapiens] pir||G01933 pyruvate carboxylase (EC 6.4.1.1) precursor - human pir||JC2460 pyruvate carboxylase (EC 6.4.1.1) precursor - human gb|AAA82937.1| (U30891) pyruvate carboxylase precursor [Homo sapiens] Length = 1178 Score = 229 bits (585), Expect = 2e-59 Identities = 52/346 (15%), Positives = 107/346 (30%), Gaps = 26/346 (7%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ--VPGKHE 84 I + +R ++ + + + + Y H A + + P + Sbjct: 37 IKKVMVANRGEIAIRVFRACTELGIRTVAIYSEQDTGQMHRQKADEAYLIGRGLAPVQAY 96 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D VD + P +G L E + A + F+G DK Sbjct: 97 LHIPDIIKVAKENNVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEA 155 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + + AG+ + P E + G P+ K A G G+ V S E+ Sbjct: 156 RAIAIAAGVPVVPGTDAPIT--SLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEEL 213 Query: 205 AIAV------DLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 LA + + VE+ I+ R IE +LG+ E Sbjct: 214 EENYTRAYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERD--CSIQRRH 271 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ + A + P++ ++ + +V+ + +G V+ + + E+N Sbjct: 272 QKVVE-----IAPAAHLDPQLRTRLTSDSVKLAKQVGYENAGTVEFLVDRHGKHYFIEVN 326 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH---AADNAL 360 + + + + + + E +N Sbjct: 327 SRLQVEHTV----TEEITDVDLVHAQIHVSEGRSLPDLGLRQENIR 368 >emb|CAA70282.1| (Y09061) acetyl-CoA carboxylase, biotin carboxylase subunit [Arabidopsis thaliana] Length = 539 Score = 229 bits (585), Expect = 2e-59 Identities = 52/338 (15%), Positives = 110/338 (32%), Gaps = 21/338 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ + I + + + Y D H+ L A + + P + +I Sbjct: 76 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADEAVCIGEAPSNQSYLVI 135 Query: 89 DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLL 148 + + +G L E+ M R + F+G + DK + + Sbjct: 136 PNVLSAAISRGCTMLHPGYGFLSENALFVEMCRDHGINFIGPNPDTIRVMGDKATARETM 195 Query: 149 RDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV 208 ++AG+ P + V +++G P+ + G G+ ++ + Sbjct: 196 KNAGVPTVPGSDGLL--QSTEEAVRVANEIGFPVMITATAGGGGRGMRLAKEPGEFVKLL 253 Query: 209 DL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYI 261 A + +E+ + R IE VL + GE + K + Sbjct: 254 QQAKSEAAAAFGNDGCYLEKFVQNPRHIEFQVLADKFGNVVHFGERD--CSIQRRNQKLL 311 Query: 262 DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG 321 +E A+ E+ + AV A ++G G+ V+ L E+NT Sbjct: 312 EE------PSPALTAELRKAMGDAAVAAAASIGYIGVGTVEFLLDXRGSFYFMEMNTRIQ 365 Query: 322 FTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 + P + + R+ R+ ++ Sbjct: 366 VEH----PVTEMIYSVDLIEEQIRVAMGEKLRYKQEDI 399 >gb|AAA88512.1| (M22631) alpha-propionyl-CoA carboxylase (EC 6.4.1.3) [Rattus norvegicus] Length = 721 Score = 229 bits (585), Expect = 3e-59 Identities = 56/344 (16%), Positives = 114/344 (32%), Gaps = 22/344 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKHEH 85 + +R ++ I + + + + H+ + A + P K Sbjct: 56 FDKILIANRGEIACRVIKTCRKMGIRTVAIHSDVDASSVHVKMADEAVCVGPAPTSKSYL 115 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + + P +G L E+ L ++ F+G D A A DK +K Sbjct: 116 NMDAIMEAIKKTGAQAVHPG-YGFLSENKEFAKCLAAEDVTFIGPDTHAIQAMGDKIESK 174 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 L + A +N P + + ++G P+ +K + G G+ +E+ Sbjct: 175 LLAKRAKVNTIPGFDGVLKDADE--AVRIAREIGYPVMIKASAGGGGKGMRIPWDDEETR 232 Query: 206 IAV----DLAF--EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A D ++++E+ I R IE VLG+ + A E + Sbjct: 233 DGFRFSSQEAASSFGDDRLLIEKFIDNPRHIEIQVLGDKHGNALWLNER--ECSIQRRNQ 290 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K ++E + PE + AV + + + V+ + + E+NT Sbjct: 291 KVVEE-----APSIFLDPETRRAMGEQAVAWPKAVKYSSAGTVEFLVDSQKNFYFLEMNT 345 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALKT 362 + P +GL + + + RH ++ + Sbjct: 346 RLQVEH----PVTECITGLDLVQEMILVAKGYPLRHKQEDIPIS 385 >gb|AAB92588.1| (AF038548) pyruvate carboxylase [Corynebacterium glutamicum] emb|CAA70739.1| (Y09548) pyruvate carboxylase [Corynebacterium glutamicum] Length = 1140 Score = 229 bits (584), Expect = 3e-59 Identities = 60/348 (17%), Positives = 112/348 (31%), Gaps = 26/348 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA--QVPGKH 83 + +R ++ + + + + Y H + A + P K Sbjct: 11 AFKKILVANRGEIAVRAFRAALETGAATVAIYPREDRGSFHRSFASEAVRIGTEGSPVKA 70 Query: 84 EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + + D I+P +G L E+ L + F+G DK Sbjct: 71 YLDIDEIIGAAKKVKADAIYPG-YGFLSENAQLARECAENGITFIGPTPEVLDLTGDKSR 129 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 + AGL + T +++ + P+FVK G G+ V S ++ Sbjct: 130 AVTAAKKAGLPVLAEST---PSKNIDEIVKSAEGQTYPIFVKAVAGGGGRGMRFVASPDE 186 Query: 204 YAIAV------DLAFEFDHKVIVEQG-IKGREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 A D V VE+ I + IE +LG+ + E Sbjct: 187 LRKLATEASREAEAAFGDGAVYVERAVINPQHIEVQILGDHTGEVVHLYERD--CSLQRR 244 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEI 316 K ++ + + PE+ D+I A AV+ +++G G V+ + + V E+ Sbjct: 245 HQKVVE-----IAPAQHLDPELRDRICADAVKFCRSIGYQGAGTVEFLVDEKGNHVFIEM 299 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELA--LERHAADNALKT 362 N + + + + RL A E + +KT Sbjct: 300 NPRIQVEHTV----TEEVTEVDLVKAQMRLAAGATLKELGLTQDKIKT 343 >ref|NP_293843.1| (NC_001263) acetyl-CoA carboxylase, biotin carboxylase subunit [Deinococcus radiodurans] pir||B75558 acetyl-CoA carboxylase, biotin carboxylase subunit - Deinococcus radiodurans (strain R1) gb|AAF09707.1|AE001874_4 (AE001874) acetyl-CoA carboxylase, biotin carboxylase subunit [Deinococcus radiodurans] Length = 445 Score = 229 bits (584), Expect = 3e-59 Identities = 50/343 (14%), Positives = 112/343 (32%), Gaps = 24/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA-QVPGKHE 84 + +R ++ L I + + Y + + L + + + Sbjct: 1 MFKKILIANRGEIALRVIRTAREMGIQTVVVYSTADEKSLPVLLADESVCVGPPASNQSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + + + I P +G + E+ M R + F+G + A K Sbjct: 61 LNIPNILSAALMTGAEAIHPG-YGFMAENPDFAEMCREHGIVFIGPTPESMRALGSKAGG 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + + + + P + + ++G P+ +K + G G + ++E+ Sbjct: 120 REIAAQSNVPTVPGTGVL---ESVDAALLAAKQIGYPVLLKASAGGGGRGQKVIRTQEEL 176 Query: 205 AIAVDLA------FEFDHKVIVEQGIKG-REIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + A + D +I+E+ ++ R IE V+G+ GE + Sbjct: 177 QKGFNQAQEEARLYFGDPAIIMEKFLEEFRHIEVQVMGDGQGHVIHIGERD--CSIQRRN 234 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E P+ + + +I A V+ Q + AG ++ + + E+N Sbjct: 235 QKLIEE------APSTLPESLRQEILAAGVRLAQFVNYAGAGTLEFIMDRDGNYYFMEMN 288 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + S L L + D+ Sbjct: 289 TRIQVEHCV----SEMISSLDLVRLQIEIAAGLGLNIQQDDVK 327 >ref|NP_220281.1| (NC_000117) UDP-N-acetylmuramate-alanine ligase and D-Ala-D-Ala Ligase [Chlamydia trachomatis] sp|O84767|MUDD_CHLTR MURC/DDL BIFUNCTIONAL ENZYME [INCLUDES: UDP-N-ACETYLMURAMATE--ALANINE LIGASE (UDP-N-ACETYLMURAMOYL-L-ALANINE SYNTHETASE); D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE)] pir||A71475 probable muramate-Ala ligase and D-Ala-D-Ala ligase - Chlamydia trachomatis (serotype D, strain UW3/Cx) gb|AAC68357.1| (AE001348) UDP-N-acetylmuramate-alanine ligase and D-Ala-D-Ala Ligase [Chlamydia trachomatis] Length = 803 Score = 229 bits (584), Expect = 4e-59 Identities = 111/369 (30%), Positives = 178/369 (48%), Gaps = 30/369 (8%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 KL +GI+ GGKS EHE+S+ SAKNI + KS +DV I ++G W Sbjct: 447 KLHLGIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITREGLW------------- 493 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + S + + D + Q L VDV+ PI+HG GEDG++QG L Sbjct: 494 ---------ESVSSLETAEDSGKSVFDPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLET 544 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT---RANRHNISFAEVESKLG 179 P+ G + SA M+K TKR + D G+ + P++ LT + A + Sbjct: 545 IGKPYTGPAIAFSAIAMNKVFTKRFMSDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAFS 604 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQ-GIKGREIECAVLGNDN 238 P+FVK ++ GSS+GV +V + + A++ AF D+ V VE+ + +EIE +VLG+ + Sbjct: 605 FPIFVKSSHLGSSIGVFEVHNVIELRDAINEAFMRDNDVFVEENRLGCKEIEVSVLGDGS 664 Query: 239 P--QASTCGEIVLTSDFYAYDTKY--IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 + E + F Y KY + A++V ++ EI ++I A + Y+ L Sbjct: 665 GAFVVAGLHERRGSGGFIDYQEKYGLSGKSSAQIVFDTDLSKEIQEQILEAADKIYRLLL 724 Query: 295 CAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 G R+D F+ E ++E+N +PG T S + + G Y ++ +L+ L+R Sbjct: 725 GKGSCRIDFFVDEEGNFWLSEMNPIPGMTETSPFLTSFIRKGWSYEQIVHQLVIDGLQRF 784 Query: 355 AADNALKTT 363 L +T Sbjct: 785 NQRQRLIST 793 >sp|P14882|PCCA_RAT PROPIONYL-COA CARBOXYLASE ALPHA CHAIN, MITOCHONDRIAL PRECURSOR (PCCASE ALPHA SUBUNIT) (PROPANOYL-COA:CARBON DIOXIDE LIGASE ALPHA SUBUNIT) Length = 704 Score = 229 bits (583), Expect = 4e-59 Identities = 56/344 (16%), Positives = 114/344 (32%), Gaps = 22/344 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKHEH 85 + +R ++ I + + + + H+ + A + P K Sbjct: 39 FDKILIANRGEIACRVIKTCRKMGIRTVAIHSDVDASSVHVKMADEAVCVGPAPTSKSYL 98 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + + P +G L E+ L ++ F+G D A A DK +K Sbjct: 99 NMDAIMEAIKKTGAQAVHPG-YGFLSENKEFAKCLAAEDVTFIGPDTHAIQAMGDKIESK 157 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 L + A +N P + + ++G P+ +K + G G+ +E+ Sbjct: 158 LLAKRAKVNTIPGFDGVLKDADE--AVRIAREIGYPVMIKASAGGGGKGMRIPWDDEETR 215 Query: 206 IAV----DLAF--EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A D ++++E+ I R IE VLG+ + A E + Sbjct: 216 DGFRFSSQEAASSFGDDRLLIEKFIDNPRHIEIQVLGDKHGNALWLNER--ECSIQRRNQ 273 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K ++E + PE + AV + + + V+ + + E+NT Sbjct: 274 KVVEE-----APSIFLDPETRRAMGEQAVAWPKAVKYSSAGTVEFLVDSQKNFYFLEMNT 328 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALKT 362 + P +GL + + + RH ++ + Sbjct: 329 RLQVEH----PVTECITGLDLVQEMILVAKGYPLRHKQEDIPIS 368 >ref|NP_302152.1| (NC_002677) D-alanine-D-alanine ligase A [Mycobacterium leprae] emb|CAC30631.1| (AL583923) D-alanine-D-alanine ligase A [Mycobacterium leprae] Length = 384 Score = 229 bits (583), Expect = 4e-59 Identities = 144/367 (39%), Positives = 212/367 (57%), Gaps = 20/367 (5%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 ++RV +VFGG+S EH VS SA +I+ +D+ RFDVV +GI +G W ++D + L Sbjct: 17 RVRVAVVFGGRSNEHAVSCLSAGSILRNLDRQRFDVVAVGITPEGTWMLTDPNPDALAIA 76 Query: 63 DPAHIALRPSATSLAQVPG--------KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDG 114 + A+ + +P G+ L +VDV+FP++HG GEDG Sbjct: 77 NRQLPAVSCESGIELTLPADPRRSGQLVSLSHGAGLGAGEVLTSVDVVFPVLHGPYGEDG 136 Query: 115 SLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 ++QG+L +A +P+VG+ VLASAA MDK+ TK+L GL ++ + L + Sbjct: 137 TIQGLLELARVPYVGAGVLASAAGMDKEFTKKLFAAEGLPLSAYTVLRPLRPTLH--RQE 194 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL 234 +L LP+FVKPA GSS+G+S+V+S Q A+ A D KVIVE + GRE+EC VL Sbjct: 195 CERLSLPVFVKPARGGSSIGISRVSSWGQLPSAIAYARRHDPKVIVEAAVNGRELECGVL 254 Query: 235 GNDNPQAST--------CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIA 286 + + G FY + TKY+D D A++ VPA + ++ D++R +A Sbjct: 255 EMPDGTVAASAVGEIRVAGVSGSEDSFYDFTTKYLD-DAAELDVPAKVDDDVADEVRQLA 313 Query: 287 VQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 +QA++ + C G+ARVD FLT + VINEINT+PGFT SMYPKLW S + Y L+ + Sbjct: 314 IQAFRAIDCQGLARVDFFLTDDG-PVINEINTMPGFTMTSMYPKLWAVSSVDYPTLLATM 372 Query: 347 IELALER 353 ++ AL R Sbjct: 373 VDTALAR 379 >ref|NP_219627.1| (NC_000117) Biotin Carboxylase [Chlamydia trachomatis] pir||H71553 probable biotin carboxylase - Chlamydia trachomatis (serotype D, strain UW3/Cx) gb|AAC67715.1| (AE001286) Biotin Carboxylase [Chlamydia trachomatis] Length = 457 Score = 229 bits (583), Expect = 4e-59 Identities = 57/342 (16%), Positives = 118/342 (33%), Gaps = 22/342 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV-PGKHEH 85 + + +R ++ + I ++ + Y + + H+ L A + + K Sbjct: 1 MKKVLIANRGEIAIRIIRACHDLGLATVAVYSMADQEALHVLLADEAVCIGEAQAAKSYL 60 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 ++ + + VD + P +G L E+ + + L F+G + A DK K Sbjct: 61 KIANILAACEITGVDAVHPG-YGFLSENANFASICESCGLTFIGPSAESIATMGDKVAAK 119 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 +L + + P + + K+G P+ +K G G+ V ++++ Sbjct: 120 QLAKKIKCPVIPGSEGVVKDEVE--GIRIAEKIGFPIVIKAVAGGGGRGIRIVREKDEFY 177 Query: 206 IAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A A + V +E+ I R +E V+G+ + GE Sbjct: 178 RAFTAARAEAEAGFNNPDVYIEKFIENPRHLEVQVIGDKHGNYVYLGERD--CTVQRRRQ 235 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K I+E + PE+ K+ +AV ++ G + V+ L E E+NT Sbjct: 236 KLIEE-----TPSPILTPEMRAKVGKVAVDLARSAGYFSVGTVEFLLDKEKRFYFMEMNT 290 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + + +G+ + + N Sbjct: 291 RIQVEHT----ITEEVTGIDLLKAQISVAKGEKLPWKQKNIK 328 >ref|NP_297342.1| (NC_002488) biotin carboxylase subunit of acetyl CoA carboxylase [Xylella fastidiosa 9a5c] pir||E82853 biotin carboxylase subunit of acetyl CoA carboxylase XF0049 [imported] - Xylella fastidiosa (strain 9a5c) gb|AAF82862.1|AE003859_3 (AE003859) biotin carboxylase subunit of acetyl CoA carboxylase [Xylella fastidiosa 9a5c] Length = 469 Score = 229 bits (583), Expect = 5e-59 Identities = 51/342 (14%), Positives = 109/342 (30%), Gaps = 22/342 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 + + +R ++ L + + + + + H+A+ + + P + Sbjct: 15 MLDKVVIANRGEIALRILRACHTLGIRTVAVHSTVDRNLKHVAMADESVCIGSAPSAESY 74 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + I P +G L E+ S + + F+G DK Sbjct: 75 LNIPALIAAAEVTDAQAIHPG-YGFLSENASFAERVEQSGFIFIGPRAETIRLMGDKVQA 133 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 ++ AG+ P + + + ++G P+ +K A G G+ V +E Sbjct: 134 IHAMKAAGVPCVPGSDGPLGDDIVANVK-IAREIGYPVIIKAAGGGGGRGMRVVHTEVGL 192 Query: 205 AIAVD------LAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A++ A + +V +E+ + R +E VL + A GE Sbjct: 193 KAAIETTQSEAKAAFGNGQVYMEKFLENPRHVEIQVLADGQGNAIHLGERD--CSMQRRH 250 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E I + ++I + V A +G G + E+N Sbjct: 251 QKVVEE-----APAPGITEALRNEIGQVCVDACIRIGYRGAGTFEFLF-ENGRFYFIEMN 304 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 T + P + +G+ R+ + Sbjct: 305 TRIQVEH----PVTERITGIDLVCEQLRIAAGQPLSIKQSDV 342 >ref|NP_357130.1| (NC_003063) AGR_L_2704p [Agrobacterium tumefaciens] [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAK89915.1| (AE008334) AGR_L_2704p [Agrobacterium tumefaciens str. C58 (Cereon)] Length = 709 Score = 229 bits (583), Expect = 5e-59 Identities = 60/339 (17%), Positives = 112/339 (32%), Gaps = 23/339 (6%) Query: 19 VSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ 78 S A + +R ++ I + + Y D H+AL A ++ Sbjct: 40 YSGCEATMFSKILIANRGEIACRIIRTAASMGIRTVAVYSDADRDAMHVALADEAIAIGP 99 Query: 79 VPGK-HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAA 137 P + + I P +G L E+ A L F+G A A Sbjct: 100 APARASYLDGEKIIAAAKASGAEAIHPG-YGFLSENAGFAEACASAGLVFIGPPPEAIRA 158 Query: 138 CMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSK 197 K K L+ AG+ I P + A K+G P+ +K + G G+ Sbjct: 159 MGGKSEAKALMATAGVPIVPGYHGD--EQAEKRLASEADKIGYPVLLKASAGGGGKGMRV 216 Query: 198 VTSEEQYAIAV------DLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLT 250 V + +A + LA + ++++E+ ++ R +E V + + + E Sbjct: 217 VRQKHDFAAELAGAKREALAAFGNDRMLIEKYLERPRHVEVQVFADGHGNCVSLFERD-- 274 Query: 251 SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENE 310 K I+E + ++ ++ A A + + G ++ L P Sbjct: 275 CSIQRRHQKVIEE-----APAPGLPDDLRQRMYDAATAAARAIDYRGAGTIEFLLDPSG- 328 Query: 311 VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 E+NT + P +GL + R+ Sbjct: 329 FYFMEMNTRLQVEH----PVTEYITGLDLVEWQLRVANG 363 >ref|NP_219107.1| (NC_000919) D-alanine--D-alanine ligase (ddlA) [Treponema pallidum] sp|O83676|DDL_TREPA D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||A71296 D-alanine--D-alanine ligase (EC 6.3.2.4) A ddlA - syphilis spirochete gb|AAC26568.1| (AE001241) D-alanine--D-alanine ligase (ddlA) [Treponema pallidum] Length = 396 Score = 228 bits (582), Expect = 5e-59 Identities = 126/347 (36%), Positives = 201/347 (57%), Gaps = 5/347 (1%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 V +++GG+SAEH+VS++SA+ + + + V+L+GI ++G W+ A Sbjct: 3 HVTLLYGGRSAEHDVSVRSARFVARTL-CLQHTVMLIGITRRGVWYAQPACALEQLCTGT 61 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 ++++ + G DV+FP++HG+ GEDG++QG+L + Sbjct: 62 VALSIQEDEKRRVCLVPGGGTAGAFVIAGM-PCVTDVVFPVLHGSYGEDGTVQGLLEMLQ 120 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR---HNISFAEVESKLGLP 181 +P+VG V ASA MDK K L + AGL + PF+ + A++E++LG P Sbjct: 121 VPYVGCGVCASALAMDKVKAKMLWQAAGLPVLPFVFFRKDAWRMHMQEFVAQLETRLGYP 180 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 LFVKPA GSSVG S V + A++ AF++D V+VE+ ++ REIECA+ GN Sbjct: 181 LFVKPAQAGSSVGASAVQTRAPLIPAIEAAFQWDEVVLVERYVRAREIECALSGNGPYTV 240 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 GE++ FY Y+ KY D A+V+V A + ++I +A++AY+ LG G+ARV Sbjct: 241 HGAGEVIAQGAFYDYEEKYADASVARVLVTAPLETAQYEQITTLALRAYEALGLTGLARV 300 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 D FL EV +NE+NT+PGFT+IS++P++ QA+G+ DL+ +L+ Sbjct: 301 DFFLLETGEVYVNEVNTMPGFTSISLFPQICQAAGVAPQDLMAQLLS 347 >ref|NP_104954.1| (NC_002678) pyruvate carboxylase [Mesorhizobium loti] dbj|BAB50740.1| (AP003003) pyruvate carboxylase [Mesorhizobium loti] Length = 1152 Score = 228 bits (582), Expect = 5e-59 Identities = 46/341 (13%), Positives = 106/341 (30%), Gaps = 30/341 (8%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG--- 81 I + +R ++ + + + + + H + + + P Sbjct: 1 MAITKILVANRSEIAIRVFRAANELGLKTVAIWAEEDKYSLHRFKADESYQVGRGPHLTK 60 Query: 82 -----KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASA 136 + + + L D I P +G L E A + F+G Sbjct: 61 DMGPIESYLSIEEVIRVARLSGADAIHPG-YGLLSESPEFAEACAQAGITFIGPKPDTMR 119 Query: 137 ACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVS 196 +K + L + G+ + P + ++ ++G P+ +K + G G+ Sbjct: 120 RLGNKVAARNLAIEVGVPVIPATDPLP--DDMEAVKKLAKEIGYPVMLKASWGGGGRGMR 177 Query: 197 KVTSEEQYAIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVL 249 + SE A V A +V +E+ I+ R +E VLG+ + A E Sbjct: 178 AIRSEADLAREVTEGKREAKAAFGKDEVYLEKLIERARHVEVQVLGDTHGNAVHLFERD- 236 Query: 250 TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE- 308 + K ++ + +++ A++ + G V+ + Sbjct: 237 -CSIQRRNQKVVE-----RAPAPYLEMSQREELCGYALKIARETSYIGAGTVEFLQDADT 290 Query: 309 NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 + E+N + Q +G+ +++ Sbjct: 291 GKFYFIEVNPRIQVEHTV----TEQVTGIDIVKAQIHILDG 327 >ref|NP_440997.1| (NC_000911) D-alanine:D-alanine ligase-related protein [Synechocystis sp. PCC 6803] sp|P73632|DDL_SYNY3 D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||S77119 D-alanine--D-alanine ligase (EC 6.3.2.4) A - Synechocystis sp. (strain PCC 6803) dbj|BAA17677.1| (D90908) D-alanine:D-alanine ligase-related protein [Synechocystis sp. PCC 6803] Length = 354 Score = 228 bits (582), Expect = 6e-59 Identities = 140/361 (38%), Positives = 208/361 (56%), Gaps = 27/361 (7%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAI----DKSRFDVVLLGIDKQGQWHVSDASNYLL 59 +RVG++FGG S EHEVS++SA+ I A+ +++++ V I K G W D S Sbjct: 1 MRVGLLFGGCSGEHEVSIKSAQAIAKALASDDNQTKYQVSPFYIQKNGVWLGPDVSQ--- 57 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 + P + + V FPI+HG GEDG++QG+ Sbjct: 58 --------QVLDQGVPWGDQPVTAGQRWQFPPEAARME---VWFPILHGPNGEDGTVQGL 106 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRH------NISFAE 173 + +P+VGS VL S MDK K + AGL ++ + R + Sbjct: 107 FSLMQVPYVGSGVLGSCVGMDKLAMKMVFERAGLPQVNYMGVERGEIWSNPCVFPALCEK 166 Query: 174 VESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGI-KGREIECA 232 +E+++G P FVKPAN GSSVG++KV + + A+D A +D ++IVE G+ RE+ECA Sbjct: 167 IEAQVGYPCFVKPANLGSSVGIAKVRNRSELEAALDNAASYDRRIIVEAGLTDIREVECA 226 Query: 233 VLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 VLGN+NPQAS GEI SDFY Y+TKY D ++ +PA + + ++I+ +A+QA++ Sbjct: 227 VLGNENPQASVVGEITYDSDFYDYETKYTDGRS-QMHIPANLPKAVVNQIQTMAIQAFKA 285 Query: 293 LGCAGMARVDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 + AG+ R+D F P ++VINEINTLPGFT SMYP+LW+ASG+ + L+ RL++LAL Sbjct: 286 VDAAGLGRLDFFYQPTTGQIVINEINTLPGFTAFSMYPELWRASGVEFPSLVDRLLQLAL 345 Query: 352 E 352 + Sbjct: 346 D 346 >ref|NP_337574.1| (NC_002755) D-alanine--D-alanine ligase [Mycobacterium tuberculosis CDC1551] gb|AAK47388.1| (AE007126) D-alanine--D-alanine ligase [Mycobacterium tuberculosis CDC1551] Length = 373 Score = 227 bits (578), Expect = 2e-58 Identities = 148/363 (40%), Positives = 215/363 (58%), Gaps = 16/363 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 ++RV +VFGG+S EH +S SA +I+ +D RFDV+ +GI G W ++DA+ L Sbjct: 10 RVRVAVVFGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTIT 69 Query: 63 DPAHIALRPSATSLAQVPG----KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118 + ++ + + +P + + G+ L +VDV+FP++HG GEDG++QG Sbjct: 70 NRELPQVKSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQG 129 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 +L +A +P+VG+ VLASA MDK+ TK+LL GL + + L + +L Sbjct: 130 LLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLH--RQECERL 187 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 GLP+FVKPA GSS+GVS+V+S +Q AV A D KVIVE I GRE+EC VL + Sbjct: 188 GLPVFVKPARGGSSIGVSRVSSWDQLPAAVARARRHDPKVIVEAAISGRELECGVLEMPD 247 Query: 239 PQ--------ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 G FY + TKY+D D A++ VPA + ++ + IR +A++A+ Sbjct: 248 GTLEASTLGEIRVAGVRGREDSFYDFATKYLD-DAAELDVPAKVDDQVAEAIRQLAIRAF 306 Query: 291 QTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + C G+ARVD FLT + VINEINT+PGFT ISMYP++W ASG+ Y L+ +IE A Sbjct: 307 AAIDCRGLARVDFFLTDDG-PVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIETA 365 Query: 351 LER 353 L R Sbjct: 366 LAR 368 >ref|NP_107983.1| (NC_002678) 3-methylcrotonyl-CoA carboxylase biotin-containing subunit [Mesorhizobium loti] dbj|BAB54128.1| (AP003012) 3-methylcrotonyl-CoA carboxylase biotin-containing subunit [Mesorhizobium loti] Length = 694 Score = 226 bits (577), Expect = 2e-58 Identities = 60/349 (17%), Positives = 113/349 (32%), Gaps = 27/349 (7%) Query: 24 AKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA-QVPGK 82 + +R ++ I + V + Y H+ + A + G+ Sbjct: 39 GSMFSKILIANRGEIACRVIRTARKMGVRTVAVYSDADAKSLHVEMADEAVHIGPPSVGE 98 Query: 83 HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKD 142 + I P +G L E+ + A L F+G + A KD Sbjct: 99 SYLRGDRIVAAALSTGAQAIHPG-YGFLSENPDFVDQVVAAGLTFIGPSAASIRAMGLKD 157 Query: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEE 202 KRL+ AG+ + P A ++G P+ +K G G+ +V + Sbjct: 158 AAKRLMEKAGVPVVPGYHGEAQEIVL--LASKAREIGYPVLIKARAGGGGKGMRRVEHPD 215 Query: 203 QYAIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYA 255 ++ A+ A D +V+VE+ + R IE V G++ A E Sbjct: 216 DFSEALSSARREAKAAFGDDRVLVEKYVDKPRHIEVQVFGDNFGNAVHLYERD--CSAQR 273 Query: 256 YDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE-----NE 310 K I+E + P + + AV+A + +G +G ++ + + Sbjct: 274 RHQKVIEE-----APAPGMTPALRKAMTEAAVKAAKAIGYSGAGTIEFIVDASQGLKPDR 328 Query: 311 VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 E+NT + P +G + R+ + Sbjct: 329 FWFMEMNTRLQVEH----PVTEMVTGTDLVEWQLRVASGEKLPNTQSEI 373 >dbj|BAB16297.1| (AB039884) acetyl-CoA carboxylase biotin carboxylase subunit [Myxococcus xanthus] Length = 573 Score = 226 bits (577), Expect = 2e-58 Identities = 62/341 (18%), Positives = 116/341 (33%), Gaps = 22/341 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQ 86 + +R ++ + I + S + + H+ A ++ P K + Sbjct: 4 FKKVLIANRGEIAVRVIRTCQRLGYSTVAVFSEADRGAPHVLAADEAVAIGPSPAKESYL 63 Query: 87 LID-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 +I + I P +G L E+ R A L F+G + A +K Sbjct: 64 VIGKILEAAKTSGAEAIHPG-YGFLSENADFARACRDAGLVFIGPEAEAITLMGNKRQAN 122 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 + AG+ P + + + A ++G PL VK A G G+ V Q Sbjct: 123 VRMIAAGVPCIPGYEASDLDD--EALAVEGERIGFPLMVKAAAGGGGRGMRLVHEASQLR 180 Query: 206 IAVDLA------FEFDHKVIVEQG-IKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A+ A ++I+E+ I R +E V + + GE Sbjct: 181 AALRAARSEATNAFGSGELILEKAVIDARHVEVQVFADTHGNVVHLGERD--CSVQRRHQ 238 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K ++E A++P + ++ +AV A + +G G ++ L P + E+NT Sbjct: 239 KIVEE-----SPSPAVSPALRARMGEVAVAAARAIGYRGAGTIEFLLAPSGDFYFMEMNT 293 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 + P +GL + R+ + Sbjct: 294 RLQVEH----PVTELITGLDLVEWQLRVAAGETLPRTQEAI 330 >ref|NP_243653.1| (NC_002570) acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus halodurans] dbj|BAB06506.1| (AP001516) acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus halodurans] Length = 452 Score = 226 bits (577), Expect = 2e-58 Identities = 59/344 (17%), Positives = 116/344 (33%), Gaps = 23/344 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 I + +R ++ + I + + + + D H+ + A + P K Sbjct: 1 MIKKLLVANRGEIAVRIIRACRELGIETVAVFSEADRDALHVRMADEAYCIGPTPSAKSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + L VD I P +G L E+ + N+ FVG A + KDV Sbjct: 61 LNFTNIMSVATLTEVDAIHPG-YGFLAENADFAEICGECNITFVGPSADAISKMGTKDVA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + ++ AG+ I P V ++G P+ +K G G+ +EE+ Sbjct: 120 RETMKRAGVPIVPGSEGII--ESVEDGLAVAEQIGYPVIIKATAGGGGKGIRVARNEEEL 177 Query: 205 AIAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + + V +E+ I R +E VL +++ GE Sbjct: 178 RKGINITQQEAATAFGNPGVYLEKYIEDFRHVEIQVLADNHGHVIHLGERD--CSIQRRL 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEI 316 K ++E AI + ++ AV A + + +G V+ + E+ Sbjct: 236 QKLLEE-----TPSPAITEKKRKEMGEAAVAAAKAVNYSGAGTVEFIYDHNNGDFYFMEM 290 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 NT + P +G+ ++ + ++ Sbjct: 291 NTRIQVEH----PVTEMVTGIDLIKEQIKVASGKPLSYKQEDVT 330 >emb|CAB87214.1| (AL163641) acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces coelicolor A3(2)] Length = 646 Score = 226 bits (576), Expect = 3e-58 Identities = 62/345 (17%), Positives = 112/345 (31%), Gaps = 24/345 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 + +R ++ + I V + + D H+ A + P + Sbjct: 1 MFDTVLVANRGEIAVRVIRTLRSMGVRSVAVFSDADADARHVREADDAVRIGPAPATESY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + P +G L E+ A L F+G A A DK Sbjct: 61 LSVERLLAAAARTGAQAVHPG-YGFLAENAGFARACEEAGLVFIGPSADAIALMGDKIRA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K +R AG+ + P + + + A+ ++G P+ +KP+ G G+ V Sbjct: 120 KETVRAAGVPVVPGSSGSGL--TDEQLADAAREIGTPVLLKPSAGGGGKGMRLVRDTAVL 177 Query: 205 AIAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A + A D ++VE+ I R IE VL + + GE Sbjct: 178 ADEIAAARREARASFGDDTLLVERWIDRPRHIEIQVLADGHGGVVHLGER--ECSLQRRH 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPEN--EVVINE 315 K I+E + + AVQA ++ G G V+ + + + E Sbjct: 236 QKVIEE-----APSVLLDEATRAAMGEAAVQAARSCGYRGAGTVEFIVPGSDPSQYYFME 290 Query: 316 INTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 +NT + P +GL + R+ ++ Sbjct: 291 MNTRLQVEH----PVTELVTGLDLVEWQLRVAAGEPLGFGQEDVR 331 >ref|NP_217497.1| (NC_000962) ddlA [Mycobacterium tuberculosis H37Rv] sp|P95114|DDL_MYCTU D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||B70673 probable ddlA - Mycobacterium tuberculosis (strain H37RV) emb|CAB05431.1| (Z83018) ddlA [Mycobacterium tuberculosis H37Rv] Length = 373 Score = 226 bits (576), Expect = 3e-58 Identities = 147/363 (40%), Positives = 214/363 (58%), Gaps = 16/363 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 ++RV +VFGG+S EH +S SA +I+ +D RFDV+ +GI G W ++DA+ L Sbjct: 10 RVRVAVVFGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTIT 69 Query: 63 DPAHIALRPSATSLAQVPG----KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118 + ++ + + +P + + G+ L +VDV+FP++HG GEDG++QG Sbjct: 70 NRELPQVKSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQG 129 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 +L +A +P+VG+ VLASA MDK+ TK+LL GL + + L + +L Sbjct: 130 LLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLH--RQECERL 187 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 GLP+FVKPA GSS+GVS+V+S +Q AV A D KVIVE I GRE+EC VL + Sbjct: 188 GLPVFVKPARGGSSIGVSRVSSWDQLPAAVARARRHDPKVIVEAAISGRELECGVLEMPD 247 Query: 239 PQ--------ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 G FY + TKY+D D A++ VPA + ++ + IR +A++A+ Sbjct: 248 GTLEASTLGEIRVAGVRGREDSFYDFATKYLD-DAAELDVPAKVDDQVAEAIRQLAIRAF 306 Query: 291 QTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + C G+ARVD FLT + VINEINT+PGFT ISMYP++W ASG+ Y L+ +IE Sbjct: 307 AAIDCRGLARVDFFLTDDG-PVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIETT 365 Query: 351 LER 353 L R Sbjct: 366 LAR 368 >ref|NP_355659.1| (NC_003062) AGR_C_4940p [Agrobacterium tumefaciens] [Agrobacterium tumefaciens str. C58 (Cereon)] ref|NP_533391.1| (NC_003304) pyruvate carboxylase [Agrobacterium tumefaciens str. C58 (U. Washington)] gb|AAK88444.1| (AE008185) AGR_C_4940p [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAL43707.1| (AE009219) pyruvate carboxylase [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 1174 Score = 226 bits (575), Expect = 4e-58 Identities = 43/362 (11%), Positives = 109/362 (29%), Gaps = 31/362 (8%) Query: 6 VGIVFGG-KSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 V +++ + ++ I + +R ++ + + + + + Sbjct: 2 VLLLYSAVQQNSVLACGETVLKISKILVANRSEIAIRVFRAANELGIKTVAIWAEEDKLS 61 Query: 65 AHIALRPSATSLAQVPG--------KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 H + + + P + + + L D I P +G L E Sbjct: 62 LHRFKADESYQVGRGPHLAKDMGPIESYLSIEEVIRVAKLSGADAIHPG-YGLLSESPEF 120 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 A + F+G +K + L + + P + Sbjct: 121 VEACNKAGITFIGPTPDTMRQLGNKVAARNLAISVDVPVVP--ATNPLPDDIAEVERMAE 178 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDL------AFEFDHKVIVEQGIK-GREI 229 ++G P+ +K + G G+ + +E A V A +V +E+ ++ R + Sbjct: 179 EIGYPVMLKASWGGGGRGMRAIRKKEDLAREVTEAKREAKAAFGKDEVYLEKLVERARHV 238 Query: 230 ECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 E +LG+ + E + K ++ ++ ++ A +++ Sbjct: 239 ESQILGDTHGNVVHLFERD--CSIQRRNQKVVE-----RAPAPYLSEAQRQELAAYSLKI 291 Query: 290 YQTLGCAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 G V+ + + + E+N + +G+ ++E Sbjct: 292 AAATNYIGAGTVEYLMDADTGKFYFIEVNPRIQVEHTV----TEVVTGIDIVKAQIHILE 347 Query: 349 LA 350 A Sbjct: 348 GA 349 >ref|NP_296778.1| (NC_002620) acetyl-coenzyme A carboxylase, biotin carboxylase [Chlamydia muridarum] pir||D81708 acetyl-coenzyme A carboxylase, biotin carboxylase TC0400 [imported] - Chlamydia muridarum (strain Nigg) gb|AAF39257.1| (AE002306) acetyl-coenzyme A carboxylase, biotin carboxylase [Chlamydia muridarum] Length = 457 Score = 226 bits (575), Expect = 4e-58 Identities = 57/342 (16%), Positives = 116/342 (33%), Gaps = 22/342 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV-PGKHEH 85 + + +R ++ + I +S + Y + + H+ L A + + K Sbjct: 1 MKKVLIANRGEIAVRIIRACHDLGLSTVAIYSVADQEALHVLLADEAVCIGEAQAAKSYL 60 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 ++ + + D + P +G L E+ + + L F+G + A DK K Sbjct: 61 KIANILAACEITGADAVHPG-YGFLSENANFASICESCGLTFIGPSAESIATMGDKVAAK 119 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 +L + + P + + K+G P+ +K G G+ V ++++ Sbjct: 120 QLAKKIKCPVIPGSDGVVKDEVE--GIRIAEKIGFPIVIKAVAGGGGRGIRIVREKDEFY 177 Query: 206 IAVDLAF------EFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A A + V +E+ I R +E V+G+ GE Sbjct: 178 RAFTAARAEAESGFNNPDVYIEKFIENPRHLEVQVIGDKYGNYVYLGERD--CTVQRRRQ 235 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K I+E + PE+ K+ +AV ++ G + V+ L E E+NT Sbjct: 236 KLIEE-----TPSPILTPEMRAKVGKVAVDLARSAGYFSVGTVEFLLDAEKRFYFMEMNT 290 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + + +G+ + + N Sbjct: 291 RIQVEHT----ITEEITGIDLLKAQISVAKGEKLPWKQKNIE 328 >sp|Q9ZBR9|DDL_STRCO D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||T35644 D-alanine-D-alanine ligase - Streptomyces coelicolor emb|CAA22403.1| (AL034447) D-alanine-D-alanine ligase [Streptomyces coelicolor A3(2)] Length = 389 Score = 225 bits (574), Expect = 4e-58 Identities = 128/368 (34%), Positives = 203/368 (54%), Gaps = 18/368 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVS--DASNYLLN 60 K RV +VFGG+S+EH +S+ +A ++ AID++R+DV+ +GI + G+W ++ + + Sbjct: 20 KPRVAVVFGGRSSEHGISVVTAGAVLAAIDRTRYDVLPIGITRDGRWALTADEPERMAIT 79 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNG-----QPLPTVDVIFPIVHGTLGEDGS 115 + +T + + + L VDV+FP++HG GEDG+ Sbjct: 80 ERRTPDVEELAESTEGGVLLPVDPANREVVYSEPGSVPKALGEVDVVFPVLHGPYGEDGT 139 Query: 116 LQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR------HNI 169 LQG+L ++ +P+VG+ VLASA DK+ K + GL + P+ + Sbjct: 140 LQGLLELSGVPYVGAGVLASAVGQDKEYMKAVFTSYGLKVGPYAVIRPREWEQDRSGARK 199 Query: 170 SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 + + G PLFVKPA GSS+G++KV A++ A D K++VE ++GREI Sbjct: 200 KIVDFAGEHGWPLFVKPARAGSSIGITKVDDLAGLDEAIEEARRHDPKILVEAALRGREI 259 Query: 230 ECAVLGNDNPQASTCGEIVLT---SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIA 286 EC VL ++ ++ + +Y ++ KYID V P + E +++ +A Sbjct: 260 ECGVLEFEDGPRASVPAEIPPPSEHAYYDFEAKYIDSTPGIVPAP--LTAEETAEVQRLA 317 Query: 287 VQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 V A+ C G+ R D FLT ++E VINEINT+PGFT ISMYP++WQASG+ Y +L+ RL Sbjct: 318 VAAFDAASCEGLVRADFFLTEDDEFVINEINTMPGFTPISMYPQMWQASGVSYPELVDRL 377 Query: 347 IELALERH 354 ++ AL R Sbjct: 378 VQAALRRP 385 >gb|AAF09095.1|AF068759_1 (AF068759) pyruvate carboxylase [Lactococcus lactis subsp. lactis] Length = 1137 Score = 225 bits (574), Expect = 4e-58 Identities = 52/339 (15%), Positives = 107/339 (31%), Gaps = 25/339 (7%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSL--AQVPGKHE 84 + + +R ++ + + +S + Y + H + + + P Sbjct: 1 MKKLLVANRGEIAVRVFRACNELGLSTVAVYAREDEYSVHRFKADESYLIGQGKKPIDAY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D D I P +G L E+ +R A L FVG ++ DK Sbjct: 61 LDIDDIIRVALESGADAIHPG-YGLLSENLEFATKVRAAGLVFVGPELHHLDIFGDKIKA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K +A + P T E G P+ +K A G G+ ++ + Sbjct: 120 KAAADEAQVPGIPG---TNGAVDIDGALEFAQTYGYPVMIKAALGGGGRGMRVARNDAEM 176 Query: 205 AIAVDLA------FEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A ++ VE+ I + IE +LG+ + E + Sbjct: 177 HDGYARAKSEAIGAFGSGEIYVEKYIENPKHIEVQILGDSHGNIVHLHERD--CSVQRRN 234 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+ + ++PE ++I AV+ + +G V+ + +++ E+N Sbjct: 235 QKVIE-----IAPAVGLSPEFRNEICEAAVKLCKNVGYVNAGTVEFLV-KDDKFYFIEVN 288 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 + +G+ + + Sbjct: 289 PRVQVEHT----ITELITGVDIVQAQILIAQGKDLHTEI 323 >gb|AAG37836.1|AF295372_1 (AF295372) pyruvate carboxylase [Danio rerio] Length = 1180 Score = 225 bits (574), Expect = 5e-58 Identities = 51/332 (15%), Positives = 99/332 (29%), Gaps = 23/332 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ--VPGKHE 84 I + +R ++ + + + + Y H A + + P Sbjct: 39 IKKVMVANRGEIAIRVFRACTELGIRTVAVYSEQDTGQMHRQKADEAYLIGRGLSPVAAY 98 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D VD I P +G L E A + F+G DK Sbjct: 99 LHIPDIIKVAKENNVDAIHPG-YGFLSERADFAQACAEAGVRFIGPSPEVVRKMGDKVEA 157 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + L AG+ + P + E P+ K A G G+ V + E+ Sbjct: 158 RALAIKAGVPVVPGTDAPISC--LQEAQEFAKTYDFPIIFKAAYGGGGRGMRVVRNYEEL 215 Query: 205 AIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A + + VE+ I+ R IE +LG+ E Sbjct: 216 EENYQRAYSEALAAFGNGALFVEKFIEKPRHIEVQILGDKYGNVIHLYERD--CSIQRRH 273 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ + A + + D++ +V + +G V+ + + E+N Sbjct: 274 QKVVE-----IAPAAHLDSHLRDRLTLDSVNLAKQVGYENAGTVEFLVDKHGKHYFIEVN 328 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 + + + + + R+ E Sbjct: 329 SRLQVEHTV----TEEITDVDLVHAQLRVCEG 356 >ref|NP_009767.1| (NC_001134) Urea amidolyase (contains urea carboxylase and allophanate hydrolase); Dur1,2p [Saccharomyces cerevisiae] sp|P32528|DUR1_YEAST UREA AMIDOLYASE [INCLUDES: UREA CARBOXYLASE ; ALLOPHANATE HYDROLASE ] pir||S46082 urea carboxylase (EC 6.3.4.6) - yeast (Saccharomyces cerevisiae) emb|CAA85172.1| (Z36077) ORF YBR208c [Saccharomyces cerevisiae] Length = 1835 Score = 225 bits (573), Expect = 6e-58 Identities = 57/340 (16%), Positives = 107/340 (30%), Gaps = 24/340 (7%) Query: 30 AIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKH-EHQLI 88 + +R ++ + I + + + Y H+ + L + Sbjct: 636 VLIANRGEIAVRIIKTLKKLGIRSVAVYSDPDKYSQHVTDADVSVPLHGTTAAQTYLDMN 695 Query: 89 DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLL 148 + I P +G L E+ A + FVG K +++ Sbjct: 696 KIIDAAKQTNAQAIIPG-YGFLSENADFSDACTSAGITFVGPSGDIIRGLGLKHSARQIA 754 Query: 149 RDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV 208 + AG+ + P L +V ++L P+ VK G +G+ KV SEE Sbjct: 755 QKAGVPLVPGSLLIT---SVEEAKKVAAELEYPVMVKSTAGGGGIGLQKVDSEEDIEHIF 811 Query: 209 D------LAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYI 261 + F D V +E+ I R +E ++G+ +A GE + K I Sbjct: 812 ETVKHQGETFFGDAGVFLERFIENARHVEVQLMGDGFGKAIALGERD--CSLQRRNQKVI 869 Query: 262 DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEINTLP 320 +E + + +R A L V+ ++E E+NT Sbjct: 870 EE-----TPAPNLPEKTRLALRKAAESLGSLLNYKCAGTVEFIYDEKKDEFYFLEVNTRL 924 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + P +GL + + R+ + Sbjct: 925 QVEH----PITEMVTGLDLVEWMIRIAANDAPDFDSTKVE 960 >ref|NP_214048.1| (NC_000918) pyruvate carboxylase n-terminal domain [Aquifex aeolicus] pir||A70432 biotin carboxylase (EC 6.3.4.14) [similarity] - Aquifex aeolicus gb|AAC07446.1| (AE000744) pyruvate carboxylase n-terminal domain [Aquifex aeolicus] Length = 472 Score = 225 bits (573), Expect = 6e-58 Identities = 53/342 (15%), Positives = 109/342 (31%), Gaps = 21/342 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 + +R ++ + I + + + Y H+ L A + P Sbjct: 1 MFNKVLVANRGEIAVRIIRACKELGIPTVAIYNEVESTARHVKLADEAYMIGTDPLDTYL 60 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 N D I P +G L E+ M A + F+G DK +K Sbjct: 61 NKQRIINLALEVGADAIHPG-YGFLAENAEFAKMCEEAGITFIGPHWKVIELMGDKARSK 119 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 +++ AG+ + P + ++G P+ +K G G+ +EE+ Sbjct: 120 EVMKKAGVPVVPGSDGVLK--SLEEAKALAREIGYPVLLKATAGGGGRGIRICRNEEELV 177 Query: 206 IAVDLA------FEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 + A +++E+ I + IE VLG+ + GE + Sbjct: 178 KNYEQASREAEKAFGRGDLLLEKFIENPKHIEYQVLGDKHGNVIHLGERD--CSIQRRNQ 235 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K ++ + + PE + I +A + +G ++ E + E+NT Sbjct: 236 KLVE-----IAPSLILTPEKREYYGNIVTKAAKEIGYYNAGTMEFIADQEGNLYFIEMNT 290 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + P +G+ ++ ++ Sbjct: 291 RIQVEH----PVSEMVTGIDIVKWQIKIAAGEPLTIKQEDVK 328 >ref|NP_387384.1| (NC_003047) PROBABLE PYRUVATE CARBOXYLASE PROTEIN [Sinorhizobium meliloti] emb|CAC47857.1| (AL591793) PROBABLE PYRUVATE CARBOXYLASE PROTEIN [Sinorhizobium meliloti] Length = 1152 Score = 224 bits (572), Expect = 7e-58 Identities = 37/341 (10%), Positives = 98/341 (27%), Gaps = 30/341 (8%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG--- 81 +I + +R ++ + + + + + H + + + P Sbjct: 1 MSISKILVANRSEIAIRVFRAANELGLKTVAIWAEEDKLALHRFKADESYQVGRGPHLPR 60 Query: 82 -----KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASA 136 + + L D I P +G L E + F+G Sbjct: 61 DLGPIMSYLSIDEVIRVAKLSGADAIHPG-YGLLSESPEFAEACAANGITFIGPKPETMR 119 Query: 137 ACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVS 196 +K + L G+ + P + ++G P+ +K + G G+ Sbjct: 120 QLGNKVAARNLAISIGVPVVPATEPLP--DDPEEIKRLAEEIGYPVMLKASWGGGGRGMR 177 Query: 197 KVTSEEQYAIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVL 249 + + V A +V +E+ ++ R +E +LG+ + E Sbjct: 178 AIRDPKDLIREVTEAKREAKAAFGKDEVYLEKLVERARHVESQILGDTHGNVVHLFERD- 236 Query: 250 TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE- 308 + K ++ + ++ +++ + G V+ + + Sbjct: 237 -CSIQRRNQKVVE-----RAPAPYLNDAQRQELADYSLKIARATNYIGAGTVEYLMDSDT 290 Query: 309 NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 + E+N + +G+ +++ Sbjct: 291 GKFYFIEVNPRIQVEHTV----TEVVTGIDIVKAQIHILDG 327 >ref|NP_470397.1| (NC_003212) highly similar to pyruvate carboxylase [Listeria innocua] emb|CAC96291.1| (AL596167) highly similar to pyruvate carboxylase [Listeria innocua] Length = 1146 Score = 224 bits (572), Expect = 8e-58 Identities = 55/344 (15%), Positives = 103/344 (28%), Gaps = 24/344 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATS--LAQVPGKHE 84 I + +R ++ + + + + + Y H A + P Sbjct: 4 IKKVLVANRGEIAIRVMRACTELKIKTVAIYSQEDTGSFHRYKSDEAYLVGAGKKPIDAY 63 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + D I P +G L E+ + FVG DK Sbjct: 64 LDIENIIEIAKESGADAIHPG-YGFLSENIEFARRCEQEGIIFVGPKSKHLDMFGDKIKA 122 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K A + + P A E K G PL +K + G G+ V S+E Sbjct: 123 KEQALLADIPVIPGSDGPVAG--IKEVEEFGEKNGYPLMIKASLGGGGRGMRVVESKEHV 180 Query: 205 AIAVDL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + + A + +V VE+ + + IE +LG+ + E Sbjct: 181 KESFERASSEAKAAFGNDEVYVEKCVMNPKHIEVQILGDTHGNIVHLFERD--CSIQRRH 238 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ V AI E+ ++I AV+ + + V+ + +N E+N Sbjct: 239 QKVVE-----VAPCNAITSELRNRICDAAVKLMKNVDYINAGTVEFLVEGDN-FYFIEVN 292 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALK 361 + +G+ + + K Sbjct: 293 PRVQVEHT----ITEMITGIDIVQSQLFIADGYALHDQLVAIPK 332 >ref|NP_505977.1| (NM_073576) pyruvate carboxylase [Caenorhabditis elegans] pir||T20346 pyruvate carboxylase (EC 6.4.1.1) D2023.2 [similarity] - Caenorhabditis elegans emb|CAB02872.1| (Z81052) predicted using Genefinder~Similarity to Human pyruvate carboxylase (TR:G458236), contains similarity to Pfam domain: PF00289 (Carbamoyl-phosphate synthase (CPSase)), Score=572.0, E-value=1.3e-168, N=1; PF00364 (Biotin-requiring enzymes), Scor> gb|AAF60326.1|AF237467_1 (AF237467) pyruvate carboxylase [Caenorhabditis elegans] Length = 1175 Score = 224 bits (571), Expect = 1e-57 Identities = 54/347 (15%), Positives = 112/347 (31%), Gaps = 24/347 (6%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV--PGK 82 + + +R ++ + + + + + Y + H A + + P Sbjct: 30 REFNKVMVANRGEIAIRVFRALTELNKTSVAIYAEQDKNSMHRLKADEAYLVGKGLPPVA 89 Query: 83 HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKD 142 + +D I P +G L E + A + F+G A DK Sbjct: 90 AYLTIDQIIETALKHNIDAIHPG-YGFLSERSDFAAACQNAGIVFIGPSPDVMARMGDKV 148 Query: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEE 202 ++ +AG+ + P E + G P+ +K A G G+ +V E Sbjct: 149 AARQAAIEAGVQVVPGTPGPIT--TADEAVEFAKQYGTPIILKAAYGGGGRGIRRVDKLE 206 Query: 203 QYAIAV------DLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYA 255 + A A D + VE+ ++ R IE +LG+ + E Sbjct: 207 EVEEAFRRSYSEAQAAFGDGSLFVEKFVERPRHIEVQLLGDHHGNIVHLYERD--CSVQR 264 Query: 256 YDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINE 315 K ++ + A+ + +KI A A++ + +G V+ + + E Sbjct: 265 RHQKVVE-----IAPAPALPEGVREKILADALRLARHVGYQNAGTVEFLVDQKGNYYFIE 319 Query: 316 INTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALKT 362 +N + + +G+ R+ E + +T Sbjct: 320 VNARLQVEHTV----TEEITGVDLVQAQIRIAE-GKSLDDLKLSQET 361 >pir||T43735 pyruvate carboxylase (EC 6.4.1.1) [validated] - yellow fever mosquito gb|AAB64306.1| (L36530) pyruvate carboxylase [Aedes aegypti] Length = 1195 Score = 224 bits (571), Expect = 1e-57 Identities = 53/343 (15%), Positives = 104/343 (29%), Gaps = 26/343 (7%) Query: 30 AIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ--VPGKHEHQL 87 + +R ++ + + + + Y H + + + P + + Sbjct: 41 VLVANRGEIAIRVFRACNELGIRSVAVYSEQDKMHMHRQKADESYMVGKGLAPVEAYLSI 100 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + VD + P +G L E + A L F+G DK ++ Sbjct: 101 PEIIRVCKENDVDAVHPG-YGFLSERSDFAQAVIDAGLRFIGPSPKVVQQMGDKVAARKA 159 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 +AG+ I P + K GLP+ K A G G+ V E+ Sbjct: 160 AIEAGVPIVPGTDGPVT--TKEEALDFCKKHGLPVIFKAAYGGGGRGMRVVRKMEEVEDN 217 Query: 208 VDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A + + +E+ I+ R IE +LG+ E K Sbjct: 218 FQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERD--CSVQRRHQKV 275 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++ + + E+ DK+ AV+ + +G V+ E+N Sbjct: 276 VE-----IAPAPRLPREVRDKMTEYAVKLAKHVGYENAGTVEFLCDESGNFYFIEVNARL 330 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELA---LERHAADNAL 360 + + +G+ R+ E + +N Sbjct: 331 QVEHTV----TEEITGIDLVQSQIRVAEGMTLPELGYNQENIK 369 >ref|NP_069058.1| (NC_000917) biotin carboxylase (acc) [Archaeoglobus fulgidus] sp|O30019|PYCA_ARCFU PYRUVATE CARBOXYLASE SUBUNIT A (PYRUVIC CARBOXYLASE A) pir||D69277 biotin carboxylase (acc) homolog - Archaeoglobus fulgidus gb|AAB91012.1| (AE001090) biotin carboxylase (acc) [Archaeoglobus fulgidus] Length = 506 Score = 224 bits (571), Expect = 1e-57 Identities = 51/342 (14%), Positives = 106/342 (30%), Gaps = 24/342 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV-PGKHE 84 + +R ++ + + + + Y H + + P Sbjct: 1 MFSKILVANRGEIAVRVMRACRELGIKTVGVYSSADKRAFHRVYADECYYIGKADPRDSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + I P +G L E+ + F+G K + Sbjct: 61 LNIDRIIEVAKKSGAEAIHPG-YGFLAENAEFAERCEEEGIVFIGPSPEVIRIAGSKVRS 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + ++ AG+ + P E K+G P+ VK + G +G+ V S+E+ Sbjct: 120 RESMQRAGVPVIPGSP---KIDTVDEAKEWAEKIGYPVAVKASGGGGGIGIVVVNSQEEL 176 Query: 205 AIAVD------LAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A ++ D V +E+ + R IE +L + + GE Sbjct: 177 EEAFRKSKKLGESYFKDSTVYLEKYLARPRHIEVQILADQHGNVIHLGER--ECSIQRRH 234 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E A+ E+ +++ +AV+ + +G + EIN Sbjct: 235 QKLIEE-----APSPALNEEMREELGKLAVKGAREIGYTNAGTFEFLY-ENGNFYFLEIN 288 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 + + +G+ R+ RH ++ Sbjct: 289 SRLQVEHT----ITEVVTGIDIVKYQIRIAYGEELRHGQEDV 326 >ref|NP_464597.1| (NC_003210) highly similar to pyruvate carboxylase [Listeria monocytogenes EGD-e] emb|CAC99150.1| (AL591977) highly similar to pyruvate carboxylase [Listeria monocytogenes] Length = 1146 Score = 224 bits (570), Expect = 1e-57 Identities = 54/344 (15%), Positives = 103/344 (29%), Gaps = 24/344 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATS--LAQVPGKHE 84 I + +R ++ + + + + + Y H A + P Sbjct: 4 IKKVLVANRGEIAIRVMRACTELKIKTVAIYSQEDTGSFHRYKSDEAYLVGAGKKPIDAY 63 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + D I P +G L E+ + FVG DK Sbjct: 64 LDIENIIEIAKESGADAIHPG-YGFLSENIEFARRCEQEGIIFVGPKSKHLDMFGDKIKA 122 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K A + + P A E K G PL +K + G G+ V S+E Sbjct: 123 KEQALLADIPVIPGSNGPVAG--IKEVEEFGEKNGYPLMIKASLGGGGRGMRVVESKEHV 180 Query: 205 AIAVDL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + + A + +V VE+ + + IE +LG+ + E Sbjct: 181 KESFERASSEAKAAFGNDEVYVEKCVMNPKHIEVQILGDTHGNIVHLFERD--CSIQRRH 238 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ V AI E+ ++I AV+ + + V+ + ++ E+N Sbjct: 239 QKVVE-----VAPCNAITSELRNRICDAAVKLMKNVDYINAGTVEFLVEGDD-FYFIEVN 292 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALK 361 + +G+ + + K Sbjct: 293 PRVQVEHT----ITEMITGIDIVQSQLFIADGYALHDQLVAIPK 332 >ref|NP_217017.1| (NC_000962) accA1 [Mycobacterium tuberculosis H37Rv] ref|NP_337066.1| (NC_002755) acetyl/propionyl-CoA carboxylase, alpha subunit [Mycobacterium tuberculosis CDC1551] sp|P46401|BCCA_MYCTU ACETYL-/PROPIONYL-COENZYME A CARBOXYLASE ALPHA CHAIN [INCLUDES: BIOTIN CARBOXYLASE ; BIOTIN CARBOXYL CARRIER PROTEIN (BCCP)] pir||B55579 biotin carboxyl carrier protein - Mycobacterium tuberculosis emb|CAA79609.1| (Z19549) biotin carboxyl carrier protein [Mycobacterium tuberculosis] emb|CAB08919.1| (Z95556) accA1 [Mycobacterium tuberculosis H37Rv] gb|AAK46880.1| (AE007094) acetyl/propionyl-CoA carboxylase, alpha subunit [Mycobacterium tuberculosis CDC1551] Length = 654 Score = 223 bits (569), Expect = 2e-57 Identities = 58/345 (16%), Positives = 116/345 (32%), Gaps = 24/345 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 + +R ++ + I + + + Y D H+ +A L P + Sbjct: 1 MFDTVLVANRGEIAVRVIRTLRRLGIRSVAVYSDPDVDARHVLEADAAVRLGPAPARESY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + I P +G L E+ A + F+G A DK Sbjct: 61 LDIGKVLDAAARTGAQAIHPG-YGFLAENADFAAACERARVVFLGPPARAIEVMGDKIAA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K + + + P + RA + + +++G P+ +KP+ G G+ V + Sbjct: 120 KNAVAAFDVPVVPG--VARAGLTDDALVTAAAEVGYPVLIKPSAGGGGKGMRLVQDPARL 177 Query: 205 AIAVDLAF------EFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A+ A D + +E+ + + R IE VL + + GE Sbjct: 178 PEALVSARREAMSSFGDDTLFLERFVLRPRHIEVQVLADAHGNVVHLGER--ECSLQRRH 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE--NEVVINE 315 K I+E + P+ ++I A + + G V+ ++ + +E E Sbjct: 236 QKVIEE-----APSPLLDPQTRERIGVAACNTARCVDYVGAGTVEFIVSAQRPDEFFFME 290 Query: 316 INTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 +NT + P +GL + R+ A ++ Sbjct: 291 MNTRLQVEH----PVTEAITGLDLVEWQLRVGAGEKLGFAQNDIE 331 >ref|NP_439133.1| (NC_000907) acetyl-CoA carboxylase, biotin carboxylase (accC) [Haemophilus influenzae Rd] sp|P43873|ACCC_HAEIN BIOTIN CARBOXYLASE (A SUBUNIT OF ACETYL-COA CARBOXYLASE (ACC) pir||F64105 biotin carboxylase (EC 6.3.4.14) - Haemophilus influenzae (strain Rd KW20) gb|AAC22632.1| (U32778) acetyl-CoA carboxylase, biotin carboxylase (accC) [Haemophilus influenzae Rd] Length = 448 Score = 223 bits (569), Expect = 2e-57 Identities = 55/343 (16%), Positives = 107/343 (31%), Gaps = 22/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 + + +R ++ L + + + + + D H+ L + P K Sbjct: 1 MLEKVVIANRGEIALRILRACKELGIKTVAVHSTADRDLKHVLLADETICIGPAPSAKSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + D I P +G L E+ + + F+G DK Sbjct: 61 LNIPAIIAAAEVTGADAIHPG-YGFLSENADFAEQVERSGFTFIGPTADVIRLMGDKVSA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + ++ AG+ P +N E+ ++G P+ +K + G G+ V SE+ Sbjct: 120 IKAMKKAGVPCVPGSDGPVSND-IAKNKEIAKRIGYPIIIKASGGGGGRGMRVVRSEDAL 178 Query: 205 AI------AVDLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A + V +E+ + R +E VL + + A E Sbjct: 179 EESIAMTKAEAKAAFNNDMVYMEKYLENPRHVEIQVLADTHGNAVYLAERD--CSMQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E I E+ I + A +G G + E E+N Sbjct: 237 QKVVEE-----APAPGITEEVRRDIGSRCANACVEIGYRGAGTFEFLY-ENGEFYFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P +G+ R+ ++ Sbjct: 291 TRIQVEH----PVTEMITGVDLVKEQLRIAAGLPISFKQEDIK 329 >gb|AAA67356.1| (U12536) 3-methylcrotonyl-CoA carboxylase precursor [Arabidopsis thaliana] Length = 715 Score = 223 bits (568), Expect = 2e-57 Identities = 52/344 (15%), Positives = 101/344 (29%), Gaps = 44/344 (12%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ--VPGKHE 84 I + +R ++ + + + + Y D H+ A + Sbjct: 38 IEKILVANRGEIACRIMRTAKRLGIQTVAVYSDADRDSLHVKSADEADRIGPPSAKRLSY 97 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + I P +G L E + + L F+G A DK + Sbjct: 98 LSGVTIMEAAARTGAQAIHPG-YGFLSESSDFAQLCEDSGLTFIGPPASAIRDMGDKSAS 156 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 KR++ AG+ + P + K+G P+ +KP + G G+ V S + + Sbjct: 157 KRIMGAAGVPLVPGYHGH--EQDIDHMKSEAEKIGYPIIIKPTHGGGGKGMRIVQSGKDF 214 Query: 205 AIAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A + A + +++E+ I + R IE + G+ + E Sbjct: 215 ADSFLGAQREAAASFGVNTILLEKYITRPRHIEVQIFGDKHGNVLHLYERD--CSVQRRH 272 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEI 316 K I+E A +G V+ + ++ E+ Sbjct: 273 QKIIEEAPA-------------------------AVGYYNAGTVEFIVDTESDQFYFMEM 307 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 NT + P G + R+ + Sbjct: 308 NTRLQVEH----PVTEMIVGQDLVEWQIRVANGEPLPLSQSEVP 347 >ref|NP_501777.1| (NM_069376) carbomoyl-phosphate carboxylase [Caenorhabditis elegans] pir||T21641 hypothetical protein F32B6.2 - Caenorhabditis elegans emb|CAB03038.1| (Z81074) Similarity to Soybean 3-methylcrotonyl-CoA carboxylase (TR:Q42777), contains similarity to Pfam domain: PF00289 (Carbamoyl-phosphate synthase (CPSase)), Score=534.3, E-value=2.8e-157, N=2; PF00364 (Biotin-requiring enzymes), Score=54.1, E-valu> Length = 688 Score = 223 bits (568), Expect = 2e-57 Identities = 51/357 (14%), Positives = 116/357 (32%), Gaps = 31/357 (8%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA-QVPGKH 83 + I + +R ++ + + + + + + + + A + + + Sbjct: 17 RPIQRVLVANRGEIAIRVQNTARKMGIETVAVFSDADRNSLFVKKADKAYHIGPPLAAES 76 Query: 84 EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + N I P +G L E+ A L F+G A K+V Sbjct: 77 YLNMDKIINSALRSGAQAIHPG-YGFLSENAGFAEKCAQAGLVFIGPPAQAIRDMGAKNV 135 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 +K+++ DA + + ++ + + + +++G P+ +K G G+ +E + Sbjct: 136 SKQIMEDAKVPVVKG--FHGEDQSDANLKKKSAEIGYPVMLKAVYGGGGKGMRIAWNEAE 193 Query: 204 YAIAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 + + A + +++VE+ ++ R +E V G+ + E Sbjct: 194 FEEKLASARNEAKKSFGNDEMLVEKFVEKPRHVEVQVFGDHHGNYVHLWERD--CSVQRR 251 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEI 316 K I+E + + K+ AV+A +G G V+ + P E E+ Sbjct: 252 HQKIIEE-----APAPNMEHDTRVKLGESAVRAAAAVGYVGAGTVEFIMDPRGEFYFMEM 306 Query: 317 NTLPGFTNISMYPKL-------------WQASGLGYTDLITRLIELALERHAADNAL 360 NT + SG + R+ + Sbjct: 307 NTRLQVEHPVSEAITGIDFIMGDWKLSNNLISGTDLVEWQLRVAQGEKLPLKQSEIP 363 >ref|NP_539184.1| (NC_003317) PYRUVATE CARBOXYLASE [Brucella melitensis] gb|AAL51448.1| (AE009469) PYRUVATE CARBOXYLASE [Brucella melitensis] Length = 1158 Score = 223 bits (568), Expect = 2e-57 Identities = 42/339 (12%), Positives = 102/339 (29%), Gaps = 30/339 (8%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG----- 81 I + +R ++ + + + + + H + + + P Sbjct: 8 ISKILVANRSEIAIRVFRAANELGLKTVTIWAEEDKLSLHRFKADESYQVGRGPHLDRDL 67 Query: 82 ---KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAAC 138 + + + L D I P +G L E + F+G Sbjct: 68 GPIESYLSIDEIIRVAKLSGADAIHPG-YGLLSESPEFAEACAENGIVFIGPKPETMRRL 126 Query: 139 MDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKV 198 +K + L + G+ + P ++ +++G PL +K + G G+ + Sbjct: 127 GNKVAARNLAIEIGVPVVPATDPLP--DDMDEVKKLAAQIGYPLMLKASWGGGGRGMRAI 184 Query: 199 TSEEQYAIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTS 251 +E A V A +V +E+ ++ R +E +LG+ A E Sbjct: 185 RAEADLAREVMEAKREAKAAFGKDEVYLEKLVERARHVEVQILGDTYGNAVHLFERD--C 242 Query: 252 DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE-NE 310 + K ++ + ++ ++ G V+ + + + Sbjct: 243 SIQRRNQKVVE-----RAPAPYLNDAQRRELADYGLKIAHATDYIGAGTVEFLMDADTGK 297 Query: 311 VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 E+N + + +G+ ++E Sbjct: 298 FYFIEVNPRIQVEHTV----TEEVTGIDIVKAQIHILEG 332 >ref|NP_349267.1| (NC_003030) Pyruvate carboxylase, PYKA [Clostridium acetobutylicum] gb|AAK80607.1|AE007763_6 (AE007763) Pyruvate carboxylase, PYKA [Clostridium acetobutylicum] Length = 1144 Score = 222 bits (567), Expect = 3e-57 Identities = 53/336 (15%), Positives = 102/336 (29%), Gaps = 23/336 (6%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA--QVPGK 82 K + +R ++ + + + + Y + + + P Sbjct: 3 KKFKRVLVANRGEIAIRIFRACHELGIRTVAIYSEEDKLALFRTKADESYLIGQNKGPVD 62 Query: 83 HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKD 142 + + N VD I P +G L E+ A + F+G DK Sbjct: 63 AYLNIDEIINLALKKGVDAIHPG-YGFLSENSEFSRRCTEAGIEFIGPTGDMMDKLGDKI 121 Query: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEE 202 +K + AG+ P + + E G P+ VK A G G+ V EE Sbjct: 122 NSKLAAKAAGVKTIPG--VEKPIETEQQAIEFARTCGYPVMVKAAAGGGGRGMRIVEKEE 179 Query: 203 QYAIAVDLA------FEFDHKVIVEQGIKG-REIECAVLGNDNPQASTCGEIVLTSDFYA 255 A A + +E+ ++G + IE VLG+ E Sbjct: 180 DLIAACRSAKSEAKKAFGIEDIFIEKYLEGPKHIEVQVLGDKYGNIVHLYERD--CSVQR 237 Query: 256 YDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINE 315 K I+ + +++ E +I A++ +++G ++ L E Sbjct: 238 RHQKVIE-----LTPAVSMSEEKRLEICEDALKIARSIGYRSAGTLEFLLDKHGNHYFIE 292 Query: 316 INTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 +N + +G+ + E Sbjct: 293 MNPRVQVEHT----ITEMVTGIDIVQSQILIAEGYK 324 >gb|AAD34740.1| (AF132152) unknown [Drosophila melanogaster] gb|AAF58885.1| (AE003831) BcDNA:GH06348 gene product [alt 2] [Drosophila melanogaster] gb|AAF58886.1| (AE003831) BcDNA:GH06348 gene product [alt 3] [Drosophila melanogaster] gb|AAF58887.1| (AE003831) BcDNA:GH06348 gene product [alt 4] [Drosophila melanogaster] Length = 1181 Score = 222 bits (567), Expect = 3e-57 Identities = 54/330 (16%), Positives = 100/330 (29%), Gaps = 23/330 (6%) Query: 30 AIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV--PGKHEHQL 87 + +R ++ + + + + Y H + + + P + + Sbjct: 42 VLVANRGEIAIRVFRACTELGIKSVAVYSEQDKMHMHRQKADESYIVGKGLPPVEAYLNI 101 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + VD + P +G L E + A L F+G DK + Sbjct: 102 PELIRVCKENDVDAVHPG-YGFLSERSDFAQAVIDAGLRFIGPSPEVVQKMGDKVAARVA 160 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 +AG+ I P E K GLP+ K A G G+ V E + Sbjct: 161 AIEAGVPIVPGTDGPVT--TKEEALEFCKKHGLPVIFKAAYGGGGRGMRVVRKMEDVEES 218 Query: 208 VDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A + + +E+ I+ R IE +LG+ E K Sbjct: 219 FQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERD--CSVQRRHQKV 276 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++ + + EI DK+ AV+ + +G V+ E+N Sbjct: 277 VE-----IAPAPRLPIEIRDKMTEAAVRLARHVGYENAGTVEFLCDESGNFYFIEVNARL 331 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELA 350 + + +G+ R+ E Sbjct: 332 QVEHTV----TEEITGIDLVQSQIRVAEGM 357 >gb|AAL27442.1|AF430807_7 (AF430807) VanE [Enterococcus faecalis] Length = 352 Score = 222 bits (566), Expect = 4e-57 Identities = 110/354 (31%), Positives = 198/354 (55%), Gaps = 8/354 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 V I+FGG S+E+EVSL+SA I+ ++ ++V+ +GI ++G W++ + + + D Sbjct: 2 KTVAIIFGGVSSEYEVSLKSAVAIIKNMESIDYNVMKIGITEEGHWYLFEGTTDKIKKDR 61 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 L S + K +N + + D++FP++HG GE+G++QG+ + Sbjct: 62 WF---LDESCEEIVVDFAKKSF---VLKNSKKIIKPDILFPVLHGGYGENGAMQGVFELL 115 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 ++P+VG + A+A M+K + + G+ P + + + G PL+ Sbjct: 116 DIPYVGCGIGAAAISMNKIMLHQFAEAIGVKSTPSMIIEKGQDL-QKVDAFAKIHGFPLY 174 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 +KP GSS G+SKV + A+D A ++D ++++++ +KG EI C +LGN+ Sbjct: 175 IKPNEAGSSKGISKVERKSDLYKAIDEASKYDSRILIQKEVKGVEIGCGILGNEQLVVGE 234 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 C +I L F+ Y+ KY + A++++PA ++ + + I+ A + Y+ LGC G+AR+D Sbjct: 235 CDQISLVDGFFDYEEKY-NLVTAEILLPAKLSIDKKEDIQMKAKKLYRLLGCKGLARIDF 293 Query: 304 FLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 FLT + E+++NEINT+PGFT S +P + G+ Y ++I L+ LA+E H Sbjct: 294 FLTDDGEILLNEINTMPGFTEHSRFPMMMNEIGMDYKEIIENLLVLAVENHEKK 347 >gb|AAC41643.1| (M64926) urea amidolyase [Saccharomyces cerevisiae] Length = 1835 Score = 222 bits (566), Expect = 4e-57 Identities = 56/340 (16%), Positives = 107/340 (31%), Gaps = 24/340 (7%) Query: 30 AIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKH-EHQLI 88 + +R ++ + I + + + Y H+ + L + Sbjct: 636 VLIANRGEIAVRIIKTLKKLGIRSVAVYSDPDKYSQHVTDADVSVPLHGTTAAQTYLDMN 695 Query: 89 DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLL 148 + I P +G L E+ A + FVG K +++ Sbjct: 696 KIIDAAKQTNAQAIIPG-YGFLSENADFSDACTSAGITFVGPSGDIIRGLGLKHSARQIA 754 Query: 149 RDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV 208 + AG+ + P L +V ++L P+ VK G +G+ KV SEE Sbjct: 755 QKAGVPLVPGSLLIT---SVEEAKKVAAELEYPVMVKSTAGGGGIGLQKVDSEEDIEHIF 811 Query: 209 D------LAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYI 261 + F D V +++ I R +E ++G+ +A GE + K I Sbjct: 812 ETVKHQGETFFGDAGVFLKRFIENARHVEVQLMGDGFGKAIALGERD--CSLQRRNQKVI 869 Query: 262 DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEINTLP 320 +E + + +R A L V+ ++E E+NT Sbjct: 870 EE-----TPAPNLPEKTRLALRKAAESLGSLLNYKCAGTVEFIYDEKKDEFYFLEVNTRL 924 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + P +GL + + R+ + Sbjct: 925 QVEH----PITEMVTGLDLVEWMIRIAANDAPDFDSTKVE 960 >ref|NP_390314.1| (NC_000964) acetyl-CoA carboxylase subunit (biotin carboxylase subunit) [Bacillus subtilis] pir||A69581 acetyl-CoA carboxylase (biotin carboxylase subunit) accC - Bacillus subtilis dbj|BAA12569.1| (D84432) YqhX [Bacillus subtilis] emb|CAB14365.1| (Z99116) acetyl-CoA carboxylase subunit (biotin carboxylase subunit) [Bacillus subtilis] Length = 450 Score = 222 bits (566), Expect = 4e-57 Identities = 61/344 (17%), Positives = 117/344 (33%), Gaps = 23/344 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKH-E 84 I + +R ++ + I + + + Y D H+ + A + K Sbjct: 1 MIKKLLIANRGEIAVRIIRACRELGIETVAVYSEADKDALHVQMADEAFCIGPKASKDSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + L D I P +G L E+ + N+ FVG A + KDV Sbjct: 61 LNVTNIVSVAKLTGTDAIHPG-YGFLAENADFAELCEEVNVTFVGPSPDAISKMGTKDVA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + ++ AG+ I P N + +++G P+ +K G G+ +EE+ Sbjct: 120 RETMKQAGVPIVPGSQGIIEN--VEEAVSLANEIGYPVIIKATAGGGGKGIRVARTEEEL 177 Query: 205 AIAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + + V +E+ I R +E VL ++ GE Sbjct: 178 INGIKITQQEAATAFRNPGVYIEKYIEDFRHVEIQVLADNYGNTIHLGERD--CSIQRRL 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEI 316 K ++E A+ EI +++ AV+A + +G G V+ E E+ Sbjct: 236 QKLLEE-----SPSPALDSEIREQMGDAAVKAAKAVGYTGAGTVEFIYDYNEQRYYFMEM 290 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 NT + P +G ++ ++ Sbjct: 291 NTRIQVEH----PVTEMVTGTDLIKEQIKVASGMELSLKQEDVE 330 >gb|AAC44388.1| (U51439) pyruvate carboxylase [Rhizobium etli] Length = 1154 Score = 222 bits (566), Expect = 4e-57 Identities = 44/340 (12%), Positives = 106/340 (30%), Gaps = 30/340 (8%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG----- 81 I + +R ++ + + + + + H + + + P Sbjct: 3 ISKILVANRSEIAIRVFRAANELGIKTVAIWAEEDKLALHRFKADESYQVGRGPHLARDL 62 Query: 82 ---KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAAC 138 + + + L D I P +G L E A + F+G Sbjct: 63 GPIESYLSIDEVIRVAKLSGADAIHPG-YGLLSESPEFVDACNKAGIIFIGPKADTMRQL 121 Query: 139 MDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKV 198 +K + L G+ + P + A++ + +G P+ +K + G G+ + Sbjct: 122 GNKVAARNLAISVGVPVVPATEPLPDDMAE--VAKMAAAIGYPVMLKASWGGGGRGMRVI 179 Query: 199 TSEEQYAIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTS 251 SE A V A +V +E+ ++ R +E +LG+ + E Sbjct: 180 RSEADLAKEVTEAKREAMAAFGKDEVYLEKLVERARHVESQILGDTHGNVVHLFERD--C 237 Query: 252 DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE-NE 310 + K ++ ++ ++ A +++ G V+ + + + Sbjct: 238 SVQRRNQKVVE-----RAPAPYLSEAQRQELAAYSLKIAGATNYIGAGTVEYLMDADTGK 292 Query: 311 VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 E+N + +G+ +++ A Sbjct: 293 FYFIEVNPRIQVEHTV----TEVVTGIDIVKAQIHILDGA 328 >gb|AAG22289.1| (AE003831) BcDNA:GH06348 gene product [alt 1] [Drosophila melanogaster] Length = 1196 Score = 222 bits (565), Expect = 4e-57 Identities = 54/330 (16%), Positives = 100/330 (29%), Gaps = 23/330 (6%) Query: 30 AIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV--PGKHEHQL 87 + +R ++ + + + + Y H + + + P + + Sbjct: 42 VLVANRGEIAIRVFRACTELGIKSVAVYSEQDKMHMHRQKADESYIVGKGLPPVEAYLNI 101 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + VD + P +G L E + A L F+G DK + Sbjct: 102 PELIRVCKENDVDAVHPG-YGFLSERSDFAQAVIDAGLRFIGPSPEVVQKMGDKVAARVA 160 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 +AG+ I P E K GLP+ K A G G+ V E + Sbjct: 161 AIEAGVPIVPGTDGPVT--TKEEALEFCKKHGLPVIFKAAYGGGGRGMRVVRKMEDVEES 218 Query: 208 VDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A + + +E+ I+ R IE +LG+ E K Sbjct: 219 FQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERD--CSVQRRHQKV 276 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++ + + EI DK+ AV+ + +G V+ E+N Sbjct: 277 VE-----IAPAPRLPIEIRDKMTEAAVRLARHVGYENAGTVEFLCDESGNFYFIEVNARL 331 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELA 350 + + +G+ R+ E Sbjct: 332 QVEHTV----TEEITGIDLVQSQIRVAEGM 357 >ref|NP_229950.1| (NC_002505) acetyl-CoA carboxylase, biotin carboxylase [Vibrio cholerae] pir||F82341 acetyl-CoA carboxylase, biotin carboxylase VC0295 [imported] - Vibrio cholerae (group O1 strain N16961) gb|AAF93469.1| (AE004117) acetyl-CoA carboxylase, biotin carboxylase [Vibrio cholerae] Length = 447 Score = 222 bits (565), Expect = 5e-57 Identities = 49/343 (14%), Positives = 101/343 (29%), Gaps = 22/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKH-E 84 + + +R ++ L + + + + + D H+ L + + Sbjct: 1 MLDKVVIANRGEIALRILRACKELGIKTVAVHSTADRDLKHVLLADESICIGPAKSIDSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + I P +G L E+ + + FVG DK Sbjct: 61 LNIPRIISAAEVTGAVAIHPG-YGFLSENADFAEQVERSGFIFVGPRAETIRLMGDKVSA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 ++ AG+ P + ++G P+ +K + G G+ V +E + Sbjct: 120 INAMKKAGVPCVPGSDGP-LDNDEAKNKAHAKRIGYPVIIKASGGGGGRGMRVVRNEAEL 178 Query: 205 AI------AVDLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A + V +E+ + R +E V+ + A E Sbjct: 179 TKSIQMTRAEAKAAFNNDMVYMEKFLENPRHVEVQVIADGQGNAIHLAERD--CSMQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E I E+ I +A +G G + E E+N Sbjct: 237 QKVVEE-----APAPGITEEMRKFIGERCTRACIEIGYRGAGTFEFLY-ENGEFYFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P +G+ R+ ++ Sbjct: 291 TRIQVEH----PVTEMITGVDLIKEQLRIAAGQPLSFKQEDIK 329 >ref|NP_296522.1| (NC_002620) UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase [Chlamydia muridarum] pir||B81737 UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase TC0143 [imported] - Chlamydia muridarum (strain Nigg) gb|AAF39021.1| (AE002281) UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase [Chlamydia muridarum] Length = 833 Score = 222 bits (565), Expect = 5e-57 Identities = 101/370 (27%), Positives = 172/370 (46%), Gaps = 30/370 (8%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +KL +G++ GG+S EH++S+ SA+NI + S ++V I ++G W + Sbjct: 476 KKLSLGLICGGRSCEHDISILSAQNIAKYLSHSFYEVQYFLITREGLWKTGSSLELSEE- 534 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 + D + L VDVI PI+HG GEDG++QG L Sbjct: 535 ---------------------TGKTIFDPEIAGKLSKVDVILPILHGPYGEDGAMQGFLE 573 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT---RANRHNISFAEVESKL 178 P+ G ++ +A M+K +TKR + D G+ + P++ LT A++++ Sbjct: 574 TIGKPYTGPSLVFAAIGMNKVLTKRFMSDLGIPVVPYLPLTLKGWKQDQEKCLAQIKAAF 633 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQ-GIKGREIECAVLGND 237 P+FVK + GSS+GV +V + A++ AF D V +E+ + REIE + LG+ Sbjct: 634 SFPMFVKSVHLGSSIGVFEVHDTNELRDAINEAFVRDDDVFIEESRLGCREIEVSFLGDG 693 Query: 238 NPQASTCG--EIVLTSDFYAYDTKY--IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 + G E F Y KY A++V ++ E +++ +A + Y+ L Sbjct: 694 SGVFFVAGMHERRGRGGFIDYQEKYGLSGRASAQIVFDVDLSKETREQLLGVAEKIYRLL 753 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G R+D F+ E ++EIN +PG T S + + G ++ +L+ L+R Sbjct: 754 QGKGSCRIDFFVDNEGSFWLSEINPIPGMTTASPFLAAFVRKGWNREQIVHQLVIDGLQR 813 Query: 354 HAADNALKTT 363 L +T Sbjct: 814 FDQRQRLIST 823 >ref|NP_009777.1| (NC_001134) converts pyruvate to oxaloacetate; Pyc2p [Saccharomyces cerevisiae] sp|P32327|PYC2_YEAST PYRUVATE CARBOXYLASE 2 (PYRUVIC CARBOXYLASE 2) (PCB 2) pir||S46094 pyruvate carboxylase (EC 6.4.1.1) 2 - yeast (Saccharomyces cerevisiae) emb|CAA85182.1| (Z36087) ORF YBR218c [Saccharomyces cerevisiae] gb|AAC49147.1| (U35647) pyruvate carboxylase 2 [Saccharomyces cerevisiae] Length = 1180 Score = 222 bits (565), Expect = 5e-57 Identities = 49/333 (14%), Positives = 100/333 (29%), Gaps = 25/333 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV----PGKHE 84 + +R ++ + + + + Y H A + + P Sbjct: 22 KILVANRGEIPIRIFRSAHELSMRTIAIYSHEDRLSMHRLKADEAYVIGEEGQYTPVGAY 81 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + VD I P +G L E+ + A + ++G + DK Sbjct: 82 LAMDEIIEIAKKHKVDFIHPG-YGFLSENSEFADKVVKAGITWIGPPAEVIDSVGDKVSA 140 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + L A + P + ++ G P+ +K A G G+ V + Sbjct: 141 RHLAARANVPTVPGTPGPI--ETVQEALDFVNEYGYPVIIKAAFGGGGRGMRVVREGDDV 198 Query: 205 AIAVDLA------FEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A A + VE+ + + IE +L +++ E Sbjct: 199 ADAFQRATSEARTAFGNGTCFVERFLDKPKHIEVQLLADNHGNVVHLFERD--CSVQRRH 256 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ V + E+ D I AV+ + G + + +N EIN Sbjct: 257 QKVVE-----VAPAKTLPREVRDAILTDAVKLAKVCGYRNAGTAEFLVDNQNRHYFIEIN 311 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + + +G+ ++ A Sbjct: 312 PRIQVEHT----ITEEITGIDIVSAQIQIAAGA 340 >ref|NP_407114.1| (NC_003143) biotin carboxylase [Yersinia pestis] emb|CAC93128.1| (AJ414158) biotin carboxylase [Yersinia pestis] Length = 449 Score = 222 bits (565), Expect = 6e-57 Identities = 48/343 (13%), Positives = 101/343 (28%), Gaps = 22/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HE 84 + + +R ++ L + + + + + + D H+ L + P Sbjct: 1 MLDKIVIANRGEIALRILRACKELGIKTVAVHSVADRDLKHVLLADETVCIGPAPSVKSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + + P +G L E+ + + F+G DK Sbjct: 61 LNIPAIISAAEITGAVAVHPG-YGFLSENADFAEQVERSGFIFIGPRAETIRLMGDKVSA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 ++ AG+ P ++ + ++G P+ +K + G G+ V ++ Sbjct: 120 ISAMKKAGVPCVPGSDGPLSDDTTKN-KAFAKRIGYPVIIKASGGGGGRGMRVVRHDKDL 178 Query: 205 AI------AVDLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A + V +E+ + R IE +L + A E Sbjct: 179 EESINMTRAEAKAAFNNDMVYMEKYLENPRHIEVQILADGQGNAIYLAERD--CSMQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E I E+ I +A +G G + E E+N Sbjct: 237 QKVVEE-----APAPGITSEMRRYIGERCAKACMEIGYRGAGTFEFLY-ENGEFYFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + +G+ R+ D Sbjct: 291 TRIQVEHTV----TEMITGIDLIKEQLRIAAGQPLSIKQDEVK 329 >ref|NP_246028.1| (NC_002663) AccC [Pasteurella multocida] gb|AAK03175.1| (AE006150) AccC [Pasteurella multocida] Length = 448 Score = 222 bits (565), Expect = 6e-57 Identities = 52/343 (15%), Positives = 105/343 (30%), Gaps = 22/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 + + +R ++ L + + + + + + H+ L + P K Sbjct: 1 MLEKVVIANRGEIALRILRACKELGIKTVAVHSTADRELKHVLLADETVCIGPAPSTKSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + D I P +G L E+ + + F+G DK Sbjct: 61 LNIPAIIAAAEVTGADAIHPG-YGFLSENADFAEQVERSGFIFIGPTADVIRLMGDKVSA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 ++ +G+ P + + E+ ++G P+ +K + G G+ V E Sbjct: 120 IEAMKKSGVPCVPGSDGPVGSDMVKN-KEIAKRIGYPVIIKASGGGGGRGMRVVRDEASL 178 Query: 205 AI------AVDLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A + V +E+ + R IE VL + + A E Sbjct: 179 EESIAMTKAEAKAAFNNDMVYMEKYLENPRHIEIQVLADTHGNAIYLAERD--CSMQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E I+ E+ I +A +G G + E E+N Sbjct: 237 QKVVEE-----APAPGISDEVRRDIGERCAKACVEIGYRGAGTFEFLY-ENGEFYFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P +G+ R+ ++ Sbjct: 291 TRIQVEH----PVTEMITGVDLVKEQLRIAAGLPISIKQEDVK 329 >ref|NP_540842.1| (NC_003317) acetyl-CoA carboxylase alpha chain / propionyl-CoA carboxylase alpha chain [Brucella melitensis] gb|AAL53106.1| (AE009626) acetyl-CoA carboxylase alpha chain / propionyl-CoA carboxylase alpha chain [Brucella melitensis] Length = 678 Score = 221 bits (564), Expect = 6e-57 Identities = 63/347 (18%), Positives = 114/347 (32%), Gaps = 27/347 (7%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-H 83 + +R ++ I + ++ + Y H+ + A + Sbjct: 23 VMFQKILIANRGEIACRVIRTARKLGIATVAIYSDADARALHVEMADEAVRVGPAASAQS 82 Query: 84 EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + + I P +G L E+ + + A L F+G A A KD Sbjct: 83 YLNVDAIIKAAKETGAEAIHPG-YGFLSENPAFVDAVEEAGLIFIGPSAKAIRAMGLKDA 141 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 K L+ AG+ + P + ++ P+ +K G G+ +V S Sbjct: 142 AKALMEKAGVPVVPGYHGDNQDGA--FLKSEADRITYPVLIKARAGGGGKGMRRVDSAAD 199 Query: 204 YAIAVD------LAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 +A A++ A D V+VE+ + K R IE V G+++ A E Sbjct: 200 FAAALESARREAEASFGDGAVLVEKYMAKPRHIEVQVFGDNHGNAVHLFERD--CSLQRR 257 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE-----NEV 311 K I+E + E+ + AV+A T+G +G V+ + Sbjct: 258 HQKVIEE-----APAPGMTEEMRAAMGEAAVKAALTIGYSGAGTVEFIADVSEGLRPDRF 312 Query: 312 VINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 E+NT + P +GL + R+ D Sbjct: 313 FFMEMNTRLQVEH----PVTEAITGLDLVEWQLRVASGEALPKRQDE 355 >ref|NP_533976.1| (NC_003305) 3-methylcrotonyl-CoA carboxylase alpha subunit [Agrobacterium tumefaciens str. C58 (U. Washington)] gb|AAL44292.1| (AE009278) 3-methylcrotonyl-CoA carboxylase alpha subunit [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 663 Score = 221 bits (563), Expect = 9e-57 Identities = 58/332 (17%), Positives = 110/332 (32%), Gaps = 23/332 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HE 84 + +R ++ I + + Y D H+AL A ++ P + Sbjct: 1 MFSKILIANRGEIACRIIRTAASMGIRTVAVYSDADRDAMHVALADEAIAIGPAPARASY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + I P +G L E+ A L F+G A A K Sbjct: 61 LDGEKIIAAAKASGAEAIHPG-YGFLSENAGFAEACASAGLVFIGPPPEAIRAMGGKSEA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K L+ AG+ I P + A K+G P+ +K + G G+ V + + Sbjct: 120 KALMATAGVPIVPGYHGD--EQAEKRLASEADKIGYPVLLKASAGGGGKGMRVVRQKHDF 177 Query: 205 AIAV------DLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A + LA + ++++E+ ++ R +E V + + + E Sbjct: 178 AAELAGAKREALAAFGNDRMLIEKYLERPRHVEVQVFADGHGNCVSLFERD--CSIQRRH 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E + ++ ++ A A + + G ++ L P E+N Sbjct: 236 QKVIEE-----APAPGLPDDLRQRMYDAATAAARAIDYRGAGTIEFLLDPSG-FYFMEMN 289 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 T + P +GL + R+ Sbjct: 290 TRLQVEH----PVTEYITGLDLVEWQLRVANG 317 >sp|Q9PLG1|MUDD_CHLMU MURC/DDL BIFUNCTIONAL ENZYME [INCLUDES: UDP-N-ACETYLMURAMATE--ALANINE LIGASE (UDP-N-ACETYLMURAMOYL-L-ALANINE SYNTHETASE); D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE)] Length = 802 Score = 221 bits (562), Expect = 1e-56 Identities = 101/370 (27%), Positives = 172/370 (46%), Gaps = 30/370 (8%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +KL +G++ GG+S EH++S+ SA+NI + S ++V I ++G W + Sbjct: 445 KKLSLGLICGGRSCEHDISILSAQNIAKYLSHSFYEVQYFLITREGLWKTGSSLELSEE- 503 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 + D + L VDVI PI+HG GEDG++QG L Sbjct: 504 ---------------------TGKTIFDPEIAGKLSKVDVILPILHGPYGEDGAMQGFLE 542 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT---RANRHNISFAEVESKL 178 P+ G ++ +A M+K +TKR + D G+ + P++ LT A++++ Sbjct: 543 TIGKPYTGPSLVFAAIGMNKVLTKRFMSDLGIPVVPYLPLTLKGWKQDQEKCLAQIKAAF 602 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQ-GIKGREIECAVLGND 237 P+FVK + GSS+GV +V + A++ AF D V +E+ + REIE + LG+ Sbjct: 603 SFPMFVKSVHLGSSIGVFEVHDTNELRDAINEAFVRDDDVFIEESRLGCREIEVSFLGDG 662 Query: 238 NPQASTCG--EIVLTSDFYAYDTKY--IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 + G E F Y KY A++V ++ E +++ +A + Y+ L Sbjct: 663 SGVFFVAGMHERRGRGGFIDYQEKYGLSGRASAQIVFDVDLSKETREQLLGVAEKIYRLL 722 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G R+D F+ E ++EIN +PG T S + + G ++ +L+ L+R Sbjct: 723 QGKGSCRIDFFVDNEGSFWLSEINPIPGMTTASPFLAAFVRKGWNREQIVHQLVIDGLQR 782 Query: 354 HAADNALKTT 363 L +T Sbjct: 783 FDQRQRLIST 792 >sp|P49787|ACCC_BACSU BIOTIN CARBOXYLASE (A SUBUNIT OF ACETYL-COA CARBOXYLASE (ACC) gb|AAB00183.1| (U36245) biotin carboxylase [Bacillus subtilis] Length = 448 Score = 221 bits (562), Expect = 1e-56 Identities = 61/344 (17%), Positives = 116/344 (32%), Gaps = 23/344 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKH-E 84 I + +R ++ + I + + + Y D H+ + A + K Sbjct: 1 MIKKLLIANRGEIAVRIIRACRELGIETVAVYSEADKDALHVQMADEAFCIGPKASKDSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + L D I P +G L E+ + N+ FVG A + KDV Sbjct: 61 LNVTNIVSVAKLTGTDAIHPG-YGFLAENADFAELCEEVNVTFVGPSADAISKMGTKDVA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + ++ AG+ I P N + +++G P+ +K G G+ +EE+ Sbjct: 120 RETMKQAGVPIVPGSQGIIEN--VEEAVSLANEIGYPVIIKATAGGGGKGIRVARTEEEL 177 Query: 205 AIAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + + V +E+ I R +E VL ++ GE Sbjct: 178 INGIKITQQEAATAFGNPGVYIEKYIEDFRHVEIQVLADNYGNTIHLGERD--CSIQRRL 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEI 316 K + E A+ EI +++ AV+A + +G G V+ E E+ Sbjct: 236 QKLLGE-----SPSPALGSEIREQMGDAAVKAAKAVGYTGAGTVEFIYDYNEQRYYFMEM 290 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 NT + P +G ++ ++ Sbjct: 291 NTRIQVEH----PVTEMVTGTDLIKEQIKVASGMELSLKQEDVE 330 >emb|CAA42544.1| (X59890) pyruvate carboxylase [Saccharomyces cerevisiae] Length = 1185 Score = 220 bits (561), Expect = 1e-56 Identities = 49/333 (14%), Positives = 98/333 (28%), Gaps = 25/333 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV----PGKHE 84 + +R ++ + + + + Y H A + + P Sbjct: 22 KILVANRGEIPIRIFRSAHELSMRTIAIYSHEDRLSMHRLKADEAYVIGEEGQYTPVGAY 81 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + VD I P +G L E+ + A + ++G + DK Sbjct: 82 LAMDEIIEIAKKHKVDFIHPG-YGFLSENSEFADKVVKAGITWIGPPAEVIESVGDKVSA 140 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + L A + P + ++ G P+ +K A G G+ V + Sbjct: 141 RHLAARANVPTVPGTPGPI--ETVQEALDFVNEYGYPVIIKAAFGGGGRGMRVVREGDDV 198 Query: 205 AIAVDLA------FEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A A + VE+ + + IE +L + + E Sbjct: 199 ADAFQRATSEARTAFGNGTCFVERFLDKPKHIEVQLLADKHGNVVHLFERD--CSVQRRH 256 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ V E+ D I AV+ + G + + +N EIN Sbjct: 257 QKVVE-----VAPAKTFPREVRDAILTDAVKLAKVCGYRNAGTAEFLVDNQNRHYFIEIN 311 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + + +G+ ++ A Sbjct: 312 PRIQVEHT----ITEEITGIDIVSAQIQIAAGA 340 >ref|NP_518386.1| (NC_003295) PROBABLE ACYL-COA CARBOXYLASE ALPHA CHAIN PROTEIN [Ralstonia solanacearum] emb|CAD13793.1| (AL646058) PROBABLE ACYL-COA CARBOXYLASE ALPHA CHAIN PROTEIN [Ralstonia solanacearum] Length = 712 Score = 219 bits (558), Expect = 3e-56 Identities = 61/344 (17%), Positives = 112/344 (31%), Gaps = 23/344 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 + +R ++ + + + Y D H+A A + + + + Sbjct: 38 MFTKLLIANRGEIACRVAATCRRLGIRTVAVYSDADVDARHVAACDEAIHIGEPAARDSY 97 Query: 86 Q-LIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 I P +G L E+ + A L FVG A A K Sbjct: 98 LRADRILEAARATGAQAIHPG-YGFLSENEAFARACSEAGLVFVGPPASAIEAMGSKSAA 156 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K L+ AG+ + P + ++G P+ +K + G G+ V + E + Sbjct: 157 KALMETAGVPLVPGYHGDNQDAA--FLRAQADRIGYPVLIKASAGGGGKGMRVVETGEAF 214 Query: 205 AIAVDLAF------EFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A+ D +V++E+ + + R IE V + A E Sbjct: 215 AAALASVKREASSSFGDDRVLIEKYLTRPRHIEIQVFADGFGDAVYLFERD--CSVQRRH 272 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E + PE + AV A + +G G V+ + + E+N Sbjct: 273 QKVLEE-----APAPGMTPERRRAMGEAAVAAARAVGYVGAGTVEFIVDEDGTFYFMEMN 327 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALK 361 T + P +G + R+ A +AL+ Sbjct: 328 TRLQVEH----PVTEMITGEDLVEWQLRV-ACGEPLPRAQDALR 366 >ref|NP_420691.1| (NC_002696) acetyl-CoA carboxylase, biotin carboxylase [Caulobacter crescentus] gb|AAK23859.1| (AE005862) acetyl-CoA carboxylase, biotin carboxylase [Caulobacter crescentus] Length = 448 Score = 219 bits (558), Expect = 3e-56 Identities = 59/342 (17%), Positives = 114/342 (33%), Gaps = 23/342 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKHE 84 + +R ++ L + ++ + + + + L + + P K Sbjct: 1 MFDKILIANRGEIALRVHRACKEMGIATVAVHSEADRNSMWVRLADESVCIGPAPAAKSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + I P +G L E+ ++ F+G DK Sbjct: 61 LNIPSIIAAAEITGAQAIHPG-YGFLSENARFAEIVGAHGFTFIGPKPEHIRMMGDKITA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K+ ++DAG+ + P + E K+G P+ +K A G G+ + E Sbjct: 120 KQAVKDAGIPVVPGSDGGVS--TEEEAFEAAEKIGFPVLIKAAAGGGGRGMKVAQTREDL 177 Query: 205 AIAV------DLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A AV A D V +E+ ++ R IE V+ + + GE Sbjct: 178 AEAVSTARAEARAAFGDDTVYMERYLQKPRHIELQVIADSHGNVVHLGERD--CSLQRRH 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E A++ E KI + V A + +G G+ ++ +E E+N Sbjct: 236 QKVLEE-----APSPALSAEGRAKIGKVVVDAVKAIGYLGVGTIEFLW-ENDEFFFIEMN 289 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 T + P +G+ R+ D+ Sbjct: 290 TRLQVEH----PVTEAITGIDLVREQIRIAAGLPLSFTQDDV 327 >gb|AAA34843.1| (J03889) pyruvate carboxylase (EC 6.4.1.1) [Saccharomyces cerevisiae] Length = 1178 Score = 219 bits (557), Expect = 5e-56 Identities = 49/323 (15%), Positives = 99/323 (30%), Gaps = 25/323 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV----PGKHE 84 + +R ++ + + + + Y H A + +V P Sbjct: 21 KILVANRGEIPIRIFRTAHELSMQTVAIYSHEDRLSTHKQKADEAYVIGEVGQYTPVGAY 80 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + VD I P +G L E+ + A + ++G + DK Sbjct: 81 LAIDEIISIAQKHQVDFIHPG-YGFLSENSEFADKVVKAGITWIGPPAEVIDSVGDKVSA 139 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + L A + P + ++ G P+ +K A G G+ V + Sbjct: 140 RNLAAKANVPTVPGTPGPI--ETVEEALDFVNEYGYPVIIKAAFGGGGRGMRVVREGDDV 197 Query: 205 AIAVDLA------FEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A A + VE+ + + IE +L +++ E Sbjct: 198 ADAFQRATSEARTAFGNGTCFVERFLDKPKHIEVQLLADNHGNVVHLFERD--CSVQRRH 255 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ V + E+ D I AV+ + G + + +N EIN Sbjct: 256 QKVVE-----VAPAKTLPREVRDAILTDAVKLAKECGYRNAGTAEFLVDNQNRHYFIEIN 310 Query: 318 TLPGFTNISMYPKLWQASGLGYT 340 + + +G+ Sbjct: 311 PRIQVEHT----ITEEITGIDIV 329 >ref|NP_282187.1| (NC_002163) putative pyruvate carboxylase A subunit [Campylobacter jejuni] pir||B81306 probable pyruvate carboxylase (EC 6.4.1.1) A chain Cj1037c [imported] - Campylobacter jejuni (strain NCTC 11168) emb|CAB73293.1| (AL139077) putative pyruvate carboxylase A subunit [Campylobacter jejuni] Length = 481 Score = 219 bits (557), Expect = 5e-56 Identities = 52/342 (15%), Positives = 111/342 (32%), Gaps = 20/342 (5%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 I + +R ++ + I H+ + + + H+ + A + + Sbjct: 3 QIHKILIANRAEIAVRVIRACRDLHIKSVAVFTEPDRECLHVKIADEAYRIGTDAIRGYL 62 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + D I P +G L E+ A + F+G +K++ + Sbjct: 63 DVARIVEIAKACGADAIHPG-YGFLSENYEFAKACEDAGIIFIGPKSEVIHKMGNKNIAR 121 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 +L+ G+ I P + K+G P+ +K + G G+ V E+ Sbjct: 122 KLMAKNGIPIVPGTEKLN-SYSMEEIKIFAEKIGYPVILKASGGGGGRGIRVVHKEQDLE 180 Query: 206 IAVDLA------FEFDHKVIVEQG-IKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A + + + +V +E+ + R IE +LG++ E Sbjct: 181 NAFESCKREALTYFNNDEVFMEKYVVNPRHIEFQILGDNYGNIIHLCERD--CSIQRRHQ 238 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K I+ + I+ + + AV A + +G ++ L N E+NT Sbjct: 239 KVIE-----IAPCPGISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDDYNRFYFMEMNT 293 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + P + +G+ R+ + + Sbjct: 294 RIQVEH----PITEEITGIDLIVRQIRIAAGEILDLEQSDIK 331 >ref|NP_437243.1| (NC_003078) putative methylcrotonoyl-CoA carboxylase biotinylated subunit protein [Sinorhizobium meliloti] emb|CAC49103.1| (AL603644) putative methylcrotonoyl-CoA carboxylase biotinylated subunit protein [Sinorhizobium meliloti] Length = 662 Score = 218 bits (556), Expect = 5e-56 Identities = 64/347 (18%), Positives = 114/347 (32%), Gaps = 27/347 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKHE 84 + +R ++ I + + + Y D H+AL A + P + Sbjct: 1 MFSKLLIANRGEIACRIIRTARRLGIRTVAVYSDADGDALHVALADEAIRIGGAPAAESY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 I P +G L E+ + A + FVG A A KD Sbjct: 61 LASAPIVQAARSVGAQAIHPG-YGFLSENADFAEAVAEAGMIFVGPPPAAIRAMGLKDAA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K L+ +G+ + P + A+ ++G P+ +K G G+ +V +E + Sbjct: 120 KALMERSGVPVVPGYHG--EEQDASFLADRAREIGYPVLIKARAGGGGKGMRRVERQEDF 177 Query: 205 AIAVDLA------FEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A++ A D V++E+ + K R IE V G+ + E Sbjct: 178 GPALEAARREAESAFGDGSVLLERYLTKPRHIEMQVFGDRHGNIVHLFERD--CSLQRRH 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENE-----VV 312 K I+E + E+ + AV+A Q +G G V+ N Sbjct: 236 QKVIEE-----APAPGMTAEVRRAMGDAAVRAAQAIGYVGAGTVEFIADVTNGLWPDHFY 290 Query: 313 INEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 E+NT + P +G+ + R+ + Sbjct: 291 FMEMNTRLQVEH----PVTEAITGIDLVEWQLRVASGEPLPKKQADI 333 >ref|NP_011453.1| (NC_001139) converts pyruvate to oxaloacetate; Pyc1p [Saccharomyces cerevisiae] sp|P11154|PYC1_YEAST PYRUVATE CARBOXYLASE 1 (PYRUVIC CARBOXYLASE 1) (PCB 1) pir||QYBYP pyruvate carboxylase (EC 6.4.1.1) 1 [validated] - yeast (Saccharomyces cerevisiae) emb|CAA96765.1| (Z72584) ORF YGL062w [Saccharomyces cerevisiae] Length = 1178 Score = 218 bits (556), Expect = 6e-56 Identities = 49/323 (15%), Positives = 99/323 (30%), Gaps = 25/323 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV----PGKHE 84 + +R ++ + + + + Y H A + +V P Sbjct: 21 KILVANRGEIPIRIFRTAHELSMQTVAIYSHEDRLSTHKQKADEAYVIGEVGQYTPVGAY 80 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + VD I P +G L E+ + A + ++G + DK Sbjct: 81 LAIDEIISIAQKHQVDFIHPG-YGFLSENSEFADKVVKAGITWIGPPAEVIDSVGDKVSA 139 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + L A + P + ++ G P+ +K A G G+ V + Sbjct: 140 RNLAAKANVPTVPGTPGPI--ETVEEALDFVNEYGYPVIIKAAFGGGGRGMRVVREGDDV 197 Query: 205 AIAVDLA------FEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A A + VE+ + + IE +L +++ E Sbjct: 198 ADAFQRATSEARTAFGNGTCFVERFLDKPKHIEVQLLADNHGNVVHLFERD--CSVQRRH 255 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ V + E+ D I AV+ + G + + +N EIN Sbjct: 256 QKVVE-----VAPAKTLPREVRDAILTDAVKLAKECGYRNAGTAEFLVDNQNRHYFIEIN 310 Query: 318 TLPGFTNISMYPKLWQASGLGYT 340 + + +G+ Sbjct: 311 PRIQVEHT----ITEEITGIDIV 329 >pir||T39734 pyruvate carboxylase (EC 6.4.1.1) [similarity] - fission yeast (Schizosaccharomyces pombe) emb|CAB52809.1| (AL109846) pyruvate carboxylase (EC 6.4.1.1) [Schizosaccharomyces pombe] Length = 1185 Score = 218 bits (556), Expect = 6e-56 Identities = 44/343 (12%), Positives = 103/343 (29%), Gaps = 25/343 (7%) Query: 18 EVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA 77 + S + + +R ++ + + + + Y H + + Sbjct: 24 DRSSLLGEKFTKVLVANRSEIAIRVFRTAHELSMHTVAIYSYEDRLSMHRQKADESYPIG 83 Query: 78 QV----PGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVL 133 +V P + + + +++ P +G L E+ + A + FVG Sbjct: 84 KVGQYSPVGAYLAIDEIVSIAKRTGANLVHPG-YGFLSENAEFARKVNEAGMQFVGPSPE 142 Query: 134 ASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSV 193 + DK + + G+ + P H + GLP+ +K A G Sbjct: 143 VIDSLGDKTKARAIAIRCGVPVVPGTPGPV--EHYEEAEAFVKEYGLPVIIKAAMGGGGR 200 Query: 194 GVSKVTSEEQYAIAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGE 246 G+ V S + + + A D V +E+ + + IE ++ + E Sbjct: 201 GMRVVRSADTLKESFERARSEALASFGDGTVFIERFLDKPKHIEIQLMADKAGNVIHLHE 260 Query: 247 IVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT 306 K ++ + + P+I + A++ + + + L Sbjct: 261 RD--CSVQRRHQKVVE-----IAPAKDLDPKIRQALYDDAIKIAKEVKYCNAGTAEFLLD 313 Query: 307 PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 + EIN + + +G+ + Sbjct: 314 QKGRHYFIEINPRIQVEHT----ITEEITGVDIVSAQLHVAAG 352 >ref|NP_509293.1| (NM_076892) Propionyl-coA carboxylase alpha chain precursor [Caenorhabditis elegans] pir||T16187 hypothetical protein F27D9.5 - Caenorhabditis elegans gb|AAA93384.1| (U49829) Hypothetical protein F27D9.5 [Caenorhabditis elegans] Length = 724 Score = 218 bits (555), Expect = 7e-56 Identities = 57/342 (16%), Positives = 115/342 (32%), Gaps = 22/342 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKHEH 85 + +R ++ I + + + + H+ + A + + P K Sbjct: 49 FDKILIANRGEIACRVIKTARAMGIKTVAVHSDVDSNSLHVKMADEAVCVGEAPTAKSYL 108 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + + P +G L E+ L A F+G + A DK +K Sbjct: 109 RADRILQAVEDTGAQAVHPG-YGFLSENTKFAAELEKAGAKFIGPNSKAILDMGDKIHSK 167 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 ++ A +++ P A+ +V +G P+ +K + G G+ +++Q Sbjct: 168 KIATAARVSMIPGYDGEIADE--DMCVKVSRDIGYPVMIKASAGGGGKGMRVAWNDKQAR 225 Query: 206 IAV----DLAF--EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A D +++VE+ I R IE VL + + A E + Sbjct: 226 EGYRLSKQEAASSFGDDRMLVEKFIDNPRHIEMQVLCDKHGNALWLNER--ECSIQRRNQ 283 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K I+E + + PE+ K+ AVQ + +G V+ + + E+NT Sbjct: 284 KVIEE-----APSSFVPPEMRRKMGEQAVQLAKAVGYDSAGTVEFLVDSQRNFYFLEMNT 338 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + P +G+ + R+ + Sbjct: 339 RLQVEH----PITECITGIDIVQQMLRVSYGHPLPITQEQVP 376 >ref|NP_250702.1| (NC_002516) probable acyl-CoA carboxylase alpha chain [Pseudomonas aeruginosa] pir||A83395 probable acyl-CoA carboxylase alpha chain PA2012 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG05400.1|AE004627_8 (AE004627) probable acyl-CoA carboxylase alpha chain [Pseudomonas aeruginosa] Length = 655 Score = 218 bits (555), Expect = 7e-56 Identities = 62/344 (18%), Positives = 112/344 (32%), Gaps = 22/344 (6%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV-PGKH 83 ++I + +R ++ + + + + H+A A L P Sbjct: 6 RSIQRLLVANRGEIACRVMRSARALGIGSVAVHSDIDRHARHVAEADIAVDLGGAKPADS 65 Query: 84 EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + I P +G L E+ A L F+G A A K Sbjct: 66 YLRGDRIIAAALASGAQAIHPG-YGFLSENADFARACEEAGLLFLGPPAAAIDAMGSKSA 124 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 K L+ +AG+ + P + +F ++G P+ +K A G G+ V E + Sbjct: 125 AKALMEEAGVPLVPGYHG--EAQDLETFRREAGRIGYPVLLKAAAGGGGKGMKVVEREAE 182 Query: 204 YAIAVDL------AFEFDHKVIVEQG-IKGREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 A A+ A D +++VE+ +K R +E V + + E Sbjct: 183 LAEALSSAQREAKAAFGDARMLVEKYLLKPRHVEIQVFADRHGHCLYLNERD--CSIQRR 240 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEI 316 K ++E + E+ + AV+A Q +G G V+ L + E+ Sbjct: 241 HQKVVEE-----APAPGLGAELRRAMGEAAVRAAQAIGYVGAGTVEFLLDERGQFFFMEM 295 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 NT + P +GL R+ + Sbjct: 296 NTRLQVEH----PVTEAITGLDLVAWQIRVARGEALPLTQEQVP 335 >ref|NP_539644.1| (NC_003317) D-ALANINE--D-ALANINE LIGASE A [Brucella melitensis] gb|AAL51908.1| (AE009514) D-ALANINE--D-ALANINE LIGASE A [Brucella melitensis] Length = 366 Score = 218 bits (555), Expect = 8e-56 Identities = 146/355 (41%), Positives = 223/355 (62%), Gaps = 12/355 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K+R+ ++FGG+SAEH+VS+ SA N+++A+D ++++ V + + + GQW +S N L Sbjct: 18 KMRIVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKP 77 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + L + DA +D+IFP++HG GEDG++QG+ +V Sbjct: 78 SSG------AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQV 131 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 A +P G + SA +DKD+ KRL+ +AGL+ A +T+TR +F+ +E LGLP+ Sbjct: 132 ARVPLAGCGIPGSANALDKDIAKRLVNEAGLSTAKSVTITREE--VPAFSALEQALGLPI 189 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP--Q 240 F+KPA QGSSVGV KV +E Y A+ F +D K++ E+ I+ RE+EC VL ++ Sbjct: 190 FIKPARQGSSVGVHKVVTEADYQAAMSDGFIYDDKLLAEEFIQAREVECGVLEDEGGALF 249 Query: 241 ASTCGEIV--LTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 S GEIV + FY+YD KYID DG ++ VPA + ++ ++IRAIA +A++ LGC M Sbjct: 250 VSRAGEIVPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSM 309 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 ARVD F+T + +V+NEINT+PGFT++SMY K+ SG+ Y ++I RL+ L R Sbjct: 310 ARVDFFVTADRRIVLNEINTIPGFTDMSMYFKVMAVSGVSYPEIINRLVAHGLAR 364 >dbj|BAA11239.1| (D78170) pyruvate carboxylase [Schizosaccharomyces pombe] Length = 1185 Score = 217 bits (554), Expect = 1e-55 Identities = 44/343 (12%), Positives = 103/343 (29%), Gaps = 25/343 (7%) Query: 18 EVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA 77 + S + + +R ++ + + + + Y H + + Sbjct: 24 DRSSLLGEKFTKVLVANRSEIAIRVFRTAHELSMHTVAIYSYEDILSMHRQKADESYPIG 83 Query: 78 QV----PGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVL 133 +V P + + + +++ P +G L E+ + A + FVG Sbjct: 84 KVGQYSPVGAYLAIDEIVSIAKRTGANLVHPG-YGFLSENAEFARKVNEAGMQFVGPSPE 142 Query: 134 ASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSV 193 + DK + + G+ + P H + GLP+ +K A G Sbjct: 143 VIDSLGDKTKARAIAIRCGVPVVPGTPGPV--EHYEEAEAFVKEYGLPVIIKAAMGGGGR 200 Query: 194 GVSKVTSEEQYAIAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGE 246 G+ V S + + + A D V +E+ + + IE ++ + E Sbjct: 201 GMRVVRSADTLKESFERARSEALASFGDGTVFIERFLDKPKHIEIQLMADKAGNVIHLHE 260 Query: 247 IVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT 306 K ++ + + P+I + A++ + + + L Sbjct: 261 RD--CSVQRRHQKVVE-----IAPAKDLDPKIRQALYDDAIKIAKEVKYCNAGTAEFLLD 313 Query: 307 PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 + EIN + + +G+ + Sbjct: 314 QKGRHYFIEINPRIQVEHT----ITEEITGVDIVSAQLHVAAG 352 >ref|NP_464882.1| (NC_003210) acetyl-CoA carboxylase subunit (biotin carboxylase subunit) [Listeria monocytogenes EGD-e] emb|CAC99435.1| (AL591978) acetyl-CoA carboxylase subunit (biotin carboxylase subunit) [Listeria monocytogenes] Length = 454 Score = 217 bits (553), Expect = 1e-55 Identities = 66/344 (19%), Positives = 119/344 (34%), Gaps = 23/344 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKH-E 84 I + +R ++ + I + V + Y + HI L A + K Sbjct: 1 MIKKVLVANRGEIAVRIIRAAKELGVETVAIYSEADREALHIQLADEAYCVGPAATKDSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + L D I P +G L E+ + N+ F+G A + KDV Sbjct: 61 LNMSNIISLAVLTNCDAIHPG-YGFLAENADFAELCEDCNITFIGPSASAISQMGTKDVA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + +R AG+ I P A+ ++ K+G P+ +K G G+ +EE+ Sbjct: 120 RETMRKAGVPIVPGSQGIVAD--VEDGKKIAKKIGYPVIIKATAGGGGKGIRVAENEEKL 177 Query: 205 AIAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + A D V +E+ I R +E VL +++ GE Sbjct: 178 ISGIHTTQQEAEAAFGDPGVYLEKYIQDFRHVEIQVLADNHGNVIHLGERD--CSIQRRL 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEI 316 K I+E AI + K+ AV+A + + +G ++ EN E+ Sbjct: 236 QKLIEE-----SPSPAIDEKTRQKMGKAAVKAAKAVNYSGAGTIEFIYDHHENNFYFMEM 290 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 NT + P +G+ + + + Sbjct: 291 NTRIQVEH----PVTELVTGIDLVKQQFLVASGEELQIKQADVK 330 >ref|NP_312155.1| (NC_002695) acetyl CoA carboxylase biotin carboxylase subunit [Escherichia coli O157:H7] dbj|BAB37551.1| (AP002564) acetyl CoA carboxylase biotin carboxylase subunit [Escherichia coli O157:H7] Length = 449 Score = 217 bits (553), Expect = 1e-55 Identities = 50/343 (14%), Positives = 105/343 (30%), Gaps = 22/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HE 84 + + +R ++ L + + + + + D H+ L + P Sbjct: 1 MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + I P +G L E+ + + + F+G DK Sbjct: 61 LNIPAIISAAEITGAVAIHPG-YGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 ++ AG+ P + + + + ++G P+ +K + G G+ V + + Sbjct: 120 IAAMKKAGVPCVPGSDGPLGDDMDKN-RAIAKRIGYPVIIKASGGGGGRGMRVVRGDAEL 178 Query: 205 AI------AVDLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A A + V +E+ + R +E VL + + E Sbjct: 179 AQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNSIYLAERD--CSMQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E I PE+ I +A +G G + E E+N Sbjct: 237 QKVVEE-----APAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF-ENGEFYFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P +G+ R+ + Sbjct: 291 TRIQVEH----PVTEMITGVDLIKEQLRIAAGQPLSIKQEEVH 329 >ref|NP_470730.1| (NC_003212) acetyl-CoA carboxylase subunit (biotin carboxylase subunit) [Listeria innocua] emb|CAC96625.1| (AL596168) acetyl-CoA carboxylase subunit (biotin carboxylase subunit) [Listeria innocua] Length = 454 Score = 217 bits (553), Expect = 1e-55 Identities = 66/344 (19%), Positives = 119/344 (34%), Gaps = 23/344 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKH-E 84 I + +R ++ + I + V + Y + HI L A + K Sbjct: 1 MIKKVLVANRGEIAVRIIRAAKELGVETVAIYSEADKEALHIQLADEAYCVGPAATKDSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + L D I P +G L E+ + N+ F+G A + KDV Sbjct: 61 LNMSNIISLAVLTNCDAIHPG-YGFLAENADFAELCEDCNITFIGPSASAISQMGTKDVA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + +R AG+ I P A+ ++ K+G P+ +K G G+ +EE+ Sbjct: 120 RETMRKAGVPIVPGSQGIVAD--VEDGKKIAKKIGYPVIIKATAGGGGKGIRVAENEEKL 177 Query: 205 AIAVD------LAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + A D V +E+ I R +E VL +++ GE Sbjct: 178 ISGIQTTQQEAEAAFGDPGVYLEKYIQDFRHVEIQVLADNHGNVIHLGERD--CSIQRRL 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEI 316 K I+E AI + K+ AV+A + + +G ++ EN E+ Sbjct: 236 QKLIEE-----SPSPAIDEKTRQKMGKAAVKAAKAVNYSGAGTIEFIFDHHENNFYFMEM 290 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 NT + P +G+ + + + Sbjct: 291 NTRIQVEH----PVTELVTGIDLVKQQFLVASGEELKIKQADVK 330 >ref|NP_417722.1| (NC_000913) acetyl CoA carboxylase, biotin carboxylase subunit [Escherichia coli K12] sp|P24182|ACCC_ECOLI BIOTIN CARBOXYLASE (A SUBUNIT OF ACETYL-COA CARBOXYLASE (ACC) pir||JS0632 acetyl-CoA carboxylase (EC 6.4.1.2) biotin carboxylase chain [validated] - Escherichia coli pdb|1DV1|A Chain A, Structure Of Biotin Carboxylase (Apo) pdb|1DV1|B Chain B, Structure Of Biotin Carboxylase (Apo) pdb|1BNC|A Chain A, Mol_id: 1; Molecule: Biotin Carboxylase; Chain: A, B; Ec: 6.3.4.14 pdb|1BNC|B Chain B, Mol_id: 1; Molecule: Biotin Carboxylase; Chain: A, B; Ec: 6.3.4.14 gb|AAA23409.1| (M80458) biotin carboxylase [Escherichia coli] gb|AAA23746.1| (M83198) biotin carboxylase [Escherichia coli] gb|AAA58059.1| (U18997) biotin carboxylase [Escherichia coli] gb|AAC76288.1| (AE000404) acetyl CoA carboxylase, biotin carboxylase subunit [Escherichia coli K12] Length = 449 Score = 217 bits (553), Expect = 1e-55 Identities = 51/343 (14%), Positives = 105/343 (29%), Gaps = 22/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HE 84 + + +R ++ L + + + + + D H+ L + P Sbjct: 1 MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + I P +G L E+ + + + F+G DK Sbjct: 61 LNIPAIISAAEITGAVAIHPG-YGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 ++ AG+ P + + + + ++G P+ +K + G G+ V + + Sbjct: 120 IAAMKKAGVPCVPGSDGPLGDDMDKN-RAIAKRIGYPVIIKASGGGGGRGMRVVRGDAEL 178 Query: 205 AI------AVDLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A A + V +E+ + R +E VL + A E Sbjct: 179 AQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERD--CSMQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E I PE+ I +A +G G + E E+N Sbjct: 237 QKVVEE-----APAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF-ENGEFYFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P +G+ R+ + Sbjct: 291 TRIQVEH----PVTEMITGVDLIKEQLRIAAGQPLSIKQEEVH 329 >ref|NP_457756.1| (NC_003198) biotin carboxylase [Salmonella enterica subsp. enterica serovar Typhi] ref|NP_462290.1| (NC_003197) acetyl CoA carboxylase, biotin carboxylase subunit [Salmonella typhimurium LT2] gb|AAL22249.1| (AE008856) acetyl CoA carboxylase, biotin carboxylase subunit [Salmonella typhimurium LT2] emb|CAD07895.1| (AL627278) biotin carboxylase [Salmonella enterica subsp. enterica serovar Typhi] Length = 449 Score = 217 bits (552), Expect = 2e-55 Identities = 55/342 (16%), Positives = 105/342 (30%), Gaps = 22/342 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HE 84 + + +R ++ L + + + + + D H+ L + P Sbjct: 1 MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + I P +G L E+ + + + F+G DK Sbjct: 61 LNIPAIISAAEITGAVAIHPG-YGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 ++ AG+ P + N + ++G P+ +K + G G+ V S+ + Sbjct: 120 ITAMKKAGVPTVPGSDGPLGDDMNAN-RAHAKRIGYPVIIKASGGGGGRGMRVVRSDAEL 178 Query: 205 A------IAVDLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A A + V +E+ + R IE VL + A E Sbjct: 179 AQSISMTKAEAKAAFSNDMVYMEKYLENPRHIEIQVLADGQGNAIYLAERD--CSMQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E I PE+ I +A +G G + E E+N Sbjct: 237 QKVVEE-----APAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF-ENGEFYFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 T + P +G+ R+ D Sbjct: 291 TRIQVEH----PVTEMITGVDLIKEQLRIAAGQPLSITQDEV 328 >gb|AAG10491.1|AF279106_53 (AF279106) predicted acetyl-CoA carboxylase, biotin carboxylase [uncultured proteobacterium EBAC31A08] Length = 447 Score = 217 bits (552), Expect = 2e-55 Identities = 59/343 (17%), Positives = 110/343 (31%), Gaps = 22/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV-PGKHE 84 + +R ++ L I + + S Y D H+ + P + Sbjct: 1 MSYKVLIANRGEIALRAIRACKELGIKTVSVYSEADKDLKHLRFSDETVCIGPASPTQSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + L + + I+P +G L ED + M + F+G DK Sbjct: 61 LNIPAILSAAELTSANAIYPG-YGFLAEDHNFAEMCEKSGFKFIGPTSETIQKMGDKITA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K L +G+ I P + N F ++ +G P+ +K G G+ V EE Sbjct: 120 KTLAEKSGIQIVPGYKDEIPSD-NDEFKKIARDIGYPIMIKATAGGGGRGMRVVEREEDL 178 Query: 205 AIAVDLAF------EFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 ++ + + +E+ I R IE ++G+ +A G Sbjct: 179 IGHAEITMQEAKNGFGNETIYLEKFIGNPRHIEVQIVGDGKGKAIHLGTRD--CSMQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E I E +K V + + G+ ++ +N+ E+N Sbjct: 237 QKIIEE-----APALNINQEALNKTLIACVNLCEEINYEGVGTIEFLY-EDNQFYFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P +G R+ D+ Sbjct: 291 TRIQVEH----PVTEMITGFDLVKAQLRIALEMPIELNQDDIN 329 >ref|NP_214146.1| (NC_000918) biotin carboxylase [Aquifex aeolicus] pir||C70444 biotin carboxylase - Aquifex aeolicus gb|AAC07527.1| (AE000749) biotin carboxylase [Aquifex aeolicus] Length = 444 Score = 217 bits (552), Expect = 2e-55 Identities = 55/347 (15%), Positives = 116/347 (32%), Gaps = 23/347 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV-PGKHE 84 + +R ++ + I + + + Y + H+ L A + P K Sbjct: 1 MFKRVLIANRGEIAVRAIRACRELGLKTVAIYSEADKNSLHVELADEAICIGPPDPSKSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + D ++P +G L E+ ++ + F+G A DK + Sbjct: 61 LDIPRIMSALEVSKADAVYPG-YGFLSENPKFAEIVEKSGAKFIGPRSEVLAKIGDKVLA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K++ ++ GL + P ++ SK+G P+ +K A G G+ + E++ Sbjct: 120 KKVAKEVGLPLVPGSDEPLEF---SEAVKLASKIGYPVVIKAAAGGGGRGIRIIRDEKEL 176 Query: 205 AIAVDLA------FEFDHKVIVEQG-IKGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 LA D ++ +E+ I + IE V+ +++ GE Sbjct: 177 REKFPLAKKEAESAFGDGRLYIEKYVINPKHIEFQVIADEHGNVYVLGER--ECSIQRRH 234 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E +++ E +I + + LG V+ + E E+N Sbjct: 235 QKLIEE-----APSVSVSEEKRKEISEKVAEFCKRLGYTSAGTVEFLMDEEGNFYFMEMN 289 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALKTTM 364 + P +G+ L + + Sbjct: 290 GRIQVEH----PVTEMVTGVDIVKLQLIAAMGEEIKLEKVETNGFAI 332 >ref|NP_289824.1| (NC_002655) acetyl CoA carboxylase, biotin carboxylase subunit [Escherichia coli O157:H7 EDL933] gb|AAG58384.1|AE005553_6 (AE005553) acetyl CoA carboxylase, biotin carboxylase subunit [Escherichia coli O157:H7 EDL933] Length = 449 Score = 217 bits (552), Expect = 2e-55 Identities = 50/343 (14%), Positives = 104/343 (29%), Gaps = 22/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HE 84 + + +R ++ L + + + + + D H+ L + P Sbjct: 1 MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + I P +G L E+ + + + F+G DK Sbjct: 61 LNIPAIISAAEITGAVAIHPG-YGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 ++ AG+ P + + + + ++G P+ +K + G G+ V + + Sbjct: 120 IAAMKKAGVPCVPGSDGPLGDDMDKN-RAIAKRIGYPVIIKASGGGGGRGMRVVRGDAEL 178 Query: 205 AI------AVDLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A A + V +E+ + R +E VL + E Sbjct: 179 AQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNXIYLAERD--CSMQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E I PE+ I +A +G G + E E+N Sbjct: 237 QKVVEE-----APAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF-ENGEFYFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P +G+ R+ + Sbjct: 291 TRIQVEH----PVTEMITGVDLIKEQLRIAAGQPLSIKQEEVH 329 >gb|AAA23748.1| (M79446) biotin carboxylase [Escherichia coli] Length = 449 Score = 216 bits (550), Expect = 2e-55 Identities = 51/343 (14%), Positives = 105/343 (29%), Gaps = 22/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HE 84 + + +R ++ L + + + + + D H+ L + P Sbjct: 1 MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + I P +G L E+ + + + F+G DK Sbjct: 61 LNIPAIISAAEITGAVAIHPG-YGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 ++ AG+ P + + + + ++G P+ +K + G G+ V + + Sbjct: 120 IAAMKKAGVPCVPGSDGPLGDDMDKN-RAIAKRIGYPVIIKASGGGGGRGMRVVRGDAEL 178 Query: 205 AI------AVDLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A A + V +E+ + R +E VL + A E Sbjct: 179 AQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERD--CSMQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E I PE+ I +A +G G + E E+N Sbjct: 237 QKVVEE-----APAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF-ENGEFYFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P +G+ R+ + Sbjct: 291 TRIQVEH----PVTEMITGVDLIKEQMRIAAGQPLSIKQEEVH 329 >gb|AAC69197.1| (AF097728) pyruvate carboxylase [Aspergillus terreus] Length = 1193 Score = 216 bits (550), Expect = 3e-55 Identities = 48/338 (14%), Positives = 103/338 (30%), Gaps = 26/338 (7%) Query: 15 AEHEVSLQSAKN-IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSA 73 H + SA + +R ++ + + + + + H A Sbjct: 29 VHHRLRANSAIMQFQKILVANRGEIPIRIFRTAHELSLQTVAIFSHEDRLSMHRQKADEA 88 Query: 74 TSLAQ----VPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVG 129 + P + V +I P +G L E+ + A + FVG Sbjct: 89 YMIGHRGQYTPVGAYLAADEIVKIALEHGVHLIHPG-YGFLSENADFARKVEKAGMVFVG 147 Query: 130 SDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQ 189 + DK ++L + + P G P+ +K A Sbjct: 148 PTPDTIDSLGDKVSARQLAIRCNVPVVPGTEGPV--ERYEEVKAFTDTYGFPIIIKAAFG 205 Query: 190 GSSVGVSKVTSEEQYAIAVDLA------FEFDHKVIVEQGIK-GREIECAVLGNDNPQAS 242 G G+ V ++ + + A + V VE+ + + IE +LG+++ Sbjct: 206 GGGRGMRVVRNQADLRDSFERATSEARSAFGNGTVFVERFLDKPKHIEVQLLGDNHGNVV 265 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 E K ++ V + ++ D+I + AV+ +++ + Sbjct: 266 HLFERD--CSVQRRHQKVVE-----VAPAKDLPTDVRDRILSDAVKLAKSVNYRNAGTAE 318 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYT 340 + +N EIN + + +G+ Sbjct: 319 FLVDQQNRHYFIEINPRIQVEHT----ITEEITGIDIV 352 >ref|NP_376481.1| (NC_003106) 513aa long hypothetical biotin carboxylase [Sulfolobus tokodaii] dbj|BAB65590.1| (AP000983) 513aa long hypothetical biotin carboxylase [Sulfolobus tokodaii] Length = 513 Score = 216 bits (550), Expect = 3e-55 Identities = 53/344 (15%), Positives = 110/344 (31%), Gaps = 23/344 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHEH 85 + +R ++ + + + + + Y H+ A + P + Sbjct: 4 FGKVLVANRGEIAVRVMKAIKEMGMKAVAVYSEADKYALHVKYADEAYYIGPPPALESYL 63 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + + D + P +G L E+ + A L ++G V A A K K Sbjct: 64 NIQAIIDAAEKAHADAVHPG-YGFLSENADFAEAVVKAGLTWIGPPVDAMRAIKSKLDGK 122 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 R+ + AG+ I+P ++ K+G P+ VK A G G+++V + +Q Sbjct: 123 RIAKQAGVPISPGSDGPV--DSLDEALKLAEKIGYPIMVKAAFGGGGTGITRVDNPDQLV 180 Query: 206 IAVD------LAFEFDHKVIVEQ-GIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 + + +E+ + R IE ++G+ E + Sbjct: 181 EVWERNKRLAYQAFGKADLYIEKAAVNPRHIEFQLIGDKYGNYVVAWER--ECTIQRRNQ 238 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD-VFLTPENEVVINEIN 317 K I+E A+ E +++ ++ Q + + + VF E E+N Sbjct: 239 KLIEE-----APSPALKMEERERMFEPIIKFGQIIHYYTLGTFETVFSDTTREFYFLELN 293 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALK 361 + P + L + + K Sbjct: 294 KRLQVEH----PITEMIFRIDLVKLQINIAAGEPLPFTQEELNK 333 >emb|CAC19838.1| (AJ009972) pyruvate carboxylase [Aspergillus niger] Length = 1192 Score = 216 bits (549), Expect = 3e-55 Identities = 47/330 (14%), Positives = 103/330 (30%), Gaps = 26/330 (7%) Query: 23 SAKN-IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ--- 78 SA + +R ++ + + + + Y H A + + Sbjct: 36 SAIMQFQKILVANRGEIPIRIFRTAHELSLQTVAVYSHEDHLSMHRQKADEAYMIGKRGQ 95 Query: 79 -VPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAA 137 P + + V +I P +G L E+ + + + FVG + Sbjct: 96 YTPVGAYLAIDEIVKIALEHGVHLIHPG-YGFLSENAEFARKVEQSGMVFVGPTPQTIES 154 Query: 138 CMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSK 197 DK ++L + + P G P+ +K A G G+ Sbjct: 155 LGDKVSARQLAIRCDVPVVPGTPGPV--ERYEEVKAFTDTYGFPIIIKAAFGGGGRGMRV 212 Query: 198 VTSEEQYAIAVDLA------FEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLT 250 V + + + + A + V VE+ + + IE +LG+++ E Sbjct: 213 VRDQAELRDSFERATSEARSAFGNGTVFVERFLDRPKHIEVQLLGDNHGNVVHLFERD-- 270 Query: 251 SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENE 310 K ++ + + ++ D+I A AV+ +++ + + +N Sbjct: 271 CSVQRRHQKVVE-----IAPAKDLPADVRDRILADAVKLAKSVNYRNAGTAEFLVDQQNR 325 Query: 311 VVINEINTLPGFTNISMYPKLWQASGLGYT 340 EIN + + +G+ Sbjct: 326 YYFIEINPRIQVEHT----ITEEITGIDIV 351 >gb|AAD25800.1|AC006550_8 (AC006550) Identical to gb|U12536 3-methylcrotonyl-CoA carboxylase precursor protein from Arabidopsis thaliana. ESTs gb|H35836, gb|AA651295 and gb|AA721862 come from this gene Length = 730 Score = 215 bits (548), Expect = 4e-55 Identities = 52/343 (15%), Positives = 109/343 (31%), Gaps = 27/343 (7%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HEH 85 I + +R ++ + + + + Y D H+ A + + Sbjct: 38 IEKILVANRGEIACRIMRTAKRLGIQTVAVYSDADRDSLHVKSADEAVRIGPPSARLSYL 97 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + I P +G L E + + L F+G A DK +K Sbjct: 98 SGVTIMEAAARTGAQAIHPG-YGFLSESSDFAQLCEDSGLTFIGPPASAIRDMGDKSASK 156 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 R++ AG+ + P + K+G P+ +KP + G G+ V S + +A Sbjct: 157 RIMGAAGVPLVPGYHGH--EQDIDHMKSEAEKIGYPIIIKPTHGGGGKGMRIVQSGKDFA 214 Query: 206 IAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 + A + +++E+ I + R IE V+ + E ++ D + Sbjct: 215 DSFLGAQREAAASFGVNTILLEKYITRPRHIEVQVVSREISCCFFFHERLIFGDKHGNVL 274 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEIN 317 + D + + + + I +A +G V+ + ++ E+N Sbjct: 275 HLYERDCS-----------VQRRHQKIIEEAPAAVGYYNAGTVEFIVDTESDQFYFMEMN 323 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P G + R+ + Sbjct: 324 TRLQVEH----PVTEMIVGQDLVEWQIRVANGEPLPLSQSEVP 362 >ref|NP_047031.1| (NC_001905) PCACA; L549.5 [Leishmania major] pir||T02793 propionyl CoA carboxylase (alpha chain) PCACA [imported] - Leishmania major (strain Friedlin) gb|AAC24617.1| (AE001274) PCACA; L549.5 [Leishmania major] Length = 665 Score = 215 bits (548), Expect = 5e-55 Identities = 54/342 (15%), Positives = 110/342 (31%), Gaps = 22/342 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA-QVPGKHEH 85 + +R ++ + + + + Y + H+ + + + Sbjct: 6 FDKVLVANRGEIACRVMATCQRLGIKTVAVYSTADEQAKHVKVADEGVCIGPPASVESYL 65 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + + + P +G L E+G Q L N+ FVG D + A DK +K Sbjct: 66 CIDKIVDACKKTGAQAVHPG-YGFLSENGEFQAALHKNNIIFVGPDAHSIEAMGDKIESK 124 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 RL AG+ P + + ++G P+ +K + G G+ ++ Q Sbjct: 125 RLAHSAGVTCIPGFIGEVK--THEDVLKFAREVGYPVMIKASGGGGGKGMRVAYNDSQCV 182 Query: 206 IAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A K++VE+ I R IE V+ + E + Sbjct: 183 EYYDMCREEAKAAFNSDKMLVEKFIENPRHIEIQVIADRRGNTLYLPER--ECSIQRRNQ 240 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K I+E + + + AV + + V+ + P+ + E+NT Sbjct: 241 KVIEE-----APSVLLDAKTRKAMGEEAVAMARAVQYVSAGTVENVVNPQKQFYFLEMNT 295 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + P + +G+ + + R D+ Sbjct: 296 RLQVEH----PITEEITGIDLVEQMLRAAADLPLSITQDDIK 333 >ref|NP_106581.1| (NC_002678) 3-methylcrotonyl-CoA carboxylase biotin-containing subunit [Mesorhizobium loti] dbj|BAB52367.1| (AP003008) 3-methylcrotonyl-CoA carboxylase biotin-containing subunit [Mesorhizobium loti] Length = 653 Score = 215 bits (548), Expect = 5e-55 Identities = 61/350 (17%), Positives = 121/350 (34%), Gaps = 27/350 (7%) Query: 24 AKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-K 82 K + +R ++ I + ++ Y H+A+ A + P + Sbjct: 2 GKLFSKILIANRGEIACRVIRTARRLGMATVGVYSDADAKSLHVAMAGEAVHIGASPVAE 61 Query: 83 HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKD 142 + + I P +G L E + A L F+G + A KD Sbjct: 62 SYLKADRIIDAALKTGAQAIHPG-YGFLSEAPDFVERVEAAGLVFIGPSASSIRAMGLKD 120 Query: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEE 202 KRL+ G+ + P + ++ + ++G P+ +K G G+ +V + Sbjct: 121 AAKRLMEITGVPVVPGYHGEAQDPALLASRAI--EIGFPVLIKARAGGGGKGMRRVETAG 178 Query: 203 QYAIAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYA 255 ++A A+ A D KV++E+ ++ R IE V G+++ E Sbjct: 179 EFADALASAQREAKASFGDDKVLIEKYVEKPRHIEVQVFGDNHGNGVHLFERD--CSAQR 236 Query: 256 YDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE-----NE 310 K I+E + PE+ + AV+A + + +G ++ + + Sbjct: 237 RHQKVIEE-----APAPGMTPEMRVAMTHAAVKAAKAINYSGAGTIEFIVDASEGLRADR 291 Query: 311 VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 E+NT + P +G + R+ L D+ Sbjct: 292 FWFMEMNTRLQVEH----PMTEMVTGQDLVEWQIRVAAGELLPLTQDDIH 337 >pir||T06565 acetyl-CoA carboxylase (EC 6.4.1.2) biotin carboxylase chain - soybean (fragment) gb|AAA85742.1| (U34393) acetyl-CoA carboxylase biotin carboxylase subunit [Glycine max] Length = 289 Score = 215 bits (547), Expect = 7e-55 Identities = 46/298 (15%), Positives = 94/298 (31%), Gaps = 17/298 (5%) Query: 33 KSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA-QVPGKHEHQLIDAQ 91 +R + +L I + + + Y D H+ A + + Sbjct: 1 ANRGETLLRVIRTCREMGIKTVAVYSTADKDSLHVRFADEAACIGKPAGVDSYLNIPHIM 60 Query: 92 NGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDA 151 + D + P +G L E+ + + F+G DK K + A Sbjct: 61 AAAEITNADAVHPG-YGFLAENAKFSQICADHGIKFIGPTPDMINNMGDKITAKETMIKA 119 Query: 152 GLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV--- 208 G+ + P + ++ +G P+ +K G G+ V E + A Sbjct: 120 GVPVVPGSGGL-LESLEQAKDLAKNHVGYPVILKATAGGGGEGMRVVWEESELERAYNTA 178 Query: 209 ---DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDED 264 A + + +E+ + + R IE V G+ E K ++E Sbjct: 179 KAEAAASFKNDGIYMEKFVEEPRHIEIQVAGDQYGNVCHLSERD--CSIQRRHQKLVEE- 235 Query: 265 GAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGF 322 + E+ +K+ A A++A + + ++ + E+NT Sbjct: 236 ----SPSPFMTDELREKMGAAAIKAASAINYESVGTIEFLVDKHRNFYFMEMNTRLQV 289 >pdb|1DV2|A Chain A, The Structure Of Biotin Carboxylase, Mutant E288k, Complexed With Atp pdb|1DV2|B Chain B, The Structure Of Biotin Carboxylase, Mutant E288k, Complexed With Atp Length = 452 Score = 215 bits (547), Expect = 7e-55 Identities = 50/343 (14%), Positives = 105/343 (30%), Gaps = 22/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HE 84 + + +R ++ L + + + + + D H+ L + P Sbjct: 4 MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSY 63 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + I P +G L E+ + + + F+G DK Sbjct: 64 LNIPAIISAAEITGAVAIHPG-YGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSA 122 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 ++ AG+ P + + + + ++G P+ +K + G G+ V + + Sbjct: 123 IAAMKKAGVPCVPGSDGPLGDDMDKN-RAIAKRIGYPVIIKASGGGGGRGMRVVRGDAEL 181 Query: 205 AI------AVDLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A A + V +E+ + R +E VL + A E Sbjct: 182 AQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERD--CSMQRRH 239 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E I PE+ I +A +G G + E ++N Sbjct: 240 QKVVEE-----APAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF-ENGEFYFIKMN 293 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P +G+ R+ + Sbjct: 294 TRIQVEH----PVTEMITGVDLIKEQLRIAAGQPLSIKQEEVH 332 >ref|NP_420982.1| (NC_002696) propionyl-CoA carboxylase, alpha subunit [Caulobacter crescentus] gb|AAK24150.1| (AE005890) propionyl-CoA carboxylase, alpha subunit [Caulobacter crescentus] Length = 669 Score = 214 bits (545), Expect = 9e-55 Identities = 49/328 (14%), Positives = 104/328 (30%), Gaps = 22/328 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 + +R ++ + I + + Y + + + P + Sbjct: 1 MFSKILIANRGEIAVRVIKTCRRLGIKTVVVYSDADAGSLAVEMADETVHIGASPANQSY 60 Query: 86 QL-IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + P G L E+ + F+G + A +A DK + Sbjct: 61 LVADKIIAACKQTGAQAVHPGF-GFLSENAGFAQRCADEGIVFIGPNPGAISAMGDKIES 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K+ + AG++ P A+ ++ ++G P+ +K + G G+ + + Sbjct: 120 KKFAQAAGVSCVPGHIGEIADTAE--AVKISEEIGYPVMIKASAGGGGKGIRVAWTRKDV 177 Query: 205 AIAV------DLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A D ++ +E+ I+ R IE VLG+ + E + Sbjct: 178 EEGFPAVRAEAKASFGDDRIFIEKFIESPRHIEIQVLGDKHGNVVHLFER--ECSIQRRN 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E + + + A AV + + V+ + E+N Sbjct: 236 QKVIEE-----APSPLLDEATRNAMGAQAVALAKAVNYDSAGTVEFVAGQDKSFFFLEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITR 345 T + P +GL + + R Sbjct: 291 TRLQVEH----PVTELITGLDLVEQMIR 314 >pdb|1EHI|A Chain A, D-Alanine:d-Lactate Ligase (Lmddl2) Of Vancomycin-Resistant Leuconostoc Mesenteroides pdb|1EHI|B Chain B, D-Alanine:d-Lactate Ligase (Lmddl2) Of Vancomycin-Resistant Leuconostoc Mesenteroides Length = 377 Score = 214 bits (545), Expect = 1e-54 Identities = 125/369 (33%), Positives = 209/369 (55%), Gaps = 13/369 (3%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSR-FDVVLLGIDKQGQWHVSDASNYLL 59 M K RV ++FGG S+EH+VS +SA+N +AI+ + +++++ I + G + +++S +L Sbjct: 1 MTKKRVALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKIL 60 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 +D I T L + D+ FP+VHG LGEDG+LQG+ Sbjct: 61 ALEDEQPIVDAFMKTV------DASDPLARIHALKSAGDFDIFFPVVHGNLGEDGTLQGL 114 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ + P+VG+ + A DK +TK LL G+ +I + + +N S+ ++ ++LG Sbjct: 115 FKLLDKPYVGAPLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELG 174 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGNDN 238 +FVK ANQGSSVG+S+VT+ E+Y A+ +F++D+KV++E+ + G RE+E V+GND Sbjct: 175 NIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVNGARELEVGVIGNDQ 234 Query: 239 PQASTCGEIVLT-----SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 P S G + +Y Y+ K++D +PA ++PE+ +++ +A+ AY+ L Sbjct: 235 PLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQLSPEVTKEVKQMALDAYKVL 294 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G AR+D L N + E NTLPGFTN+S++ +LW S + L+ LI+ E Sbjct: 295 NLRGEARMDFLLDENNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLIDYGFED 354 Query: 354 HAADNALKT 362 A + L Sbjct: 355 FAQNKKLSY 363 >ref|NP_266934.1| (NC_002662) biotin carboxylase (EC 6.3.4.14) [Lactococcus lactis subsp. lactis] gb|AAK04876.1|AE006311_7 (AE006311) biotin carboxylase (EC 6.3.4.14) [Lactococcus lactis subsp. lactis] Length = 455 Score = 214 bits (544), Expect = 1e-54 Identities = 58/344 (16%), Positives = 112/344 (31%), Gaps = 23/344 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 + +R ++ + I + V + Y D H+ L A + + Sbjct: 1 MFNKILIANRGEIAVRIIRAARELGVGTVAIYSTADRDALHVHLADEAICVGPARSTESY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + I P G L E+ + N+ F+G DK Sbjct: 61 LNMNNILSAAVATGAQAIHPGF-GFLSENSKFARLCEEMNIKFIGPSAKVMDMMGDKINA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + + AG+ + P ++ ++G P+ +K + G G+ KV + E+ Sbjct: 120 RAEMIKAGVPVTPGSEGEVH--TTDEAVKIAEEIGYPIMLKASAGGGGKGIRKVNNVEEL 177 Query: 205 AI------AVDLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A + + +E+ I R IE +LG+ GE + Sbjct: 178 VPAFEAAQAEAQAAFGNGAMFIERMIFPARHIEVQILGDSQGNVIHLGERD--CSLQRNN 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTP-ENEVVINEI 316 K ++E AI + ++I A AV+A Q + ++ L + E+ Sbjct: 236 QKVLEE-----SPSVAIGHTLRNEITAAAVKAAQHVSYENAGTIEFLLDESSGKFYFMEM 290 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 NT + P SG+ R+ ++ Sbjct: 291 NTRVQVEH----PVTEFVSGVDIVKEQIRVANGNELSVKQEDVT 330 >ref|NP_282436.1| (NC_002163) biotin carboxylase [Campylobacter jejuni] pir||G81271 biotin carboxylase (EC 6.3.4.14) Cj1290c [imported] - Campylobacter jejuni (strain NCTC 11168) emb|CAB73717.1| (AL139078) biotin carboxylase [Campylobacter jejuni] Length = 443 Score = 214 bits (544), Expect = 1e-54 Identities = 56/343 (16%), Positives = 119/343 (34%), Gaps = 21/343 (6%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHE 84 I + +R ++ L + + Y D ++ ++ + + Sbjct: 1 MEIKSILIANRGEIALRALRTIKEMGKKAICVYSEADKDALYLKYADASICIGKARSSES 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + I A +G L E+ + + N+ F+G V A DK Sbjct: 61 YLNIPAIIAAAEIAEADAIFPGYGFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKA 120 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K++++ AG+ + P A + ++ ++G P+ +K A G G+ V +E+ Sbjct: 121 KQVMQRAGVPVIPGSDGALAGA--EAAKKLAKEIGYPVILKAAAGGGGRGMRVVENEKDL 178 Query: 205 AIAVDLA------FEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A D + +E+ I R IE V+G+ GE Sbjct: 179 EKAYWSAESEAMTAFGDGTMYMEKYIQNPRHIEVQVIGDSFGNVIHVGERD--CSMQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E A + + + ++ A++A + +G G + + + E+N Sbjct: 237 QKLIEESPAIL-----LDEKTRTRLHETAIKAAKAIGYEGAGTFEFLVDKNLDFYFIEMN 291 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + SG+ + + ++ E + ++ Sbjct: 292 TRLQVEHCV----SEMVSGIDIIEQMIKVAE-GYALPSQESIK 329 >ref|NP_360596.1| (NC_003103) propionyl-CoA carboxylase alpha chain precursor [EC:6.4.1.3] [Rickettsia conorii] gb|AAL03497.1| (AE008649) propionyl-CoA carboxylase alpha chain precursor [EC:6.4.1.3] [Rickettsia conorii] Length = 665 Score = 214 bits (544), Expect = 2e-54 Identities = 51/342 (14%), Positives = 117/342 (33%), Gaps = 22/342 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHEH 85 + +R ++ + I + + + Y + ++ A + P + Sbjct: 6 FDKILIANRSEIAVRIIRTLKKMGIKSVAVYSEADTNSMYVQHADEAYYIGDSPATESYL 65 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + + + + P +G L E+ + +L+ + +G DK K Sbjct: 66 SIKNIISAIRESGASAVHPG-YGFLSENPNFANILKREGVVLIGPSAGTIKKMGDKIEAK 124 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 ++ +AG++ P T ++ ++G P+ VK A G G+ V + + A Sbjct: 125 KIAIEAGVSTVPGYMGTI--NDVKQAIDIAKEIGFPVIVKAAAGGGGRGMRVVNNPAEMA 182 Query: 206 IAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A + A D ++ +E+ I+ R IE ++ + + GE + Sbjct: 183 NAFESAKLEAANSFSDDRLFIEKLIQTPRHIEIQLIADQYGNSVCLGER--ECSIQRHHQ 240 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K I+E + I +I ++ + Q +G V+ + E+NT Sbjct: 241 KVIEE-----APSSFITEDIRQEMYRQVISLSQKVGYYSAGTVEFIVDSNKNFYFLEMNT 295 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + P +G+ + + ++ D+ Sbjct: 296 RLQVEH----PVTELITGIDIVEEMIQIAAGEKLSFTQDDVK 333 >ref|NP_220985.1| (NC_000963) PROPIONYL-COA CARBOXYLASE ALPHA CHAIN PRECURSOR (pccA) [Rickettsia prowazekii] pir||C71667 propionyl-COA carboxylase alpha chain precursor (pccA) RP618 - Rickettsia prowazekii emb|CAA15061.1| (AJ235272) PROPIONYL-COA CARBOXYLASE ALPHA CHAIN PRECURSOR (pccA) [Rickettsia prowazekii] Length = 665 Score = 213 bits (543), Expect = 2e-54 Identities = 50/342 (14%), Positives = 115/342 (33%), Gaps = 22/342 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHEH 85 + +R ++ + I + + + Y + ++ A + P Sbjct: 6 FDKILIANRSEIAVRIIRTLKKMGIGSVAVYSEADTNSMYVQHADEAYYIGDSPATASYL 65 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + + + + P +G L E+ + +L+ + +G DK K Sbjct: 66 SVKNLISAIRESGASAVHPG-YGFLSENPNFANILKREGVVLIGPSAGTIKKMGDKIEAK 124 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 ++ +AG++ P T + ++ ++G P+ VK G G+ V + + A Sbjct: 125 KIAIEAGVSTVPGYMGTIKD--VKQAIDIAKEIGFPVIVKATAGGGGRGMRVVNNPAEMA 182 Query: 206 IAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A + A D ++ +E+ I+ R IE ++ + + GE + Sbjct: 183 NAFESAKLEAANSFSDDRLFIEKLIQTPRHIEIQLIADQYGNSVCLGER--ECSIQRHHQ 240 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K I+E + I I ++ + Q +G V+ + E+NT Sbjct: 241 KVIEE-----APSSFITENIRHEMYRQVISLSQKVGYYSAGTVEFIVDSNKNFYFLEMNT 295 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + P +G+ + + ++ D+ Sbjct: 296 RLQVEH----PVTELITGIDIVEEMIKIAAGEKLSFTQDDIK 333 >sp|Q48745|DDL_LEUME D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAA87679.1| (U08909) putative D-alanine:D-alanine ligase [Leuconostoc mesenteroides] Length = 377 Score = 213 bits (543), Expect = 2e-54 Identities = 125/369 (33%), Positives = 209/369 (55%), Gaps = 13/369 (3%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDK-SRFDVVLLGIDKQGQWHVSDASNYLL 59 M K RV ++FGG S+EH+VS +SA+N +AI+ ++++++ I + G + +++S +L Sbjct: 1 MTKKRVALIFGGNSSEHDVSKRSAQNFYNAIEATDKYEIIVFAIAQNGFFLDTESSKKIL 60 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 +D I T L + D+ FP+VHG LGEDG+LQG+ Sbjct: 61 ALEDEQPIVDAFMKTV------DTSDPLARIHALKSAGDFDIFFPVVHGNLGEDGTLQGL 114 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ + P+VG+ + A DK +TK LL G+ +I + + +N S+ ++ ++LG Sbjct: 115 FKLLDKPYVGAPLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELG 174 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGNDN 238 +FVK ANQGSSVG+S+VT+ E+Y A+ +F++D+KV++E+ + G RE+E V+GND Sbjct: 175 NIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVNGARELEVGVIGNDQ 234 Query: 239 PQASTCGEIVLT-----SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 P S G + +Y Y+ K++D +PA ++PE+ +++ +A+ AY+ L Sbjct: 235 PLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFEIPAQLSPEVTKEVKQMALDAYKVL 294 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G AR+D L N + E NTLPGFTN+S++ +LW S + L+ LI+ E Sbjct: 295 NLRGEARMDFLLDENNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLIDYGFED 354 Query: 354 HAADNALKT 362 A + L Sbjct: 355 FAQNKKLSY 363 >gb|AAB18338.1| (U75444) D-Ala-D-Ala ligase2 [Leuconostoc mesenteroides] Length = 377 Score = 213 bits (543), Expect = 2e-54 Identities = 125/369 (33%), Positives = 209/369 (55%), Gaps = 13/369 (3%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSR-FDVVLLGIDKQGQWHVSDASNYLL 59 M K RV ++FGG S+EH+VS +SA+N +AI+ + +++++ I + G + +++S +L Sbjct: 1 MTKKRVALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKIL 60 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 +D I T L + D+ FP+VHG LGEDG+LQG+ Sbjct: 61 ALEDEQPIVDAFMKTV------DASDPLARIHALKSAGDFDIFFPVVHGNLGEDGTLQGL 114 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ + P+VG+ + A DK +TK LL G+ +I + + +N S+ ++ ++LG Sbjct: 115 FKLLDKPYVGAPLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELG 174 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGNDN 238 +FVK ANQGSSVG+S+VT+ E+Y A+ +F++D+KV++E+ + G RE+E V+GND Sbjct: 175 NIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVNGARELEVGVIGNDQ 234 Query: 239 PQASTCGEIVLT-----SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 P S G + +Y Y+ K++D +PA ++PE+ +++ +A+ AY+ L Sbjct: 235 PLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFEIPAQLSPEVTKEVKQMALDAYKVL 294 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G AR+D L N + E NTLPGFTN+S++ +LW S + L+ LI+ E Sbjct: 295 NLRGEARMDFLLDENNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLIDYGFED 354 Query: 354 HAADNALKT 362 A + L Sbjct: 355 FAQNKKLSY 363 >ref|NP_344948.1| (NC_003028) acetyl-CoA carboxylase, biotin carboxylase [Streptococcus pneumoniae TIGR4] gb|AAF98279.1|AF197933_9 (AF197933) acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus pneumoniae] gb|AAK74588.1| (AE007354) acetyl-CoA carboxylase, biotin carboxylase [Streptococcus pneumoniae TIGR4] Length = 455 Score = 212 bits (540), Expect = 4e-54 Identities = 58/343 (16%), Positives = 112/343 (31%), Gaps = 23/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 + +R ++ + I + ++ + Y + H L A + + Sbjct: 1 MFRKILIANRGEIAVRIIRAARELGIATVAVYSTADKEALHTLLADEAVCIGPGKATESY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + L + I P G L E+ M + F+G DK Sbjct: 61 LNINAVLSAAVLTEAEAIHPGF-GFLSENSKFATMCEEVGIKFIGPSGHVMDMMGDKINA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + + AG+ + P N V K+G P+ +K + G G+ KV + Sbjct: 120 RAQMIKAGVPVIPGSDGEVHNSEEALI--VAEKIGYPVMLKASAGGGGKGIRKVEKPDDL 177 Query: 205 AIAVDLAFE------FDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A + A + + +E+ I R IE +LG+++ GE + Sbjct: 178 VSAFETASSEAKANYGNGAMYIERVIYPARHIEVQILGDEHGHVIHLGERD--CSLQRNN 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTP-ENEVVINEI 316 K ++E AI + +I A AV+A + +G ++ L + E+ Sbjct: 236 QKVLEE-----SPSIAIGKTLRHEIGAAAVRAAEFVGYENAGTIEFLLDEASSNFYFMEM 290 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 NT + P SG+ + ++ Sbjct: 291 NTRVQVEH----PVTEFVSGVDIVKEQICIAAGQPLSVKQEDI 329 >ref|NP_357979.1| (NC_003098) Biotin carboxylase (a subunit of acetyl-CoA carboxylase (ACC) [Streptococcus pneumoniae R6] gb|AAK99189.1| (AE008418) Biotin carboxylase (a subunit of acetyl-CoA carboxylase (ACC) [Streptococcus pneumoniae R6] Length = 455 Score = 212 bits (540), Expect = 5e-54 Identities = 58/343 (16%), Positives = 111/343 (31%), Gaps = 23/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 + +R ++ + I + ++ + Y + H L A + + Sbjct: 1 MFRKILIANRGEIAVRIIRAARELGIATVAVYSTADKEALHTLLADEAVCIGPGKATESY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + L + I P G L E+ M + F+G DK Sbjct: 61 LNINAVLSAAVLTEAEAIHPGF-GFLSENSKFATMCEEVGIKFIGPSGHVMDMMGDKINA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + + AG+ + P N V K+G P+ +K + G G+ KV + Sbjct: 120 RAQMIKAGVPVIPGSDGEVHNSEEALI--VAEKIGYPVMLKASAGGGGKGIRKVEKPDDL 177 Query: 205 AIAVDLAFE------FDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A + A + + +E+ I R IE +LG+++ GE + Sbjct: 178 VSAFETASSEAKANYGNGAMYIERVIYPARHIEVQILGDEHGHVIHLGERD--CSLQRNN 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTP-ENEVVINEI 316 K ++E AI + +I A AV+A + +G ++ L E+ Sbjct: 236 QKVLEE-----SPSIAIGKTLRHEIGAAAVRAAEFVGYENAGTIEFLLDEASRNFYFMEM 290 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 NT + P SG+ + ++ Sbjct: 291 NTRVQVEH----PVTEFVSGVDIVKEQICIAAGQPLSVKQEDI 329 >pir||S71009 biotin carboxylase protein A2 - Saccharopolyspora erythraea emb|CAA63311.1| (X92557) biotin carboxylase and biotin carboxyl carrier protein [Saccharopolyspora erythraea] Length = 591 Score = 212 bits (539), Expect = 6e-54 Identities = 57/332 (17%), Positives = 104/332 (31%), Gaps = 22/332 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV-PGKHE 84 I + +R ++ + I V + Y D + L A L + Sbjct: 9 AIKKVLVANRGEIAVRVIRACRDVGVGSVAVYAEPDVDAVFVRLADEAFGLGGSTAAESY 68 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + D + P +G L E+ + A L +VG A DK Sbjct: 69 LDIGKVIDAAQRSGADAVHPG-YGFLSENADFAQAVLDAGLVWVGPSPEAIRVLGDKVTA 127 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 +R+ + G + P + GLP+ +K A G G+ S E+ Sbjct: 128 RRIALEVGAPLVPGT--EEPASGADEVVAFAEEHGLPVAIKAAFGGGGRGLKVARSLEEI 185 Query: 205 AIAVD------LAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + A + VE+ + R +E VL + + G Sbjct: 186 PGLFESAVREAEAAFGRGECFVERYLDRPRHVEAQVLADRHGGVVVVGTRD--CSLQRRH 243 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E ++ E ++I A + G AG V+ + + + E+N Sbjct: 244 QKLVEE-----APAPFLSEEQRERIHTAAREICARAGYAGAGTVEFLVGADGTISFLEVN 298 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 T + P + +GL R+ Sbjct: 299 TRLQVEH----PVSEETTGLDLVVEQLRIAAG 326 >gb|AAD37851.1|AF126429_1 (AF126429) JadJ [Streptomyces venezuelae] Length = 584 Score = 211 bits (537), Expect = 9e-54 Identities = 48/342 (14%), Positives = 101/342 (29%), Gaps = 22/342 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ-VPGKHEHQL 87 + +R ++ + + + Y D H+ A +L P + Sbjct: 3 KVLIANRGEIAVRVARACRDAGIGSVAVYAEPDRDALHVRAADEAFALGGDTPATSYLDM 62 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 D + P +G L E+ + A L ++G A DK + + Sbjct: 63 AKVLQAAADSGADAVHPG-YGFLSENAEFAQAVLDAGLTWIGPPPQAIRDLGDKVAARHI 121 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + AG + + GLP+ +K A G G+ + E+ Sbjct: 122 AQRAGAPLVAGT--PDPVSGADEVVAFAEEHGLPIAIKAAFGGGGRGLKVARTLEEVPEL 179 Query: 208 VDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 D A + VE+ + R +E L + + K Sbjct: 180 YDSAVREAVAAFGRGECFVERYLDKPRHVETQCLADQHGNVVVVSTRD--CSLQRRHQKL 237 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E ++ N ++ A + + G G V+ + + + E+NT Sbjct: 238 VEE-----APAPFLSEAQNAELYAASKAILKEAGYVGAGTVEFLVGTDGTISFLEVNTRL 292 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALKT 362 + P + +G+ + R+ + + Sbjct: 293 QVEH----PVTEEVTGIDLVREMFRIADGEELGYGDPEIRGH 330 >prf||2009329A urea amidolyase [Pichia jadinii] Length = 1830 Score = 211 bits (537), Expect = 9e-54 Identities = 53/355 (14%), Positives = 106/355 (28%), Gaps = 32/355 (9%) Query: 23 SAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ-VPG 81 S+K + +R ++ + + + + + Y H+ A L Sbjct: 616 SSKPFKSVLVANRGEIAVRIMRTLKKLGIQSIAIYSEPDQYSQHVLDADVAIPLNGTSAA 675 Query: 82 KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDK 141 + + + I P +G L E+ + + FVG + K Sbjct: 676 ETYINIEKVIKAAKDSKAEAIIPG-YGFLSENAEFADICEKEGIVFVGPTGDSIRKLGLK 734 Query: 142 DVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL--------PLFVKPANQGSSV 193 + + + A + + P L SKLGL + +K G + Sbjct: 735 HSAREIAQKANVPLVPGSGLIS---DIDEAIAFASKLGLSNDPETSVKVMLKSTAGGGGI 791 Query: 194 GVSKVTSEEQYAIAVD------LAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGE 246 G+ KV + A + A+ D V +E+ + R +E + G+ A GE Sbjct: 792 GLQKVDLLDDLPKAFETVKHQGQAYFGDAGVFLERFVEDARHVEVQMFGDGFGNAIAVGE 851 Query: 247 IVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFL- 305 + K I+E + +R A Q ++ V+ Sbjct: 852 RD--CSLQRRNQKIIEE-----TPAPNLPESTRQAMRKAAEQLGGSMNYKCAGTVEFIYE 904 Query: 306 TPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 +E E+N + P +GL + + ++ + Sbjct: 905 EKRDEFFFLEVNARLQVEH----PITESVTGLDLVEWMLKIAANQAPDFKSQTIE 955 >emb|CAC22142.1| (AL512902) putative acyl-CoA carboxylase complex A subunit (fragment) [Streptomyces coelicolor] Length = 492 Score = 211 bits (537), Expect = 1e-53 Identities = 47/335 (14%), Positives = 102/335 (30%), Gaps = 22/335 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ-VPGKHEHQL 87 + +R ++ + ++ + Y D H+ A +L P + Sbjct: 3 KVLIANRGEIAVRVARACRDAGIASVAVYADPDRDALHVRAADEAFALGGDTPATSYLDI 62 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 D I P +G L E+ + A L ++G A DK + + Sbjct: 63 AKVLKAARESGADAIHPG-YGFLSENAEFAQAVLDAGLIWIGPPPHAIRDLGDKVAARHI 121 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + AG + + GLP+ +K A G G+ + E+ Sbjct: 122 AQRAGAPLVAGT--PDPVSGADEVVAFAKEHGLPIAIKAAFGGGGRGLKVARTLEEVPEL 179 Query: 208 VDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 D A + VE+ + R +E L + + K Sbjct: 180 YDSAVREAVAAFGRGECFVERYLDKPRHVETQCLADTHGNVVVVSTRD--CSLQRRHQKL 237 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E ++ +++ + + + G G V+ + + + E+NT Sbjct: 238 VEE-----APAPFLSEAQTEQLYSSSKAILKEAGYVGAGTVEFLVGMDGTISFLEVNTRL 292 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 + P + +G+ + R+ + + Sbjct: 293 QVEH----PVTEEVAGIDLVREMFRIADGEELGYD 323 >pir||S71006 biotin carboxylase protein A1 - Saccharopolyspora erythraea emb|CAA63308.1| (X92556) biotin carboxylase and biotin carboxyl carrier protein [Saccharopolyspora erythraea] Length = 597 Score = 210 bits (535), Expect = 1e-53 Identities = 56/329 (17%), Positives = 103/329 (31%), Gaps = 22/329 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV-PGKHEHQL 87 + +R ++ + I V + Y D + L A L + + Sbjct: 18 KVLVANRGEIAVRVIRACRDVGVGSVAVYAEPDVDAVFVRLADEAFGLGGSTAAESYLDI 77 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + D + P +G L E+ + A L +VG A DK +R+ Sbjct: 78 GKVIDAAQRSGADAVHPG-YGFLSENADFAQAVLDAGLVWVGPSPEAIRVLGDKVTARRI 136 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + G + P + GLP+ +K A G G+ S E+ Sbjct: 137 ALEVGAPLVPGT--EEPASGADEVVAFAEEHGLPVAIKAAFGGGGRGLKVARSLEEIPGL 194 Query: 208 VD------LAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 + A + VE+ + R +E VL + + G K Sbjct: 195 FESAVREAEAAFGRGECFVERYLDRPRHVEAQVLADRHGGVVVVGTRD--CSLQRRHQKL 252 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E ++ E ++I A + G AG V+ + + + E+NT Sbjct: 253 VEE-----APAPFLSEEQRERIHTAAREICARAGYAGAGTVEFLVGADGTISFLEVNTRL 307 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIEL 349 + P + +GL R+ Sbjct: 308 QVEH----PVSEETTGLDLVVEQLRIAAG 332 >emb|CAC21629.1| (AL512667) putative acyl-CoA carboxylase complex A subunit [Streptomyces coelicolor] Length = 590 Score = 210 bits (535), Expect = 2e-53 Identities = 47/335 (14%), Positives = 102/335 (30%), Gaps = 22/335 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ-VPGKHEHQL 87 + +R ++ + ++ + Y D H+ A +L P + Sbjct: 3 KVLIANRGEIAVRVARACRDAGIASVAVYADPDRDALHVRAADEAFALGGDTPATSYLDI 62 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 D I P +G L E+ + A L ++G A DK + + Sbjct: 63 AKVLKAARESGADAIHPG-YGFLSENAEFAQAVLDAGLIWIGPPPHAIRDLGDKVAARHI 121 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + AG + + GLP+ +K A G G+ + E+ Sbjct: 122 AQRAGAPLVAGT--PDPVSGADEVVAFAKEHGLPIAIKAAFGGGGRGLKVARTLEEVPEL 179 Query: 208 VDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 D A + VE+ + R +E L + + K Sbjct: 180 YDSAVREAVAAFGRGECFVERYLDKPRHVETQCLADTHGNVVVVSTRD--CSLQRRHQKL 237 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E ++ +++ + + + G G V+ + + + E+NT Sbjct: 238 VEE-----APAPFLSEAQTEQLYSSSKAILKEAGYVGAGTVEFLVGMDGTISFLEVNTRL 292 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 + P + +G+ + R+ + + Sbjct: 293 QVEH----PVTEEVAGIDLVREMFRIADGEELGYD 323 >ref|NP_249185.1| (NC_002516) probable acyl-CoA carboxylase subunit [Pseudomonas aeruginosa] pir||A83585 probable acyl-CoA carboxylase subunit PA0494 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG03883.1|AE004486_12 (AE004486) probable acyl-CoA carboxylase subunit [Pseudomonas aeruginosa] Length = 458 Score = 210 bits (535), Expect = 2e-53 Identities = 56/341 (16%), Positives = 104/341 (30%), Gaps = 24/341 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKHEHQL 87 + +R ++ + I + + D L + + + Sbjct: 7 KLLVANRGEIAVRIIRAAQALGIPTVAVCSEADRDSLAARLADEVRLIGPARADRSYLDI 66 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 D I P +G L E+ + ++ A L FVG + DK +R Sbjct: 67 EAILMAARETGADSIHPG-YGFLSENPAFAEAVQAAGLVFVGPEAQTIRRMGDKAEARRT 125 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 AG+ + P + + ++G PL VK + G G+ ++ Sbjct: 126 AMAAGVPVVPGSPGELGD--LDAALACAEEVGYPLLVKASAGGGGRGIRIAHDADELRRE 183 Query: 208 V------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A V +E+ I + R IE +LG+ +A E K Sbjct: 184 FPIAQREAQAAFGSPAVYLERFIRQARHIEVQILGDGE-RAVHLFER--ECSLQRRRQKV 240 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTP-ENEVVINEINTL 319 +E AA+ + AV+ Q+LG G ++ E E+NT Sbjct: 241 FEE-----APSAALDGAQRQALCESAVRLAQSLGYRGAGTLEYLFDAHSGEFFFIEMNTR 295 Query: 320 PGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + P +G+ + R+ ++ Sbjct: 296 IQVEH----PVSEMVTGIDLVQAMLRIAAGEALPWRQEDIR 332 >ref|NP_225100.1| (NC_000922) Muramate-Ala Ligase & D-Ala-D-Ala Ligase [Chlamydophila pneumoniae CWL029] ref|NP_300962.1| (NC_002491) muramate-Ala ligase/D-Ala-D-Ala ligase [Chlamydophila pneumoniae J138] ref|NP_445498.1| (NC_002179) UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase [Chlamydophila pneumoniae AR39] sp|Q9Z701|MUDD_CHLPN MURC/DDL BIFUNCTIONAL ENZYME [INCLUDES: UDP-N-ACETYLMURAMATE--ALANINE LIGASE (UDP-N-ACETYLMURAMOYL-L-ALANINE SYNTHETASE); D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE)] pir||D72022 UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase CP0961 [imported] - Chlamydophila pneumoniae (strains CWL029 and AR39) gb|AAD19043.1| (AE001670) Muramate-Ala Ligase & D-Ala-D-Ala Ligase [Chlamydophila pneumoniae CWL029] gb|AAF38741.1| (AE002254) UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase [Chlamydophila pneumoniae AR39] dbj|BAA99113.1| (AP002548) muramate-Ala ligase/D-Ala-D-Ala ligase [Chlamydophila pneumoniae J138] Length = 809 Score = 210 bits (534), Expect = 2e-53 Identities = 100/368 (27%), Positives = 165/368 (44%), Gaps = 28/368 (7%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +KL +G+V GGKS EH++SL SA+++ I +DV I++QG W Sbjct: 450 KKLSIGLVCGGKSCEHDISLLSAQHVSKYISPEFYDVSYFIINRQGLWRTGK-------- 501 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 + + G A VD +FP++HG GEDG++QG Sbjct: 502 ---------DFPHLIEETQGDSPLSSEIASALAK---VDCLFPVLHGPFGEDGTIQGFFE 549 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT---RANRHNISFAEVESKL 178 + P+ G + +A MDK +TKR+ G+ + P+ L + + Sbjct: 550 ILGKPYAGPSLSLAATAMDKLLTKRIASAVGVPVVPYQPLNLCFWKRNPELCIQNLIETF 609 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQ-GIKGREIECAVLGND 237 P+ VK A+ GSS+G+ V +E+ + AF +D V VE+ + REIE + +G+ Sbjct: 610 SFPMIVKTAHLGSSIGIFLVRDKEELQEKISEAFLYDTDVFVEESRLGSREIEVSCIGHS 669 Query: 238 NPQASTCG--EIVLTSDFYAYDTKYI--DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 + G E S F Y KY D AK+ ++ E D +R +A + Y+ + Sbjct: 670 SSWYCMAGPNERCGASGFIDYQEKYGFDGIDCAKISFDLQLSQESLDCVRELAERVYRAM 729 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G AR+D FL E ++E+N +PG T S + + + +G ++ I AL + Sbjct: 730 QGKGSARIDFFLDEEGNYWLSEVNPIPGMTAASPFLQAFVHAGWTQEQIVDHFIIDALHK 789 Query: 354 HAADNALK 361 ++ Sbjct: 790 FDKQQTIE 797 >ref|NP_372130.1| (NC_002758) acetyl-CoA carboxylase [Staphylococcus aureus subsp. aureus Mu50] ref|NP_374719.1| (NC_002745) acetyl-CoA carboxylase (biotin carboxylase subunit), accC homolog [Staphylococcus aureus subsp. aureus N315] dbj|BAB42698.1| (AP003134) ORFID:SA1434~acetyl-CoA carboxylase (biotin carboxylase subunit), accC homolog [Staphylococcus aureus subsp. aureus N315] dbj|BAB57768.1| (AP003362) acetyl-CoA carboxylase [Staphylococcus aureus subsp. aureus Mu50] Length = 453 Score = 209 bits (532), Expect = 3e-53 Identities = 54/342 (15%), Positives = 111/342 (31%), Gaps = 23/342 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKH-EH 85 ++ + +R ++ + I ++ + + Y + H+ L A + + Sbjct: 1 MLRCLIANRGEIAVRIIRACREYGIETVAVYAKGDEQSLHVHLADQAICIGEANALDSYL 60 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + + + + I P +G L E + + F+G DK + Sbjct: 61 NIDRIISAAQITGANAIHPG-YGFLSESTKFAQTVEEQGIAFIGPTKKTMEMMGDKITAR 119 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 + + AG+ + P A H + +G P+ +K A+ G G+ V E Sbjct: 120 QTVHHAGVPVIPGS--NGAVNHVSEIENLAKDIGYPVVIKAASGGGGKGIRIVKKAEDLE 177 Query: 206 IAVDLA------FEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A A + D +V VE I + +E V+G+ GE + Sbjct: 178 KAFKEAKSEGKKYFDDDRVYVEAFIPVAKHVEVQVMGDGQDNYVHLGERD--CSVQRKNQ 235 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K I+E AA+ E +I AV+ + ++ +T + E+N Sbjct: 236 KLIEE-----SPCAALTEERRQQICNDAVKVARAANYRSAGTIEFLVT-DTAHYFIEMNA 289 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + + + L+E + + Sbjct: 290 RIQVEHTVTEMRAER----DLVAAQLYLLEHNHLPFSQSDIQ 327 >gb|AAA53140.1| (U08469) 3-methylcrotonyl-CoA carboxylase, biotin-carrier domain [Glycine max] Length = 674 Score = 209 bits (532), Expect = 4e-53 Identities = 51/318 (16%), Positives = 102/318 (32%), Gaps = 23/318 (7%) Query: 52 SDASNYLLNADDPAHIALRPSATSLAQVPGK-HEHQLIDAQNGQPLPTVDVIFPIVHGTL 110 + Y D H+A A + P + + I P +G L Sbjct: 1 QTVAVYSDADRDSLHVATADEAIRIGPPPARLSYLNGASIVDAAIRSGAQAIHPG-YGFL 59 Query: 111 GEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS 170 E + + L F+G A DK +KR++ AG+ + P ++ Sbjct: 60 SESADFAKLCEESGLTFIGPPASAIRDMGDKSASKRIMGAAGVPLVPGYHGY--DQDIEK 117 Query: 171 FAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV------DLAFEFDHKVIVEQGI 224 ++G P+ +KP + G G+ V + +++ + A + +++E+ I Sbjct: 118 MKLEADRIGYPVLIKPTHGGGGKGMRIVHTPDEFVESFLAAQREAAASFGVNTILLEKYI 177 Query: 225 -KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIR 283 + R IE + G+ + E K I+E I+ + ++ Sbjct: 178 TRPRHIEVQIFGDKHGNVLHLYERD--CSVQRRHQKIIEE-----APAPNISADFRAQLG 230 Query: 284 AIAVQAYQTLGCAGMARVDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDL 342 AV A + + V+ + +E E+NT + P G + Sbjct: 231 VAAVSAAKAVNYYNAGTVEFIVDTVSDEFYFMEMNTRLQVEH----PVTEMIVGQDLVEW 286 Query: 343 ITRLIELALERHAADNAL 360 + + Sbjct: 287 QILVANGEALPLSQSQVP 304 >pir||T42206 probable acyl-CoA carboxylase complex A chain - Streptomyces coelicolor gb|AAD28554.1|AF113604_1 (AF113604) putative acyl-CoA carboxylase complex A subunit [Streptomyces coelicolor A3(2)] Length = 590 Score = 209 bits (531), Expect = 5e-53 Identities = 46/335 (13%), Positives = 102/335 (29%), Gaps = 22/335 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ-VPGKHEHQL 87 + +R ++ + ++ + Y D H+ A +L P + Sbjct: 3 KVLIANRGEIAVRVARACRDAGIASVAVYADPDRDALHVRAADEAFALGGDTPATSYLDI 62 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 D I P +G L E+ + A L ++G A +K + + Sbjct: 63 AKVLKAARESGADAIHPG-YGFLSENADFAQAVLDAGLIWIGPPPHAIRDRGEKVAARHI 121 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + AG + + GLP+ +K A G G+ + E+ Sbjct: 122 AQRAGAPLVAGT--PDPVSGADEVVAFAKEHGLPIAIKAAFGGGGRGLKVARTLEEVPEL 179 Query: 208 VDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 D A + VE+ + R +E L + + K Sbjct: 180 YDSAVREAVAAFGRGECFVERYLDKPRHVETQCLADTHGNVVVVSTRD--CSLQRRHQKL 237 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E ++ +++ + + + G G V+ + + + E+NT Sbjct: 238 VEE-----APAPFLSEAQTEQLYSSSKAILKEAGYVGAGTVEFLVGMDGTISFLEVNTRL 292 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 + P + +G+ + R+ + + Sbjct: 293 QVEH----PVTEEVAGIDLVREMFRIADGEELGYD 323 >gb|AAG30191.1| (AF293442) biotin carboxylase [Streptomyces sp. R1128] Length = 461 Score = 208 bits (529), Expect = 7e-53 Identities = 53/343 (15%), Positives = 104/343 (29%), Gaps = 23/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HE 84 + +R ++ L + + + A + A + P + Sbjct: 1 MFEKVLIANRGEIALRVAATCRELGIRTVVVHSDADRHSAAVRFADEAVCVGPAPPRASY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 V+ + P +G L ED + +G + +K Sbjct: 61 LNAAAVLQAAVQTGVEAVHPG-YGFLSEDPDFAEACEDEGITLIGPPAEVMSRLGNKASA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + ++ AGL + P ++R + +G P+ VK A G G+S V S + + Sbjct: 120 RSIMSQAGLPLLPGSLDPLSDR---EAHALADTIGYPVIVKAAAGGGGRGMSVVHSSDDF 176 Query: 205 AI------AVDLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A LA D +V VE+ + R +E VL + GE Sbjct: 177 PDTFRRTQATALAVFGDGRVYVERYLPEARHVEIQVLADRYGNVVHLGERD--CSVQRRH 234 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E + + ++ AV + +G G + L P+ E+N Sbjct: 235 QKLVEE-----TPGPRLPDGLAARMGEAAVAGARAVGYVGAGTFEFLLAPDGTFSFMEVN 289 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + P +G+ + ++ Sbjct: 290 CRIQVEH----PVTEMVTGIDLVREQILVAAGRPLTVRQEDIR 328 >ref|NP_269768.1| (NC_002737) putative acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus pyogenes] [Streptococcus pyogenes M1 GAS] gb|AAK34489.1| (AE006603) putative acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus pyogenes M1 GAS] Length = 454 Score = 208 bits (529), Expect = 8e-53 Identities = 57/346 (16%), Positives = 114/346 (32%), Gaps = 23/346 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 + +R ++ + I + +S + Y + H L A + + Sbjct: 1 MFKKILIANRGEIAVRIIRAARELGISTVAVYSEADKEALHTILADEAICIGPARSKESY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + I P G L E+ M N+ F+G DK Sbjct: 61 LNMNSVLSAAIVTGAQAIHPGF-GFLSENSKFATMCEEMNIKFIGPSASVMDKMGDKINA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + + AG+ + P N + +K+G P+ +K + G G+ KV +E Sbjct: 120 RSEMIKAGVPVIPGSDGEVYNA--QEALAIANKIGYPVMLKASAGGGGKGIRKVETEADL 177 Query: 205 AIAVDLA------FEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A + A + + +E+ I R IE +LG+ GE + Sbjct: 178 EAAFNAASQEALGAFGNGAMYLEKVIYPARHIEVQILGDAYGNIIHLGERD--CSLQRNN 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENE-VVINEI 316 K ++E AI + ++ AV+A + + ++ L ++E E+ Sbjct: 236 QKVLEE-----SPSIAIGNTLRHEMGQAAVRAAEAVAYENAGTIEFLLDEDSEKFYFMEM 290 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALKT 362 NT + P +G+ ++ ++ T Sbjct: 291 NTRIQVEH----PVTEFVTGVDIVKEQIKIAAGQPLAINQEDITIT 332 >pir||T42202 probable acyl-CoA carboxylase complex A chain - Streptomyces coelicolor gb|AAD28553.1|AF113603_1 (AF113603) putative acyl-CoA carboxylase complex A subunit [Streptomyces coelicolor A3(2)] Length = 590 Score = 207 bits (528), Expect = 1e-52 Identities = 46/335 (13%), Positives = 102/335 (29%), Gaps = 22/335 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ-VPGKHEHQL 87 + +R ++ + ++ + Y D H+ A +L P + Sbjct: 3 KVLIANRGEIAVRVARACRDAGIASVAVYADPDRDALHVRAADEAFALGGDTPATSYLDI 62 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 D I P +G L E+ + A L ++G A +K + + Sbjct: 63 AKVLKAARESGADAIHPG-YGFLSENAEFAQAVLDAGLIWIGPPPHAIRDRGEKVAARHI 121 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + AG + + GLP+ +K A G G+ + E+ Sbjct: 122 AQRAGAPLVAGT--PDPVSGADEVVAFAKEHGLPIAIKAAFGGGGRGLKVARTLEEVPEL 179 Query: 208 VDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 D A + VE+ + R +E L + + K Sbjct: 180 YDSAVREAVAAFGRGECFVERYLDKPRHVETQCLADTHGNVVVVSTRD--CSLQRRHQKL 237 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E ++ +++ + + + G G V+ + + + E+NT Sbjct: 238 VEE-----APAPFLSEAQTEQLYSSSKAILKEAGYGGAGTVEFLVGMDGTIFFLEVNTRL 292 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 + P + +G+ + R+ + + Sbjct: 293 QVEH----PVTEEVAGIDLVREMFRIADGEELGYD 323 >ref|NP_356380.1| (NC_003063) AGR_L_1177p [Agrobacterium tumefaciens] [Agrobacterium tumefaciens str. C58 (Cereon)] ref|NP_534751.1| (NC_003305) acetyl-CoA carboxylase, biotin carboxylase [Agrobacterium tumefaciens str. C58 (U. Washington)] gb|AAK89165.1| (AE008257) AGR_L_1177p [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAL45067.1| (AE009356) acetyl-CoA carboxylase, biotin carboxylase [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 464 Score = 207 bits (526), Expect = 2e-52 Identities = 52/344 (15%), Positives = 103/344 (29%), Gaps = 22/344 (6%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-H 83 + + +R ++ + + + +++ S + Sbjct: 14 RRFDTVLIANRGEIAARIQRACHELGLKTVAICSEADRGASYVQTADSFLCIGPSAAGKS 73 Query: 84 EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 L + I P +G L E+ + + A L F+G + A DK Sbjct: 74 YLNKDAILLAARLTSSGAIHPG-YGFLSENTAFSDAVEKAGLVFIGPGASSIATMGDKIA 132 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 KR + A + P + + + ++G P+ VK A G G+ V Sbjct: 133 AKRAMIAAAVPCVPGPDTALPDDP-AAVESIAQEIGYPVIVKAAGGGGGRGMRVVPDAGS 191 Query: 204 YAIAV------DLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 A+ + +E+ ++ R IE VL + + A G Sbjct: 192 LHEAIPTTREEARQAFGSPALYMEKFLQHPRHIEIQVLCDTHGHAVWLGHRD--CSMQRR 249 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEI 316 K ++E I+P++ + V+A Q +G G+ + E+ Sbjct: 250 HQKVVEE-----APAPGISPDVIRSVGQACVEACQQIGYRGVGTFEFLY-ENGAFYFIEM 303 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 NT + P SG+ R + + Sbjct: 304 NTRLQVEH----PVTEMTSGIDIVQAQIRAAQGEELVLRQQDVK 343 >ref|NP_522501.1| (NC_003296) PUTATIVE BIOTIN CARBOXYLASE PROTEIN [Ralstonia solanacearum] emb|CAD18091.1| (AL646081) PUTATIVE BIOTIN CARBOXYLASE PROTEIN [Ralstonia solanacearum] Length = 455 Score = 206 bits (523), Expect = 3e-52 Identities = 55/347 (15%), Positives = 99/347 (27%), Gaps = 32/347 (9%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV-PGKHE 84 + +R ++ L + + Y D ++ A + P Sbjct: 1 MFDTVLIANRGEIALRIQRACRGLGLRTVAVYSEADRDAVYVRQADQALCIGPASPTSSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + I P +G L E+ + A L F+G DK Sbjct: 61 LNQAALLAAARVSGAQAIHPG-YGFLSENAGFVARVTDAGLTFIGPSADCIRTMGDKVSA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVT----- 199 KR +R+AG+ P + + +G P+ VK A G G+ V Sbjct: 120 KRAMREAGVPCVPGPDTSLPEDP-AEVLAIAHGIGFPVIVKAAGGGGGRGMRVVHEASAL 178 Query: 200 ------SEEQYAIAVDLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSD 252 + E+ A + +V +E+ + R +E VL + A G Sbjct: 179 ADALALTREEARRA-----FGNPEVYIEKFLTHPRHVEIQVLADRYGHAVWLGSRD--CS 231 Query: 253 FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVV 312 K I+E I + ++ A + +G G+ + Sbjct: 232 LQRRHQKVIEE-----APAPGIDASLIAEVGERCAAACRQIGYCGVGTFEFLY-ENGAFY 285 Query: 313 INEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 E+NT + P SG+ R+ + Sbjct: 286 FIEMNTRLQVEH----PVTEMTSGIDIVQQQIRVARGEPLTLRQGDI 328 >gb|AAB40890.1| (U35023) acyl coenzyme A carboxylase [Corynebacterium glutamicum] Length = 591 Score = 206 bits (523), Expect = 4e-52 Identities = 48/333 (14%), Positives = 106/333 (31%), Gaps = 22/333 (6%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ-VPGKH 83 + I + +R ++ + + + Y D ++ A +L + Sbjct: 6 RKITKVLVANRGEIAIRVFRAARDEGIGSVAVYAEPDADAPFVSYADEAFALGGQTSAES 65 Query: 84 EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + + D I P +G L E+ + L ++G + + DK Sbjct: 66 YLVIDKIIDAARKSGADAIHPG-YGFLAENADFAEAVINEGLIWIGPSPESIRSLGDKVT 124 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 + + A +AP + + GLP+ +K A G G+ E+ Sbjct: 125 ARHIADTAKAPMAPGTKEPVKDAAE--VVAFAEEFGLPIAIKAAFGGGGRGMKVAYKMEE 182 Query: 204 YAIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 A + A + VE+ + R +E V+ + + G Sbjct: 183 VADLFESATREATAAFGRGECFVERYLDKARHVEAQVIADKHGNVVVAGTRD--CSLQRR 240 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEI 316 K ++E + + +++ + A + G G V+ + + + E+ Sbjct: 241 FQKLVEE-----APAPFLTDDQRERLHSSAKAICKEAGYYGAGTVEYLVGSDGLISFLEV 295 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 NT + P + +G+ + R+ E Sbjct: 296 NTRLQVEH----PVTEETTGIDLVREMFRIAEG 324 >ref|NP_266825.1| (NC_002662) pyruvate carboxylase (6.4.1.1) [Lactococcus lactis subsp. lactis] gb|AAK04767.1|AE006300_2 (AE006300) pyruvate carboxylase (6.4.1.1) [Lactococcus lactis subsp. lactis] Length = 1137 Score = 206 bits (523), Expect = 4e-52 Identities = 53/338 (15%), Positives = 109/338 (31%), Gaps = 26/338 (7%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSL--AQVPGKHE 84 + + +R ++ + + +S + Y + H + + + P Sbjct: 1 MKKLLVANRGEIAVRVFRACNELGLSTVAVYAREDEYSVHRFKADESYLIGQGKKPIDAY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D D I P +G L E+ +R A L FVG ++ DK Sbjct: 61 LDIDDIIRVALESGADAIHPG-YGLLSENLEFATKVRAAGLVFVGPELHHLDIFGDKIKA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K +A + P T E G P+ +K A G G+ +++ + Sbjct: 120 KAAADEAKVPGIPG---TNGAVDIDGALEFAKTYGYPVMIKAALGGGGRGMRVASNDAEM 176 Query: 205 AIAVDLA------FEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A ++ VE+ I + IE +LG+ + E + Sbjct: 177 HDGYARAKSEAIGAFGSGEIYVEKYIENPKHIEVQILGDSHGNIIHLHERD--CSVQRRN 234 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+ + ++ + ++I AV+ + +G V+ + +++ E+N Sbjct: 235 QKVIE-----IAPAVGLSLDFRNEICEAAVKLCKNVGYVNAGTVEFLV-KDDKFYFIEVN 288 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 + +G+ LI + H Sbjct: 289 PRVQVEHT----ITELITGVDIVQAQI-LIAQGKDLHR 321 >ref|NP_252890.1| (NC_002516) D-alanine-D-alanine ligase A [Pseudomonas aeruginosa] pir||E83121 D-alanine-D-alanine ligase A PA4201 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG07588.1|AE004836_7 (AE004836) D-alanine-D-alanine ligase A [Pseudomonas aeruginosa] Length = 346 Score = 204 bits (518), Expect = 2e-51 Identities = 108/354 (30%), Positives = 176/354 (49%), Gaps = 18/354 (5%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +KL+V ++FGG S E +VS+ S ++ A+ + V+ + G + L Sbjct: 4 DKLKVAVLFGGSSEERDVSIASGAQVIQALRSAGHQVLAVD-TASGLLGAEEERRLL--- 59 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 + P + SLA + + + L VDV F +HG GEDG+LQ +L Sbjct: 60 -ASKVKEVPPDSDSLAIIRSGKQS----LLSAGELAGVDVFFLALHGGTGEDGTLQALLD 114 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 + GS LASA MDKDV KRL AG+ A ++ + EV +LG P Sbjct: 115 AGGFAYTGSGHLASAMAMDKDVAKRLFLAAGVETASWLMAPASEE------EVREQLGFP 168 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 L VKP +QGS+VG+S V S+ + A++LA + +V++E+ + GRE+ VL + Sbjct: 169 LVVKPNSQGSTVGLSIVHSQAELQPAIELAGRYGDEVMLERFVAGREVTVGVLDDQALPV 228 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 + + + Y+ KY +V PA + P I + + +A++ ++ L +G +R Sbjct: 229 GEIL--LGGQEVFDYEHKYQAGAVREV-FPADLPPAIAAEAQRLALKVHRALKLSGYSRT 285 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 D L + + E+NTLPG T S+ P+ A+G+G+ +L R+ L +ER Sbjct: 286 DFRLDEQGRLWCLEVNTLPGMTATSLLPQAAAAAGIGFAELCERICRLGIERCK 339 >ref|NP_420971.1| (NC_002696) acetyl/propionyl-CoA carboxylase, alpha subunit [Caulobacter crescentus] gb|AAK24139.1| (AE005888) acetyl/propionyl-CoA carboxylase, alpha subunit [Caulobacter crescentus] Length = 654 Score = 203 bits (516), Expect = 3e-51 Identities = 59/348 (16%), Positives = 111/348 (30%), Gaps = 27/348 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 + + +R ++ I + V + Y + + +A + P + Sbjct: 1 MLSSVLIANRGEIARRIIRTARELGVRTIAVYSEADANAPFVMEADAAILIGPAPAKESY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + I P +G L E+ + A L ++G A A KD Sbjct: 61 LDPRKILAAARQMGAEAIHPG-YGFLSENAEFAQSVIDAGLVWIGPPPSAIRAMGLKDAA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K ++ AG+ P ++ +K+G P+ +K G G+ KV E + Sbjct: 120 KAVMIKAGVPTTPGYLG--EDQSVERLTVEAAKIGYPVLIKAVAGGGGKGMRKVERAEDF 177 Query: 205 AIAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A+ A D +V++E+ + + R IE V G+ + E Sbjct: 178 EAALGSCRREASAAFGDDRVLLEKYVTRPRHIEVQVFGDSHGNVVHLFERD--CSLQRRH 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE-----NEVV 312 K I+E + + + A AV+A Q + G V+ + + Sbjct: 236 QKVIEE-----APAPGMDEATREAVCAAAVKAAQAVNYVGAGTVEFIADASEGLRADRIW 290 Query: 313 INEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 E+NT + P +G + R+ D Sbjct: 291 FMEMNTRLQVEH----PVTEMVTGQDLVEWQLRVASGEPLPLEQDEIT 334 >ref|NP_232019.1| (NC_002505) carbamoyl-phosphate synthase, large subunit [Vibrio cholerae] pir||D82083 carbamoyl-phosphate synthase, large chain VC2389 [imported] - Vibrio cholerae (group O1 strain N16961) gb|AAF95532.1| (AE004309) carbamoyl-phosphate synthase, large subunit [Vibrio cholerae] Length = 1076 Score = 202 bits (515), Expect = 3e-51 Identities = 58/357 (16%), Positives = 125/357 (34%), Gaps = 52/357 (14%) Query: 2 EKLRVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 +K ++ ++ G G+ E + A A+ + ++ +++ + + D S Sbjct: 557 DKDKIMVLGGGPNRIGQGIEFDYCCVHA---ALALREDGYETIMVNCNPETVSTDYDTS- 612 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + LA V + +I GQ L Sbjct: 613 ------DRLYFEPVTLEDVLAIVRVEKPKGVIVQYGGQTPLK-----------------L 649 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L A +P +G+ A D++ ++ ++ GL T+T E Sbjct: 650 ARALEAAGVPVIGTSPDAIDRAEDRERFQQAVQRLGLKQPDNATVT----AIEQAIEKSR 705 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGI-KGREIECAV 233 ++G PL V+P+ + V E+ + A + V++++ + E++ Sbjct: 706 EIGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDDATEVDVDA 765 Query: 234 LGNDNPQAS-TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + + E + + ++ D A + ++ EI DK+R + Sbjct: 766 ICDGERVVIGGIMEHIEQAGVHS-------GDSACSLPAYTLSQEIQDKMREQVEKLAFE 818 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 LG G+ + + +NEV + E+N T P + +A+G + R++ Sbjct: 819 LGVRGLMNIQFAV-KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAARVMVG 870 Score = 148 bits (374), Expect = 8e-35 Identities = 45/372 (12%), Positives = 113/372 (30%), Gaps = 52/372 (13%) Query: 6 VGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 + I+ G++ E + S A A+ + + V+L+ + Sbjct: 10 ILILGAGPIVIGQACEFDYSGAQA---CKALREEGYRVILVNSNPATIMTD--------- 57 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ--- 117 + + + D I P + G + +L Sbjct: 58 ------PEMADATY-------IEPIHWEVVRKIIEKERPDAILPTMGGQTALNCALALEK 104 Query: 118 -GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 G+L + +G+ A D+ + ++ GL + +V Sbjct: 105 HGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPR----ADTAKSMEEAYKVLD 160 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKG-REIECAV 233 +G P ++P+ G + E++ + ++++++ + G +E E V Sbjct: 161 MVGFPCIIRPSFTMGGSGGGIAYNREEFEEICTRGLDLSPTNELLIDESLIGWKEYEMEV 220 Query: 234 LGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 + + N I + + + D V + + +R ++ + + Sbjct: 221 VRDKNDNCIIVCAI----ENFDPMGIHT-GDSITVAPAQTLTDKEYQIMRNASLAVLREI 275 Query: 294 GC-AGMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 G G + V + + +VI E+N ++ +A+G + +L Sbjct: 276 GVETGGSNVQFGINPKDGRMVIIEMNPRVSRSSA----LASKATGFPIAKVAAKLAVGFT 331 Query: 352 ERHAADNALKTT 363 ++ Sbjct: 332 LDELMNDITGGA 343 >ref|NP_253100.1| (NC_002516) D-alanine--D-alanine ligase [Pseudomonas aeruginosa] pir||C83094 D-alanine--D-alanine ligase PA4410 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAF26456.1| (U19797) D-alanine:D-alanine ligase B [Pseudomonas aeruginosa] gb|AAG07798.1|AE004856_9 (AE004856) D-alanine--D-alanine ligase [Pseudomonas aeruginosa] Length = 319 Score = 202 bits (515), Expect = 3e-51 Identities = 103/344 (29%), Positives = 154/344 (43%), Gaps = 51/344 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 RV ++FGGKSAE EVSL+S ++ ++ + D + + + + + Sbjct: 20 RVAVLFGGKSAEREVSLKSGAMVLQSLLAAGVDAFGIDVGEDLLQRLVE----------- 68 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 +D F I+HG GEDGS+QG+L A Sbjct: 69 --------------------------------EKIDRAFIILHGRGGEDGSMQGLLECAG 96 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ GS VLASA MDK TKR+ GL + L + E +LG PL V Sbjct: 97 IPYTGSGVLASALAMDKLRTKRVWLSLGLPTPDYAVLASEDD----CREAAQRLGFPLIV 152 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KPA++GSS+G++KV ++ A A +D +V+VEQ I G E A L Q Sbjct: 153 KPAHEGSSIGMAKVGGLDELIAAWREAARYDSQVLVEQWISGPEFTVATLR---GQVLPA 209 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 + FY YD KY+ D VP + +++ + +A LG G R DV Sbjct: 210 IRLGTPHTFYDYDAKYLASDTRY-QVPCGLDEAKERELKELTARACDALGIQGWGRADVM 268 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 E + E+NT PG T+ S+ P +A+GL + L+ ++ Sbjct: 269 QDAEGRFWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILA 312 >gb|AAK97387.1|AF363615_1 (AF363615) D-alanine:D-alanine ligase 2 [Enterococcus gallinarum] Length = 343 Score = 202 bits (515), Expect = 4e-51 Identities = 91/354 (25%), Positives = 166/354 (46%), Gaps = 16/354 (4%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 + + ++ GG S E +VSL S I A+++ +LL + + +++ + ++ Sbjct: 1 MNIVVLAGGLSHERDVSLSSGGQIAMALEERGHRALLLDLYQGNNEKTFESAYSIQKQEE 60 Query: 64 PAHIALRPSATSLAQV---PGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + + ++ LI + D F +HG +GE+G LQ Sbjct: 61 NPYDYFVVENEPDIEKLIQKNSNQKNLIGKNVVELCLNADFCFIALHGGIGENGKLQAFF 120 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + + + GS S MDKD+ K+L++ + + + S Sbjct: 121 DIYGIRYSGSHYKGSLLAMDKDIAKQLMKLNDIPTPKWQLWEQGQEVYYS---------T 171 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P VKP + GSS+GV V ++EQ+ A+ A +++ KV++EQ I+GRE VLG+ Sbjct: 172 PCVVKPIDNGSSIGVEIVENKEQFFKALKKAEKYNSKVMIEQKIEGREFSVGVLGD---N 228 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 EI+ FY Y+ KY ++ PA I+ ++ ++ + V + LG + +R Sbjct: 229 VLPAIEIIPQQGFYNYENKYQKGATEEIT-PADISSDLATRLSEMTVLVNKVLGLSIYSR 287 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 VD +T E ++ E N+LPG T S+ P+ +A G+ +++L ++EL+LE Sbjct: 288 VDYIVTKELDIYCIEANSLPGMTPTSLLPQEAEAIGISFSELCETIVELSLESW 341 >sp|Q9TTS3|COA1_BOVIN ACETYL-COA CARBOXYLASE 1 (ACC-ALPHA) [INCLUDES: BIOTIN CARBOXYLASE ] emb|CAB56826.1| (AJ132890) acetyl-CoA-carboxylase [Bos taurus] Length = 2346 Score = 201 bits (511), Expect = 1e-50 Identities = 48/383 (12%), Positives = 116/383 (29%), Gaps = 49/383 (12%) Query: 10 FGGKSAEHEVSLQS----AKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 FGG +V + + A + +I + ++ + ++ ++ V L + Sbjct: 112 FGGNKVIEKVLIANNGIAAVKCMRSIRRWSYE--MFRNERAIRFVVMVTPEDLKANAE-- 167 Query: 66 HIALRPSATSLAQVP-GKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 +I + + P + + + V ++ G E+ L +L Sbjct: 168 YIKMADHYVPVPGGPNNNNYANVELILDIAKRIPVQAVWAG-WGHASENPKLPELLLKNG 226 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFI----------------TLTRANRHN 168 + F+G A A DK + + + AG+ P+ L Sbjct: 227 IAFMGPPSQAMWALGDKIASSIVAQTAGIPTLPWSGSGLCVDWHENDFSKRILNVPQELY 286 Query: 169 I--------SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV---DLAFEFDHK 217 + ++G P+ +K + G G+ KV + + + Sbjct: 287 EKGYVKDVDDGLKAAEEVGYPVMIKASEGGGGKGIRKVNNADDFPNLFRQVQAEVPGSPI 346 Query: 218 VIVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPE 277 ++ + R +E +L + A + K I+E A P Sbjct: 347 FVMRLAKQSRHLEVQILADQYGNAISLFGRD--CSVQRRHQKIIEE-----APAAIATPA 399 Query: 278 INDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGL 337 + + + AV+ + +G V+ + + E+N + P + + Sbjct: 400 VFEHMEQCAVKLARMVGYVSAGTVEYLYSQDGSFYFLELNPRLQVEH----PCTEMVADV 455 Query: 338 GYTDLITRLIELALERHAADNAL 360 ++ + + + + Sbjct: 456 NLPAAQLQI-AMGIPLYRIKDIR 477 >sp|Q28559|COA1_SHEEP ACETYL-COA CARBOXYLASE 1 (ACC-ALPHA) [INCLUDES: BIOTIN CARBOXYLASE ] emb|CAA56352.1| (X80045) acetyl-CoA carboxylase [Ovis aries] Length = 2346 Score = 201 bits (510), Expect = 1e-50 Identities = 48/383 (12%), Positives = 116/383 (29%), Gaps = 49/383 (12%) Query: 10 FGGKSAEHEVSLQS----AKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 FGG +V + + A + +I + ++ + ++ ++ V L + Sbjct: 112 FGGNKVIEKVLIANNGIAAVKCMRSIRRWSYE--MFRNERAIRFVVMVTPEDLKANAE-- 167 Query: 66 HIALRPSATSLAQVP-GKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 +I + + P + + + V ++ G E+ L +L Sbjct: 168 YIKMADHYVPVPGGPNNNNYANVELILDIARRIPVQAVWAG-WGHASENPKLPELLLKNG 226 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFI----------------TLTRANRHN 168 + F+G A A DK + + + AG+ P+ L Sbjct: 227 IAFMGPPSQAMWALGDKIASSIVAQTAGIPTLPWSGSGLCVDWHENDFSKRILNVPQELY 286 Query: 169 I--------SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV---DLAFEFDHK 217 + ++G P+ +K + G G+ KV + + + Sbjct: 287 EKGYVKDVDDGLKAAEEVGYPVMIKASEGGGGKGIRKVNNADDFPNLFRQVQAEVPGSPI 346 Query: 218 VIVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPE 277 ++ + R +E +L + A + K I+E A P Sbjct: 347 FVMRLAKQSRHLEVQILADQYGNAISLFGRD--CSVQRRHQKIIEE-----APAAIATPA 399 Query: 278 INDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGL 337 + + + AV+ + +G V+ + + E+N + P + + Sbjct: 400 VFEHMEQCAVKLARMVGYVSAGTVEYLYSQDGSFYFLELNPRLQVEH----PCTEMVADV 455 Query: 338 GYTDLITRLIELALERHAADNAL 360 ++ + + + + Sbjct: 456 NLPAAQLQI-AMGIPLYRIKDIR 477 >gb|AAG40564.1|AF062308_2 (AF062308) acetyl-CoA carboxylase 2 [Arabidopsis thaliana] Length = 2375 Score = 201 bits (510), Expect = 1e-50 Identities = 55/379 (14%), Positives = 109/379 (28%), Gaps = 43/379 (11%) Query: 11 GGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALR 70 GGK H S+ A N + A+ R V + G D + Sbjct: 154 GGKRPIH--SILVATNGMAAVKFIR-SVRTWAYETFGSEKAVKLVAMATPEDMRINAEHI 210 Query: 71 PSATSLAQVP----GKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLP 126 A +VP + + + VD ++P G E+ L L+ + Sbjct: 211 RIADQFVEVPGGTNNNNYANVQLIVEMAEVTRVDAVWPG-WGHASENPELPDALKEKGII 269 Query: 127 FVGSDVLASAACMDKDVTKRLLRDAGLNIAPF-----------ITLTRANR--------H 167 F+G + A DK + + + A + P+ +T Sbjct: 270 FLGPPADSMIALGDKIGSSLIAQAADVPTLPWSGSHVKIPPGRSLVTVPEEIYKKACVYT 329 Query: 168 NISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLA---FEFDHKVIVEQGI 224 +G P +K + G G+ KV ++++ I++ Sbjct: 330 TEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVAS 389 Query: 225 KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRA 284 + R +E +L + + K I+E V E K+ Sbjct: 390 QSRHLEAQLLCDQYGNVAALHSRD--CSVQRRHQKIIEEGPITVAP-----QETIKKLEQ 442 Query: 285 IAVQAYQTLGCAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLI 343 A + +++ G A V+ + + E E+N + P + + Sbjct: 443 AARRLAKSVNYVGAATVEYLYSMDTGEYYFLELNPRLQVEH----PVTEWIAEVNLPAAQ 498 Query: 344 TRLIELALERHAADNALKT 362 + + + + Sbjct: 499 VAVG-MGIPLWQIPEIRRF 516 >sp|P78992|PYC_PICPA PYRUVATE CARBOXYLASE (PYRUVIC CARBOXYLASE) (PCB) emb|CAA71993.1| (Y11106) pyruvate carboxylase [Pichia pastoris] Length = 1189 Score = 201 bits (510), Expect = 1e-50 Identities = 47/332 (14%), Positives = 96/332 (28%), Gaps = 26/332 (7%) Query: 20 SLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ- 78 S + +R ++ + + ++ + Y H A + + Sbjct: 16 SSLLGTM-NKILVANRGEIPIRIFRTAHELSMNTVAIYSHEDRLSMHRLKADEAYVIGER 74 Query: 79 ---VPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLAS 135 P + + + V++I P +G E+ + + +VG Sbjct: 75 GQYSPVQAYLAIDEIIKIAVKHNVNMIHPG-YGFCSENSEFARKVEENGILWVGPSDTVI 133 Query: 136 AACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGV 195 A DK + L A + P + + G P+ +K A G G+ Sbjct: 134 DAVGDKVSARNLAYAANVPTVPGTPGPIED--VAQATAFVEEYGYPVIIKAAFGGGGRGM 191 Query: 196 SKVTSEEQYAIAVDLA------FEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIV 248 V + A A + V +E+ + + IE +L ++ E Sbjct: 192 RVVREGDDIEDAFLRASSEAKTAFGNGTVFIERFLDKPKHIEVQLLADNYGNVIHLFERD 251 Query: 249 LTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE 308 K AK + E+ + I AV+ +T + + + Sbjct: 252 --CSVQRRHQKVARNCSAK-----TLPVEVRNAILNDAVKLAKTANYRNAGTAEFLVDSQ 304 Query: 309 NEVVINEINTLPGFTNISMYPKLWQASGLGYT 340 N EIN + + +G+ Sbjct: 305 NRHYFIEINPRIQVEHT----ITEEITGVDIV 332 >sp|P11029|COAC_CHICK ACETYL-COA CARBOXYLASE (ACC) [INCLUDES: BIOTIN CARBOXYLASE ] pir||A29924 acetyl-CoA carboxylase (EC 6.4.1.2), hepatic - chicken gb|AAA48701.1| (J03541) acetyl-CoA carboxylase [Gallus gallus] Length = 2324 Score = 200 bits (509), Expect = 2e-50 Identities = 48/383 (12%), Positives = 115/383 (29%), Gaps = 49/383 (12%) Query: 10 FGGKSAEHEVSLQS----AKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 FGG +V + + A + +I + ++ + ++ ++ V L + Sbjct: 112 FGGNRVIEKVLIANNGIAAVKCMRSIRRWSYE--MFRNERAIRFVVMVTPEDLKANAE-- 167 Query: 66 HIALRPSATSLAQVP-GKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 +I + + P + + + V ++ G E+ L +L Sbjct: 168 YIKMADHYVPVPGGPNNNNYANVELILDIAKRIPVQAVWAG-WGHASENPKLPELLHKNG 226 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPF----------------ITLTRANRHN 168 + F+G A A DK + + + AG+ P+ L Sbjct: 227 IAFMGPPSQAMWALGDKIASSIVAQTAGIPTLPWNGSGLRVDWQENDLQKRILNVPQELY 286 Query: 169 I--------SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV---DLAFEFDHK 217 ++G P+ +K + G G+ KV + + + Sbjct: 287 EKGYVKDADDGLRAAEEVGYPVMIKASEGGGGKGIRKVNNADDFPNLFRQVQAEVPGSPI 346 Query: 218 VIVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPE 277 ++ + R +E +L + A + K I+E A + Sbjct: 347 FVMRLAKQSRHLEVQILADQYGNAISLFGRD--CSVQRRHQKIIEEAPASIATSV----- 399 Query: 278 INDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGL 337 + + + AV+ + +G V+ + + E+N + P + + Sbjct: 400 VFEHMEQCAVKLAKMVGYVSAGTVEYLYSQDGSFYFLELNPRLQVEH----PCTEMVADV 455 Query: 338 GYTDLITRLIELALERHAADNAL 360 ++ + + H + Sbjct: 456 NLPAAQLQI-AMGIPLHRIKDIR 477 >ref|NP_174850.1| (NC_003070) acetyl-CoA carboxylase, putative [Arabidopsis thaliana] gb|AAG51252.1|AC025781_4 (AC025781) acetyl-CoA carboxylase, putative; 9984-22276 [Arabidopsis thaliana] Length = 2359 Score = 200 bits (508), Expect = 2e-50 Identities = 55/379 (14%), Positives = 109/379 (28%), Gaps = 43/379 (11%) Query: 11 GGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALR 70 GGK H S+ A N + A+ R V + G D + Sbjct: 134 GGKRPIH--SILVATNGMAAVKFIR-SVRTWAYETFGSEKAVKLVAMATPEDMRINAEHI 190 Query: 71 PSATSLAQVP----GKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLP 126 A +VP + + + VD ++P G E+ L L+ + Sbjct: 191 RIADQFVEVPGGTNNNNYANVQLIVEMAEVTRVDAVWPG-WGHASENPELPDALKEKGII 249 Query: 127 FVGSDVLASAACMDKDVTKRLLRDAGLNIAPF-----------ITLTRANR--------H 167 F+G + A DK + + + A + P+ +T Sbjct: 250 FLGPPADSMIALGDKIGSSLIAQAADVPTLPWSGSHVKIPPGRSLVTVPEEIYKKACVYT 309 Query: 168 NISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLA---FEFDHKVIVEQGI 224 +G P +K + G G+ KV ++++ I++ Sbjct: 310 TEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVAS 369 Query: 225 KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRA 284 + R +E +L + + K I+E V E K+ Sbjct: 370 QSRHLEAQLLCDQYGNVAALHSRD--CSVQRRHQKIIEEGPITVAP-----QETIKKLEQ 422 Query: 285 IAVQAYQTLGCAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLI 343 A + +++ G A V+ + + E E+N + P + + Sbjct: 423 AARRLAKSVNYVGAATVEYLYSMDTGEYYFLELNPRLQVEH----PVTEWIAEVNLPAAQ 478 Query: 344 TRLIELALERHAADNALKT 362 + + + + Sbjct: 479 VAVG-MGIPLWQIPEIRRF 496 >ref|NP_459135.1| (NC_003197) D-alanine-D-alanine ligase B, affects cell division [Salmonella typhimurium LT2] gb|AAL19094.1| (AE008700) D-alanine-D-alanine ligase B, affects cell division [Salmonella typhimurium LT2] Length = 306 Score = 200 bits (508), Expect = 2e-50 Identities = 103/349 (29%), Positives = 165/349 (46%), Gaps = 50/349 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 ++ ++ GG SAE +VSL S ++ + + + + Sbjct: 4 KIAVLLGGTSAERDVSLNSGAAVLAGLREGGINAHPVDPQ-------------------- 43 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 +F +HG GEDG+LQGML + Sbjct: 44 -----------------------EVDVAQLKAMGFQKVFIALHGRGGEDGTLQGMLELLG 80 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHN---ISFAEVESKLGLP 181 LP+ GS V+ASA MDK +K L + AGL +AP++ LTRA S LGLP Sbjct: 81 LPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSEEQKARISALGLP 140 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 L VKP+ +GSSVG++KV E A+ LAF+ D ++++E+ + G E A++G + Sbjct: 141 LIVKPSREGSSVGMTKVVEENALQGALSLAFQHDDEILIEKWLCGPEFTVAIVGEE---I 197 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 I FY Y+ KY+ D + PA + ++++ +QA++ LGC G R+ Sbjct: 198 LPSIRIQPAGTFYDYEAKYLS-DETQYFCPAGLDASQEAALQSLVLQAWKALGCTGWGRI 256 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 DV L + + + E NT PG T+ S+ P + +G+ ++ L+ R++ELA Sbjct: 257 DVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 >ref|NP_356721.1| (NC_003063) AGR_L_1864p [Agrobacterium tumefaciens] [Agrobacterium tumefaciens str. C58 (Cereon)] ref|NP_534405.1| (NC_003305) biotin carboxylase [Agrobacterium tumefaciens str. C58 (U. Washington)] gb|AAK89506.1| (AE008292) AGR_L_1864p [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAL44721.1| (AE009322) biotin carboxylase [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 576 Score = 200 bits (508), Expect = 2e-50 Identities = 57/335 (17%), Positives = 109/335 (32%), Gaps = 22/335 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSL-AQVPGKHEH 85 + + +R ++ + I + + + Y D + L A +L P + Sbjct: 1 MKKVLIANRGEIAVRIIRACRDYGLQSVAVYADPDQDALFVRLADEAYALEGVRPAETYL 60 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + D + P +G L E + A L ++G D A DK + + Sbjct: 61 DISKLIAIAKRAGADAVHPG-YGFLSERAEFAQAVIDAGLIWIGPDPDVIEALGDKVMAR 119 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 R+ G + ++ + GLP+ +K A+ G G+ E+ A Sbjct: 120 RIATGVGAPLVAGSDGPVSSAAE--VTAFAEQHGLPVAIKAAHGGGGRGLKVAWKMEEIA 177 Query: 206 IAVDLA------FEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 + A + +E+ + R IE V+ + + G + Sbjct: 178 ELYESAVREATVAFGRGECFLERFLDRPRHIEAQVIADKHGNVLVLGTRD--CSLQRRNQ 235 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K I+E ++ E KI A G +G V+ L + + E+NT Sbjct: 236 KLIEE-----APAPFLSDEQRQKIHDAAKAICAAAGYSGAGTVEFLLGVDGTISFLEVNT 290 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 + P + +G+ R+ E R Sbjct: 291 RLQVEH----PVTEETTGIDLVIEQFRIAEGHKLR 321 >gb|AAG30411.1|AF262949_2 (AF262949) pyruvate carboxylase [Mycobacterium smegmatis] Length = 1127 Score = 199 bits (507), Expect = 3e-50 Identities = 56/333 (16%), Positives = 110/333 (32%), Gaps = 24/333 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV--PGKH 83 I + +R ++ + + ++ + Y + H + + +V P + Sbjct: 1 MISKVLVANRGEIAIRAFRAAYEMGIATVAVYPYEDRNSLHRLKADESYQIGEVGHPVRA 60 Query: 84 EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + + D ++P +G L E+ L A + FVG +K Sbjct: 61 YLSVDEIIRVAKHSGADAVYPG-YGFLSENPDLAAKCAEAGITFVGPSAEVLQLTGNKAR 119 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 R AGL + ++ + + + + PLFVK + G G+ +VT E Sbjct: 120 AIAAARAAGLPV---LSSSEPSSSVDELMAAAADMEFPLFVKAVSGGGGRGMRRVTDRES 176 Query: 204 YAIAVDLA------FEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 A A++ A D V +EQ + R IE +L + E Sbjct: 177 LAEAIEAASREAESAFGDASVYLEQAVLNPRHIEVQILADGAGNVMHLFERD--CSVQRR 234 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEI 316 K ++ + ++ E+ +I A AV + +G + V+ L V E Sbjct: 235 HQKVVE-----LAPAPNLSDELRQQICADAVAFARQIGYSCAGTVEFLLDERGHHVFIEC 289 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 N + + + + R+ Sbjct: 290 NPRIQVEHTV----TEEITDVDLVSSQLRIAAG 318 >ref|NP_343814.1| (NC_002754) Biotin carboxylase a subunit of propionyl-CoA carboxylase (accC) [Sulfolobus solfataricus] gb|AAK42604.1| (AE006845) Biotin carboxylase a subunit of propionyl-CoA carboxylase (accC) [Sulfolobus solfataricus] Length = 510 Score = 199 bits (507), Expect = 3e-50 Identities = 55/339 (16%), Positives = 117/339 (34%), Gaps = 23/339 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHEHQL 87 + +R ++ + + + + + Y H+ A + P + + Sbjct: 6 KVLVANRGEIAIRVMKAVKEMGMKAVAVYSDADKYAPHVKYADEAYWIGPPPALESYLNI 65 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + D + P +G L E+ S + A + F+G DK K + Sbjct: 66 ERIIDAAEKAHADAVHPG-YGFLSENASFVEAVEKAGMVFIGPSASVMNRIKDKLEGKMI 124 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 R AG+ +P N ++ ++G P+ +K A G+ VG+ KV + + A A Sbjct: 125 ARKAGVPTSPGPLTPIEN--VDEALKIAGEIGYPIMLKAAGGGAGVGIIKVDNPSELAEA 182 Query: 208 VD------LAFEFDHKVIVEQ-GIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 + + ++ +E+ IK + IE ++G+ E + K Sbjct: 183 FERSKRLAYSAFGRAEIYIEKAAIKPKHIETQLIGDKYGNYVVAFER--ECTIQRRNQKL 240 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTP-ENEVVINEINTL 319 I+E +I E +I +++ + + + ++ +P E EIN Sbjct: 241 IEE-----APSPSIKEEERKEIIEASIRFGKEINYFTLGTMEFVFSPVTREFYFLEINKR 295 Query: 320 PGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 + +G+ L RL + ++ Sbjct: 296 VQVEHTV----TEFITGIDLVKLQIRLAAGEYLPFSQED 330 >ref|NP_454742.1| (NC_003198) D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica serovar Typhi] emb|CAD01287.1| (AL627265) D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica serovar Typhi] Length = 306 Score = 199 bits (507), Expect = 3e-50 Identities = 104/349 (29%), Positives = 165/349 (46%), Gaps = 50/349 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 ++ ++ GG SAE +VSL S ++ + + D + Sbjct: 4 KIAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQ-------------------- 43 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 +F +HG GEDG+LQGML + Sbjct: 44 -----------------------EVDVAQLKAMGFQKVFIALHGRGGEDGTLQGMLELLG 80 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHN---ISFAEVESKLGLP 181 LP+ GS V+ASA MDK +K L + AGL +AP++ LTRA S LGLP Sbjct: 81 LPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSEEQKARISALGLP 140 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 L VKP+ +GSSVG++KV E A+ LAF+ D ++++E+ + G E A++G + Sbjct: 141 LIVKPSREGSSVGMTKVVEENALQGALSLAFQHDDEILIEKWLCGPEFTVAIVGEE---I 197 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 I FY Y+ KY+ D + PA + ++++ +QA++ LGC G R+ Sbjct: 198 LPSIRIQPAGTFYDYEAKYLS-DETQYFCPAGLEASQEAALQSLVLQAWKALGCTGWGRI 256 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 DV L + + + E NT PG T+ S+ P + +G+ ++ L+ R++ELA Sbjct: 257 DVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 >ref|NP_174849.1| (NC_003070) acetyl-CoA carboxylase, putative [Arabidopsis thaliana] Length = 2247 Score = 199 bits (506), Expect = 3e-50 Identities = 57/378 (15%), Positives = 110/378 (29%), Gaps = 43/378 (11%) Query: 12 GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRP 71 GK H S+ A N + A+ R V + G D + Sbjct: 33 GKRPIH--SILIANNGMAAVKFIR-SVRTWAYETFGTEKAILLVGMATPEDMRINAEHIR 89 Query: 72 SATSLAQVP----GKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPF 127 A +VP + + + VD ++P G E+ L L + F Sbjct: 90 IADQFVEVPGGTNNNNYANVQLIVEMAEVTRVDAVWPG-WGHASENPELPDALDAKGIIF 148 Query: 128 VGSDVLASAACMDKDVTKRLLRDAGLNIAPFI-----------TLTRANR--------HN 168 +G + AA DK + + + A + P+ +T Sbjct: 149 LGPPASSMAALGDKIGSSLIAQAADVPTLPWSGSHVKIPPNSNLVTIPEEIYRQACVYTT 208 Query: 169 ISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLA---FEFDHKVIVEQGIK 225 +G P +K + G G+ KV ++++ I++ + Sbjct: 209 EEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQ 268 Query: 226 GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAI 285 R +E +L + + S K I+E V P E K+ Sbjct: 269 SRHLEVQLLCDKHGNVSALHSRD--CSVQRRHQKIIEEGPITVAPP-----ETVKKLEQA 321 Query: 286 AVQAYQTLGCAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLIT 344 A + +++ G A V+ + + E E+N + P + + Sbjct: 322 ARRLAKSVNYVGAATVEYLYSMDTGEYYFLELNPRLQVEH----PVTEWIAEINLPAAQV 377 Query: 345 RLIELALERHAADNALKT 362 + + + + Sbjct: 378 AVG-MGIPLWQIPEIRRF 394 >dbj|BAA07012.1| (D34630) acetyl-CoA carboxylase [Arabidopsis thaliana] Length = 2254 Score = 199 bits (506), Expect = 3e-50 Identities = 57/378 (15%), Positives = 110/378 (29%), Gaps = 43/378 (11%) Query: 12 GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRP 71 GK H S+ A N + A+ R V + G D + Sbjct: 33 GKRPIH--SILIANNGMAAVKFIR-SVRTWAYETFGTEKAILLVGMATPEDMRINAEHIR 89 Query: 72 SATSLAQVP----GKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPF 127 A +VP + + + VD ++P G E+ L L + F Sbjct: 90 IADQFVEVPGGTNNNNYANVQLIVEMAEVTRVDAVWPG-WGHASENPELPDALDAKGIIF 148 Query: 128 VGSDVLASAACMDKDVTKRLLRDAGLNIAPFI-----------TLTRANR--------HN 168 +G + AA DK + + + A + P+ +T Sbjct: 149 LGPPASSMAALGDKIGSSLIAQAADVPTLPWSGSHVKIPPNSNLVTIPEEIYRQACVYTT 208 Query: 169 ISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLA---FEFDHKVIVEQGIK 225 +G P +K + G G+ KV ++++ I++ + Sbjct: 209 EEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQ 268 Query: 226 GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAI 285 R +E +L + + S K I+E V P E K+ Sbjct: 269 SRHLEVQLLCDKHGNVSALHSRD--CSVQRRHQKIIEEGPITVAPP-----ETVKKLEQA 321 Query: 286 AVQAYQTLGCAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLIT 344 A + +++ G A V+ + + E E+N + P + + Sbjct: 322 ARRLAKSVNYVGAATVEYLYSMDTGEYYFLELNPRLQVEH----PVTEWIAEINLPAAQV 377 Query: 345 RLIELALERHAADNALKT 362 + + + + Sbjct: 378 AVG-MGIPLWQIPEIRRF 394 >gb|AAF18638.2|AC006228_9 (AC006228) F5J5.19 [Arabidopsis thaliana] Length = 2257 Score = 199 bits (506), Expect = 3e-50 Identities = 57/378 (15%), Positives = 110/378 (29%), Gaps = 43/378 (11%) Query: 12 GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRP 71 GK H S+ A N + A+ R V + G D + Sbjct: 33 GKRPIH--SILIANNGMAAVKFIR-SVRTWAYETFGTEKAILLVGMATPEDMRINAEHIR 89 Query: 72 SATSLAQVP----GKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPF 127 A +VP + + + VD ++P G E+ L L + F Sbjct: 90 IADQFVEVPGGTNNNNYANVQLIVEMAEVTRVDAVWPG-WGHASENPELPDALDAKGIIF 148 Query: 128 VGSDVLASAACMDKDVTKRLLRDAGLNIAPFI-----------TLTRANR--------HN 168 +G + AA DK + + + A + P+ +T Sbjct: 149 LGPPASSMAALGDKIGSSLIAQAADVPTLPWSGSHVKIPPNSNLVTIPEEIYRQACVYTT 208 Query: 169 ISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLA---FEFDHKVIVEQGIK 225 +G P +K + G G+ KV ++++ I++ + Sbjct: 209 EEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQ 268 Query: 226 GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAI 285 R +E +L + + S K I+E V P E K+ Sbjct: 269 SRHLEVQLLCDKHGNVSALHSRD--CSVQRRHQKIIEEGPITVAPP-----ETVKKLEQA 321 Query: 286 AVQAYQTLGCAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLIT 344 A + +++ G A V+ + + E E+N + P + + Sbjct: 322 ARRLAKSVNYVGAATVEYLYSMDTGEYYFLELNPRLQVEH----PVTEWIAEINLPAAQV 377 Query: 345 RLIELALERHAADNALKT 362 + + + + Sbjct: 378 AVG-MGIPLWQIPEIRRF 394 >emb|CAB48407.1| (AJ243652) urea amidolyase homologue [Pseudomonas fluorescens] Length = 1213 Score = 199 bits (506), Expect = 4e-50 Identities = 52/339 (15%), Positives = 100/339 (29%), Gaps = 24/339 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA-QVPGKHE 84 + +R + + + V + Y HI A L Sbjct: 1 MFEKILIANRGAIACRILRTLRELEVKGVAVYSQADAASLHIQQADEAYCLGDGAAAGTY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + I P +G L E+ + A++ F+G K Sbjct: 61 LAVDKLLAIAKSSGATAIHPG-YGFLSENAAFAEACEAADIAFIGPTPEQLRVFGLKHTA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + L R G+ + T + ++LG P+ +K G +G+ S Sbjct: 120 RDLARRHGVPLLEG---TELLDSLDAALLAGTQLGYPVMLKSTAGGGGIGMRVCRSATDL 176 Query: 205 AIAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + + + D V +E+ I+ R +E V G+ Q G + Sbjct: 177 SESFEAVKRLGQNNFSDAGVFIEKYIERARHLEVQVFGDGQGQVIALGVRD--CSVQRRN 234 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE-NEVVINEI 316 K ++E + + D++ A A+Q Q + V+ + E+ Sbjct: 235 QKVLEE-----TPAPNLPEGMADELCAAAIQLAQAVNYRSAGTVEFVFDSDAGRFYFLEV 289 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 NT + Q G+ + +L L + Sbjct: 290 NTRLQVEHGV----TEQVWGVDLVRWMVQLAAGDLPPLS 324 >gb|AAL02056.1|AF294805_1 (AF294805) acetyl-coenzyme A carboxylase [Setaria italica] Length = 2321 Score = 199 bits (505), Expect = 4e-50 Identities = 54/379 (14%), Positives = 103/379 (26%), Gaps = 43/379 (11%) Query: 11 GGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALR 70 GGK+ H S+ A N + A R V D G D + Sbjct: 127 GGKTPIH--SILVANNGMAAAKFMR-SVRTWANDTFGSEKAIQLIAMATPEDMRINAEHI 183 Query: 71 PSATSLAQVP----GKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLP 126 A +VP + + V ++P G E+ L L + Sbjct: 184 RIADQFVEVPGGTNNNNYANVQLIVEVAERIGVSAVWPG-WGHASENPELPDALTAKGIV 242 Query: 127 FVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK--------- 177 F+G + A DK + + + AG+ + + + Sbjct: 243 FLGPPAASMNALGDKVGSALIAQAAGVPTLSWSGSHVEVPLECCLDAIPEEMYRKACVTT 302 Query: 178 ----------LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLA---FEFDHKVIVEQGI 224 +G P +K + G G+ KV ++++ I+ Sbjct: 303 TEEAVASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMRLAS 362 Query: 225 KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRA 284 + R +E +L + + K I+E V E + Sbjct: 363 QSRHLEVQLLCDQYGNVAALHSRD--CSVQRRHQKIIEEGPVTVAPR-----ETVKALEQ 415 Query: 285 IAVQAYQTLGCAGMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLI 343 A + + +G G A V+ + E E+N + P + + Sbjct: 416 AARRLAKAVGYVGAATVEYLYSMETGEYYFLELNPRLQVEH----PVTEWIAEVNLPAAQ 471 Query: 344 TRLIELALERHAADNALKT 362 + + + + Sbjct: 472 VAVG-MGIPLWQIPEIRRF 489 >gb|AAC41645.1| (L27074) acetyl-CoA carboxylase [Arabidopsis thaliana] gb|AAG40563.1|AF062308_1 (AF062308) acetyl-CoA carboxylase 1 [Arabidopsis thaliana] prf||2018327A Ac-CoA carboxylase [Arabidopsis thaliana] Length = 2254 Score = 199 bits (505), Expect = 5e-50 Identities = 56/378 (14%), Positives = 110/378 (28%), Gaps = 43/378 (11%) Query: 12 GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRP 71 GK H S+ A N + A+ R V + G D + Sbjct: 33 GKRPIH--SILIANNGMAAVKFIR-SVRTWAYETFGTEKAILLVGMATPEDMRINAEHIR 89 Query: 72 SATSLAQVP----GKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPF 127 A +VP + + + VD ++P G E+ L L + F Sbjct: 90 IADQFVEVPGGTNNNNYANVQLIVEMAEVTRVDAVWPG-WGHASENPELPDALDAKGIIF 148 Query: 128 VGSDVLASAACMDKDVTKRLLRDAGLNIAPFI-----------TLTRANR--------HN 168 +G + AA DK + + + A + P+ +T Sbjct: 149 LGPPASSMAALGDKIGSSLIAQAADVPTLPWSGSHVKIPPNSNLVTIPEEIYRQACVYTT 208 Query: 169 ISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLA---FEFDHKVIVEQGIK 225 +G P +K + G G+ KV ++++ I++ + Sbjct: 209 EEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQ 268 Query: 226 GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAI 285 R +E +L + + S K I+E V P E K+ Sbjct: 269 SRHLEVQLLCDKHGNVSALHSRD--CSVQRRHQKIIEEGPITVAPP-----ETVKKLEQA 321 Query: 286 AVQAYQTLGCAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLIT 344 A + +++ G A ++ + + E E+N + P + + Sbjct: 322 ARRLAKSVNYVGAATIEYLYSMDTGEYYFLELNPRLQVEH----PVTEWIAEINLPAAQV 377 Query: 345 RLIELALERHAADNALKT 362 + + + + Sbjct: 378 AVG-MGIPLWQIPEIRRF 394 >ref|NP_212334.1| (NC_001318) D-alanine--D-alanine ligase (ddlA) [Borrelia burgdorferi] sp|O51218|DDL_BORBU D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||H70124 D-alanine--D-alanine ligase (ddlA) homolog - Lyme disease spirochete gb|AAC66589.1| (AE001130) D-alanine--D-alanine ligase (ddlA) [Borrelia burgdorferi] Length = 356 Score = 198 bits (504), Expect = 5e-50 Identities = 116/357 (32%), Positives = 192/357 (53%), Gaps = 21/357 (5%) Query: 7 GIVFGGKSAEHEVSLQSAKNIVDA-IDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNADDP 64 ++FGG S EHE+S +SA +I A +D +++++ + IDK G W++ D+ + + Sbjct: 1 MLIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPINT 60 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 +P + +DV+FP+VHG GEDG++QG+L+V + Sbjct: 61 D------------VLPIVSLLPGFGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMD 108 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN---RHNISFAEVESKLGLP 181 +P VG+ ++ SA +K K LL+ + + PFI + + V+ LG P Sbjct: 109 IPCVGAGIIGSAISSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEVLGYP 168 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 + VKPA GSS+G++ SE Q + A ++D +++E+ I+ REIEC+++GN+ + Sbjct: 169 VIVKPAVLGSSIGINVAYSENQIESFIKEALKYDLTIVIEKFIEAREIECSIIGNEKMKI 228 Query: 242 STCGEIVLTSD-FYAYDTKY--IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 + GE+V+ FY YD KY I + +PA + I+ A Y+ L GM Sbjct: 229 FSPGEVVVQDFIFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLTYKNLELRGM 288 Query: 299 ARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 ARVD F+ + + +NEINT+PGFT+ISM+ K+ GL + DL+ LI+ A + + Sbjct: 289 ARVDFFVEKKSGTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYAFQSY 345 >pir||S41121 acetyl-CoA carboxylase (EC 6.4.1.2) - human emb|CAA48770.1| (X68968) acetyl-CoA carboxylase [Homo sapiens] prf||2006242A Ac-CoA carboxylase [Homo sapiens] Length = 2339 Score = 198 bits (504), Expect = 5e-50 Identities = 49/383 (12%), Positives = 118/383 (30%), Gaps = 49/383 (12%) Query: 10 FGGKSAEHEVSLQS----AKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 FGG +V + + A + +I + ++ + ++ ++ V L + Sbjct: 112 FGGNKVIEKVLIANNGIAAVKCMRSIRRWSYE--MFRNERAIRFVVMVTPEDLKANAE-- 167 Query: 66 HIALRPSATSLAQVP-GKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 +I + + P + + + V ++ G E+ L +L Sbjct: 168 YIKMADHYVPVPGGPNNNNYANVELILDIAKRIPVQAVWAG-WGHASENPKLPELLLKNG 226 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFI----------------TLTRANRHN 168 + F+G A A DK + + + AG+ P+ L Sbjct: 227 IAFMGPPSQAMWALGDKIASSIVAQTAGIPTLPWSGSGLRVDWQENDFSKRILNVPQELY 286 Query: 169 I--------SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV---DLAFEFDHK 217 + ++G P+ +K + G G+ KV + + + Sbjct: 287 EKGYVKDVDDGLQAAEEVGYPVMIKASEGGGGKGIRKVNNADDFPNLFRQVQAEVPGSPI 346 Query: 218 VIVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPE 277 ++ + R +E +L + A + K I+E A + PA Sbjct: 347 FVMRLAKQSRHLEVQILADQYGNAISLFGRD--CSVQRRHQKIIEEAPATIATPA----- 399 Query: 278 INDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGL 337 + + + AV+ + +G V+ + + E+N + P + + Sbjct: 400 VFEHMEQCAVKLAKMVGYVSAGTVEYLYSQDRSFYFLELNPRLQVEH----PCTEMVADV 455 Query: 338 GYTDLITRLIELALERHAADNAL 360 ++ + + + + Sbjct: 456 NLPAAQLQI-AMGIPLYRIKDIR 477 >pir||T44290 biotin carboxylase (EC 6.3.4.14) [imported] - Sulfolobus metallicus gb|AAB97084.1| (AF042099) biotin carboxylase [Sulfolobus metallicus] Length = 513 Score = 198 bits (504), Expect = 6e-50 Identities = 50/344 (14%), Positives = 111/344 (31%), Gaps = 23/344 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHEH 85 + +R ++ + + + + + + Y H+ A + P + Sbjct: 4 FGKVLVSNRGEIAVSVMKRIKEMGMKAVAVYSEADKYALHVKYADEAYYIGPAPSIESYL 63 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + + D + P +G L E + A + F+G K K Sbjct: 64 NIERIIDAAEKAHADAVHPG-YGFLSERADFAEAVEKAGMTFIGPSSEVMNRVKSKLDGK 122 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 R+ ++AG IAP ++ K+G P+ VK A G +G+++ + +Q Sbjct: 123 RIAKEAGTPIAPGSDGPVG--SLDEALKLTEKIGYPVMVKAAYGGGGIGITRADNPDQLM 180 Query: 206 IAV------DLAFEFDHKVIVEQ-GIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 + +E+ ++ R IE ++G+ E + Sbjct: 181 DIWGRNQRLAKEAFGRPDLYIEKAAVRPRHIETQLIGDKYGTYVVAFER--ECTIQRRNQ 238 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFL-TPENEVVINEIN 317 K I+E A+ E ++ +V+ + +G + ++ ++ E+N Sbjct: 239 KLIEE-----APSPALTWEKREEFIDASVKFGKKIGYFALGTMEFAYSDTTKDLYFLELN 293 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALK 361 + +G+ L RL+ + K Sbjct: 294 KRLQVEHG----ITELVTGIDLVKLQIRLVAGEHMPFTQEELKK 333 >ref|NP_439298.1| (NC_000907) D-alanine--D-alanine ligase (ddlB) [Haemophilus influenzae Rd] sp|P44405|DDL_HAEIN D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||F64185 D-alanine--D-alanine ligase (EC 6.3.2.4) B - Haemophilus influenzae (strain Rd KW20) gb|AAC22795.1| (U32794) D-alanine--D-alanine ligase (ddlB) [Haemophilus influenzae Rd] Length = 306 Score = 197 bits (502), Expect = 1e-49 Identities = 106/351 (30%), Positives = 174/351 (49%), Gaps = 47/351 (13%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 +++ ++ ++ GG SAE EVSL S K +++A+ K ++ + Sbjct: 3 LKQEKIAVLLGGTSAEREVSLNSGKAVLEALLKQGYNAHPIDP----------------- 45 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 E+ + + + F I+HG GEDG++QG+L Sbjct: 46 ----------------------KEYNVANL----KKDGFNRAFNILHGRGGEDGTMQGLL 79 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 LP+ G V+ASA MDK TK L + GL +A +TR + V +KLGL Sbjct: 80 EQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFSELDPQAVVAKLGL 139 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 PL VKP+ +GSSVG++KV + E+ AV+ A +FD+ +++E+ + G E+ VL N Sbjct: 140 PLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKFDNTILIEEWLAGDELTVPVLDNQ--- 196 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 IV +FY Y+ KYI ++ PA + PE + + +AY +GC G +R Sbjct: 197 VLPAIRIVPEGEFYDYEAKYISDNTQYF-CPAGLTPEREQALSTLVKRAYDAVGCRGWSR 255 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 +DV + + E+NT PG T+ S++PK G+ + L+ +++EL+L Sbjct: 256 IDVMCDAKGNFRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILELSL 306 >ref|NP_414634.1| (NC_000913) D-alanine-D-alanine ligase B, affects cell division [Escherichia coli K12] sp|P07862|DDLB_ECOLI D-ALANINE--D-ALANINE LIGASE B (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||CEECDL D-alanine--D-alanine ligase (EC 6.3.2.4) B - Escherichia coli pdb|1IOV| Complex Of D-Ala:d-Ala Ligase With Adp And A Phosphoryl Phosphonate pdb|2DLN| Mol_id: 1; Molecule: D-Alanine--D-Alanine Ligase; Chain: Null; Ec: 6.3.2.4 emb|CAA38869.1| (X55034) D-Ala:D-Ala ligase (Ddl) [Escherichia coli] gb|AAA23672.1| (M14029) ddl cell wall enzyme [Escherichia coli] gb|AAA23815.1| (K02668) D-alanine:D-alanine ligase [Escherichia coli] dbj|BAA01357.1| (D10483) D-alanine-D-alanine ligase [Escherichia coli] gb|AAC73203.1| (AE000118) D-alanine-D-alanine ligase B, affects cell division [Escherichia coli K12] Length = 306 Score = 197 bits (501), Expect = 1e-49 Identities = 106/349 (30%), Positives = 169/349 (48%), Gaps = 50/349 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 ++ ++ GG SAE EVSL S ++ + + D + Sbjct: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDP--------------KEVDVTQ 49 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 +F +HG GEDG+LQGML + Sbjct: 50 L-----------------------------KSMGFQKVFIALHGRGGEDGTLQGMLELMG 80 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL---GLP 181 LP+ GS V+ASA MDK +K L + AGL +AP++ LTRA + +++ GLP Sbjct: 81 LPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLP 140 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 + VKP+ +GSSVG+SKV +E A+ LAF+ D +V++E+ + G E A+LG + Sbjct: 141 VIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE---I 197 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 I + FY Y+ KY+ D + PA + ++A+ ++A+ TLGC G R+ Sbjct: 198 LPSIRIQPSGTFYDYEAKYLS-DETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRI 256 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 DV L + + + E NT PG T+ S+ P + +G+ ++ L+ R++ELA Sbjct: 257 DVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 >ref|NP_207168.1| (NC_000915) biotin carboxylase (accC) [Helicobacter pylori 26695] pir||B64566 biotin carboxylase - Helicobacter pylori (strain 26695) gb|AAD07434.1| (AE000553) biotin carboxylase (accC) [Helicobacter pylori 26695] Length = 458 Score = 197 bits (501), Expect = 1e-49 Identities = 56/336 (16%), Positives = 115/336 (33%), Gaps = 23/336 (6%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKH 83 K + + +R ++ L I + + Y + D ++ + + + Sbjct: 14 KELSRILIANRGEIALRAIQTIQEMGKESIAIYSIADKDAHYLNTASAKVCIGGAKSSES 73 Query: 84 EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + + L D IFP +G L E+ + + +L F+G A DK Sbjct: 74 YLNIPAIISAAELFEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSK 132 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 K ++++AG+ + E+ K+G P+ +K A G G+ V + + Sbjct: 133 AKSVMKEAGMPVIEGSDGLLK--SYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVGDKSK 190 Query: 204 YAIAVDLA------FEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 A D V +E+ I + IE +L + + GE Sbjct: 191 LKNLYLAAETEALSAFGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERD--CSVQRR 248 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE-NEVVINE 315 K I+E + + +++ A++A + +G G + L + E Sbjct: 249 QQKLIEE-----TPAVVLEEGVRERLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFME 303 Query: 316 INTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 +NT + SGL + + ++ + Sbjct: 304 MNTRLQVEHT----ISEMVSGLNLIEWMIKIAQGEK 335 >ref|NP_223728.1| (NC_000921) BIOTIN CARBOXYLASE [Helicobacter pylori J99] pir||G71860 biotin carboxylase - Helicobacter pylori (strain J99) gb|AAD06583.1| (AE001529) BIOTIN CARBOXYLASE [Helicobacter pylori J99] Length = 455 Score = 197 bits (500), Expect = 2e-49 Identities = 57/342 (16%), Positives = 115/342 (32%), Gaps = 24/342 (7%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKH 83 K + + +R ++ L I + + Y + D ++ + + + Sbjct: 11 KELSRILIANRGEIALRAIQTIQEMGKESIAIYSIADKDAHYLNTANAKVCIGGAKSSES 70 Query: 84 EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + + L D IFP +G L E+ + + +L F+G A DK Sbjct: 71 YLNIPAIISAAELFEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKAK 129 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 K ++++AG+ + E+ K+G P+ +K A G G+ V + + Sbjct: 130 AKIVMKEAGMPVIEGSDGLLK--SYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVGDKSK 187 Query: 204 YAIAVDLA------FEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 A D V +E+ I + IE +L + + GE Sbjct: 188 LKNLYLAAETEALSAFGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERD--CSVQRR 245 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE-NEVVINE 315 K I+E + + ++ A++A + +G G + L + E Sbjct: 246 QQKLIEE-----TPAVVLEESVRKRLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFME 300 Query: 316 INTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 +NT + SGL + + ++ E + Sbjct: 301 MNTRLQVEHT----ISEMVSGLNLIEWMIKI-AQGEELPKQE 337 >pir||T02235 acetyl-CoA carboxylase (EC 6.4.1.2) - maize gb|AAA80214.1| (U19183) acetyl-coenzyme A carboxylase [Zea mays] Length = 2325 Score = 197 bits (500), Expect = 2e-49 Identities = 52/379 (13%), Positives = 103/379 (26%), Gaps = 43/379 (11%) Query: 11 GGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALR 70 GGK+ H S+ A N + A R V D G D + Sbjct: 127 GGKTPIH--SILVANNGMAAAKFMR-SVRTWANDTFGSEKAIQLIAMATPEDMRINAEHI 183 Query: 71 PSATSLAQVP----GKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLP 126 A +VP + + V ++P G E+ L L + Sbjct: 184 RIADQFVEVPGGTNNNNYANVQLIVGMAQKLGVSAVWPG-WGHASENPELPDALTAKGIV 242 Query: 127 FVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK--------- 177 F+G + A DK + + + AG+ + + + Sbjct: 243 FLGPPASSMNALGDKVGSALIAQAAGVPTLAWSGSHVEVPLECCLDAIPEEMYRKACVTT 302 Query: 178 ----------LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLA---FEFDHKVIVEQGI 224 +G P +K + G G+ KV ++++ ++ Sbjct: 303 TEEAVASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFVMRLAS 362 Query: 225 KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRA 284 + R +E +L + + K I+E V E + Sbjct: 363 QSRHLEVQLLCDQYGNVAALHSRD--CSVQRRHQKIIEEGPVTVAPR-----ETVKALEQ 415 Query: 285 IAVQAYQTLGCAGMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLI 343 A + + +G G A V+ + + E+N + P + + Sbjct: 416 AARRLAKAVGYVGAATVEYLYSMETGDYYFLELNPRLQVEH----PVTEWIAEVNLPAAQ 471 Query: 344 TRLIELALERHAADNALKT 362 + + + + Sbjct: 472 VAVG-MGIPLWQIPEIRRF 489 Searching..................................................done Results from round 7 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: ref|NP_286119.1| (NC_002655) Z0477 gene product [Escherichia col... 283 1e-75 ref|NP_454975.1| (NC_003198) D-alanine:D-alanine ligase A [Salmo... 283 1e-75 gb|AAK67986.1|AF297332_1 (AF297332) 3-methylcrotonyl-CoA carboxy... 277 1e-73 ref|NP_064551.2| (NM_020166) methylcrotonoyl-Coenzyme A carboxyl... 277 1e-73 dbj|BAA99407.1| (AB029826) 3-methylcrotonyl-CoA carboxylase biot... 277 1e-73 ref|NP_539980.1| (NC_003317) BIOTIN CARBOXYLASE [Brucella melite... 265 4e-70 ref|NP_442228.1| (NC_000911) biotin carboxylase [Synechocystis s... 264 9e-70 gb|AAB88214.1| (U59234) biotin carboxylase [Synechococcus sp. PC... 262 4e-69 gb|AAB17902.2| (U39790) D-alanine:D-alanine ligase [Enterococcus... 261 6e-69 sp|Q47827|DDL_ENTHR D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 261 6e-69 ref|NP_076133.1| (NM_023644) methylcrotonoyl-Coenzyme A carboxyl... 261 7e-69 dbj|BAB25253.1| (AK007782) putative [Mus musculus] 261 8e-69 gb|AAG49141.1|AF215736_1 (AF215736) D-alanine:D-alanine ligase [... 259 3e-68 ref|NP_102052.1| (NC_002678) biotin carboxylase [Mesorhizobium l... 258 7e-68 ref|NP_389369.1| (NC_000964) pyruvate carboxylase [Bacillus subt... 257 1e-67 ref|NP_484982.1| (NC_003272) biotin carboxylase [Nostoc sp. PCC ... 257 1e-67 gb|AAF80469.1|AF163150_1 (AF163150) acetyl-CoA carboxylase [Glyc... 256 2e-67 ref|NP_243491.1| (NC_002570) pyruvate carboxylase [Bacillus halo... 256 2e-67 pir||T07093 acetyl-CoA carboxylase (EC 6.4.1.2) biotin carboxyla... 256 3e-67 pir||T06279 acetyl-CoA carboxylase (EC 6.4.1.2), biotin carboxyl... 256 3e-67 pir||T44813 biotin carboxylase (EC 6.3.4.14) yngH [imported] - B... 253 2e-66 ref|NP_214014.1| (NC_000918) biotin carboxylase [Aquifex aeolicu... 253 2e-66 pir||T02431 acetyl-CoA carboxylase (EC 6.4.1.2), biotin carboxyl... 253 3e-66 ref|NP_372607.1| (NC_002758) D-alanine-D-alanine ligase [Staphyl... 253 3e-66 gb|AAK25989.1|AF360279_1 (AF360279) putative biotin carboxylase ... 252 4e-66 ref|NP_198386.1| (NC_003076) acetyl-CoA carboxylase [Arabidopsis... 252 5e-66 ref|NP_251581.1| (NC_002516) probable biotin carboxylase/biotin ... 252 5e-66 ref|NP_354336.1| (NC_003062) AGR_C_2451p [Agrobacterium tumefaci... 251 6e-66 sp|P25051|VANA_ENTFC VANCOMYCIN/TEICOPLANIN A-TYPE RESISTANCE PR... 251 6e-66 ref|NP_171808.1| (NC_003070) putative 3-methylcrotonyl-CoA carbo... 251 7e-66 emb|CAB61227.1| (Y15704) vana protein [Bacillus circulans] 251 1e-65 ref|NP_241998.1| (NC_002570) biotin carboxylase [Bacillus halodu... 250 1e-65 ref|NP_385425.1| (NC_003047) PROBABLE BIOTIN CARBOXYLASE PROTEIN... 250 1e-65 ref|NP_388337.1| (NC_000964) D-alanyl-D-alanine ligase A [Bacill... 250 1e-65 pdb|1E4E|A Chain A, D-Alanyl-D-Lacate Ligase 249 2e-65 gb|AAF57199.1| (AE003779) CG2118 gene product [Drosophila melano... 249 2e-65 ref|NP_371638.1| (NC_002758) pyruvate carboxylase [Staphylococcu... 249 3e-65 gb|AAF36803.1|AF155139_2 (AF155139) putative D-alanyl-D-alanine ... 249 4e-65 gb|AAG45427.1|AF317651_4 (AF317651) pyruvate carboxylase ATP-bin... 249 4e-65 gb|AAG37026.1|AF277571_3 (AF277571) D-alanine:D-lactate ligase [... 248 5e-65 pdb|1E4E|B Chain B, D-Alanyl-D-Lacate Ligase 248 8e-65 pir||T35363 D-alanine--D-alanine ligase (EC 6.3.2.4) A SC66T3.06... 248 9e-65 dbj|BAA12072.1| (D83706) pyruvate carboxylase [Geobacillus stear... 248 1e-64 sp|Q06893|VANB_ENTFC VANCOMYCIN B-TYPE RESISTANCE PROTEIN VANB (... 247 2e-64 gb|AAF71281.1|AF253562_5 (AF253562) ligase [Enterococcus faecalis] 246 2e-64 ref|NP_266497.1| (NC_002662) D-alanine-D-alanine ligase (EC 6.3.... 246 3e-64 ref|NP_283408.1| (NC_003116) putative acetyl-CoA carboxylase bio... 245 4e-64 emb|CAB09721.1| (Z97025) pyruvate carboxylase [Bacillus subtilis] 245 5e-64 ref|NP_539717.1| (NC_003317) PROPIONYL-COA CARBOXYLASE ALPHA CHA... 245 6e-64 ref|NP_277017.1| (NC_000916) biotin carboxylase [Methanothermoba... 244 7e-64 gb|AAK60339.1| (AY034410) biotin carboxylase [Brassica napus] 244 9e-64 gb|AAF72363.1|AF192329_24 (AF192329) VanB [Enterococcus faecalis] 244 1e-63 ref|NP_274857.1| (NC_003112) acetyl-CoA carboxylase, biotin carb... 243 1e-63 ref|NP_485023.1| (NC_003272) D-alanyl-D-alanine ligase [Nostoc s... 243 2e-63 gb|AAD42184.1|AF130997_5 (AF130997) D-alanine:D-lactate ligase [... 242 4e-63 ref|NP_520908.1| (NC_003295) PROBABLE BIOTIN CARBOXYLASE PROTEIN... 242 4e-63 ref|NP_437988.1| (NC_003078) putative propionyl-CoA carboxylase ... 242 5e-63 ref|NP_389706.1| (NC_000964) similar to biotin carboxylase [Baci... 241 6e-63 ref|NP_248224.1| (NC_000909) biotin carboxylase (accC) [Methanoc... 241 7e-63 emb|CAB64487.1| (AJ243059) D-ala,D-ala ligase [Streptococcus pne... 241 7e-63 emb|CAB64463.1| (AJ243053) D-ala,D-ala ligase [Streptococcus pne... 241 7e-63 ref|NP_359108.1| (NC_003098) D-alanine-D-alanine ligase [Strepto... 241 7e-63 ref|NP_464381.1| (NC_003210) D-alanine--D-alanine ligase [Lister... 241 8e-63 ref|NP_346110.1| (NC_003028) D-alanine--D-alanine ligase [Strept... 241 9e-63 ref|NP_253535.1| (NC_002516) biotin carboxylase [Pseudomonas aer... 241 9e-63 sp|O54631|DDL_STRPN D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 241 1e-62 gb|AAH06915.1|AAH06915 (BC006915) Similar to Propionyl Coenzyme ... 241 1e-62 emb|CAB64459.1| (AJ243052) D-ala,D-ala ligase [Streptococcus pne... 241 1e-62 emb|CAB64475.1| (AJ243056) D-ala,D-ala ligase [Streptococcus pne... 241 1e-62 emb|CAB64471.1| (AJ243055) D-ala,D-ala ligase [Streptococcus pne... 240 1e-62 gb|AAG34685.1|AF310955_1 (AF310955) ligase VanB2 [Enterococcus f... 240 1e-62 pir||T06360 methylcrotonoyl-CoA carboxylase (EC 6.4.1.4) biotin ... 240 2e-62 gb|AAC23582.1| (U82965) D-alanine:D-alanine ligase-related prote... 240 2e-62 emb|CAB05883.1| (Z83305) D-alanine:D-alanine ligase-related prot... 240 2e-62 gb|AAD41882.1|AF153050_3 (AF153050) D-alanine:D-lactate ligase [... 240 2e-62 ref|NP_534077.1| (NC_003305) propionyl-coenzyme A carboxylase, a... 239 2e-62 gb|AAL02364.1| (AY046947) propionyl CoA-carboxylase alpha-subuni... 239 2e-62 ref|NP_269512.1| (NC_002737) putative D-ala,D-ala ligase [Strept... 239 3e-62 ref|NP_357031.1| (NC_003063) AGR_L_580GMp [Agrobacterium tumefac... 238 6e-62 sp|P29753|VANC_ENTGA VANCOMYCIN C-TYPE RESISTANCE PROTEIN VANC (... 238 7e-62 ref|NP_470190.1| (NC_003212) D-alanine--D-alanine ligase [Lister... 237 1e-61 ref|NP_357130.1| (NC_003063) AGR_L_2704p [Agrobacterium tumefaci... 237 1e-61 emb|CAB63849.1| (AJ243051) D-ala,D-ala ligase [Streptococcus pne... 237 1e-61 pir||A34337 propionyl-CoA carboxylase (EC 6.4.1.3) alpha chain p... 237 1e-61 ref|NP_036876.1| (NM_012744) pyruvate carboxylase [Rattus norveg... 237 1e-61 gb|AAG34684.1|AF310954_1 (AF310954) ligase VanB2 [Enterococcus f... 237 1e-61 pir||S68252 pyruvate carboxylase (EC 6.4.1.1) precursor - rat >g... 237 1e-61 ref|NP_294085.1| (NC_001263) D-alanine--D-alanine ligase [Deinoc... 237 1e-61 ref|NP_372050.1| (NC_002758) acetyl-CoA carboxylase [Staphylococ... 237 1e-61 ref|NP_000273.1| (NM_000282) Propionyl-Coenzyme A carboxylase, a... 237 1e-61 gb|AAG34683.1|AF310953_1 (AF310953) ligase VanB2 [Enterococcus f... 236 2e-61 ref|NP_032823.1| (NM_008797) pyruvate decarboxylase [Mus musculu... 236 2e-61 ref|NP_254123.1| (NC_002516) probable biotin carboxylase subunit... 236 3e-61 ref|NP_102581.1| (NC_002678) propionyl-CoA carboxylase alpha cha... 236 3e-61 ref|NP_349497.1| (NC_003030) D-alanine-D-alanine ligase [Clostri... 236 3e-61 ref|NP_104954.1| (NC_002678) pyruvate carboxylase [Mesorhizobium... 236 4e-61 gb|AAB92588.1| (AF038548) pyruvate carboxylase [Corynebacterium ... 235 4e-61 ref|NP_350153.1| (NC_003030) Biotin carboxylase [Clostridium ace... 235 5e-61 ref|NP_000911.1| (NM_000920) pyruvate carboxylase precursor [Hom... 235 6e-61 gb|AAB31500.1| (S72370) pyruvate carboxylase; pyruvate:carbon di... 235 7e-61 sp|P11498|PYC_HUMAN Pyruvate carboxylase, mitochondrial precurso... 234 7e-61 ref|NP_297342.1| (NC_002488) biotin carboxylase subunit of acety... 234 7e-61 gb|AAD51060.1|AF175293_5 (AF175293) D-alanine:D-lactate ligase [... 234 9e-61 emb|CAB87214.1| (AL163641) acetyl/propionyl CoA carboxylase alph... 234 1e-60 ref|NP_300241.1| (NC_002491) biotin carboxylase [Chlamydophila p... 234 1e-60 ref|NP_293843.1| (NC_001263) acetyl-CoA carboxylase, biotin carb... 234 1e-60 gb|AAA88512.1| (M22631) alpha-propionyl-CoA carboxylase (EC 6.4.... 233 2e-60 ref|NP_355659.1| (NC_003062) AGR_C_4940p [Agrobacterium tumefaci... 233 2e-60 gb|AAF09095.1|AF068759_1 (AF068759) pyruvate carboxylase [Lactoc... 233 2e-60 dbj|BAB16297.1| (AB039884) acetyl-CoA carboxylase biotin carboxy... 233 2e-60 emb|CAB64483.1| (AJ243058) D-ala,D-ala ligase [Streptococcus pne... 233 2e-60 sp|P14882|PCCA_RAT PROPIONYL-COA CARBOXYLASE ALPHA CHAIN, MITOCH... 233 2e-60 ref|NP_224391.1| (NC_000922) Biotin Carboxylase [Chlamydophila p... 233 2e-60 gb|AAF32338.1|AF218939_6 (AF218939) acetyl-CoA carboxylase [Baci... 232 3e-60 ref|NP_107983.1| (NC_002678) 3-methylcrotonyl-CoA carboxylase bi... 232 3e-60 emb|CAA70282.1| (Y09061) acetyl-CoA carboxylase, biotin carboxyl... 232 3e-60 gb|AAA60990.1| (L29638) ligase [Enterococcus casseliflavus] 232 5e-60 ref|NP_387384.1| (NC_003047) PROBABLE PYRUVATE CARBOXYLASE PROTE... 231 6e-60 ref|NP_219627.1| (NC_000117) Biotin Carboxylase [Chlamydia trach... 231 8e-60 sp|Q47758|DDL_ENTFA D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 231 8e-60 pir||T39734 pyruvate carboxylase (EC 6.4.1.1) [similarity] - fis... 231 8e-60 ref|NP_220281.1| (NC_000117) UDP-N-acetylmuramate-alanine ligase... 231 1e-59 gb|AAA67356.1| (U12536) 3-methylcrotonyl-CoA carboxylase precurs... 231 1e-59 ref|NP_505977.1| (NM_073576) pyruvate carboxylase [Caenorhabditi... 231 1e-59 dbj|BAA11239.1| (D78170) pyruvate carboxylase [Schizosaccharomyc... 230 1e-59 ref|NP_518386.1| (NC_003295) PROBABLE ACYL-COA CARBOXYLASE ALPHA... 230 1e-59 ref|NP_217017.1| (NC_000962) accA1 [Mycobacterium tuberculosis H... 230 1e-59 gb|AAG37836.1|AF295372_1 (AF295372) pyruvate carboxylase [Danio ... 230 1e-59 ref|NP_243653.1| (NC_002570) acetyl-CoA carboxylase biotin carbo... 230 1e-59 ref|NP_533976.1| (NC_003305) 3-methylcrotonyl-CoA carboxylase al... 230 2e-59 ref|NP_103309.1| (NC_002678) D-alanine-D-alanine ligase A [Mesor... 230 2e-59 gb|AAD34740.1| (AF132152) unknown [Drosophila melanogaster] >gi|... 230 2e-59 ref|NP_470397.1| (NC_003212) highly similar to pyruvate carboxyl... 230 2e-59 ref|NP_539184.1| (NC_003317) PYRUVATE CARBOXYLASE [Brucella meli... 229 2e-59 pir||T43735 pyruvate carboxylase (EC 6.4.1.1) [validated] - yell... 229 2e-59 gb|AAC44388.1| (U51439) pyruvate carboxylase [Rhizobium etli] 229 3e-59 ref|NP_501777.1| (NM_069376) carbomoyl-phosphate carboxylase [Ca... 229 3e-59 ref|NP_214048.1| (NC_000918) pyruvate carboxylase n-terminal dom... 229 3e-59 gb|AAG22289.1| (AE003831) BcDNA:GH06348 gene product [alt 1] [Dr... 229 3e-59 ref|NP_464597.1| (NC_003210) highly similar to pyruvate carboxyl... 229 3e-59 gb|AAC43218.1| (U00457) D-alanine:D-alanine ligase-related prote... 229 4e-59 gb|AAD19835.1| (AF060799) D-alanyl-D-alanine ligase [Amycolatops... 229 4e-59 ref|NP_009767.1| (NC_001134) Urea amidolyase (contains urea carb... 229 4e-59 ref|NP_509293.1| (NM_076892) Propionyl-coA carboxylase alpha cha... 228 6e-59 ref|NP_246028.1| (NC_002663) AccC [Pasteurella multocida] >gi|12... 228 6e-59 ref|NP_407114.1| (NC_003143) biotin carboxylase [Yersinia pestis... 228 6e-59 ref|NP_296778.1| (NC_002620) acetyl-coenzyme A carboxylase, biot... 228 7e-59 ref|NP_009777.1| (NC_001134) converts pyruvate to oxaloacetate; ... 228 7e-59 ref|NP_069058.1| (NC_000917) biotin carboxylase (acc) [Archaeogl... 228 7e-59 ref|NP_229950.1| (NC_002505) acetyl-CoA carboxylase, biotin carb... 227 9e-59 ref|NP_349267.1| (NC_003030) Pyruvate carboxylase, PYKA [Clostri... 227 9e-59 ref|NP_439133.1| (NC_000907) acetyl-CoA carboxylase, biotin carb... 227 1e-58 ref|NP_437243.1| (NC_003078) putative methylcrotonoyl-CoA carbox... 227 1e-58 sp|Q47823|DDL_ENTGA D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 227 2e-58 ref|NP_540842.1| (NC_003317) acetyl-CoA carboxylase alpha chain ... 226 2e-58 ref|NP_390314.1| (NC_000964) acetyl-CoA carboxylase subunit (bio... 226 2e-58 ref|NP_219107.1| (NC_000919) D-alanine--D-alanine ligase (ddlA) ... 226 2e-58 emb|CAA42544.1| (X59890) pyruvate carboxylase [Saccharomyces cer... 226 3e-58 ref|NP_282187.1| (NC_002163) putative pyruvate carboxylase A sub... 226 3e-58 gb|AAC41643.1| (M64926) urea amidolyase [Saccharomyces cerevisiae] 226 3e-58 sp|Q9ZGN0|DDL_MYCSM D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 226 3e-58 sp|P49787|ACCC_BACSU BIOTIN CARBOXYLASE (A SUBUNIT OF ACETYL-COA... 224 7e-58 ref|NP_457756.1| (NC_003198) biotin carboxylase [Salmonella ente... 224 8e-58 ref|NP_337574.1| (NC_002755) D-alanine--D-alanine ligase [Mycoba... 224 8e-58 ref|NP_417722.1| (NC_000913) acetyl CoA carboxylase, biotin carb... 224 1e-57 gb|AAA34843.1| (J03889) pyruvate carboxylase (EC 6.4.1.1) [Sacch... 224 1e-57 ref|NP_302152.1| (NC_002677) D-alanine-D-alanine ligase A [Mycob... 224 1e-57 ref|NP_312155.1| (NC_002695) acetyl CoA carboxylase biotin carbo... 224 1e-57 ref|NP_250702.1| (NC_002516) probable acyl-CoA carboxylase alpha... 224 1e-57 ref|NP_420691.1| (NC_002696) acetyl-CoA carboxylase, biotin carb... 224 1e-57 ref|NP_217497.1| (NC_000962) ddlA [Mycobacterium tuberculosis H3... 224 1e-57 ref|NP_011453.1| (NC_001139) converts pyruvate to oxaloacetate; ... 224 1e-57 ref|NP_289824.1| (NC_002655) acetyl CoA carboxylase, biotin carb... 224 1e-57 gb|AAA23748.1| (M79446) biotin carboxylase [Escherichia coli] 223 2e-57 gb|AAC69197.1| (AF097728) pyruvate carboxylase [Aspergillus terr... 223 2e-57 emb|CAC19838.1| (AJ009972) pyruvate carboxylase [Aspergillus niger] 223 2e-57 ref|NP_047031.1| (NC_001905) PCACA; L549.5 [Leishmania major] >g... 223 2e-57 sp|Q9ZBR9|DDL_STRCO D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 222 3e-57 gb|AAG10491.1|AF279106_53 (AF279106) predicted acetyl-CoA carbox... 222 3e-57 gb|AAD25800.1|AC006550_8 (AC006550) Identical to gb|U12536 3-met... 222 3e-57 ref|NP_106581.1| (NC_002678) 3-methylcrotonyl-CoA carboxylase bi... 222 4e-57 ref|NP_376481.1| (NC_003106) 513aa long hypothetical biotin carb... 222 4e-57 pdb|1DV2|A Chain A, The Structure Of Biotin Carboxylase, Mutant ... 222 6e-57 ref|NP_464882.1| (NC_003210) acetyl-CoA carboxylase subunit (bio... 221 1e-56 ref|NP_360596.1| (NC_003103) propionyl-CoA carboxylase alpha cha... 221 1e-56 ref|NP_420982.1| (NC_002696) propionyl-CoA carboxylase, alpha su... 221 1e-56 ref|NP_470730.1| (NC_003212) acetyl-CoA carboxylase subunit (bio... 220 1e-56 ref|NP_220985.1| (NC_000963) PROPIONYL-COA CARBOXYLASE ALPHA CHA... 220 2e-56 ref|NP_214146.1| (NC_000918) biotin carboxylase [Aquifex aeolicu... 220 2e-56 ref|NP_440997.1| (NC_000911) D-alanine:D-alanine ligase-related ... 220 2e-56 gb|AAD37851.1|AF126429_1 (AF126429) JadJ [Streptomyces venezuelae] 219 2e-56 ref|NP_282436.1| (NC_002163) biotin carboxylase [Campylobacter j... 219 4e-56 ref|NP_296522.1| (NC_002620) UDP-N-acetylmuramate--alanine ligas... 219 4e-56 ref|NP_249185.1| (NC_002516) probable acyl-CoA carboxylase subun... 218 6e-56 emb|CAC22142.1| (AL512902) putative acyl-CoA carboxylase complex... 218 6e-56 gb|AAL27442.1|AF430807_7 (AF430807) VanE [Enterococcus faecalis] 218 7e-56 emb|CAC21629.1| (AL512667) putative acyl-CoA carboxylase complex... 218 8e-56 sp|Q9PLG1|MUDD_CHLMU MURC/DDL BIFUNCTIONAL ENZYME [INCLUDES: UDP... 217 8e-56 pir||S71009 biotin carboxylase protein A2 - Saccharopolyspora er... 217 9e-56 pir||T06565 acetyl-CoA carboxylase (EC 6.4.1.2) biotin carboxyla... 216 2e-55 gb|AAA53140.1| (U08469) 3-methylcrotonyl-CoA carboxylase, biotin... 216 2e-55 pir||S71006 biotin carboxylase protein A1 - Saccharopolyspora er... 216 3e-55 ref|NP_344948.1| (NC_003028) acetyl-CoA carboxylase, biotin carb... 215 5e-55 pir||T42206 probable acyl-CoA carboxylase complex A chain - Stre... 215 6e-55 ref|NP_266934.1| (NC_002662) biotin carboxylase (EC 6.3.4.14) [L... 215 6e-55 ref|NP_357979.1| (NC_003098) Biotin carboxylase (a subunit of ac... 215 6e-55 gb|AAB40890.1| (U35023) acyl coenzyme A carboxylase [Corynebacte... 215 7e-55 ref|NP_232019.1| (NC_002505) carbamoyl-phosphate synthase, large... 214 7e-55 ref|NP_539644.1| (NC_003317) D-ALANINE--D-ALANINE LIGASE A [Bruc... 214 8e-55 pir||T42202 probable acyl-CoA carboxylase complex A chain - Stre... 214 9e-55 prf||2009329A urea amidolyase [Pichia jadinii] 214 1e-54 gb|AAG30191.1| (AF293442) biotin carboxylase [Streptomyces sp. R... 214 1e-54 ref|NP_522501.1| (NC_003296) PUTATIVE BIOTIN CARBOXYLASE PROTEIN... 213 2e-54 ref|NP_356721.1| (NC_003063) AGR_L_1864p [Agrobacterium tumefaci... 212 3e-54 ref|NP_266825.1| (NC_002662) pyruvate carboxylase (6.4.1.1) [Lac... 212 3e-54 ref|NP_372130.1| (NC_002758) acetyl-CoA carboxylase [Staphylococ... 212 3e-54 ref|NP_356380.1| (NC_003063) AGR_L_1177p [Agrobacterium tumefaci... 212 4e-54 ref|NP_269768.1| (NC_002737) putative acetyl-CoA carboxylase bio... 212 6e-54 ref|NP_420971.1| (NC_002696) acetyl/propionyl-CoA carboxylase, a... 209 3e-53 pdb|1EHI|A Chain A, D-Alanine:d-Lactate Ligase (Lmddl2) Of Vanco... 209 4e-53 sp|Q48745|DDL_LEUME D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 208 6e-53 gb|AAB18338.1| (U75444) D-Ala-D-Ala ligase2 [Leuconostoc mesente... 207 1e-52 ref|NP_274851.1| (NC_003112) carbamoyl-phosphate synthase, large... 207 1e-52 ref|NP_253100.1| (NC_002516) D-alanine--D-alanine ligase [Pseudo... 207 1e-52 gb|AAG40564.1|AF062308_2 (AF062308) acetyl-CoA carboxylase 2 [Ar... 207 1e-52 ref|NP_174850.1| (NC_003070) acetyl-CoA carboxylase, putative [A... 206 2e-52 ref|NP_454677.1| (NC_003198) carbamoyl-phosphate synthase large ... 206 2e-52 sp|P78992|PYC_PICPA PYRUVATE CARBOXYLASE (PYRUVIC CARBOXYLASE) (... 206 2e-52 sp|P14846|CARB_SALTY CARBAMOYL-PHOSPHATE SYNTHASE LARGE CHAIN (C... 206 3e-52 ref|NP_174849.1| (NC_003070) acetyl-CoA carboxylase, putative [A... 206 3e-52 dbj|BAA07012.1| (D34630) acetyl-CoA carboxylase [Arabidopsis tha... 206 3e-52 ref|NP_459072.1| (NC_003197) carbamoyl-phosphate synthase, large... 206 3e-52 gb|AAF18638.2|AC006228_9 (AC006228) F5J5.19 [Arabidopsis thaliana] 206 3e-52 ref|NP_283414.1| (NC_003116) carbamoyl phosphate synthase large ... 206 3e-52 ref|NP_276131.1| (NC_000916) carbamoyl-phosphate synthase, large... 206 4e-52 gb|AAL02056.1|AF294805_1 (AF294805) acetyl-coenzyme A carboxylas... 206 4e-52 gb|AAC41645.1| (L27074) acetyl-CoA carboxylase [Arabidopsis thal... 206 4e-52 ref|NP_519642.1| (NC_003295) PROBABLE CARBAMOYL-PHOSPHATE SYNTHA... 205 5e-52 gb|AAG30411.1|AF262949_2 (AF262949) pyruvate carboxylase [Mycoba... 205 5e-52 pir||T06161 acetyl-CoA carboxylase (EC 6.4.1.2) - wheat >gi|2827... 205 7e-52 sp|Q9TTS3|COA1_BOVIN ACETYL-COA CARBOXYLASE 1 (ACC-ALPHA) [INCLU... 204 8e-52 sp|Q28559|COA1_SHEEP ACETYL-COA CARBOXYLASE 1 (ACC-ALPHA) [INCLU... 204 9e-52 gb|AAF16526.1|AF191301_2 (AF191301) ADP-forming, carbamate-phosp... 204 9e-52 ref|NP_371727.1| (NC_002758) carbamoyl-phosphate synthase large ... 204 9e-52 ref|NP_225100.1| (NC_000922) Muramate-Ala Ligase & D-Ala-D-Ala L... 204 1e-51 pir||T02235 acetyl-CoA carboxylase (EC 6.4.1.2) - maize >gi|8547... 204 1e-51 pdb|1CE8|A Chain A, Carbamoyl Phosphate Synthetase From Escheric... 204 1e-51 ref|NP_285727.1| (NC_002655) carbamoyl-phosphate synthase large ... 204 1e-51 ref|NP_414574.1| (NC_000913) carbamoyl-phosphate synthase large ... 204 1e-51 ref|NP_246444.1| (NC_002663) CarB [Pasteurella multocida] >gi|12... 204 1e-51 dbj|BAA93643.1| (AB025973) biotin carboxylase [Lactobacillus pla... 204 1e-51 pir||T09538 acetyl-CoA carboxylase (EC 6.4.1.2) - alfalfa >gi|49... 204 1e-51 pir||S73055 pyc protein - Mycobacterium tuberculosis >gi|560527|... 203 2e-51 sp|P11029|COAC_CHICK ACETYL-COA CARBOXYLASE (ACC) [INCLUDES: BIO... 203 2e-51 ref|NP_420636.1| (NC_002696) urea amidolyase-related protein [Ca... 203 2e-51 ref|NP_070102.1| (NC_000917) carbamoyl-phosphate synthase, large... 202 3e-51 pir||T44290 biotin carboxylase (EC 6.3.4.14) [imported] - Sulfol... 202 4e-51 ref|NP_217483.1| (NC_000962) pca [Mycobacterium tuberculosis H37... 202 5e-51 pir||S41121 acetyl-CoA carboxylase (EC 6.4.1.2) - human >gi|4523... 202 6e-51 gb|AAC39331.1| (AF029896) acetyl-coenzyme A carboxylase [Triticu... 202 6e-51 pir||T06162 acetyl-CoA carboxylase (EC 6.4.1.2) - wheat (fragmen... 202 6e-51 ref|NP_404125.1| (NC_003143) carbamoyl-phosphate synthase large ... 201 7e-51 ref|NP_252890.1| (NC_002516) D-alanine-D-alanine ligase A [Pseud... 201 7e-51 emb|CAC19876.1| (AJ131866) acetyl-CoA carboxylase [Brassica napus] 201 7e-51 gb|AAK97387.1|AF363615_1 (AF363615) D-alanine:D-alanine ligase 2... 201 8e-51 emb|CAB59603.1| (AL132662) pyruvate carboxylase [Streptomyces co... 201 8e-51 ref|NP_459135.1| (NC_003197) D-alanine-D-alanine ligase B, affec... 201 1e-50 pir||A57710 acetyl-CoA carboxylase (EC 6.4.1.2) - wheat >gi|5143... 201 1e-50 gb|AAF04493.2|AF157612_1 (AF157612) acetyl-CoA carboxylase 1 pre... 201 1e-50 gb|AAC49275.1| (U39321) acetyl-CoA carboxylase [Triticum aestivu... 201 1e-50 emb|CAB48407.1| (AJ243652) urea amidolyase homologue [Pseudomona... 201 1e-50 ref|NP_343814.1| (NC_002754) Biotin carboxylase a subunit of pro... 201 1e-50 ref|NP_454742.1| (NC_003198) D-alanine:D-alanine ligase B [Salmo... 200 2e-50 ref|NP_298397.1| (NC_002488) carbamoyl-phosphate synthase large ... 199 3e-50 pir||T07920 probable acetyl-CoA carboxylase (EC 6.4.1.2) - rape ... 199 3e-50 ref|NP_207168.1| (NC_000915) biotin carboxylase (accC) [Helicoba... 199 3e-50 ref|NP_280339.1| (NC_002607) biotin carboxylase; Acc [Halobacter... 199 3e-50 ref|NP_248384.1| (NC_000909) carbamoyl-phosphate synthase, large... 199 3e-50 emb|CAC19875.1| (AJ131865) acetyl-CoA carboxylase [Brassica napus] 199 4e-50 ref|NP_349251.1| (NC_003030) Carbamoylphosphate synthase large s... 199 4e-50 ref|NP_404198.1| (NC_003143) D-alanine--D-alanine ligase B [Yers... 199 4e-50 ref|NP_269044.1| (NC_002737) putative carbamoylphosphate synthet... 198 5e-50 ref|NP_215900.1| (NC_000962) Carbamoylphosphate synthase large s... 198 5e-50 ref|NP_071529.1| (NM_022193) acetyl-coenzyme A carboxylase [Ratt... 198 7e-50 ref|NP_414634.1| (NC_000913) D-alanine-D-alanine ligase B, affec... 198 7e-50 ref|NP_223728.1| (NC_000921) BIOTIN CARBOXYLASE [Helicobacter py... 198 8e-50 emb|CAA89922.1| (Z49809) unknown [Saccharomyces cerevisiae] 198 9e-50 pir||T07923 acetyl-CoA carboxylase (EC 6.4.1.2) A - rape (fragme... 197 1e-49 ref|NP_285788.1| (NC_002655) D-alanine-D-alanine ligase B, affec... 197 1e-49 pir||T07084 acetyl-CoA carboxylase (EC 6.4.1.2) A - soybean >gi|... 197 1e-49 ref|NP_281472.1| (NC_002163) carbamoyl-phosphate synthase large ... 197 2e-49 ref|NP_245081.1| (NC_002663) DdlB [Pasteurella multocida] >gi|13... 197 2e-49 emb|CAA80280.1| (Z22558) HFA1 [Saccharomyces cerevisiae] 197 2e-49 sp|P32874|HFA1_YEAST HFA1 PROTEIN 196 2e-49 pdb|1IOW| Complex Of Y216f D-Ala:d-Ala Ligase With Adp And A P... 196 2e-49 dbj|BAA24410.1| (D78165) acetyl-coenzyme A carboxylase like carb... 196 2e-49 emb|CAC84690.1| (AJ306727) D-Ala:D-Lac ligase [Enterococcus faec... 196 2e-49 ref|NP_439298.1| (NC_000907) D-alanine--D-alanine ligase (ddlB) ... 196 3e-49 ref|NP_253444.1| (NC_002516) carbamoylphosphate synthetase large... 196 4e-49 ref|NP_000655.1| (NM_000664) acetyl-Coenzyme A carboxylase alpha... 195 6e-49 ref|NP_389435.1| (NC_000964) carbamoyl-phosphate synthetase (cat... 194 9e-49 ref|NP_345739.1| (NC_003028) carbamoyl-phosphate synthase, large... 194 9e-49 ref|NP_358746.1| (NC_003098) Carbamoylphosphate synthase (ammoni... 194 9e-49 pir||T44419 carbamoyl-phosphate synthase (glutamine-hydrolyzing)... 194 1e-48 ref|NP_301455.1| (NC_002677) putative carbamoyl-phosphate syntha... 194 1e-48 emb|CAC84688.1| (AJ306726) D-Ala:D-Lac ligase [Enterococcus faec... 194 1e-48 ref|NP_457899.1| (NC_003198) phosphoribosylglycineamide syntheta... 193 2e-48 ref|NP_212334.1| (NC_001318) D-alanine--D-alanine ligase (ddlA) ... 193 3e-48 ref|NP_463044.1| (NC_003197) phosphoribosylglycinamide synthetas... 192 3e-48 ref|NP_290637.1| (NC_002655) phosphoribosylglycinamide synthetas... 192 4e-48 ref|NP_243402.1| (NC_002570) carbamoyl-phosphate synthetase (cat... 192 5e-48 ref|NP_301567.1| (NC_002677) acetyl/propionyl CoA carboxylase [a... 192 6e-48 gb|AAB67843.1| (U40341) carbamoyl phosphate synthetase large cha... 191 7e-48 ref|NP_229931.1| (NC_002505) phosphoribosylamine--glycine ligase... 191 7e-48 ref|NP_217802.1| (NC_000962) accA3 [Mycobacterium tuberculosis H... 191 7e-48 ref|NP_013934.1| (NC_001145) Similar to acetyl-coenzyme A carbox... 191 8e-48 ref|NP_285633.1| (NC_001264) carboxylase [Deinococcus radioduran... 191 8e-48 gb|AAA24455.1| (J05126) purD (EC 6.3.4.13) [Escherichia coli] 191 9e-48 pir||T07081 acetyl-CoA carboxylase (EC 6.4.1.2) B - soybean (fra... 191 1e-47 pir||A55579 biotin carboxyl carrier protein - Mycobacterium lepr... 191 1e-47 ref|NP_418433.1| (NC_000913) phosphoribosylglycinamide synthetas... 191 1e-47 emb|CAB44435.1| (AJ242913) carbamoylphosphate synthase (large su... 190 2e-47 emb|CAA03928.1| (AJ000109) carbamoylphosphate synthetase [Lactoc... 190 2e-47 gb|AAA37062.1| (J05503) carbamoyl-phosphate synthetase (E.C.6.3.... 190 2e-47 gb|AAF59156.1| (AE003839) CG8723 gene product [Drosophila melano... 190 2e-47 sp|P08955|PYR1_MESAU CAD PROTEIN [INCLUDES: GLUTAMINE-DEPENDENT ... 189 3e-47 ref|NP_439049.1| (NC_000907) phosphoribosylamine--glycine ligase... 189 3e-47 ref|NP_267519.1| (NC_002662) carbamoylphosphate synthetase [Lact... 189 3e-47 ref|NP_520963.1| (NC_003295) PROBABLE D-ALANINE--D-ALANINE LIGAS... 189 4e-47 pir||T30568 acetyl-CoA carboxylase (EC 6.4.1.2) - Emericella nid... 189 5e-47 pdb|1GSO|A Chain A, Glycinamide Ribonucleotide Synthetase (Gar-S... 188 7e-47 sp|P46537|CARB_BACCL CARBAMOYL-PHOSPHATE SYNTHASE, PYRIMIDINE-SP... 188 8e-47 ref|NP_232962.1| (NC_002506) D-alanine--D-alanine ligase [Vibrio... 188 8e-47 ref|NP_215488.1| (NC_000962) accA2 [Mycobacterium tuberculosis H... 187 1e-46 ref|NP_228367.1| (NC_000853) carbamoyl-phosphate synthase, large... 187 1e-46 ref|NP_294391.1| (NC_001263) carbamoyl-phosphate synthase, large... 187 1e-46 ref|NP_239976.1| (NC_002528) carbamoyl-phosphate synthase large ... 187 1e-46 emb|CAB56843.1| (X99978) carbamoyl-phosphate synthase large subu... 187 2e-46 ref|NP_245161.1| (NC_002663) PurD [Pasteurella multocida] >gi|13... 187 2e-46 gb|AAA74996.1| (U11295) carbamoyl phosphate synthetase (glutamin... 187 2e-46 ref|NP_487849.1| (NC_003272) carbamoyl phosphate synthetase larg... 187 2e-46 ref|NP_242487.1| (NC_002570) D-alanyl-D-alanine ligase A [Bacill... 187 2e-46 ref|NP_103112.1| (NC_002678) D-alanyl-D-alanine ligase [Mesorhiz... 186 3e-46 ref|NP_386277.1| (NC_003047) PROBABLE D-ALANINE--D-ALANINE LIGAS... 185 8e-46 sp|P77886|CARB_LACPL CARBAMOYL-PHOSPHATE SYNTHASE, PYRIMIDINE-SP... 184 8e-46 ref|XP_002428.5| (XM_002428) similar to carbamoyl-phosphate synt... 184 9e-46 emb|CAA72256.1| (Y11467) carbamoyl-phosphate synthase (glutamine... 184 9e-46 gb|AAD09129.1| (AF112473) PyrABCN [Emericella nidulans] 184 1e-45 ref|NP_250091.1| (NC_002516) probable pyruvate carboxylase [Pseu... 184 1e-45 ref|NP_389006.1| (NC_000964) carbamoyl-phosphate transferase-arg... 184 1e-45 ref|NP_103843.1| (NC_002678) carbamoyl-phosphate synthase large ... 184 2e-45 pir||S49991 acetyl-CoA carboxylase (EC 6.4.1.2) - smut fungus (U... 184 2e-45 pdb|1A9X|A Chain A, Carbamoyl Phosphate Synthetase: Caught In Th... 184 2e-45 ref|XP_011009.3| (XM_011009) methylcrotonoyl-Coenzyme A carboxyl... 183 2e-45 ref|NP_004332.1| (NM_004341) carbamoyl-phosphate synthetase 2, a... 183 2e-45 pir||T33717 carbamoyl-phosphate synthase (glutamine-hydrolyzing)... 183 2e-45 ref|NP_385682.1| (NC_003047) PROBABLE CARBAMOYL-PHOSPHATE SYNTHA... 183 2e-45 gb|AAA68280.1| (M27174) carbamyl phosphate synthetase [Saccharom... 182 5e-45 ref|NP_012405.1| (NC_001142) First and second steps of pyrimidin... 182 5e-45 pir||A48757 acetyl-CoA carboxylase (EC 6.4.1.2) - Cyclotella cry... 182 6e-45 emb|CAA60825.1| (X87371) carbamyl phosphate synthetase [Saccharo... 182 6e-45 ref|NP_442333.1| (NC_000911) carbamoyl-phosphate synthase, pyrim... 182 6e-45 ref|NP_213366.1| (NC_000918) D-alanine:D-alanine ligase [Aquifex... 182 6e-45 ref|NP_355138.1| (NC_003062) AGR_C_3955p [Agrobacterium tumefaci... 182 6e-45 ref|NP_174283.1| (NC_003070) carbamoylphosphate synthetase, puta... 181 8e-45 ref|NP_532851.1| (NC_003304) carbamoylphosphate synthase large s... 181 9e-45 sp|Q91437|PYR1_SQUAC CAD PROTEIN [INCLUDES: GLUTAMINE-DEPENDENT ... 181 9e-45 ref|NP_446374.1| (NM_053922) acetyl-Coenzyme A carboxylase beta ... 181 1e-44 ref|NP_421694.1| (NC_002696) carbamoyl-phosphate synthase, large... 181 1e-44 ref|NP_465360.1| (NC_003210) highly similar to carbamoyl-phospha... 180 1e-44 ref|NP_407179.1| (NC_003143) phosphoribosylamine--glycine ligase... 180 1e-44 ref|NP_280547.1| (NC_002607) carbamoyl-phosphate synthase large ... 180 2e-44 sp|O51927|DDL_BUCAP D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE... 180 2e-44 ref|NP_471283.1| (NC_003212) highly similar to carbamoyl-phospha... 179 4e-44 ref|NP_213797.1| (NC_000918) carbamoyl-phosphate synthase large ... 179 4e-44 sp|Q09794|PYR1_SCHPO URA1 PROTEIN [INCLUDES: GLUTAMINE-DEPENDENT... 178 6e-44 pir||I67805 purine synthesis multifunctional protein - mouse >gi... 178 9e-44 emb|CAB93363.1| (AL357523) carbamoylphosphate synthetase large c... 178 9e-44 ref|NP_172454.1| (NC_003070) putative phosphoribosylglycinamide ... 177 1e-43 ref|NP_520312.1| (NC_003295) PROBABLE PHOSPHORIBOSYLAMINE--GLYCI... 177 1e-43 ref|NP_253542.1| (NC_002516) phosphoribosylamine--glycine ligase... 176 2e-43 sp|P78820|COAC_SCHPO ACETYL-COA CARBOXYLASE (ACC) [INCLUDES: BIO... 176 2e-43 ref|NP_228072.1| (NC_000853) D-alanine--D-alanine ligase [Thermo... 176 2e-43 ref|NP_034386.1| (NM_010256) phosphoribosylglycinamide formyltra... 176 3e-43 ref|NP_241500.1| (NC_002570) phosphoribosylglycinamide synthetas... 176 3e-43 gb|AAD53933.1|AF179611_17 (AF179611) D-alanine:D-alanine ligase ... 176 3e-43 pir||T46882 phosphoribosylamine--glycine ligase (EC 6.3.4.13) [i... 175 4e-43 ref|NP_284760.1| (NC_003116) D-alanine--D-alanine ligase B [Neis... 175 5e-43 gb|AAB62175.1| (U94527) vancomycin resistance protein B [Enteroc... 175 6e-43 ref|NP_001084.1| (NM_001093) acetyl-Coenzyme A carboxylase beta ... 175 6e-43 gb|AAC78719.1| (U43091) carbamoylphosphate synthetase heavy subu... 175 8e-43 ref|NP_539439.1| (NC_003317) CARBAMOYL-PHOSPHATE SYNTHASE LARGE ... 175 8e-43 ref|NP_273472.1| (NC_003112) D-alanine--D-alanine ligase [Neisse... 174 9e-43 gb|AAC53250.1| (U20892) glycinamide ribonucleotide synthetase [M... 174 1e-42 sp|Q99148|PUR2_YARLI BIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN AD... 174 1e-42 ref|NP_441646.1| (NC_000911) glycinamide ribonucleotide syntheta... 174 1e-42 pir||S65074 pyrimidine synthesis protein URA1 - fission yeast (... 174 1e-42 gb|AAA20073.1| (M92156) acetyl-CoA carboxylase [Saccharomyces ce... 174 1e-42 ref|NP_000810.1| (NM_000819) phosphoribosylglycinamide formyltra... 174 1e-42 ref|NP_299258.1| (NC_002488) glycinamide ribonucleotide syntheta... 174 1e-42 ref|NP_214438.1| (NC_000918) carbamoyl-phosphate synthase large ... 174 1e-42 ref|NP_014413.1| (NC_001146) acetyl-CoA carboxylase; Acc1p [Sacc... 174 1e-42 emb|CAB95026.1| (AJ237851) D-alanine-D-alanine ligase [Prochloro... 174 2e-42 ref|NP_243761.1| (NC_002570) arginine specific carbamoyl-phospha... 173 2e-42 ref|NP_377467.1| (NC_003106) 1049aa long hypothetical carbamoyl-... 173 2e-42 ref|NP_503072.1| (NM_070671) Carbamoyl-phosphate synthase (CPSas... 173 3e-42 dbj|BAA06809.1| (D32051) GARS protein [Homo sapiens] 172 3e-42 ref|NP_540436.1| (NC_003317) PHOSPHORIBOSYLAMINE-GLYCINE LIGASE ... 172 3e-42 ref|NP_223393.1| (NC_000921) D-ALANINE--D-ALANINE LIGASE [Helico... 172 4e-42 ref|NP_107762.1| (NC_002678) phosphoribosylamine-glycine ligase ... 172 4e-42 ref|NP_275136.1| (NC_003112) phosphoribosylamine--glycine ligase... 172 5e-42 gb|AAD51318.2| (AF169248) acetylglutamate-activated carbamoyl ph... 172 5e-42 gb|AAF71749.1| (AF257743) phosphoribosylglycinamide formyltransf... 172 5e-42 pir||A49930 carB protein homolog - Mycobacterium bovis (strain B... 171 8e-42 gb|AAB62176.1| (U94528) vancomycin resistance protein B [Enteroc... 171 9e-42 ref|NP_213510.1| (NC_000918) phosphoribosylamine-glycine ligase ... 171 9e-42 ref|NP_207711.1| (NC_000915) carbamoyl-phosphate synthase (gluta... 170 1e-41 gb|AAB62174.1| (U94526) vancomycin resistance protein B [Enteroc... 170 1e-41 gb|AAD43968.1|AF119250_1 (AF119250) carbamoyl-phosphate syntheta... 170 2e-41 ref|NP_384964.1| (NC_003047) PROBABLE PHOSPHORIBOSYLAMINE--GLYCI... 170 2e-41 pir||T51694 D-alanine--D-alanine ligase (EC 6.3.2.4) [imported] ... 170 2e-41 ref|NP_493922.1| (NM_061521) acetyl-CoA carboxylase [Caenorhabdi... 170 2e-41 ref|NP_283078.1| (NC_003116) phosphoribosylamine--glycine ligase... 170 2e-41 ref|NP_223571.1| (NC_000921) CARBAMOYL-PHOSPHATE SYNTHASE LARGE ... 170 2e-41 ref|NP_207532.1| (NC_000915) D-alanine:D-alanine ligase A (ddlA)... 169 3e-41 emb|CAA55651.1| (X79049) vanA2 [Oerskovia turbata] 169 3e-41 ref|NP_523497.1| (NM_078773) adenosine 3; Complementation group ... 169 3e-41 pir||T42531 acetyl-CoA carboxylase (EC 6.4.1.2) - fission yeast ... 169 4e-41 ref|NP_058768.1| (NM_017072) carboamyl-phosphate synthetase 1 [R... 169 4e-41 ref|NP_012643.1| (NC_001142) carbamyl phosphate synthetase; Cpa2... 169 4e-41 ref|NP_281959.1| (NC_002163) putative D-alanine--D-alanine ligas... 169 5e-41 emb|CAB95892.1| (AL359988) putative acetyl/propionyl CoA carboxy... 169 6e-41 gb|AAC60207.1| (U65893) carbamoyl-phosphate synthetase III [Onco... 168 6e-41 ref|NP_388535.1| (NC_000964) phosphoribosylglycinamide synthetas... 168 8e-41 gb|AAB62566.1| (AF006491) carbamoyl-phosphate synthetase III; CP... 167 1e-40 pir||S37104 phosphoribosylamine--glycine ligase (EC 6.3.4.13) - ... 167 1e-40 ref|NP_342159.1| (NC_002754) Carbamoyl-phosphate synthase large ... 167 2e-40 sp|P20054|PYR1_DICDI PROTEIN PYR1-3 [INCLUDES: GLUTAMINE-DEPENDE... 167 2e-40 ref|NP_495838.1| (NM_063437) glutamine-dependent carbamoyl-phosp... 167 2e-40 sp|P16340|PUR2_DROPS TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN A... 166 2e-40 pir||S53602 carbamoyl-phosphate synthase (glutamine-hydrolyzing)... 166 2e-40 sp|P00967|PUR2_DROME TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN A... 166 2e-40 gb|AAA96435.1| (L31362) carbamyl phosphate synthetase III [Squal... 166 2e-40 dbj|BAA94293.1| (AB029444) Carbamoyl-phosphate Synthetase [Leish... 166 3e-40 pir||S23738 pyr1-3 protein - slime mold (Dictyostelium discoideu... 166 3e-40 ref|XP_040883.1| (XM_040883) similar to CARBAMOYL-PHOSPHATE SYNT... 166 3e-40 pir||T18410 carbamoyl-phosphate synthase (glutamine-hydrolyzing)... 166 3e-40 pir||T30820 carbamoyl-phosphate synthase (ammonia) (EC 6.3.4.16)... 165 4e-40 gb|AAA28562.1| (J02527) Gart polypeptide 1.7 kb transcript [Dros... 165 4e-40 gb|AAB49636.1| (U72704) vancomycin resistance protein [Enterococ... 165 5e-40 ref|NP_355054.1| (NC_003062) AGR_C_3788p [Agrobacterium tumefaci... 165 5e-40 gb|AAF48639.2| (AE003503) CG18572 gene product [Drosophila melan... 165 7e-40 ref|NP_422008.1| (NC_002696) carbamoyl-phosphate synthase/carbox... 165 7e-40 gb|AAF04494.2|AF157613_1 (AF157613) acetyl-CoA carboxylase 2 [To... 165 7e-40 ref|NP_532764.1| (NC_003304) D-alanine:D-alanine ligase [Agrobac... 164 9e-40 sp|P21872|PUR2_CHICK TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN A... 164 1e-39 gb|AAG10785.1| (AF286897) carbamoyl phosphate synthetase II [Pla... 164 1e-39 pir||T39898 carbamoyl-phosphate synthase (glutamine-hydrolyzing)... 164 1e-39 gb|AAG09178.1| (AF174494) purine biosynthetic pathway protein AD... 164 2e-39 sp|Q9ZF44|PUR2_LACLA PHOSPHORIBOSYLAMINE--GLYCINE LIGASE (GARS) ... 163 2e-39 gb|AAD18071.1| (AF129814) carbamyl phosphate synthetase II; CPS.... 163 3e-39 ref|NP_267669.1| (NC_002662) phosphoribosylamine-glycine ligase ... 163 3e-39 gb|AAG10786.1| (AF286898) carbamoyl phosphate synthetase II [Pla... 163 3e-39 gb|AAK28428.1|AF251259_1 (AF251259) D-alanine-D-X ligase VanD4 [... 163 3e-39 ref|NP_353670.1| (NC_003062) AGR_C_1152p [Agrobacterium tumefaci... 163 3e-39 sp|Q91293|CPSM_RANCA CARBAMOYL-PHOSPHATE SYNTHASE [AMMONIA], MIT... 162 3e-39 ref|NP_302459.1| (NC_002677) phosphoribosylamine-glycine ligase ... 162 4e-39 gb|AAB41852.1| (U69163) D-Alanine:D-Alanine ligase [Streptococcu... 162 4e-39 emb|CAA04374.1| (AJ000883) purD [Lactococcus lactis] 162 6e-39 emb|CAB56348.1| (AL118514) phosphoribosylamine-glycine ligase (E... 162 6e-39 ref|NP_001866.1| (NM_001875) carbamoyl-phosphate synthetase 1, m... 162 7e-39 gb|AAB62520.1| (U91913) D-alanine:D-alanine ligase [Streptococcu... 162 7e-39 gb|AAA60989.1| (L29641) D-alanine-D-alanine ligase-related enzym... 161 9e-39 gb|AAL38923.1| (AF325676) acetyl-CoA carboxylase [Lolium multifl... 161 9e-39 ref|NP_487550.1| (NC_003272) phosphoribosylamine--glycine ligase... 161 9e-39 gb|AAA60988.1| (L29640) D-alanine-D-alanine ligase-related enzym... 161 1e-38 gb|AAB41856.1| (U69167) D-Alanine:D-Alanine ligase [Streptococcu... 161 1e-38 gb|AAA24785.1| (L15304) vanB2 ORF [Enterococcus faecalis] 160 1e-38 pir||A64472 carbamoyl-phosphate synthase, large chain (EC 6.3.-.... 160 1e-38 gb|AAF37343.1|AF170804_1 (AF170804) D-alanine:D-alanine ligase [... 160 2e-38 pir||T30518 carbamoyl-phosphate synthase (ammonia) (EC 6.3.4.16)... 160 2e-38 ref|NP_248381.1| (NC_000909) carbamoyl-phosphate synthase, mediu... 160 2e-38 ref|NP_268447.1| (NC_002737) phosphoribosylamine-glycine ligase ... 160 2e-38 sp|Q26255|PUR2_CHITE TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN A... 160 2e-38 sp|P20772|PUR2_SCHPO BIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN AD... 159 3e-38 ref|NP_215286.1| (NC_000962) purD [Mycobacterium tuberculosis H3... 159 3e-38 ref|NP_388105.1| (NC_000964) phosphoribosylglycinamide formyltra... 159 3e-38 gb|AAC16915.1| (U91914) D-alanine:D-alanine ligase [Streptococcu... 159 3e-38 pir||S47267 5'-phosphoribosyl-1-glycinamide transformylase T - B... 159 3e-38 ref|NP_230873.1| (NC_002505) phosphoribosylglycinamide formyltra... 159 4e-38 gb|AAF37342.1|AF170803_1 (AF170803) D-alanine:D-alanine ligase [... 159 4e-38 emb|CAB07850.1| (Z93780) carbamoyl phosphate synthetase III [Tak... 159 4e-38 dbj|BAA89446.1| (AB003161) 5'-phosphoribosylglycinamide syntheta... 159 5e-38 gb|AAB17900.1| (U39775) D-alanine:D-alanine ligase [Enterococcus... 159 5e-38 ref|NP_298089.1| (NC_002488) D-alanine--D-alanine ligase B [Xyle... 158 6e-38 ref|NP_295154.1| (NC_001263) phosphoribosylamine--glycine ligase... 158 8e-38 ref|NP_348024.1| (NC_003030) Phosphoribosylamine-glycine ligase ... 157 1e-37 gb|AAB62519.1| (U91912) D-alanine:D-alanine ligase [Streptococcu... 157 1e-37 ref|NP_471210.1| (NC_003212) phosphoribosylglycinamide synthetas... 157 2e-37 sp|P46056|CARB_TRICU CARBAMOYL-PHOSPHATE SYNTHASE, ARGININE-SPEC... 157 2e-37 Sequences not found previously or not previously below threshold: >ref|NP_286119.1| (NC_002655) Z0477 gene product [Escherichia coli O157:H7 EDL933] ref|NP_308458.1| (NC_002695) D-alanine-D-alanine ligase A [Escherichia coli O157:H7] ref|NP_414915.1| (NC_000913) D-alanine-D-alanine ligase A [Escherichia coli K12] sp|P23844|DDLA_ECOLI D-ALANINE--D-ALANINE LIGASE A (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||CEECDA D-alanine--D-alanine ligase (EC 6.3.2.4) A - Escherichia coli gb|AAA23671.1| (M58467) D-alanine:D-alanine ligase A [Escherichia coli] gb|AAB18104.1| (U73857) D-alanine--D-alanine ligase A [Escherichia coli] gb|AAC73484.1| (AE000144) D-alanine-D-alanine ligase A [Escherichia coli K12] gb|AAG54727.1|AE005217_5 (AE005217) Z0477 gene product [Escherichia coli O157:H7 EDL933] dbj|BAB33854.1| (AP002551) D-alanine-D-alanine ligase A [Escherichia coli O157:H7] Length = 364 Score = 283 bits (725), Expect = 1e-75 Identities = 364/364 (100%), Positives = 364/364 (100%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN Sbjct: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML Sbjct: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL Sbjct: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ Sbjct: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR Sbjct: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL Sbjct: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 Query: 361 KTTM 364 KTTM Sbjct: 361 KTTM 364 >ref|NP_454975.1| (NC_003198) D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica serovar Typhi] ref|NP_459375.1| (NC_003197) D-alanine-D-alanine ligase A [Salmonella typhimurium LT2] sp|P15051|DDLA_SALTY D-alanine--D-alanine ligase A (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) pir||CEEBDT D-alanine--D-alanine ligase (EC 6.3.2.4) A - Salmonella typhimurium gb|AAA27056.1| (M20793) D-alanine:D-alanine ligase (EC 6.3.2.4) [Salmonella typhimurium] gb|AAL19334.1| (AE008713) D-alanine-D-alanine ligase A [Salmonella typhimurium LT2] emb|CAD08835.1| (AL627266) D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica serovar Typhi] Length = 364 Score = 283 bits (725), Expect = 1e-75 Identities = 327/364 (89%), Positives = 344/364 (93%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDK+RFDVVLLGIDK GQWHV+DA NYL N Sbjct: 1 MAKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQN 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 ADDPAHIALRPSA SLAQVPGKH+HQLI+AQNGQPLPTVDVIFPIVHGTLGEDGSLQGML Sbjct: 61 ADDPAHIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 RVANLPFVGSDVL+SAACMDKDV KRLLRDAGLNIAPFITLTR NRH SFAEVES+LGL Sbjct: 121 RVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGL 180 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 PLFVKPANQGSSVGVSKV +E QY AV LAFEFDHKV+VEQGIKGREIECAVLGNDNPQ Sbjct: 181 PLFVKPANQGSSVGVSKVANEAQYQQAVALAFEFDHKVVVEQGIKGREIECAVLGNDNPQ 240 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 ASTCGEIVL S+FYAYDTKYID++GA+VVVPA I E+NDKIRAIA+QAYQTLGCAGMAR Sbjct: 241 ASTCGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMAR 300 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 VDVFLT +NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLI+RLIELALERH A+NAL Sbjct: 301 VDVFLTADNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELALERHTANNAL 360 Query: 361 KTTM 364 KTTM Sbjct: 361 KTTM 364 >gb|AAK67986.1|AF297332_1 (AF297332) 3-methylcrotonyl-CoA carboxylase biotin-containing subunit [Homo sapiens] Length = 725 Score = 277 bits (709), Expect = 1e-73 Identities = 56/355 (15%), Positives = 122/355 (33%), Gaps = 22/355 (6%) Query: 13 KSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPS 72 + + + + +NI + +R ++ + + V + Y + H+ + Sbjct: 35 RQRTMKYTTATGRNITKVLIANRGEIACRVMRTAKKLGVQTVAVYSEADRNSMHVDMADE 94 Query: 73 ATSLAQVPG-KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSD 131 A S+ P + + I P G L E+ + + + F+G Sbjct: 95 AYSIGPAPSQQSYLSMEKIIQVAKTSAAQAIHPGC-GFLSENMEFAELCKQEGIIFIGPP 153 Query: 132 VLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGS 191 A K +K ++ AG+ + ++ + E ++G P+ +K G Sbjct: 154 PSAIRDMGIKSTSKSIMAAAGVPVVEGYHG--EDQSDQCLKEHARRIGYPVMIKAVRGGG 211 Query: 192 SVGVSKVTSEEQYAIAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTC 244 G+ V SE+++ ++ A D +++E+ + R +E V G+ + A Sbjct: 212 GKGMRIVRSEQEFQEQLESARREAKKSFNDDAMLIEKFVDTPRHVEVQVFGDHHGNAVYL 271 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 E K I+E I E+ K+ AV+A + + G V+ Sbjct: 272 FERD--CSVQRRHQKIIEE-----APAPGIKSEVRKKLGEAAVRAAKAVNYVGAGTVEFI 324 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 + ++ E+NT + P +G + R+ + + Sbjct: 325 MDSKHNFCFMEMNTRLQVEH----PVTEMITGTDLVEWQLRIAAGEKIPLSQEEI 375 >ref|NP_064551.2| (NM_020166) methylcrotonoyl-Coenzyme A carboxylase 1 (alpha); 3-methylcrotonyl-CoA carboxylase biotin-containing subunit [Homo sapiens] dbj|BAB14377.1| (AK023051) unnamed protein product [Homo sapiens] gb|AAG50245.1|AF310339_1 (AF310339) 3-methylcrotonyl-CoA carboxylase alpha subunit [Homo sapiens] gb|AAH04187.1|AAH04187 (BC004187) methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [Homo sapiens] gb|AAH04214.1|AAH04214 (BC004214) methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [Homo sapiens] Length = 725 Score = 277 bits (709), Expect = 1e-73 Identities = 56/355 (15%), Positives = 122/355 (33%), Gaps = 22/355 (6%) Query: 13 KSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPS 72 + + + + +NI + +R ++ + + V + Y + H+ + Sbjct: 35 RQRTMKYTTATGRNITKVLIANRGEIACRVMRTAKKLGVQTVAVYSEADRNSMHVDMADE 94 Query: 73 ATSLAQVPG-KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSD 131 A S+ P + + I P G L E+ + + + F+G Sbjct: 95 AYSIGPAPSQQSYLSMEKIIQVAKTSAAQAIHPGC-GFLSENMEFAELCKQEGIIFIGPP 153 Query: 132 VLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGS 191 A K +K ++ AG+ + ++ + E ++G P+ +K G Sbjct: 154 PSAIRDMGIKSTSKSIMAAAGVPVVEGYHG--EDQSDQCLKEHARRIGYPVMIKAVRGGG 211 Query: 192 SVGVSKVTSEEQYAIAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTC 244 G+ V SE+++ ++ A D +++E+ + R +E V G+ + A Sbjct: 212 GKGMRIVRSEQEFQEQLESARREAKKSFNDDAMLIEKFVDTPRHVEVQVFGDHHGNAVYL 271 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 E K I+E I E+ K+ AV+A + + G V+ Sbjct: 272 FERD--CSVQRRHQKIIEE-----APAPGIKSEVRKKLGEAAVRAAKAVNYVGAGTVEFI 324 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 + ++ E+NT + P +G + R+ + + Sbjct: 325 MDSKHNFCFMEMNTRLQVEH----PVTEMITGTDLVEWQLRIAAGEKIPLSQEEI 375 >dbj|BAA99407.1| (AB029826) 3-methylcrotonyl-CoA carboxylase biotin-containing subunit [Homo sapiens] gb|AAG53095.1|AF310972_1 (AF310972) 3-methylcrotonyl-CoA carboxylase alpha subunit [Homo sapiens] Length = 725 Score = 277 bits (709), Expect = 1e-73 Identities = 56/355 (15%), Positives = 122/355 (33%), Gaps = 22/355 (6%) Query: 13 KSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPS 72 + + + + +NI + +R ++ + + V + Y + H+ + Sbjct: 35 RQRTMKYTTATGRNITKVLIANRGEIACRVMRTAKKLGVQTVAVYSEADRNSMHVDMADE 94 Query: 73 ATSLAQVPG-KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSD 131 A S+ P + + I P G L E+ + + + F+G Sbjct: 95 AYSIGPAPSQQSYLSMEKIIQVAKTSAAQAIHPGC-GFLSENMEFAELCKQEGIIFIGPP 153 Query: 132 VLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGS 191 A K +K ++ AG+ + ++ + E ++G P+ +K G Sbjct: 154 PSAIRDMGIKSTSKSIMAAAGVPVVEGYHG--EDQSDQCLKEHARRIGYPVMIKAVRGGG 211 Query: 192 SVGVSKVTSEEQYAIAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTC 244 G+ V SE+++ ++ A D +++E+ + R +E V G+ + A Sbjct: 212 GKGMRIVRSEQEFQEQLESARREAKKSFNDDAMLIEKFVDTPRHVEVQVFGDHHGNAVYL 271 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 E K I+E I E+ K+ AV+A + + G V+ Sbjct: 272 FERD--CSVQRRHQKIIEE-----APAPGIKSEVRKKLGEAAVRAAKAVNYVGAGTVEFI 324 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 + ++ E+NT + P +G + R+ + + Sbjct: 325 MDSKHNFCFMEMNTRLQVEH----PVTEMITGTDLVEWQLRIAAGEKIPLSQEEI 375 >ref|NP_539980.1| (NC_003317) BIOTIN CARBOXYLASE [Brucella melitensis] gb|AAL52244.1| (AE009546) BIOTIN CARBOXYLASE [Brucella melitensis] Length = 459 Score = 265 bits (678), Expect = 4e-70 Identities = 61/348 (17%), Positives = 115/348 (32%), Gaps = 23/348 (6%) Query: 21 LQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP 80 Q + + +R ++ L + + + + + D H+ L + + P Sbjct: 3 GQQSAMFQKILIANRGEIALRVLRACKELGIKTVAVHSTADADAMHVRLADESVCIGPPP 62 Query: 81 GKH-EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACM 139 + + + D I P +G L E+ +L ++ F+G Sbjct: 63 SRDSYLNIHQIVAACEITGADAIHPG-YGFLSENAKFAEILEAHDITFIGPTASHIRIMG 121 Query: 140 DKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVT 199 DK KR + G+ + P + + + ++G P+ +K + G G+ Sbjct: 122 DKIEAKRTAKRLGIPVVPGSDGGVTDEVEAA--RIAKEIGYPVIIKASAGGGGRGMKVAR 179 Query: 200 SEEQYAIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSD 252 S E+ IA+ A D V +E+ ++ R IE V+G+ A GE Sbjct: 180 SAEELPIALATARSEAGAAFGDDAVYIEKYLEKPRHIEVQVMGDGAGNAVHLGERD--CS 237 Query: 253 FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVV 312 K +E A+ E +KI I A LG G ++ + E Sbjct: 238 LQRRHQKVWEEGN-----SPALNAEAREKIGMICANACAELGYRGAGTIEFLY-EDGEFY 291 Query: 313 INEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 E+NT + P +G+ R+ + Sbjct: 292 FIEMNTRLQVEH----PVTEAITGIDLVHEQIRVAAGLGLSVKQKDIR 335 >ref|NP_442228.1| (NC_000911) biotin carboxylase [Synechocystis sp. PCC 6803] pir||S74380 biotin carboxylase accC - Synechocystis sp. (strain PCC 6803) dbj|BAA10298.1| (D64001) biotin carboxylase [Synechocystis sp. PCC 6803] Length = 448 Score = 264 bits (675), Expect = 9e-70 Identities = 54/342 (15%), Positives = 111/342 (31%), Gaps = 22/342 (6%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKH 83 + +R ++ L I + + + + H+ L + + P K Sbjct: 1 MQFAKILIANRGEIALRIIHSCEELGIPTVAVHSTIDRHALHVQLANESVCIGPPPSNKS 60 Query: 84 EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + + I P +G L E+ + + F+G A A DK Sbjct: 61 YLNIPNIIAAALTRNATAIHPG-YGFLAENARFAEICADHQITFIGPSPEAITAMGDKST 119 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 K+ ++ +G+ P + ++ +++G P+ +K G G+ V E+ Sbjct: 120 AKKTMQKSGVPCVPGSPGLI--ESEATALKIAAEIGYPVIIKATAGGGGRGMRLVQEEKD 177 Query: 204 YAIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 + A + V +E+ I+ R IE +L + + GE Sbjct: 178 FLKLFHAAQGEAGAAFGNPGVYLEKFIEKPRHIEFQILADSHGNVVHLGERD--CSIQRR 235 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEI 316 K ++E + P + K+ AV+A +++ G V+ + E+ Sbjct: 236 HQKLLEE-----APSPFLTPHLRKKMGEAAVKAAKSINYVGAGTVEFLVDGNGNFYFMEM 290 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 NT + P +G R+ R + Sbjct: 291 NTRIQVEH----PVTEMITGYDLISEQIRIAMGEKLRFRQSD 328 >gb|AAB88214.1| (U59234) biotin carboxylase [Synechococcus sp. PCC 7942] Length = 453 Score = 262 bits (670), Expect = 4e-69 Identities = 55/342 (16%), Positives = 111/342 (32%), Gaps = 22/342 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ-VPGKHEH 85 + +R ++ L + + + + + + H+ L A + + K Sbjct: 3 FNKILIANRGEIALRILRTCEELGIGTIAVHSTVDRNALHVQLADEAVCIGEAASSKSYL 62 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + + I P +G L E+ + +L F+G + A DK K Sbjct: 63 NIPNIIAAALTRNASAIHPG-YGFLAENARFAEICADHHLTFIGPSPDSIRAMGDKSTAK 121 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 ++ G+ P + S A+V +++G P+ +K G G+ V Sbjct: 122 ETMQRVGVPTIPGSDGLLTD--VDSAAKVAAEIGYPVMIKATAGGGGRGMRLVREPADLE 179 Query: 206 IAV------DLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A + + +E+ I R +E +L + GE Sbjct: 180 KLFLAAQGEAEAAFGNPGLYLEKFIDRPRHVEFQILADAYGNVVHLGERD--CSIQRRHQ 237 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K ++E A++ ++ K+ AV+ Q +G G V+ + E+NT Sbjct: 238 KLLEE-----APSPALSADLRQKMGDAAVKVAQAIGYIGAGTVEFLVDATGNFYFMEMNT 292 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + P +GL R+ + R + Sbjct: 293 RIQVEH----PVTEMITGLDLIAEQIRIAQGEALRFRQADIQ 330 >gb|AAB17902.2| (U39790) D-alanine:D-alanine ligase [Enterococcus faecium] Length = 358 Score = 261 bits (668), Expect = 6e-69 Identities = 137/358 (38%), Positives = 212/358 (58%), Gaps = 10/358 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ +++GG+SAEHEVS+ SA ++++AI + + V L+ I K+GQW + D Sbjct: 1 MKITLLYGGRSAEHEVSILSAFSVLNAIYYNYYQVQLVFITKEGQWVKGPLLTEKPASKD 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 H++ PS + G+ ++FP++HG GEDG++QG L Sbjct: 61 VLHLSWDPSGQ------TEEGFTGKVINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETL 114 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITL---TRANRHNISFAEVESKLGL 180 N+P+VG+ VL SA MDK +TK +L+ AG+ P++ + F + E L Sbjct: 115 NMPYVGAGVLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLY 174 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+FVKPAN GSSVG++K + E+ A+ A+++D + IVEQGI+ REIE AVLGN++ + Sbjct: 175 PMFVKPANMGSSVGITKAENREELQNALATAYQYDSRAIVEQGIEAREIEVAVLGNEDVR 234 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 + GE+V FY Y+ KYI+ ++ +PA + E+ K + A AY LG +G++R Sbjct: 235 TTLPGEVVKDVAFYDYEAKYINNK-IEMQIPAEVPEEVYQKAQEYAKLAYTMLGGSGLSR 293 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 D FLT +NE+ +NE+N++PGFT SMYP LW+ GL Y DLI LI+L + R+ Sbjct: 294 CDFFLTNKNELFLNELNSMPGFTEFSMYPLLWENMGLKYGDLIEELIQLGMNRYHQRQ 351 >sp|Q47827|DDL_ENTHR D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAB17904.1| (U39788) D-alanine:D-alanine ligase [Enterococcus hirae] Length = 358 Score = 261 bits (668), Expect = 6e-69 Identities = 140/358 (39%), Positives = 210/358 (58%), Gaps = 10/358 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ +++GG+SAEH+VS+ SA ++++AI + + V L+ I K+GQW + + Sbjct: 1 MKITLLYGGRSAEHDVSVLSAFSVLNAIYYTYYQVQLIFISKEGQWVKGPLLTEKPTSKE 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 H+ PS G+ ++FP++HG GEDG++QG L Sbjct: 61 DLHLTWDPSGKVT------DGFTGRVINPGEIKEEGTIVFPVLHGPNGEDGTIQGFLETL 114 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITL---TRANRHNISFAEVESKLGL 180 NLP+VG+ VL SA MDK +TK +L+ AG+ P++ + F + E L Sbjct: 115 NLPYVGAGVLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKIFDQCEGSLLY 174 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+FVKPAN GSSVG+SK + E+ A+ LA+++D + IVEQGI+ REIE AVLGN++ + Sbjct: 175 PMFVKPANMGSSVGISKAENREELQNALALAYQYDSRAIVEQGIEAREIEVAVLGNEDVR 234 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 + GE+V FY YD KYI+ ++ +PA + E+ K + A AY LG +G++R Sbjct: 235 TTLPGEVVKDVAFYDYDAKYINNK-IEMQIPAEVPEEVYQKAQEYAKIAYTMLGGSGLSR 293 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 D FLT +NE+ +NE+NT+PGFT SMYP LW+ GL Y DLI LI+L + R Sbjct: 294 CDFFLTNKNELFLNELNTMPGFTQFSMYPLLWENMGLKYGDLIEELIQLGINRFNQRQ 351 >ref|NP_076133.1| (NM_023644) methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [Mus musculus] gb|AAG50244.1|AF310338_1 (AF310338) 3-methylcrotonyl-CoA carboxylase alpha subunit [Mus musculus] Length = 717 Score = 261 bits (667), Expect = 7e-69 Identities = 58/354 (16%), Positives = 118/354 (32%), Gaps = 22/354 (6%) Query: 15 AEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSAT 74 + +I + +R ++ I + V + Y + H+ + A Sbjct: 33 RTMKYGTTPGGSITKVLIANRGEIACRVIRTAKKMGVQSVAVYSEADRNSMHVDMADEAY 92 Query: 75 SLAQVPG-KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVL 133 S+ P + + I P +G L E+ + + + F+G Sbjct: 93 SIGPAPSQQSYLAMEKIIQVAKSSAAQAIHPG-YGFLSENMEFAELCKQEGIIFIGPPSS 151 Query: 134 ASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSV 193 A K +K ++ AG+ + ++ + E K+G P+ +K G Sbjct: 152 AIRDMGIKSTSKSIMAAAGVPVVEGYHG--KDQSDQCLREHAGKIGYPVMIKAVRGGGGK 209 Query: 194 GVSKVTSEEQYAIAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGE 246 G+ V SE ++ ++ A D +++E+ + R +E V G+ + A E Sbjct: 210 GMRIVRSEREFQEQLESARREAKKSFNDDAMLIEKFVDTPRHVEVQVFGDHHGNAVYLFE 269 Query: 247 IVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT 306 K I+E I PE+ K+ AV+A + + G V+ + Sbjct: 270 RD--CSVQRRHQKIIEE-----APAPGINPEVRRKLGEAAVRAAKAVKYVGAGTVEFIMD 322 Query: 307 PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + E+NT + P +G + R+ + + Sbjct: 323 SRHNFYFMEMNTRLQVEH----PVTEMITGTDLVEWQLRIAAGEKIPLSQEEIP 372 >dbj|BAB25253.1| (AK007782) putative [Mus musculus] Length = 717 Score = 261 bits (667), Expect = 8e-69 Identities = 58/354 (16%), Positives = 118/354 (32%), Gaps = 22/354 (6%) Query: 15 AEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSAT 74 + +I + +R ++ I + V + Y + H+ + A Sbjct: 33 RTMKYGTTPGGSITKVLIANRGEIACRVIRTAKKMGVQSVAVYSEADRNSMHVDMADEAY 92 Query: 75 SLAQVPG-KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVL 133 S+ P + + I P +G L E+ + + + F+G Sbjct: 93 SIGPAPSQQSYLAMEKIIQVAKSSAAQAIHPG-YGFLSENMEFAELCKQEGIIFIGPPSS 151 Query: 134 ASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSV 193 A K +K ++ AG+ + ++ + E K+G P+ +K G Sbjct: 152 AIRDMGIKSTSKSIMAAAGVPVVEGYHG--KDQSDQCLREHAGKIGYPVMIKAVRGGGGK 209 Query: 194 GVSKVTSEEQYAIAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGE 246 G+ V SE ++ ++ A D +++E+ + R +E V G+ + A E Sbjct: 210 GMRIVRSEREFQEQLESARREAKKSFNDDAMLIEKFVDTPRHVEVQVFGDHHGNAVYLFE 269 Query: 247 IVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT 306 K I+E I PE+ K+ AV+A + + G V+ + Sbjct: 270 RD--CSVQRRHQKIIEE-----APAPGINPEVRRKLGEAAVRAAKAVKYVGAGTVEFIMD 322 Query: 307 PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + E+NT + P +G + R+ + + Sbjct: 323 SRHNFYFMEMNTRLQVEH----PVTEMITGTDLVEWQLRIAAGEKIPLSQEEIP 372 >gb|AAG49141.1|AF215736_1 (AF215736) D-alanine:D-alanine ligase [Enterococcus faecium] Length = 358 Score = 259 bits (662), Expect = 3e-68 Identities = 136/358 (37%), Positives = 211/358 (57%), Gaps = 10/358 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ +++GG+SA HEVS+ SA ++++AI + + V L+ I K+GQW + D Sbjct: 1 MKITLLYGGRSAGHEVSILSAFSVLNAIYYNYYQVQLVFITKEGQWVKGPLLTEKPASKD 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 H++ PS + G+ ++FP++HG GEDG++QG L Sbjct: 61 VLHLSWDPSGQ------TEEGFTGKVINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETL 114 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITL---TRANRHNISFAEVESKLGL 180 N+P+VG+ VL SA MDK +TK +L+ AG+ P++ + F + E L Sbjct: 115 NMPYVGAGVLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLY 174 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+FVKPAN GSSVG++K + E+ A+ A+++D + IVEQGI+ REIE AVLGN++ + Sbjct: 175 PMFVKPANMGSSVGITKAENREELQNALATAYQYDSRAIVEQGIEAREIEVAVLGNEDVR 234 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 + GE+V FY Y+ KYI+ ++ +PA + E+ K + A AY LG +G++R Sbjct: 235 TTLPGEVVKDVAFYDYEAKYINNK-IEMQIPAEVPEEVYQKAQEYAKLAYTMLGGSGLSR 293 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 D FLT +NE+ +NE+N++PGFT SMYP LW+ GL Y DLI LI+L + R+ Sbjct: 294 CDFFLTNKNELFLNELNSMPGFTEFSMYPLLWENMGLKYGDLIEELIQLGMNRYHQRQ 351 >ref|NP_102052.1| (NC_002678) biotin carboxylase [Mesorhizobium loti] dbj|BAB47838.1| (AP002994) biotin carboxylase [Mesorhizobium loti] Length = 447 Score = 258 bits (659), Expect = 7e-68 Identities = 57/342 (16%), Positives = 110/342 (31%), Gaps = 23/342 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKH-E 84 + +R ++ L + + + + D H+ L + + P + Sbjct: 1 MFQKILIANRGEIALRVLRACKELGIQTVVVHSTADADAMHVRLADESVCIGPPPSRDSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + D + P +G L E+ +L N+ F+G DK Sbjct: 61 LNIHQIVAACEITGADAVHPG-YGFLSENAKFADILAAHNITFIGPSGDHIRIMGDKIEA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 KR + G+ + P + +++G P+ +K + G G+ SE Sbjct: 120 KRTAKRLGIPVVPGSDGAVTEE--KEAKRIAAEIGYPVIIKASAGGGGRGMKVAHSEADL 177 Query: 205 AIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 +A+ A D V +E+ ++ R IE V G+ + GE Sbjct: 178 EVALQTARSEAGAAFGDDAVYIEKYLQKPRHIEVQVFGDGFGRGVHFGERD--CSLQRRH 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K +E A+ E +I I +A LG +G ++ E E+N Sbjct: 236 QKVWEE-----ANSPALNAEERSRIGGICAKAIADLGYSGAGTIEFLY-ENGEFYFIEMN 289 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 T + P +G+ R+ ++ Sbjct: 290 TRLQVEH----PVTEAITGIDLVHEQIRVASGGGLSVKQEDI 327 >ref|NP_389369.1| (NC_000964) pyruvate carboxylase [Bacillus subtilis] pir||F69685 pyruvate carboxylase (EC 6.4.1.1) pycA [similarity] - Bacillus subtilis emb|CAB13359.1| (Z99111) pyruvate carboxylase [Bacillus subtilis] Length = 1148 Score = 257 bits (657), Expect = 1e-67 Identities = 56/348 (16%), Positives = 109/348 (31%), Gaps = 24/348 (6%) Query: 23 SAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV--P 80 S ++I + +R ++ + + ++ + Y H A + + P Sbjct: 2 SQQSIQKVLVANRGEIAIRIFRACTELNIRTVAVYSKEDSGSYHRYKADEAYLVGEGKKP 61 Query: 81 GKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMD 140 + + VD I P +G L E+ + F+G D Sbjct: 62 IDAYLDIEGIIDIAKRNKVDAIHPG-YGFLSENIHFARRCEEEGIVFIGPKSEHLDMFGD 120 Query: 141 KDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTS 200 K + AG+ + P + + G P+ +K + G G+ V S Sbjct: 121 KVKAREQAEKAGIPVIPGSDG--PAETLEAVEQFGQANGYPIIIKASLGGGGRGMRIVRS 178 Query: 201 EEQYAIAVDL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDF 253 E + A + A + +V VE+ I + IE V+G+ E Sbjct: 179 ESEVKEAYERAKSEAKAAFGNDEVYVEKLIENPKHIEVQVIGDKQGNVVHLFERD--CSV 236 Query: 254 YAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVI 313 K I+ V +++PE+ D+I AV + + V+ + NE Sbjct: 237 QRRHQKVIE-----VAPSVSLSPELRDQICEAAVALAKNVNYINAGTVEFLV-ANNEFYF 290 Query: 314 NEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALK 361 E+N + +G+ + + N + Sbjct: 291 IEVNPRVQVEHT----ITEMITGVDIVQTQILVAQGHSLHSKKVNIPE 334 >ref|NP_484982.1| (NC_003272) biotin carboxylase [Nostoc sp. PCC 7120] sp|Q06862|ACCC_ANASP BIOTIN CARBOXYLASE (A SUBUNIT OF ACETYL-COA CARBOXYLASE (ACC) pir||A53311 biotin carboxylase (EC 6.3.4.14) - Anabaena sp. (strain PCC 7120) gb|AAB51770.1| (L14862) biotin carboxylase [Anabaena sp.] dbj|BAB72896.1| (AP003584) biotin carboxylase [Nostoc sp. PCC 7120] Length = 447 Score = 257 bits (657), Expect = 1e-67 Identities = 56/340 (16%), Positives = 114/340 (33%), Gaps = 22/340 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA-QVPGKHEH 85 + +R ++ L + + ++ + + + H+ L A + K Sbjct: 3 FDKILIANRGEIALRILRACEEMGIATIAVHSTVDRNALHVQLADEAVCIGEPASAKSYL 62 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + + I P +G L E+ + ++ F+G A DK K Sbjct: 63 NIPNIIAAALTRNASAIHPG-YGFLSENAKFAEICADHHIAFIGPTPEAIRLMGDKSTAK 121 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 ++ AG+ P E+ +G P+ +K G G+ V S +++ Sbjct: 122 ETMQKAGVPTVPGSEGLV--ETEQEGLELAKDIGYPVMIKATAGGGGRGMRLVRSPDEFV 179 Query: 206 IAV------DLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A + V +E+ I+ R IE +L ++ GE + Sbjct: 180 KLFLAAQGEAGAAFGNAGVYIEKFIERPRHIEFQILADNYGNVIHLGERD--CSIQRRNQ 237 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K ++E A+ ++ +K+ AV+A Q + G ++ L + E+NT Sbjct: 238 KLLEE-----APSPALDSDLREKMGQAAVKAAQFINYTGAGTIEFLLDRSGQFYFMEMNT 292 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 + P +G+ R+ + R D Sbjct: 293 RIQVEH----PVTEMVTGVDLLVEQIRIAQGERLRLTQDQ 328 >gb|AAF80469.1|AF163150_1 (AF163150) acetyl-CoA carboxylase [Glycine max] Length = 539 Score = 256 bits (654), Expect = 2e-67 Identities = 59/350 (16%), Positives = 117/350 (32%), Gaps = 20/350 (5%) Query: 17 HEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSL 76 H +L + + + +R ++ + I + + + Y D H+ L A + Sbjct: 62 HCGALHATCSGDKILIANRGEIAVRVIRTAHELGIPCVAVYSTIDKDALHVKLADEAVCI 121 Query: 77 AQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASA 136 + P + LI + + +G L E+ M R + F+G + + Sbjct: 122 GEAPSSQSYLLIPNVLSAAISRRCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIR 181 Query: 137 ACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVS 196 DK + ++ AG+ P + + +++G P+ +K G G+ Sbjct: 182 VMGDKATARETMKKAGVPTVPGSDGLL--QSTEEAIRLANEIGFPVMIKATAGGGGRGMR 239 Query: 197 KVTSEEQYAIAVDL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVL 249 + + A + V +E+ I R IE VL + GE Sbjct: 240 LAKEPAELVKFLQQAKSEAAAAFGNDGVYLEKYIQNPRHIEFQVLADKYGNVVHFGERD- 298 Query: 250 TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPEN 309 + K ++E A+ PE+ + AV A ++G G+ V+ L Sbjct: 299 -CSIQRRNQKLLEE-----APSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERG 352 Query: 310 EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 E+NT + P S + R+ R+ ++ Sbjct: 353 SFYFMEMNTRIQVEH----PVTEMISSTDLIEEQIRVAMGEKLRYKQEDI 398 >ref|NP_243491.1| (NC_002570) pyruvate carboxylase [Bacillus halodurans] dbj|BAB06344.1| (AP001516) pyruvate carboxylase [Bacillus halodurans] Length = 1150 Score = 256 bits (654), Expect = 2e-67 Identities = 53/337 (15%), Positives = 104/337 (30%), Gaps = 23/337 (6%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV--PGK 82 KNI + +R ++ + + H+ + Y H A + + P + Sbjct: 5 KNIKKVLVANRGEIAIRIFRACTELHIRTVAIYSKEDTGAYHRYKADEAYLVGEGKKPIE 64 Query: 83 HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKD 142 + VD I P +G L E+ + F+G ++ DK Sbjct: 65 AYLDIEGIIEIAKRHGVDAIHPG-YGFLSENIEFAKRCHEEGIIFIGPELEHLVMFGDKV 123 Query: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEE 202 + A L + P + K G P +K A G G+ V SE Sbjct: 124 QAREQAIKANLPVIPGSDGPVS--SLEDVKAFADKHGYPFIIKAALGGGGRGMRIVRSEN 181 Query: 203 QYAIAVDL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYA 255 + + A + +V VE+ I + IE +L + + E Sbjct: 182 DVQESYERAKSEAKAAFGNDEVYVEKFIENPKHIEVQILADKHGNTLHLYERD--CSVQR 239 Query: 256 YDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINE 315 K ++ V +++ ++ ++I AVQ + + V+ + E E Sbjct: 240 RHQKVVE-----VAPSVSLSEDVRERICQAAVQLAENVNYVNAGTVEFLVDREGNFYFIE 294 Query: 316 INTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 +N + +G+ + + Sbjct: 295 VNPRIQVEHT----ITEMVTGIDIVQSQLFIADGEHL 327 >pir||T07093 acetyl-CoA carboxylase (EC 6.4.1.2) biotin carboxylase chain precursor - soybean gb|AAC02267.1| (AF007100) biotin carboxylase precursor [Glycine max] gb|AAF80468.1|AF163149_1 (AF163149) acetyl-CoA carboxylase [Glycine max] Length = 539 Score = 256 bits (654), Expect = 3e-67 Identities = 58/350 (16%), Positives = 119/350 (33%), Gaps = 20/350 (5%) Query: 17 HEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSL 76 H +L + + + +R ++ + I + + + Y D H+ L A + Sbjct: 62 HCGALHATCSGDKILIANRGEIAVRVIRTAHELGIPCVAVYSTIDKDALHVKLADEAVCI 121 Query: 77 AQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASA 136 + P + LI + + +G L E+ M R + F+G + + Sbjct: 122 GEAPSSQSYLLIPNVLSAAISRRCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIR 181 Query: 137 ACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVS 196 DK + ++ AG+ P + + +++G P+ +K G G+ Sbjct: 182 VMGDKATARETMKKAGVPTVPGSDGLL--QSTEEAIRLANEIGFPVMIKATAGGGGRGMR 239 Query: 197 KVTSEEQYAIAVDL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVL 249 +++ + A + V +E+ I R IE VL + GE Sbjct: 240 LAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYIQNPRHIEFQVLADKYGNVVHFGERD- 298 Query: 250 TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPEN 309 + K ++E A+ PE+ + AV A ++G G+ ++ L Sbjct: 299 -CSIQRRNQKLLEE-----APSPALTPELRKAMGDAAVAAAASIGYIGVGTIEFLLDERG 352 Query: 310 EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 E+NT + P S + R+ R+ ++ Sbjct: 353 SFYFMEMNTRIQVEH----PVTEMISSTDLIEEQIRVAMGEKLRYKQEDI 398 >pir||T06279 acetyl-CoA carboxylase (EC 6.4.1.2), biotin carboxylase chain precursor - soybean gb|AAC23573.1| (AF068249) biotin carboxylase precursor [Glycine max] Length = 539 Score = 256 bits (654), Expect = 3e-67 Identities = 59/350 (16%), Positives = 118/350 (32%), Gaps = 20/350 (5%) Query: 17 HEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSL 76 H +L + + + +R ++ + I + + + Y D H+ L A + Sbjct: 62 HCGALHATCSGDKILIANRGEIAVRVIRTAHELGIPCVAVYSTIDKDALHVKLADEAVCI 121 Query: 77 AQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASA 136 + P + LI + + +G L E+ M R + F+G + + Sbjct: 122 GEAPSSQSYLLIPNVLSAAISRRCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIR 181 Query: 137 ACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVS 196 DK + ++ AG+ P + + +++G P+ +K G G+ Sbjct: 182 VMGDKATARETMKKAGVPTVPGSDGLL--QSTEEAIRLANEIGFPVMIKATAGGGGRGMR 239 Query: 197 KVTSEEQYAIAVDL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVL 249 ++ + A + V +E+ I R IE VL + GE Sbjct: 240 LAKEPAEFVKFLQQAKSEAAAAFGNDGVYLEKYIQNPRHIEFQVLADKYGNVVHFGERD- 298 Query: 250 TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPEN 309 + K ++E A+ PE+ + AV A ++G G+ V+ L Sbjct: 299 -CSIQRRNQKLLEE-----APSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERG 352 Query: 310 EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 E+NT + P S + R+ R+ ++ Sbjct: 353 SFYFMEMNTRIQVEH----PVTEMISSTDLIEEQIRVAMGEKLRYKQEDI 398 >pir||T44813 biotin carboxylase (EC 6.3.4.14) yngH [imported] - Bacillus subtilis gb|AAF08802.1|AF184956_9 (AF184956) YngH [Bacillus subtilis] Length = 444 Score = 253 bits (646), Expect = 2e-66 Identities = 56/344 (16%), Positives = 116/344 (33%), Gaps = 22/344 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV-PGKHE 84 + +R ++ + I + + + Y D H A + + + Sbjct: 1 MFTKVLIANRGEIAMRIIRTCSRLGIKTVAVYSEADRDAPHTKAATEAYLIGESRVSESY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D I P +G L E+ + N+ F+G A K Sbjct: 61 LNIERIIETAKKANADAIHPG-YGLLSENSRFAERCKQENIVFIGPAPDIIAKMGSKIEA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 ++ + AG+ + P ++ + + S++G P+ +K + G +G+ V +EE Sbjct: 120 RKAMEAAGVPVVPGVSESLGD--IQEACRTASQIGYPVMLKASAGGGGIGMQLVQNEEAL 177 Query: 205 AIAVD------LAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A + F D + +E+ I+ R IE +L + E Sbjct: 178 RKAYEGNKKRAADFFGDGSMYIEKVIEHARHIEVQLLADHFGHTIHLFERD--CSVQRRH 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E + ++ KI AV+A + +G ++ + P E+N Sbjct: 236 QKVIEE-----APSPFLDDKLRMKIGQTAVKAAKAIGYTNAGTIEFLVDPNQNFYFLEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALK 361 T + P + +GL + R+ + + + Sbjct: 291 TRLQVEH----PVTEEITGLDLVEQQLRIAAGHTLTFSQQDIKR 330 >ref|NP_214014.1| (NC_000918) biotin carboxylase [Aquifex aeolicus] pir||G70427 biotin carboxylase - Aquifex aeolicus gb|AAC07413.1| (AE000742) biotin carboxylase [Aquifex aeolicus] Length = 477 Score = 253 bits (646), Expect = 2e-66 Identities = 54/342 (15%), Positives = 110/342 (31%), Gaps = 22/342 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 + +R +V + I + + + Y H+ A + P + Sbjct: 1 MFRKVLVANRGEVAVRIIRACKELGIKTVAIYSEADVRSLHVKKADEAYLITGDPIRAYL 60 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + + D I P +G L E+ R + F+G DK K Sbjct: 61 DYVRIVDLAKQVGADAIHPG-YGFLAENADFARYCRRRGITFIGPTPEQIEMFGDKVKAK 119 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 +++++ GL P R ++G P+ +K A G G+ + +EE+ Sbjct: 120 KVMKEVGLPTIPGT--EEPVRTLEDAKHAVKEIGFPVMLKAAYGGGGRGMRVIRNEEELE 177 Query: 206 IAVDLA------FEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 + A F + +E+ + + IE +LG+ GE Sbjct: 178 KNFESAFREAETFFGKGDLFIEKYVENPKHIEVQILGDKYGNIIHLGERD--CSIQRRHQ 235 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEIN 317 K I+ + + ++ KI AV+A +G ++ + E E+N Sbjct: 236 KLIE-----IAPSPKLPQDLRMKILGNAVRAMTRVGYENAGTLEFLVDLKTGEYYFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 T + +G+ + + R+ + + Sbjct: 291 TRLQVEHT----ITEAITGVDIVEAMIRIAAGEPLPYLQSDI 328 >pir||T02431 acetyl-CoA carboxylase (EC 6.4.1.2), biotin carboxylase - common tobacco gb|AAC41659.1| (L38260) biotin carboxylase subunit [Nicotiana tabacum] prf||2118337A Ac-CoA carboxylase:SUBUNIT=biotin carboxylase [Nicotiana tabacum] Length = 536 Score = 253 bits (645), Expect = 3e-66 Identities = 57/354 (16%), Positives = 122/354 (34%), Gaps = 20/354 (5%) Query: 13 KSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPS 72 KS+ +L + + +R ++ + I + + + Y D H+ L Sbjct: 57 KSSTRGGALAATCRAEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADE 116 Query: 73 ATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDV 132 + + + P + +I + + +G L E+ M R + F+G + Sbjct: 117 SVCIGEAPSNQSYLVIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNP 176 Query: 133 LASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSS 192 + DK + +++AG+ P + + ++G P+ +K G Sbjct: 177 DSIRVMGDKSTARDTMKNAGVPTVPGSDGLL--QSTEEGVRLAEEIGYPVMIKATAGGGG 234 Query: 193 VGVSKVTSEEQYAIAVDL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCG 245 G+ +++ + A + V +E+ + R IE VL + G Sbjct: 235 RGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFG 294 Query: 246 EIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFL 305 E + K ++E A+ PE+ + + AV A ++G G+ V+ L Sbjct: 295 ERD--CSIQRRNQKLLEE-----APSPALTPELRNAMGDAAVAAAASIGYIGVGTVEFLL 347 Query: 306 TPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 E+NT + P S + + R+ R+ ++ Sbjct: 348 DERGSFYFMEMNTRIQVEH----PVTEMISSVDLIEEQIRVAMGEKLRYKQEDI 397 >ref|NP_372607.1| (NC_002758) D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus Mu50] ref|NP_375191.1| (NC_002745) D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus N315] dbj|BAB43170.1| (AP003136) D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus N315] dbj|BAB58245.1| (AP003364) D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus Mu50] Length = 356 Score = 253 bits (645), Expect = 3e-66 Identities = 145/367 (39%), Positives = 216/367 (58%), Gaps = 15/367 (4%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K + IVFGGKSAEHEVS+ +A+N+++AIDK ++ V ++ I G W + + Sbjct: 1 MTKENICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIK 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + D H+ + + D +FP++HG GEDG++QG+ Sbjct: 61 STDELHLENGEALEISQLLKESSSG-----------QPYDAVFPLLHGPNGEDGTIQGLF 109 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS---FAEVESK 177 V ++P+VG+ VL++A+ MDK V K+L GL P+I+ R+ V K Sbjct: 110 EVLDVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDK 169 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND 237 L P+FVKPAN GSSVG+SK +E + + AF+FD K+++EQG+ REIE AVLGND Sbjct: 170 LNYPVFVKPANLGSSVGISKCNNEAELKEGIKEAFQFDRKLVIEQGVNAREIEVAVLGND 229 Query: 238 NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 P+A+ GE+V FY Y +KY D ++ +PA + ++ +R +A++A++ C+G Sbjct: 230 YPEATWPGEVVKDVAFYDYKSKYKDGK-VQLQIPADLDEDVQLTLRNMALEAFKATDCSG 288 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 + R D F+T +N++ INE N +PGFT SMYPKLW+ GL Y +LIT+LIELA ERH Sbjct: 289 LVRADFFVTEDNQIYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELAKERHQDK 348 Query: 358 NALKTTM 364 K + Sbjct: 349 QKNKYKI 355 >gb|AAK25989.1|AF360279_1 (AF360279) putative biotin carboxylase [Arabidopsis thaliana] Length = 537 Score = 252 bits (643), Expect = 4e-66 Identities = 53/338 (15%), Positives = 112/338 (32%), Gaps = 20/338 (5%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ + I + + + Y D H+ L A + + P + +I Sbjct: 76 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADEAVCIGEAPSNQSYLVI 135 Query: 89 DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLL 148 + + +G L E+ M R + F+G + + DK + + Sbjct: 136 PNVLSAAISRGCTMLHPGYGFLSENALFVEMCRDHGINFIGPNPDSIRVMGDKATARETM 195 Query: 149 RDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV 208 ++AG+ P + V +++G P+ +K G G+ ++ + Sbjct: 196 KNAGVPTVPGSDGLL--QSTEEAVRVANEIGFPVMIKATAGGGGRGMRLAKEPGEFVKLL 253 Query: 209 DL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYI 261 A + +E+ + R IE VL + GE + K + Sbjct: 254 QQAKSEAAAAFGNDGCYLEKFVQNPRHIEFQVLADKFGNVVHFGERD--CSIQRRNQKLL 311 Query: 262 DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG 321 +E A+ E+ + AV A ++G G+ V+ L E+NT Sbjct: 312 EE-----APSPALTAELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQ 366 Query: 322 FTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 + P + + R+ R+ ++ Sbjct: 367 VEH----PVTEMIYSVDLIEEQIRVAMGEKLRYKQEDI 400 >ref|NP_198386.1| (NC_003076) acetyl-CoA carboxylase [Arabidopsis thaliana] pir||T01180 acetyl-CoA carboxylase (EC 6.4.1.2), biotin carboxylase - Arabidopsis thaliana gb|AAC09008.1| (U90879) biotin carboxylase subunit [Arabidopsis thaliana] gb|AAC09009.1| (U91414) heteromeric acetyl-CoA carboxylase biotin carboxylase subunit [Arabidopsis thaliana] gb|AAC13611.1| (AF058826) Arabidopsis thaliana biotin carboxylase subunit (GB:U90879) dbj|BAB11486.1| (AB025636) acetyl-CoA carboxylase, biotin carboxylase [Arabidopsis thaliana] Length = 537 Score = 252 bits (643), Expect = 5e-66 Identities = 53/338 (15%), Positives = 112/338 (32%), Gaps = 20/338 (5%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ + I + + + Y D H+ L A + + P + +I Sbjct: 76 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADEAVCIGEAPSNQSYLVI 135 Query: 89 DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLL 148 + + +G L E+ M R + F+G + + DK + + Sbjct: 136 PNVLSAAISRGCTMLHPGYGFLSENALFVEMCRDHGINFIGPNPDSIRVMGDKATARETM 195 Query: 149 RDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV 208 ++AG+ P + V +++G P+ +K G G+ ++ + Sbjct: 196 KNAGVPTVPGSDGLL--QSTEEAVRVANEIGFPVMIKATAGGGGRGMRLAKEPGEFVKLL 253 Query: 209 DL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYI 261 A + +E+ + R IE VL + GE + K + Sbjct: 254 QQAKSEAAAAFGNDGCYLEKFVQNPRHIEFQVLADKFGNVVHFGERD--CSIQRRNQKLL 311 Query: 262 DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG 321 +E A+ E+ + AV A ++G G+ V+ L E+NT Sbjct: 312 EE-----APSPALTAELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQ 366 Query: 322 FTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 + P + + R+ R+ ++ Sbjct: 367 VEH----PVTEMIYSVDLIEEQIRVAMGEKLRYKQEDI 400 >ref|NP_251581.1| (NC_002516) probable biotin carboxylase/biotin carboxyl carrier protein [Pseudomonas aeruginosa] pir||F83284 probable biotin carboxylase/biotin carboxyl carrier protein PA2891 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG06279.1|AE004715_5 (AE004715) probable biotin carboxylase/biotin carboxyl carrier protein [Pseudomonas aeruginosa] Length = 661 Score = 252 bits (643), Expect = 5e-66 Identities = 56/341 (16%), Positives = 110/341 (31%), Gaps = 22/341 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ-VPGKHE 84 + + +R ++ + + + Y D H+ L A + + Sbjct: 3 SFNKILVANRGEIACRVLRTAHELGYRSVAVYSEADADTRHVQLADEAVCIGPAAVAQSY 62 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 L + + I P +G L E+ A + F+G D A K ++ Sbjct: 63 LNLEAILDAARRSGAEAIHPG-YGFLSENAEFARACEAAGIVFIGPDAEAIHLMGSKRLS 121 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K + AG+ P A + + + ++G PL +K + G G+ V Q Sbjct: 122 KIAMLAAGVPCIPGYEG--AEQDDATLRREAERIGYPLMIKASAGGGGRGMRLVEEPGQL 179 Query: 205 AIAVDLA------FEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + A ++I+E+ + + R +E V G+ + GE Sbjct: 180 LEQLRTARSEALGAFGSAELILERAVLRPRHVEIQVFGDRHGNLLYLGERD--CSVQRRH 237 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E + ++ + AV+A ++ G V+ L + E+N Sbjct: 238 QKVIEE-----APCPVLDADLRRAMGEAAVKAAASVNYVGAGTVEFLLGEDGRFYFLEMN 292 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 T + P +G R+ E + Sbjct: 293 TRLQVEH----PVTELVTGQDLVAWQIRIAEGHPLPLRQEQ 329 >ref|NP_354336.1| (NC_003062) AGR_C_2451p [Agrobacterium tumefaciens] [Agrobacterium tumefaciens str. C58 (Cereon)] ref|NP_532020.1| (NC_003304) acetyl-CoA carboxylase, biotin carboxylase [Agrobacterium tumefaciens str. C58 (U. Washington)] gb|AAK87121.1| (AE008059) AGR_C_2451p [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAL42336.1| (AE009094) acetyl-CoA carboxylase, biotin carboxylase [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 448 Score = 251 bits (642), Expect = 6e-66 Identities = 57/342 (16%), Positives = 108/342 (30%), Gaps = 24/342 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKH-E 84 + + +R ++ L + + + + + D H+ L + + P + Sbjct: 1 MVSKILIANRGEIALRVLRAAKELGIPTVAVHSTADADAMHVRLADESVCIGPPPSRDSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + D + P +G L E+ +L + F+G DK Sbjct: 61 LNIHQIVAACEITGADAVHPG-YGFLSENAKFADILDAHGITFIGPTAEHIRIMGDKITA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K+ ++ G+ + P + E+ +G P+ +K G G+ +E Sbjct: 120 KQTAQELGIPVVPGSDGEVK---PENALEIARTIGFPVLIKATAGGGGRGMKVAKTEADL 176 Query: 205 AIAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 AV A + V +E+ + K R IE V G+ A GE Sbjct: 177 EDAVATARSEAAAAFGNDAVYMEKYLGKPRHIEVQVFGDGEGNAVHLGERD--CSLQRRH 234 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E A+ E KI I A + L G ++ E E+N Sbjct: 235 QKVLEE-----ANSPALTVEQRMKIGEICADAMRKLKYRGAGTIEFLY-ENGEFYFIEMN 288 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 T + P +G+ R+ + Sbjct: 289 TRLQVEH----PVTEAITGMDLVQEQIRVASGQGLSVTQADI 326 >sp|P25051|VANA_ENTFC VANCOMYCIN/TEICOPLANIN A-TYPE RESISTANCE PROTEIN VANA (VANA LIGASE) (D-ALANINE--D-LACTATE LIGASE) pir||CESOVM vancomycin resistance protein vanA - Enterococcus faecium plasmid pIP816 emb|CAA40215.1| (X56895) VANA ligase [Enterococcus faecium] gb|AAA65956.1| (M97297) vanA [Transposon Tn1546] Length = 343 Score = 251 bits (642), Expect = 6e-66 Identities = 127/355 (35%), Positives = 197/355 (54%), Gaps = 18/355 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I I+K +++ + +GI K G W + + Sbjct: 1 MNRIKVAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 D+ L P + K+ + VDV F +HG GEDGS+QG+ Sbjct: 61 NDNCYSAVLSPDKKMHGLLVKKNHE--------YEINHVDVAFSALHGKSGEDGSIQGLF 112 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 ++ +PFVG D+ +SA CMDK +T + ++AG+ F + + +R V + Sbjct: 113 ELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRP------VAATFTY 166 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-NP 239 P+FVKPA GSS GV KV S ++ A++ A ++D K+++EQ + G E+ CAVLGN Sbjct: 167 PVFVKPARSGSSFGVKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAAL 226 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVV---VPAAIAPEINDKIRAIAVQAYQTLGCA 296 +I L + + E G++ VPA ++ E +I+ A + Y+ LGC Sbjct: 227 VVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETAKKIYKALGCR 286 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 G+ARVD+FL +V+NE+NTLPGFT+ S YP++ A+G+ +LI RLI LAL Sbjct: 287 GLARVDMFLQDNGRIVLNEVNTLPGFTSYSRYPRMMAAAGIALPELIDRLIVLAL 341 >ref|NP_171808.1| (NC_003070) putative 3-methylcrotonyl-CoA carboxylase [Arabidopsis thaliana] gb|AAL50065.1| (AY070723) At1g03090/F10O3_8 [Arabidopsis thaliana] Length = 734 Score = 251 bits (641), Expect = 7e-66 Identities = 55/343 (16%), Positives = 109/343 (31%), Gaps = 23/343 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HEH 85 I + +R ++ + + + + Y D H+ A + + Sbjct: 38 IEKILVANRGEIACRIMRTAKRLGIQTVAVYSDADRDSLHVKSADEAVRIGPPSARLSYL 97 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + I P +G L E + + L F+G A DK +K Sbjct: 98 SGVTIMEAAARTGAQAIHPG-YGFLSESSDFAQLCEDSGLTFIGPPASAIRDMGDKSASK 156 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 R++ AG+ + P + K+G P+ +KP + G G+ V S + +A Sbjct: 157 RIMGAAGVPLVPGYHGH--EQDIDHMKSEAEKIGYPIIIKPTHGGGGKGMRIVQSGKDFA 214 Query: 206 IAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 + A + +++E+ I + R IE + G+ + E Sbjct: 215 DSFLGAQREAAASFGVNTILLEKYITRPRHIEVQIFGDKHGNVLHLYERD--CSVQRRHQ 272 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEIN 317 K I+E I+ + + AV A + +G V+ + ++ E+N Sbjct: 273 KIIEE-----APAPNISEKFRANLGQAAVSAARAVGYYNAGTVEFIVDTESDQFYFMEMN 327 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P G + R+ + Sbjct: 328 TRLQVEH----PVTEMIVGQDLVEWQIRVANGEPLPLSQSEVP 366 >emb|CAB61227.1| (Y15704) vana protein [Bacillus circulans] Length = 343 Score = 251 bits (640), Expect = 1e-65 Identities = 126/355 (35%), Positives = 195/355 (54%), Gaps = 18/355 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I IDK +++ + +GI K G W + + Sbjct: 1 MNRIKVAILFGGCSEEHDVSVKSAIEIAANIDKEKYETLYIGITKSGVWKMCEKPCVEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 D+ L P + K+ + VDV F ++HG GEDGS+QG+ Sbjct: 61 NDNCCSAVLSPDKKMHGLLVKKNHE--------YEIDHVDVAFSVLHGKSGEDGSIQGLF 112 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 ++ +PFVG D+ +SA CMDK +T + +AG+ F + ++ + Sbjct: 113 ELSGIPFVGCDIQSSAICMDKSLTYIVAENAGIATPEFWVFNKDDKP------MADTFTY 166 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+FVKPA GSS GV KV ++ A++LA ++D K+++EQ + G E+ CAVLGN + Sbjct: 167 PVFVKPARSGSSFGVKKVNGADELDAAIELAGQYDSKILIEQAVLGCEVGCAVLGNSSAF 226 Query: 241 AS-TCGEIVLTSDFYAYDTKYIDEDGAKVV---VPAAIAPEINDKIRAIAVQAYQTLGCA 296 +I L + + E G++ VPA ++ E +I+ A + Y LGC Sbjct: 227 VVGEVDQIRLQHGIFRIHQEAEPEKGSENAVITVPADLSAEERGRIQETAKKIYNALGCR 286 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 G+ARVD+FL +V+NE+NTLPGFT+ S YP++ A G+ + +LI RLI LAL Sbjct: 287 GLARVDMFLQDNGRIVLNEVNTLPGFTSYSRYPRMMAAVGIAFPELIDRLIVLAL 341 >ref|NP_241998.1| (NC_002570) biotin carboxylase [Bacillus halodurans] dbj|BAB04851.1| (AP001511) biotin carboxylase [Bacillus halodurans] Length = 452 Score = 250 bits (639), Expect = 1e-65 Identities = 53/343 (15%), Positives = 117/343 (33%), Gaps = 22/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 + +R ++ + I + ++ + Y D H+ A + + P + Sbjct: 1 MFKKVLIANRGEIAVRIIRTCQKLNIRTVAIYSEADVDSLHVKHADEAFLIGKPPVAESY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 ++ VD I P +G L E+ A + F+G K Sbjct: 61 LKVDTILEVAKQAGVDAIHPG-YGLLSENARFARACVEAGISFIGPSPEVIERMGSKIAA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + ++ AG+ + P + A+ + K G P+ +K + G +G+ V ++E+ Sbjct: 120 RTAMQTAGVPVIPGSDVALADE--EEAVHLARKFGYPVMLKASAGGGGIGMQLVRNDEEM 177 Query: 205 AIAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A +F D + +E+ + R IE + + + E Sbjct: 178 RKAFAGNQKRATSFFGDGTMFLEKAVENPRHIEVQIAADHHGHVVHLWERD--CSIQRRH 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E + + +KI +AV+A + + + V+ + E + E+N Sbjct: 236 QKVVEE-----APSPFVDEALREKIGQLAVKAAKAIDYRNLGTVECLVDGEKNIYFLEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P + +G+ + + +A Sbjct: 291 TRLQVEH----PVTEEITGIDLVEWQLLIAAGEQLPYAQHEIP 329 >ref|NP_385425.1| (NC_003047) PROBABLE BIOTIN CARBOXYLASE PROTEIN [Sinorhizobium meliloti] emb|CAC45898.1| (AL591786) PROBABLE BIOTIN CARBOXYLASE PROTEIN [Sinorhizobium meliloti] Length = 449 Score = 250 bits (639), Expect = 1e-65 Identities = 59/342 (17%), Positives = 113/342 (32%), Gaps = 24/342 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 I + +R ++ L + + ++ + + D H+ L + + P + Sbjct: 3 MISKILIANRGEIALRVLRACKELGIATVAVHSTADSDAMHVRLADESVCIGPPPSRESY 62 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + D + P +G L E+ +L + F+G DK Sbjct: 63 LNIHQIVAACEITGADAVHPG-YGFLSENAKFADILDAHGITFIGPTAEHIRLMGDKITA 121 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K+ + G+ + P + E+ ++G P+ +K G G+ +EE+ Sbjct: 122 KKTAEELGIPVVPGSDGEVR---PENALEIARQIGFPVLIKATAGGGGRGMKVARTEEEL 178 Query: 205 AIAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 AV A + V +E+ + K R IE V+G+ A GE Sbjct: 179 ENAVATARSEAAAAFGNDAVYMEKFLGKPRHIEIQVVGDGEGNAIHLGERD--CSLQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K +E A+ E KI + A + L G ++ E E+N Sbjct: 237 QKVWEE-----ANSPALNVEQRMKIGQVCADAMKKLKYRGAGTIEFLY-ENGEFYFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 T + P +G+ R+ A ++ Sbjct: 291 TRLQVEH----PITEAITGIDLVHEQIRVASGAGLSAKQEDI 328 >ref|NP_388337.1| (NC_000964) D-alanyl-D-alanine ligase A [Bacillus subtilis] sp|P96612|DDL_BACSU D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||D69613 D-alanine--D-alanine ligase (EC 6.3.2.4) A ddlA - Bacillus subtilis dbj|BAA19293.1| (AB001488) PROBABLE D-ALANINE--D-ALANINE LIGASE A [Bacillus subtilis] emb|CAB12263.1| (Z99106) D-alanyl-D-alanine ligase A [Bacillus subtilis] Length = 354 Score = 250 bits (639), Expect = 1e-65 Identities = 152/357 (42%), Positives = 217/357 (60%), Gaps = 8/357 (2%) Query: 10 FGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIAL 69 +GGKSAEH VSLQ+A ++ A++ +FD+ + I ++G+W ++ Sbjct: 2 YGGKSAEHNVSLQTALAVIKALNTEKFDIHPIYITEKGEWVRGARLTEPVSNVKMLQFEQ 61 Query: 70 RPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVG 129 SA P ++ + Q +DV+FP++HG GEDG++QGML + N+P+VG Sbjct: 62 GGSA----FSPAALNQEMFPQEASQQNEAIDVVFPLLHGPNGEDGTIQGMLELLNIPYVG 117 Query: 130 SDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRH---NISFAEVESKLGLPLFVKP 186 + VLAS+A MDK V K L GL A + + + S EVE +LG P FVKP Sbjct: 118 NGVLASSAGMDKVVMKHLFAQVGLAQAKYAAFLKKDWTRSPKESCEEVEQELGYPCFVKP 177 Query: 187 ANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTCGE 246 AN GSSVG+SK + E+ A +LAF++D KV+VE+GI GREIE VLGND+P+ S GE Sbjct: 178 ANLGSSVGISKCRNREELQKAFELAFQYDRKVVVEEGINGREIEIGVLGNDDPKCSVVGE 237 Query: 247 IVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT 306 I +DFY Y KY D D ++ PA + E I +A++A++ + +G+ R D FLT Sbjct: 238 IAPKTDFYDYKAKYEDGDTDLMI-PAIVTDEEYATISDMAIKAFKAIDGSGLVRADFFLT 296 Query: 307 PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALKTT 363 + EV+INE+NT+PGFT SM+P LW+ +G+ Y DLI +L+ELA ERHA +K T Sbjct: 297 ADGEVLINEVNTMPGFTPFSMFPLLWKEAGVEYADLIEQLVELAKERHAEKQLIKHT 353 >pdb|1E4E|A Chain A, D-Alanyl-D-Lacate Ligase Length = 343 Score = 249 bits (637), Expect = 2e-65 Identities = 128/356 (35%), Positives = 199/356 (54%), Gaps = 20/356 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I I+K +++ + +GI K G W + + Sbjct: 1 MNRIKVAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLID-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 ++ S P K H L+ + + VDV F +HG GEDGS+QG+ Sbjct: 61 NEN---------CYSAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +PFVG D+ +SA CMDK +T + ++AG+ F + + +R V + Sbjct: 112 FELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRP------VAATFT 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GV KV S ++ A++ A ++D K+++EQ + G E+ CAVLGN Sbjct: 166 YPVFVKPARSGSSFGVKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAA 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVV---VPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L + + E G++ VPA ++ E +I+ + Y+TLGC Sbjct: 226 LVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETVKKIYKTLGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 G+ARVD+FL +V+NE+NTLPGFT+ S YP++ A+G+ +LI RLI LAL Sbjct: 286 RGLARVDMFLQDNGRIVLNEVNTLPGFTSYSRYPRMMAAAGISLPELIDRLIVLAL 341 >gb|AAF57199.1| (AE003779) CG2118 gene product [Drosophila melanogaster] Length = 684 Score = 249 bits (637), Expect = 2e-65 Identities = 52/346 (15%), Positives = 109/346 (31%), Gaps = 23/346 (6%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-H 83 + I + +R ++ I + V + + + H L + + + Sbjct: 25 RPISKILISNRGEIACRVIRTARKLGVRTVAVFSDPDEKSMHTQLADESYRVGEAASSAS 84 Query: 84 EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + + I P +G L E + + + F+G A K Sbjct: 85 YLRGERILDIAKRSGAQAIHPG-YGFLSESVEFAELCQREGIIFMGPPSSAIRDMGIKST 143 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 +K ++ AG+ I ++ + K+G PL +K G G+ + Sbjct: 144 SKAIMAAAGVPIINGYHGD--DQSDECLQREADKIGFPLMIKAVRGGGGKGMRIAEKPDD 201 Query: 204 YAIAVDLAF------EFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 + A++ A D V++E+ + R +E V + A E Sbjct: 202 FLTALNSARTESEKSFGDSSVLLERYVRSPRHVEVQVFADQYGDAVYLWERD--CSVQRR 259 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTP-ENEVVINE 315 K I+E ++ ++ ++ AV+A + +G G V+ L + E Sbjct: 260 HQKIIEE-----APAPGLSEDLRRELGEAAVRAAKAVGYVGAGTVEFILDKEDLSFHFME 314 Query: 316 INTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALK 361 +NT + P +G + R+ + Sbjct: 315 MNTRLQVEH----PITEMITGTDLVEWQIRIAAGEPLPLKQSEITR 356 >ref|NP_371638.1| (NC_002758) pyruvate carboxylase [Staphylococcus aureus subsp. aureus Mu50] ref|NP_374232.1| (NC_002745) pyruvate carboxylase [Staphylococcus aureus subsp. aureus N315] dbj|BAB42211.1| (AP003132) pyruvate carboxylase [Staphylococcus aureus subsp. aureus N315] dbj|BAB57276.1| (AP003361) pyruvate carboxylase [Staphylococcus aureus subsp. aureus Mu50] Length = 1150 Score = 249 bits (636), Expect = 3e-65 Identities = 52/335 (15%), Positives = 104/335 (30%), Gaps = 24/335 (7%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA--QVPGK 82 K I + +R ++ + + +S + Y H + + P + Sbjct: 2 KQIKKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAE 61 Query: 83 HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKD 142 + + VD I P +G L E+ + F+G + DK Sbjct: 62 SYLNIERIIDVAKQANVDAIHPG-YGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKV 120 Query: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEE 202 + A L + P E + G PL +K + G G+ V E Sbjct: 121 KARTTAIKADLPVIPGTDGPIK--SYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREES 178 Query: 203 QYAIAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYA 255 + A A + +V +E+ I + IE V+G+++ E Sbjct: 179 ELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERD--CSVQR 236 Query: 256 YDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINE 315 K ++ V ++P + +I A+Q + + V+ ++ + E E Sbjct: 237 RHQKVVE-----VAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSGD-EFFFIE 290 Query: 316 INTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 +N + +G+ + A Sbjct: 291 VNPRVQVEHT----ITEMVTGIDIVKTQILVAAGA 321 >gb|AAF36803.1|AF155139_2 (AF155139) putative D-alanyl-D-alanine ligase VanE [Paenibacillus popilliae] Length = 343 Score = 249 bits (635), Expect = 4e-65 Identities = 123/355 (34%), Positives = 202/355 (56%), Gaps = 18/355 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +L++ I+FGG S EH+VS++SAK I + ID +++ + +GI + G W + + + Sbjct: 1 MNRLKIAILFGGCSEEHDVSVKSAKEIANNIDTEKYEPIYIGITRSGVWKMCEKPCMDWD 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 ++ L P + ++ G + +D +F ++HG GEDG++QG+ Sbjct: 61 NENCRSAVLSPDKKMHGLLVMRN--------KGYQIQRIDAVFSVLHGKSGEDGAIQGLF 112 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 ++++P+VG DV +SA CMDK +T + ++AG F+ L + + + L Sbjct: 113 ELSSIPYVGCDVQSSAVCMDKSLTYIVAQNAGFGTPEFLILNHGDIPDS------NTLTY 166 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-NP 239 P+FVKPA GSS GV+KV +E++ A++ A ++D KV++EQ + G E+ CAVLGN + Sbjct: 167 PVFVKPARSGSSFGVNKVNNEDELDAAIETARQYDSKVLIEQAVPGLEVGCAVLGNGTDL 226 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDG---AKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 +I L+ + + E G A V+VPA ++ E KI+ A Y+ LGC Sbjct: 227 IVGEVDQISLSHGIFRIHQEDQPEKGSENAVVLVPANLSAEKRIKIQETAKAIYKALGCK 286 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 G++RVD+FL +++NE+NTLPGFT S YP++ A+G+ + LI I LAL Sbjct: 287 GLSRVDMFLQENGRIILNEVNTLPGFTAYSRYPRMMAAAGMTLSGLIDHCITLAL 341 >gb|AAG45427.1|AF317651_4 (AF317651) pyruvate carboxylase ATP-binding subunit PYCA [Methanosarcina barkeri] Length = 493 Score = 249 bits (635), Expect = 4e-65 Identities = 50/342 (14%), Positives = 107/342 (30%), Gaps = 23/342 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HE 84 + +R ++ + + + +S + + A + P Sbjct: 1 MFKKVLIANRGEIAIRVMRACRELGISTVAVCSEADKNALFAKYADEAYLIGPAPSSQSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + I P +G L E+ + F+G A K Sbjct: 61 LNMEAILAVAKNTGAEAIHPG-YGFLSENPVFAKRCEEEGIVFIGPPSHVIAEMGSKIRA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + L+ AG+ + P A + ++ ++G P+ +K + G +G+ V S +++ Sbjct: 120 RNLMVKAGVPVVPGT--KDAVEDPVEAVKIAEEIGYPVLIKASAGGGGIGMKVVNSSDEF 177 Query: 205 AIAVDLA------FEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A+ D V +E+ + + R IE +L + Sbjct: 178 ATALSSTRQMAGSAFGDSSVFIEKYVEEPRHIEIQILADGYGNTIYLS--DRECSIQRRH 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E + PE+ K+ AV+ +T+G V+ + E+N Sbjct: 236 QKLIEE-----APSPIMTPELRAKMGEAAVRVAKTIGYVNAGTVEFLYSK-GNFYFLEVN 289 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 T + +G+ R+ ++ Sbjct: 290 TRLQVEHG----ITEMVTGIDIVREQLRIAWGKKLEFKQEDI 327 >gb|AAG37026.1|AF277571_3 (AF277571) D-alanine:D-lactate ligase [Enterococcus faecium] Length = 343 Score = 248 bits (634), Expect = 5e-65 Identities = 120/357 (33%), Positives = 198/357 (54%), Gaps = 18/357 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M KL++ ++FGG S EH+VS++SA + I+K ++ +GI K G W + D Sbjct: 1 MYKLKIAVLFGGCSEEHDVSVKSAMEVAANINKEKYQPFYIGITKSGAWKLCDKPCRDWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + P + K G VDV+ P++HG GEDG++QG+L Sbjct: 61 NYAGYPAVISPDRRIHGLLIQKDG--------GYESQPVDVVLPMIHGKFGEDGTIQGLL 112 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 ++ +P+VG D+ +S CMDK + ++++AG+ + F L + + L Sbjct: 113 ELSGIPYVGCDIQSSVICMDKSLAYMVVKNAGIEVPGFRVLQKGDSLE------AETLSY 166 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+FVKPA GSS GV+KV E+ AV A ++D K++VE+ + G E+ CA+LGN N Sbjct: 167 PVFVKPARSGSSFGVNKVCRAEELQAAVTEAGKYDSKILVEEAVSGSEVGCAILGNGNDL 226 Query: 241 ASTCGEIVL-TSDFYAYDTKYIDEDGAKVV---VPAAIAPEINDKIRAIAVQAYQTLGCA 296 + + + F+ + E G++ VPAA+ E+ ++I+ A + Y+ LGC Sbjct: 227 ITGEVDQIELKHGFFKIHQEAQPEKGSENAVIRVPAALPDEVREQIQETAKKIYRVLGCR 286 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+AR+D+FL + +V+NE+NT+PGFT+ S YP++ A+G ++++ RLI L+L R Sbjct: 287 GLARIDLFLREDGSIVLNEVNTMPGFTSYSRYPRMMTAAGFTLSEILDRLIGLSLRR 343 >pdb|1E4E|B Chain B, D-Alanyl-D-Lacate Ligase Length = 343 Score = 248 bits (632), Expect = 8e-65 Identities = 128/356 (35%), Positives = 199/356 (54%), Gaps = 20/356 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I I+K +++ + +GI K G W + + Sbjct: 1 MNRIKVAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLID-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 ++ S P K H L+ + + VDV F +HG GEDGS+QG+ Sbjct: 61 NEN---------CYSAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGL 111 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ +PFVG D+ +SA CMDK +T + ++AG+ F + + +R V + Sbjct: 112 FELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRP------VAATFT 165 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-N 238 P+FVKPA GSS GV KV S ++ A++ A ++D K+++EQ + G E+ CAVLGN Sbjct: 166 YPVFVKPARSGSSFGVKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAA 225 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVV---VPAAIAPEINDKIRAIAVQAYQTLGC 295 +I L + + E G++ VPA ++ E +I+ + Y+TLGC Sbjct: 226 LVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETVKKIYKTLGC 285 Query: 296 AGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 G+ARVD+FL +V+NE+NTLPGFT+ S YP++ A+G+ +LI RLI LAL Sbjct: 286 RGLARVDMFLQDRGRIVLNEVNTLPGFTSYSRYPRMMAAAGISLPELIDRLIVLAL 341 >pir||T35363 D-alanine--D-alanine ligase (EC 6.3.2.4) A SC66T3.06 [similarity] - Streptomyces coelicolor emb|CAB45462.1| (AL079348) putative D-alanine:D-lactate ligase [Streptomyces coelicolor A3(2)] Length = 346 Score = 248 bits (632), Expect = 9e-65 Identities = 133/355 (37%), Positives = 196/355 (54%), Gaps = 18/355 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +L+VGIVFGG S EH VS++SA+ + +D ++ +GI K G W + D Sbjct: 1 MARLKVGIVFGGSSEEHAVSVKSAQEVARNLDTEKYQPFFVGITKDGAWRLCDGPGQDWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 D + L P + + + +DV+ P++HGTLGEDG+ QG+L Sbjct: 61 NGDCRPVVLSPDRSVHGLLVLEQGQ--------YRSVRLDVVLPVLHGTLGEDGATQGLL 112 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 ++ +P+VG DV +SA CMDK + + R AG+ F T+T + +L Sbjct: 113 ELSGIPYVGCDVQSSALCMDKSLAYVVARSAGIATPDFWTVTGDETID------PGRLTY 166 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN-P 239 P+FVKPA GSS GVSKV E A AV+ A +D KV++E + G E+ CA+LGND Sbjct: 167 PVFVKPARSGSSFGVSKVCRPEDLATAVESARRYDTKVLIEAAVVGSEVGCAILGNDPDL 226 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKV---VVPAAIAPEINDKIRAIAVQAYQTLGCA 296 I L+ F+ + E+G++ VVPA I E ++ A Y+ LGC Sbjct: 227 IVGEVDRIALSHGFFRIHQEEQPENGSENSTPVVPADIPTEKRSLVQETAKAVYRALGCR 286 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 G++RVD+FL + EVV+NE+NTLPG T+ S YP++ A+GL +++I R + LAL Sbjct: 287 GLSRVDMFLKEDGEVVLNEVNTLPGMTSYSRYPRMMAAAGLPLSEVIDRTLSLAL 341 >dbj|BAA12072.1| (D83706) pyruvate carboxylase [Geobacillus stearothermophilus] Length = 1147 Score = 248 bits (632), Expect = 1e-64 Identities = 52/334 (15%), Positives = 104/334 (30%), Gaps = 24/334 (7%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV--PGK 82 + I + +R ++ + + + + Y H A + + P + Sbjct: 4 RRIRKVLVANRGEIAIRVFRACTELGIRTVAIYSKEDVGSYHRYKADEAYLVGEGKKPIE 63 Query: 83 HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKD 142 + VD I P +G E+ R + F G + DK Sbjct: 64 AYLDIEGIIEIAKAHDVDAIHPG-YGFFSENIQFAKRCREEGIIFFGPNENHLDMFGDKV 122 Query: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEE 202 + +AG+ + P G P+ +K A G G+ V S+ Sbjct: 123 KARHAAVNAGIPVIPGSDGPV--DGLEDVVAFAEAHGYPIIIKAALGGGGRGMRFVRSKS 180 Query: 203 QYAIAVDL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYA 255 + A + A +V VE+ I + IE +LG+ E Sbjct: 181 EVKEAFERAKSEAKAAFGSDEVYVEKLIENPKHIEVQILGDYEGNIVHLYERD--CSVQR 238 Query: 256 YDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINE 315 K ++ V +++ E+ +I AVQ +++G V+ ++ + E E Sbjct: 239 RHQKVVE-----VAPSVSLSDELRQRICEAAVQLMRSVGYVNAGTVEFLVSGD-EFYFIE 292 Query: 316 INTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 +N + +G+ + + Sbjct: 293 VNPRIQVEHT----ITEMITGIDIVQSQILIADG 322 >sp|Q06893|VANB_ENTFC VANCOMYCIN B-TYPE RESISTANCE PROTEIN VANB (VANB LIGASE) (D-ALANINE--D-LACTATE LIGASE) gb|AAC43217.1| (U00456) D-alanine:D-alanine ligase-related protein induced by vancomycin [Enterococcus faecalis] gb|AAB05627.1| (U35369) D-Ala:D-Lac ligase [Enterococcus faecalis] prf||2007289A D-Ala lactate ligase [Enterococcus faecalis] Length = 342 Score = 247 bits (630), Expect = 2e-64 Identities = 126/357 (35%), Positives = 198/357 (55%), Gaps = 19/357 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K++V I+FGG S EH+VS++SA I I+ +FD +GI K G W + Sbjct: 1 MNKIKVAIIFGGCSEEHDVSVKSAIEIAANINTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 D P + + K +DV FP++HG GEDG++QG+ Sbjct: 61 -ADSLPAIFSPDRKTHGLLVMKE--------REYETRRIDVAFPVLHGKCGEDGAIQGLF 111 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 112 ELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIEKGDKPE------ARTLTY 165 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-NP 239 P+FVKPA GSS GV+KV S E+ A++ A ++D K+++EQ I G E+ CAV+GN+ + Sbjct: 166 PVFVKPARSGSSFGVTKVNSTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDDL 225 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVV---PAAIAPEINDKIRAIAVQAYQTLGCA 296 +I L+ + + E G++ + PA I E ++++ A + Y+ LGC Sbjct: 226 IVGEVDQIRLSHGIFRIHQENEPEKGSENAMIIVPADIPVEERNRVQETAKKVYRVLGCR 285 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+ARVD+FL + +V+NE+NTLPGFT+ S YP++ A+G+ LI LI LA+ER Sbjct: 286 GLARVDLFLQEDGGIVLNEVNTLPGFTSYSRYPRMAAAAGITLPALIDSLITLAIER 342 >gb|AAF71281.1|AF253562_5 (AF253562) ligase [Enterococcus faecalis] Length = 349 Score = 246 bits (628), Expect = 2e-64 Identities = 131/347 (37%), Positives = 207/347 (58%), Gaps = 3/347 (0%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M+ ++ ++FGG S E+EVSLQSA + + I+ ++FD++ +GI + G+W+ + Sbjct: 1 MQNKKIAVIFGGNSTEYEVSLQSASAVFENINTNKFDIIPIGITRSGEWYHYTGEKEKIL 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + + ++Q L A + + VD++FP++HG GE+G+LQG+ Sbjct: 61 NNTWFEDSKNLCPVVVSQNRSVKGF-LEIASDKYRIIKVDLVFPVLHGKNGENGTLQGIF 119 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 +A +P VG D L+SA CMDKD +L+ AG+++ +T R N + E+E+ L Sbjct: 120 ELAGIPVVGCDTLSSALCMDKDRAHKLVSLAGISVPKSVTFKRFNE-EAAMKEIEANLTY 178 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 PLF+KP GSS G++KV +++ A++LAFE D +VIVE+ I G E+ CAVLG D Sbjct: 179 PLFIKPVRAGSSFGITKVIEKQELDAAIELAFEHDTEVIVEETINGFEVGCAVLGIDELI 238 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 EI L+S F+ Y KY +K+ +PA I E +I+ AV Y+ LGC+G +R Sbjct: 239 VGRVDEIELSSGFFDYTEKYT-LKSSKIYMPARIDAEAEKRIQEAAVTIYKALGCSGFSR 297 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 VD+F TP E+V NE+NT+PGFT+ S YP + + GL ++ ++ +LI Sbjct: 298 VDMFYTPSGEIVFNEVNTIPGFTSHSRYPNMMKGIGLSFSQMLDKLI 344 >ref|NP_266497.1| (NC_002662) D-alanine-D-alanine ligase (EC 6.3.2.4) [Lactococcus lactis subsp. lactis] sp|Q9CIL5|DDL_LACLA D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAK04439.1|AE006271_2 (AE006271) D-alanine-D-alanine ligase (EC 6.3.2.4) [Lactococcus lactis subsp. lactis] Length = 349 Score = 246 bits (628), Expect = 3e-64 Identities = 126/361 (34%), Positives = 203/361 (55%), Gaps = 15/361 (4%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K + +++GG+SAE EVS+ SA++++ A++ SRF V I K G++ + Sbjct: 1 MSKETLILLYGGRSAEREVSVLSAESVMRAVNYSRFVVKTYFITKGGEFIKTQEFTDKPA 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 ++ + V+FP++HG +GEDGS+QG L Sbjct: 61 EEEKLLTNDLAESYP-------------KISPAAIYEKAAVVFPVLHGPMGEDGSIQGFL 107 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + L +VG ++L++++ MDK + K + G+ P++ EV KL Sbjct: 108 EILRLAYVGPNILSASSTMDKLLAKHVFEAVGVPQVPYVAAFADENQGEIAQEVVEKLEF 167 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+FVKPAN GSSVG+SKV A+ A+++D++V++EQG+ REIECAVLGN++ Sbjct: 168 PVFVKPANMGSSVGISKVDDLADLQPALSEAYKYDNRVVIEQGVDAREIECAVLGNNSDV 227 Query: 241 -ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 A+ GE+V +FY Y++KYID ++ +PA + ++ K++ A++AY+ + G++ Sbjct: 228 SATLPGEVVKDVEFYDYNSKYIDNK-IQMDIPAKVPADLAQKMQEYAIKAYKAVNGTGLS 286 Query: 300 RVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 R D F+T + V +NEIN +PGFT SMYP LW+ GL Y+DLI +L++LA E Sbjct: 287 RCDFFVTKDGNVYLNEINAIPGFTQWSMYPLLWENMGLSYSDLIEKLVDLAKETFETREN 346 Query: 360 L 360 Sbjct: 347 H 347 >ref|NP_283408.1| (NC_003116) putative acetyl-CoA carboxylase biotin carboxylase component [Neisseria meningitidis Z2491] pir||H81978 probable acetyl-CoA carboxylase (EC 6.4.1.2) biotin carboxylase chain NMA0596 [similarity] - Neisseria meningitidis (group A strain Z2491) emb|CAB83886.1| (AL162753) putative acetyl-CoA carboxylase biotin carboxylase component [Neisseria meningitidis Z2491] Length = 453 Score = 245 bits (626), Expect = 4e-64 Identities = 51/343 (14%), Positives = 108/343 (30%), Gaps = 22/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HE 84 + + +R ++ L + + ++ + + D H+ L + + Sbjct: 1 MLKKVLIANRGEIALRVLRACREMGIATVAVHSEADKDSLHVKLADESVCIGPAASAQSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + D + P +G L E+ + + F+G DK Sbjct: 61 LNVPAIIAAAEVSCADAVHPG-YGFLAENADFAEQVEQSGFTFIGPKPDTIRLMGDKVSA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K + AG+ P + ++ K+G P+ +K + G G+ V +E Sbjct: 120 KHAMIAAGVPCVPGSDGALPDDGEE-ILKIADKIGYPVIIKASGGGGGRGMRVVEKKEDL 178 Query: 205 ------AIAVDLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A + V +E+ ++ R +E V+ +++ A E Sbjct: 179 LQSVEMTKAEAGAAFGNPMVYMERYLQRPRHVEIQVIADEHGNAVYLAERD--CSLQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E I + KI A + +G G + + E E+N Sbjct: 237 QKVIEE-----APAPFITEKERAKIGKACADACKRIGYRGAGTFEFLY-EDGEFFFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P +G+ R+ ++ + Sbjct: 291 TRVQVEH----PVTELITGVDIVQEQLRIAAGLPLQYKQKDIQ 329 >emb|CAB09721.1| (Z97025) pyruvate carboxylase [Bacillus subtilis] Length = 384 Score = 245 bits (626), Expect = 5e-64 Identities = 56/348 (16%), Positives = 109/348 (31%), Gaps = 24/348 (6%) Query: 23 SAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV--P 80 S ++I + +R ++ + + ++ + Y H A + + P Sbjct: 2 SQQSIQKVLVANRGEIAIRIFRACTELNIRTVAVYSKEDSGSYHRYKADEAYLVGEGKKP 61 Query: 81 GKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMD 140 + + VD I P +G L E+ + F+G D Sbjct: 62 IDAYLDIEGIIDIAKRNKVDAIHPG-YGFLSENIHFARRCEEEGIVFIGPKSEHLDMFGD 120 Query: 141 KDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTS 200 K + AG+ + P + + G P+ +K + G G+ V S Sbjct: 121 KVKAREQAEKAGIPVIPGSDG--PAETLEAVEQFGQANGYPIIIKASLGGGGRGMRIVRS 178 Query: 201 EEQYAIAVDL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDF 253 E + A + A + +V VE+ I + IE V+G+ E Sbjct: 179 ESEVKEAYERAKSEAKAAFGNDEVYVEKLIENPKHIEVQVIGDKQGNVVHLFERD--CSV 236 Query: 254 YAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVI 313 K I+ V +++PE+ D+I AV + + V+ + NE Sbjct: 237 QRRHQKVIE-----VAPSVSLSPELRDQICEAAVALAKNVNYINAGTVEFLV-ANNEFYF 290 Query: 314 NEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALK 361 E+N + +G+ + + N + Sbjct: 291 IEVNPRVQVEHT----ITEMITGVDIVQTQILVAQGHSLHSKKVNIPE 334 >ref|NP_539717.1| (NC_003317) PROPIONYL-COA CARBOXYLASE ALPHA CHAIN, MITOCHONDRIAL [Brucella melitensis] gb|AAL51981.1| (AE009521) PROPIONYL-COA CARBOXYLASE ALPHA CHAIN, MITOCHONDRIAL [Brucella melitensis] Length = 667 Score = 245 bits (625), Expect = 6e-64 Identities = 59/341 (17%), Positives = 118/341 (34%), Gaps = 22/341 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HE 84 I + +R ++ I + ++ + Y + H+ + A + P Sbjct: 1 MIKKILIANRGEIACRVIKSAKKKGIATVAVYSDADRNALHVKMADEAVHIGPAPSNQSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D + P +G L E+ L+ AN+ F+G V A A DK + Sbjct: 61 IVIDKILAAIKEIGADAVHPG-YGFLSENPRFAEALKAANVTFIGPPVNAIDAMGDKITS 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K+L +AG++ P + + +G P+ +K + G G+ ++E+ Sbjct: 120 KKLAAEAGVSTVPGHMGLIEDA--DEAVRIAGSIGYPVMIKASAGGGGKGMRIAWNDEEA 177 Query: 205 AIAVDLAF------EFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 L+ D ++ +E+ + + R IE VLG+ + GE + Sbjct: 178 REGFQLSRNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDQHGNVVYLGER--ECSIQRRN 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E + + AV + +G V+ + E+N Sbjct: 236 QKVIEE-----APSPFLDEATRKAMGEQAVALAKAVGYYSAGTVEFIVDGNRNFYFLEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 T + P +G+ + + R+ R A + Sbjct: 291 TRLQVEH----PVTELITGIDLVEEMIRVASGEKLRFAQAD 327 >ref|NP_277017.1| (NC_000916) biotin carboxylase [Methanothermobacter thermautotrophicus] sp|O27939|PYCA_METTH PYRUVATE CARBOXYLASE SUBUNIT A (PYRUVIC CARBOXYLASE A) pir||A69123 biotin carboxylase - Methanobacterium thermoautotrophicum (strain Delta H) gb|AAB86377.1| (AE000942) biotin carboxylase [Methanothermobacter thermautotrophicus] Length = 491 Score = 244 bits (624), Expect = 7e-64 Identities = 52/343 (15%), Positives = 117/343 (33%), Gaps = 23/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA-QVPGKHE 84 + +R ++ + + + + + Y + A + P + Sbjct: 1 MFSKILVANRGEIAIRVMRACRELGIKSVAVYSEADKNALFTRYADEAYEIGKPAPSQSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 ++ + I P +G L E+ L + +G A DK + Sbjct: 61 LRIDRILEVAEKAGAEAIHPG-YGFLAENPRLGEECEKQGIKLIGPKGSVIEAMGDKITS 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K+L++ AG+ + P ++ A + +G P+ +K + G +G+ V E++ Sbjct: 120 KKLMKKAGVPVIPGTDQGVSDP--DEAARIADSIGYPVIIKASAGGGGIGMRAVYEEDEL 177 Query: 205 AIAVDLA------FEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A++ D V +E+ ++ R IE V+ +++ Sbjct: 178 IRAMESTQSVAASAFGDPTVYIEKYLERPRHIEFQVMADESGNVIHLA--DRECSIQRRH 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E + PE+ +++ + AV+A + +G V+ + + E+N Sbjct: 236 QKLIEE-----APSPIMTPELRERMGSAAVKAAEYIGYENAGTVEFLYS-NGDFYFLEMN 289 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P +G+ R+ R + Sbjct: 290 TRIQVEH----PITEVITGVDLVKEQIRVASGEELRFTQKDIN 328 >gb|AAK60339.1| (AY034410) biotin carboxylase [Brassica napus] Length = 535 Score = 244 bits (623), Expect = 9e-64 Identities = 53/338 (15%), Positives = 112/338 (32%), Gaps = 20/338 (5%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ + I + + + Y D H+ L A + + P + +I Sbjct: 74 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADEAVCIGEAPSNQSYLVI 133 Query: 89 DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLL 148 + + +G E+ M R + F+G + + DK + + Sbjct: 134 PNVLSAAISRGCTMLHPGYGFHSENALFVEMCREHRINFIGPNPDSIRVMGDKSTARETM 193 Query: 149 RDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV 208 ++AG+ P ++ +++G P+ +K G G+ ++ + Sbjct: 194 KNAGVPTVPGSDGLLK--STEEGVKLANEIGFPVMIKATAGGGGRGMRLANEPSEFVKLL 251 Query: 209 D------LAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYI 261 A + V +E+ + R IE +L + GE + K + Sbjct: 252 QAAKSEAAAAFGNDGVYLEKYVQNPRHIEFQILADKFGNVVHFGERD--CSIQRRNQKLL 309 Query: 262 DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG 321 +E A+ PE+ + AV A ++G G+ V+ L E+NT Sbjct: 310 EE-----APSPALTPELRKAMGDAAVAAAASIGYVGVGTVEFLLDERGSFYFMEMNTRIQ 364 Query: 322 FTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 + P + + R+ R+ D Sbjct: 365 VEH----PVTEMIYSVDLIEEQIRVAMGEKLRYTQDEI 398 >gb|AAF72363.1|AF192329_24 (AF192329) VanB [Enterococcus faecalis] Length = 342 Score = 244 bits (622), Expect = 1e-63 Identities = 125/357 (35%), Positives = 198/357 (55%), Gaps = 19/357 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I I+ +FD +GI K G W + Sbjct: 1 MNRIKVAIIFGGCSEEHDVSVKSAIEIAANINTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 D L P + + K +DV FP++HG GEDG++QG+ Sbjct: 61 -ADSLPAILSPDRKTHGLLVMKESE--------YETRRIDVAFPVLHGKCGEDGAIQGLF 111 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 112 ELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPE------AGALTY 165 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-NP 239 P+FVKPA GSS GV+KV E+ A++ A ++D K+++EQ I G E+ CAV+GN+ + Sbjct: 166 PVFVKPARSGSSFGVTKVNGTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDDL 225 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVV---PAAIAPEINDKIRAIAVQAYQTLGCA 296 +I L+ + + E G++ + PA I E ++++ A + Y+ LGC Sbjct: 226 IVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCR 285 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+ARVD+FL + +V+NE+NTLPGFT+ S YP++ A+G+ LI LI LAL+R Sbjct: 286 GLARVDLFLQEDGGIVLNEVNTLPGFTSYSRYPRMVAAAGITLPALIDSLITLALKR 342 >ref|NP_274857.1| (NC_003112) acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis MC58] pir||F81033 acetyl-CoA carboxylase, biotin carboxylase NMB1861 [imported] - Neisseria meningitidis (group B strain MD58) gb|AAF42195.1| (AE002536) acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis MC58] Length = 453 Score = 243 bits (621), Expect = 1e-63 Identities = 51/343 (14%), Positives = 108/343 (30%), Gaps = 22/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HE 84 + + +R ++ L + + ++ + + D H+ L + + Sbjct: 1 MLKKVLIANRGEIALRVLRACREMGIATVAVHSEADKDSLHVKLADESVCIGPAASAQSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + D + P +G L E+ + + F+G DK Sbjct: 61 LNVPAIIAAAEVSCADAVHPG-YGFLAENADFAEQVEQSGFTFIGPKPDTIRLMGDKVSA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K + AG+ P + ++ K+G P+ +K + G G+ V +E Sbjct: 120 KHAMIAAGVPCVPGSDGALPDDGEE-ILKIADKVGYPVIIKASGGGGGRGMRVVEKKEDL 178 Query: 205 ------AIAVDLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A + V +E+ ++ R +E V+ +++ A E Sbjct: 179 LQSVEMTKAEAGAAFGNPMVYMERYLQRPRHVEIQVIADEHGNAIYLAERD--CSLQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E I + KI A + +G G + + E E+N Sbjct: 237 QKVIEE-----APAPFITEKERAKIGNACADACKRIGYRGAGTFEFLY-EDGEFFFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P +G+ R+ ++ + Sbjct: 291 TRVQVEH----PVTELITGVDIVQEQLRIAAGLPLQYKQKDIQ 329 >ref|NP_485023.1| (NC_003272) D-alanyl-D-alanine ligase [Nostoc sp. PCC 7120] dbj|BAB72937.1| (AP003584) D-alanyl-D-alanine ligase [Nostoc sp. PCC 7120] Length = 364 Score = 243 bits (620), Expect = 2e-63 Identities = 158/363 (43%), Positives = 224/363 (61%), Gaps = 13/363 (3%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAI----DKSRFDVVLLGIDKQGQWHVSDASNYLL 59 +RVG++FGG+S EHEVS+ SA+ I A+ + S+++++ I K G+W +A +L Sbjct: 1 MRVGLLFGGRSGEHEVSISSARAIASALSAGENASKYEILPFYIHKDGRWLAGEAPQQVL 60 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 + P + S+ + + + L Q+ + VDV FPI+HG GEDG++QG+ Sbjct: 61 KSGAPL-LESSNSSPAENNLVNSQQQTLERWQSPSQVAEVDVWFPILHGPNGEDGTIQGL 119 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRH------NISFAE 173 L + PFVGS VL SA MDK K AGL + +TRA E Sbjct: 120 LTLMQTPFVGSGVLGSALGMDKIAMKMAFEQAGLPQVKYKAVTRAQIWSNPCVFPKLCDE 179 Query: 174 VESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAV 233 +E+ LG P FVKPAN GSSVG+SKV S ++ A+D A +D ++I+E G+ RE+ECAV Sbjct: 180 IEASLGYPCFVKPANLGSSVGISKVRSRQELEDALDNAANYDRRIIIEAGVAAREVECAV 239 Query: 234 LGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 LGND PQAST GEI SDFY Y+TKY A +++PA I +I+ +I+ +A+QA+ + Sbjct: 240 LGNDQPQASTVGEITFNSDFYDYETKYTAGK-ADLLIPAIIPDDISRQIQNMALQAFAAV 298 Query: 294 GCAGMARVDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 AG+ARVD F EV+INEINTLPGFT SMYP+LW SG+ + +L+ +L++LA+E Sbjct: 299 DAAGLARVDFFYVEATGEVLINEINTLPGFTATSMYPQLWAHSGIPFPELVDKLVQLAIE 358 Query: 353 RHA 355 RH Sbjct: 359 RHN 361 >gb|AAD42184.1|AF130997_5 (AF130997) D-alanine:D-lactate ligase [Enterococcus faecium] Length = 343 Score = 242 bits (618), Expect = 4e-63 Identities = 123/357 (34%), Positives = 203/357 (56%), Gaps = 18/357 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V ++FGG S EH VS++SA I ID ++ +GI K G W + + Sbjct: 1 MFRIKVAVLFGGCSEEHNVSIKSAMEIAANIDTKKYQPYYIGITKSGVWKMCEKPCLEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + P ++ + K G + VDV+FP++HG GEDGS+QG+L Sbjct: 61 QYAGDPVVFSPDRSTHGLLIQKD--------KGYEIQPVDVVFPMIHGKFGEDGSIQGLL 112 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 ++ +P+VG D+ +S CMDK + ++++AG+ + F L +R Sbjct: 113 ELSGIPYVGCDIQSSVICMDKALAYTVVKNAGITVPGFRILQEGDRLET------EDFVY 166 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN-P 239 P+FVKPA GSS GV+KV E+ A++ A ++D K+++E+ + G E+ CA+LGN N Sbjct: 167 PVFVKPARSGSSFGVNKVCKAEELQAAIEEARKYDSKILIEEAVTGSEVGCAILGNGNDL 226 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVV---VPAAIAPEINDKIRAIAVQAYQTLGCA 296 A +I L F+ + E G++ VPAA+ E+ ++I+ A++ Y+ LGC Sbjct: 227 MAGEVDQIELRHGFFKIHQEAQPEKGSENAVIRVPAALPDEVREQIQETAMKIYRILGCR 286 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+AR+D+FL + +V+NE+NT+PGFT+ S YP++ A+G ++++ RLIEL+L R Sbjct: 287 GLARIDLFLREDGCIVLNEVNTMPGFTSYSRYPRMMTAAGFTLSEILDRLIELSLRR 343 >ref|NP_520908.1| (NC_003295) PROBABLE BIOTIN CARBOXYLASE PROTEIN [Ralstonia solanacearum] emb|CAD16494.1| (AL646071) PROBABLE BIOTIN CARBOXYLASE PROTEIN [Ralstonia solanacearum] Length = 456 Score = 242 bits (618), Expect = 4e-63 Identities = 54/341 (15%), Positives = 103/341 (29%), Gaps = 22/341 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 + +R ++ L + + Y + ++ L A + P Sbjct: 1 MFDKILIANRGEIALRIQRACRELGIKTVVVYSEADKEAKYVKLADEAVCIGPAPSPLSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + I P +G L E+ + + F+G DK Sbjct: 61 LNMPAIISAAEVTDAQAIHPG-YGFLSENADFAERVEQSGFTFIGPTPDCIRLMGDKVSA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K+ + +G+ P + K+G P+ +K A G G+ V +E Sbjct: 120 KQAMIKSGVPCVPGSEGALPDDPKE-ILATARKVGYPVIIKAAGGGGGRGMRVVHTEAAL 178 Query: 205 AIAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 AV + +V +E+ + R +E VL + + A GE Sbjct: 179 INAVNMTREEAGRAFGNPEVYMEKFLENPRHVEIQVLADQHRNAIWLGERD--CSMQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E I + ++I A + +G G + E E+N Sbjct: 237 QKVIEE-----APAPHIPRRLIERIGDRCADACKKIGYRGAGTFEFLY-ENGEFYFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 T + P +G+ R+ R + Sbjct: 291 TRVQVEH----PVTEMITGIDIVQEQIRVAANEKLRFRQKD 327 >ref|NP_437988.1| (NC_003078) putative propionyl-CoA carboxylase alpha chain protein [Sinorhizobium meliloti] emb|CAC49848.1| (AL603647) putative propionyl-CoA carboxylase alpha chain protein [Sinorhizobium meliloti] Length = 670 Score = 242 bits (617), Expect = 5e-63 Identities = 58/343 (16%), Positives = 115/343 (32%), Gaps = 22/343 (6%) Query: 24 AKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK- 82 + +R ++ I + + Y D H+ + A + P Sbjct: 2 GHMFKKILIANRGEIACRVIRTTKALGIPTVAVYSDADRDAMHVRMADEAVHIGPSPSSQ 61 Query: 83 HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKD 142 + + D + P +G L E+ + L + F+G V A A DK Sbjct: 62 SYIVIENILAAIRRTGADAVHPG-YGFLSENAAFAEALEKDGVTFIGPPVRAIEAMGDKI 120 Query: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEE 202 +K+L +AG+ P + A + +++G P+ +K + G G+ +E Sbjct: 121 TSKKLAAEAGVFTVPGHMGLIEDA--DEAARIAAEIGFPVMIKASAGGGGKGMRIAWNER 178 Query: 203 QYAIAVDLAF------EFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYA 255 + + D ++ +E+ + + R IE VLG+ + GE Sbjct: 179 EAREGFQSSRNEAKSSFGDDRIFIEKFVTEPRHIEIQVLGDKHGNILYLGER--ECSIQR 236 Query: 256 YDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINE 315 + K I+E + + + AV + +G V+ + E Sbjct: 237 RNQKVIEE-----APSPFLDEKTRRAMGEQAVALAKAVGYHSAGTVEFIVDAGRNFYFLE 291 Query: 316 INTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 +NT + P +GL + + R+ A A + Sbjct: 292 MNTRLQVEH----PVTELVTGLDLVEQMIRVAAGAKLAFAQKD 330 >ref|NP_389706.1| (NC_000964) similar to biotin carboxylase [Bacillus subtilis] pir||E69893 biotin carboxylase homolog yngH - Bacillus subtilis emb|CAA74216.1| (Y13917) yngH [Bacillus subtilis] emb|CAB13707.1| (Z99113) similar to biotin carboxylase [Bacillus subtilis] Length = 444 Score = 241 bits (616), Expect = 6e-63 Identities = 56/344 (16%), Positives = 119/344 (34%), Gaps = 22/344 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV-PGKHE 84 + +R ++ + I + + + Y D H A + + + Sbjct: 1 MFTKVLIANRGEIAMRIIRTCSRLGIKTVAVYSEADKDAPHTKAATEAYLIGESRVSESY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D I P +G L E+ + N+ F+G A K Sbjct: 61 LNIERIIKTAKKAKADAIHPG-YGLLSENSRFAERCKQENIVFIGPSPDIIAKMGSKIEA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 ++ + AG+ + P ++ + + + S++G P+ +K + G +G+ +V +EE Sbjct: 120 RKAMEAAGVPVVPGVSESLGD--IEAACRTASQIGYPVMLKASAGGGGIGMQRVENEEAL 177 Query: 205 AIAVD------LAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A + F D + +E+ I+ R IE +L + + E Sbjct: 178 KKAYEGNKKRAADFFGDGSMYIEKVIEHARHIEVQLLADQHGHTVHLFERD--CSVQRRH 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E + E+ KI AV+A + +G ++ + + E+N Sbjct: 236 QKVIEE-----APSPFVDDELRMKIGQTAVKAAKAIGYTNAGTIEFIVDQKQNFYFLEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALK 361 T + P + +GL + R+ + + + Sbjct: 291 TRLQVEH----PVTEEITGLDLVEQQLRIAAGHTLTFSQKDIQR 330 >ref|NP_248224.1| (NC_000909) biotin carboxylase (accC) [Methanococcus jannaschii] sp|Q58626|PYCA_METJA PYRUVATE CARBOXYLASE SUBUNIT A (PYRUVIC CARBOXYLASE A) pir||D64453 biotin carboxylase (EC 6.3.4.14) - Methanococcus jannaschii gb|AAB99232.1| (U67563) biotin carboxylase (accC) [Methanococcus jannaschii] Length = 501 Score = 241 bits (616), Expect = 7e-63 Identities = 58/341 (17%), Positives = 117/341 (34%), Gaps = 23/341 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKHE 84 + +R ++ + I + + + Y H L A + P K Sbjct: 1 MFNKVLIANRGEIAIRIIRACWELGIKTVAVYSEADKRSLHATLADEAYCIGPAPAAKSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + N VD I P +G L E+ ++ A F+G + A A K Sbjct: 61 LNIDAILNVAEKAKVDAIHPG-YGFLAENAEFARAVKKAGFEFIGPNPDAIEAMGSKINA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K++++ AG+ + P + E+ +G P+ VK + G +G+S S+E+ Sbjct: 120 KKIMKKAGVPLIPGSEGAIED--IDEAIEIAEAIGFPVVVKASAGGGGMGMSVAYSKEEL 177 Query: 205 AIAVDLA------FEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 ++ A D V +E+ + R IE +LG+ + G Sbjct: 178 KEVIESARNIAKSAFGDPTVFIEKYLENPRHIEIQLLGDKHGNIIHLG--DRECSIQRRH 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E + E+ +++ A++A + + V+ E+N Sbjct: 236 QKLIEE-----APSPIMTEELRERMGEAAIKAGKAINYDSAGTVEFLY-ENGNFYFLEMN 289 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 T + Q +G+ + ++ ++ Sbjct: 290 TRIQVEHT----VTEQVTGIDLVKAMIKIAAGEELTLKQED 326 >emb|CAB64487.1| (AJ243059) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 241 bits (616), Expect = 7e-63 Identities = 130/358 (36%), Positives = 204/358 (56%), Gaps = 14/358 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A++ +RF V I + G + + + + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVNYNRFTVKTFFISQSGDFIKTQEFSQTPGQE 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D V+FP++HG +GEDGS+QG L V Sbjct: 62 DRLMT-------------NATIDWDKQVVPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEV 108 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P+ Sbjct: 109 LKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPV 168 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 F KP+N GSSVG+SK ++E+ A+ LAF++D +V+VEQG+ REIE +LGN + +++ Sbjct: 169 FTKPSNMGSSVGISKSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKST 228 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G++R D Sbjct: 229 LPGEVVKDVAFYDYDAKYIDNK-ITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCD 287 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 F T + E+ +NE+NT+PGFT SMYP LW G+ Y+DLI L++LA + A Sbjct: 288 FFYTDKGEIFLNELNTMPGFTQWSMYPLLWDNMGISYSDLIEHLVDLAKQSFDKREAH 345 >emb|CAB64463.1| (AJ243053) D-ala,D-ala ligase [Streptococcus pneumoniae] emb|CAB64467.1| (AJ243054) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 241 bits (616), Expect = 7e-63 Identities = 131/358 (36%), Positives = 204/358 (56%), Gaps = 14/358 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A++ RF V I + G + ++ + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDSIKTQEFSHAPGQE 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D + V+FP++HG +GEDGS+QG L V Sbjct: 62 DRLMT-------------NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEV 108 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P+ Sbjct: 109 LKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPV 168 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +LGN + +++ Sbjct: 169 FTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKST 228 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G++R D Sbjct: 229 LPGEVVKDVAFYDYDAKYIDNK-VTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCD 287 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 F T + E+ +NE+NT+PGFT SMYP LW+ G+ Y +LI RL++LA E A Sbjct: 288 FFYTDKGEIFLNELNTMPGFTQWSMYPLLWENMGISYPELIERLVDLAKESFDKREAH 345 >ref|NP_359108.1| (NC_003098) D-alanine-D-alanine ligase [Streptococcus pneumoniae R6] gb|AAL00319.1| (AE008520) D-alanine-D-alanine ligase [Streptococcus pneumoniae R6] Length = 347 Score = 241 bits (616), Expect = 7e-63 Identities = 132/358 (36%), Positives = 205/358 (56%), Gaps = 14/358 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A+D RF V I + G + + ++ + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQE 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D + V+FP++HG +GEDGS+QG L V Sbjct: 62 DRLMT-------------NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEV 108 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P+ Sbjct: 109 LKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPV 168 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +LGN + +++ Sbjct: 169 FTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKST 228 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G++R D Sbjct: 229 LPGEVVKDVAFYDYDAKYIDNK-VTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCD 287 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 F T + E+ +NE+NT+PGFT SMYP LW+ G+ Y +LI RL++LA E A Sbjct: 288 FFYTDKGEIFLNELNTMPGFTQWSMYPLLWENMGISYPELIERLVDLAKESFDKREAH 345 >ref|NP_464381.1| (NC_003210) D-alanine--D-alanine ligase [Listeria monocytogenes EGD-e] emb|CAC98933.1| (AL591977) D-alanine--D-alanine ligase [Listeria monocytogenes] Length = 370 Score = 241 bits (615), Expect = 8e-63 Identities = 152/368 (41%), Positives = 226/368 (61%), Gaps = 7/368 (1%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K ++ +++GGKSAEHEVSLQ+A ++++A+D +F+ + I +G+W + L+ Sbjct: 2 KTKLILLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFV 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + + + K E + I + V+FP++HG GEDG++QG+ V Sbjct: 62 EQLRFSATDTIKLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEV 121 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFI---TLTRANRHNISFAEVESKLG 179 N+P+VG+ VLAS+A MDK V K++ DAG+ P + + N AE+E L Sbjct: 122 LNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVAEMEEVLT 181 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+FVKPAN GSSVG+SK T++++ A+ AF +D +V+VEQG+ REIE VLGND P Sbjct: 182 YPVFVKPANLGSSVGISKATNKKELVDAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTP 241 Query: 240 QASTCGEIVLT---SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 S GEI+ + FY Y KY D + A ++ P + PEI ++++ A+QA+ L + Sbjct: 242 VCSVPGEILPEGAVATFYDYKAKYQDNNTALII-PTEVDPEILEQMKEYAIQAFLGLDAS 300 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 G+ R D FLT +N++ +NE+NT+PGFT SMYP LWQ +GL Y LI RL++LA ERHAA Sbjct: 301 GLVRADFFLTEDNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLAKERHAA 360 Query: 357 DNALKTTM 364 NALK + Sbjct: 361 KNALKYKL 368 >ref|NP_346110.1| (NC_003028) D-alanine--D-alanine ligase [Streptococcus pneumoniae TIGR4] gb|AAK75750.1| (AE007460) D-alanine--D-alanine ligase [Streptococcus pneumoniae TIGR4] Length = 347 Score = 241 bits (615), Expect = 9e-63 Identities = 132/358 (36%), Positives = 204/358 (56%), Gaps = 14/358 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A+D RF V I + G + + ++ + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQE 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D + V+FP++HG +GEDGS+QG L V Sbjct: 62 DRLMT-------------NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEV 108 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P+ Sbjct: 109 LKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPV 168 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +LGN + +++ Sbjct: 169 FTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKST 228 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 GE+V FY YD KYID + + +PA I+ ++ +R A A++ +G G++R D Sbjct: 229 LPGEVVKDVAFYDYDAKYIDNN-ITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCD 287 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 F T + E+ +NE+NT+PGFT SMYP LW G+ Y LI RL++LA E A Sbjct: 288 FFYTDKGEIFLNELNTMPGFTQWSMYPLLWDNMGISYPKLIERLVDLAKESFDKREAH 345 >ref|NP_253535.1| (NC_002516) biotin carboxylase [Pseudomonas aeruginosa] sp|P37798|ACCC_PSEAE BIOTIN CARBOXYLASE (A SUBUNIT OF ACETYL-COA CARBOXYLASE (ACC) pir||B49342 acetyl-CoA carboxylase (EC 6.4.1.2), biotin carboxylase - Pseudomonas aeruginosa pir||H83039 biotin carboxylase PA4848 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAA16041.1| (L14612) biotin carboxylase [Pseudomonas aeruginosa] gb|AAG08233.1|AE004898_4 (AE004898) biotin carboxylase [Pseudomonas aeruginosa] Length = 449 Score = 241 bits (615), Expect = 9e-63 Identities = 54/341 (15%), Positives = 109/341 (31%), Gaps = 22/341 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 + + +R ++ L + + + + + + H++L + + P + Sbjct: 1 MLEKVLIANRGEIALRILRACKELGIKTVAVHSTADRELMHLSLADESVCIGPAPATQSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 Q+ + I P +G L E+ + + FVG DK Sbjct: 61 LQIPAIIAAAEVTGATAIHPG-YGFLAENADFAEQIERSGFTFVGPTAEVIRLMGDKVSA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K ++ AG+ P + + ++G P+ +K A G G+ V E + Sbjct: 120 KDAMKRAGVPTVPGSDGPLPED-EETALAIAREVGYPVIIKAAGGGGGRGMRVVYDESEL 178 Query: 205 AIAVDL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + L A + V +E+ + R +E VL + A G+ Sbjct: 179 IKSAKLTRTEAGAAFGNPMVYLEKFLTNPRHVEVQVLSDGQGNAIHLGDRD--CSLQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E I + ++ A VQA +G G + E+N Sbjct: 237 QKVIEE-----APAPGIDEKARQEVFARCVQACIEIGYRGAGTFEFLY-ENGRFYFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 T + P +G+ + R+ ++ Sbjct: 291 TRVQVEH----PVSEMVTGVDIVKEMLRIASGEKLSIRQED 327 >sp|O54631|DDL_STRPN D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAC95435.1| (AF068901) D-Ala-D-Ala ligase [Streptococcus pneumoniae] Length = 347 Score = 241 bits (614), Expect = 1e-62 Identities = 131/358 (36%), Positives = 204/358 (56%), Gaps = 14/358 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A++ RF V I + G + + ++ + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSHAPGQE 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D + V+FP++HG +GEDGS+QG L V Sbjct: 62 DRLMT-------------NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEV 108 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P+ Sbjct: 109 LKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPV 168 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +LGN + +++ Sbjct: 169 FTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKST 228 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G++R D Sbjct: 229 LPGEVVKDVAFYDYDAKYIDNK-ITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCD 287 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 F T + E+ +NE+NT+PGFT SMYP LW G+ Y +LI RL++LA E A Sbjct: 288 FFYTDKGEIFLNELNTMPGFTQWSMYPLLWDNMGISYPELIERLVDLAKESFDKREAH 345 >gb|AAH06915.1|AAH06915 (BC006915) Similar to Propionyl Coenzyme A carboxylase, alpha polypeptide [Mus musculus] Length = 724 Score = 241 bits (614), Expect = 1e-62 Identities = 56/342 (16%), Positives = 113/342 (32%), Gaps = 22/342 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKHEH 85 + +R ++ I + + + + H+ + A + P K Sbjct: 59 FDKILIANRGEIACRVIKTCKKMGIKTVAIHSDVDASSVHVKMADEAVCVGPAPTSKSYL 118 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + + P +G L E+ L ++ F+G D A A DK +K Sbjct: 119 NMDAIMEAIKKTRAQAVHPG-YGFLSENKEFAKRLAAEDVTFIGPDTHAIQAMGDKIESK 177 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 L + A +N P + + ++G P+ +K + G G+ +E+ Sbjct: 178 LLAKRAKVNTIPGFDGVVKDA--DEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETR 235 Query: 206 IAV----DLAF--EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A D ++++E+ I R IE VLG+ + A E + Sbjct: 236 DGFRFSSQEAASSFGDDRLLIEKFIDNPRHIEIQVLGDKHGNALWLNER--ECSIQRRNQ 293 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K ++E + PE + AV + + + V+ + + E+NT Sbjct: 294 KVVEE-----APSIFLDPETRQAMGEQAVALAKAVKYSSAGTVEFLVDSQKNFYFLEMNT 348 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + P +GL + + + RH ++ Sbjct: 349 RLQVEH----PVTECITGLDLVQEMILVAKGYPLRHKQEDIP 386 >emb|CAB64459.1| (AJ243052) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 241 bits (614), Expect = 1e-62 Identities = 131/358 (36%), Positives = 203/358 (56%), Gaps = 14/358 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A++ RF V I + G + ++ + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDSIKTQEFSHAPGQE 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D + V+FP++HG +GEDGS+QG L V Sbjct: 62 DRLMT-------------NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEV 108 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P+ Sbjct: 109 LKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPV 168 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +LGN + +++ Sbjct: 169 FTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKST 228 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G++R D Sbjct: 229 LPGEVVKDVAFYDYDAKYIDNK-VTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCD 287 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 F T + E+ +NE+NT+PGFT SMYP LW G+ Y +LI RL++LA E A Sbjct: 288 FFYTDKGEIFLNELNTMPGFTQWSMYPLLWDNMGISYPELIERLVDLAKESFDKREAH 345 >emb|CAB64475.1| (AJ243056) D-ala,D-ala ligase [Streptococcus pneumoniae] emb|CAB64479.1| (AJ243057) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 241 bits (614), Expect = 1e-62 Identities = 132/358 (36%), Positives = 204/358 (56%), Gaps = 14/358 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A+D RF V I + G + + ++ + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQE 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D + V+FP++HG +GEDGS+QG L V Sbjct: 62 DRLMT-------------NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEV 108 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P+ Sbjct: 109 LKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPV 168 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 F KP+N GSSVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +LGN + +++ Sbjct: 169 FTKPSNMGSSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKST 228 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G++R D Sbjct: 229 LPGEVVKDVAFYDYDAKYIDNK-ITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCD 287 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 F T + E+ +NE+NT+PGFT SMYP LW G+ Y +LI RL++LA E A Sbjct: 288 FFYTDKGEIFLNELNTMPGFTQWSMYPLLWDNMGISYPELIERLVDLAKESFDKREAH 345 >emb|CAB64471.1| (AJ243055) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 240 bits (613), Expect = 1e-62 Identities = 130/358 (36%), Positives = 202/358 (56%), Gaps = 14/358 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A++ RF V I + G + + + + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQE 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D V+FP++HG +GEDGS+QG L V Sbjct: 62 DRLMT-------------NATIDWDKKVAPSAIYEEEAVVFPVLHGPMGEDGSVQGFLEV 108 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+VG ++L+S+ MDK TKR+L G+ P++ + + AEVE KL P+ Sbjct: 109 LKMPYVGCNILSSSLAMDKITTKRVLESTGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPV 168 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 F KP+N GSSVG+SK ++E+ A+ LAF++D +V+VEQG+ REIE +LGN + +++ Sbjct: 169 FTKPSNMGSSVGISKSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKST 228 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G++R D Sbjct: 229 LPGEVVKDVAFYDYDAKYIDNK-ITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCD 287 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 F T + E+ +NE+NT+PGFT SMYP LW G+ Y +LI RL++LA E A Sbjct: 288 FFYTDKGEIFLNELNTMPGFTQWSMYPLLWDNMGISYPELIERLVDLAKESFDKREAH 345 >gb|AAG34685.1|AF310955_1 (AF310955) ligase VanB2 [Enterococcus faecalis] gb|AAG34693.1|AF310957_1 (AF310957) ligase VanB2 [Enterococcus faecium] Length = 342 Score = 240 bits (613), Expect = 1e-62 Identities = 124/357 (34%), Positives = 197/357 (54%), Gaps = 19/357 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V +FGG S EH+VS++SA I ID +FD +GI K G W + Sbjct: 1 MNRIKVATIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 D L P + + K +DV FP++HG GEDG++QG+ Sbjct: 61 -ADSLPAILSPDRKTHGLLVMKESE--------YETRRIDVAFPVLHGKCGEDGAIQGLF 111 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 112 VLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPE------AGALTY 165 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-NP 239 P+FVKPA GSS GV+KV E+ A++ A ++D K+++EQ I G E+ CAV+GN+ + Sbjct: 166 PVFVKPARSGSSFGVTKVNGPEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDDL 225 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVV---PAAIAPEINDKIRAIAVQAYQTLGCA 296 +I L+ + + E G++ + PA I E ++++ A + Y+ LGC Sbjct: 226 IVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCR 285 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+ARVD+FL + +V+NE+NT+PGFT+ S YP++ A+G+ LI LI LAL+R Sbjct: 286 GLARVDLFLQEDGGIVLNEVNTMPGFTSYSRYPRMVAAAGITLPALIDSLITLALKR 342 >pir||T06360 methylcrotonoyl-CoA carboxylase (EC 6.4.1.4) biotin carboxylase chain - soybean Length = 731 Score = 240 bits (613), Expect = 2e-62 Identities = 53/343 (15%), Positives = 110/343 (31%), Gaps = 23/343 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HEH 85 I + +R ++ + + + Y D H+A A + P + Sbjct: 33 IEKILVANRGEIACRITRTARRLGIQTVAVYSDADRDSLHVATADEAIRIGPPPARLSYL 92 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + I P +G L E + + L F+G A DK +K Sbjct: 93 NGASIVDAAIRSGAQAIHPG-YGFLSESADFAKLCEESGLTFIGPPASAIRDMGDKSASK 151 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 R++ AG+ + P ++ ++G P+ +KP + G G+ V + +++ Sbjct: 152 RIMGAAGVPLVPGYHGY--DQDIEKMKLEADRIGYPVLIKPTHGGGGKGMRIVHTPDEFV 209 Query: 206 IAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 + A + +++E+ I + R IE + G+ + E Sbjct: 210 ESFLAAQREAAASFGVNTILLEKYITRPRHIEVQIFGDKHGNVLHLYERD--CSVQRRHQ 267 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTP-ENEVVINEIN 317 K I+E I+ + ++ AV A + + V+ + +E E+N Sbjct: 268 KIIEE-----APAPNISADFRAQLGVAAVSAAKAVNYYNAGTVEFIVDTVSDEFYFMEMN 322 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P G + + + Sbjct: 323 TRLQVEH----PVTEMIVGQDLVEWQILVANGEALPLSQSQVP 361 >gb|AAC23582.1| (U82965) D-alanine:D-alanine ligase-related protein [Streptomyces toyocaensis] Length = 340 Score = 240 bits (612), Expect = 2e-62 Identities = 122/346 (35%), Positives = 198/346 (56%), Gaps = 18/346 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +L++GIVFGG+S EH VS++SA+ + +D +++ +GI K G W + D + Sbjct: 1 MARLKIGIVFGGRSEEHPVSIKSAREVARNLDLEKYEPFYIGITKSGAWKLCDGPDAEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 D + L P + + + G +DV+ P++HG LGEDG++QG+L Sbjct: 61 DGDCRPVVLSPDSDVHGLLVLEQG--------GCSTIRLDVVLPVLHGKLGEDGAMQGLL 112 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 ++ +P+VG D+ +SA CMDK + ++R+AG+ F T+ A+ + Sbjct: 113 ELSGIPYVGCDIQSSAVCMDKSLAYAVVRNAGIATPNFWTVA-ADETVDAAR-----FTY 166 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-NP 239 P+FVKPA GSS GV+KV+ EE+ + AV+ A ++D KV++E+ + G EI CA+LG + Sbjct: 167 PVFVKPARSGSSFGVTKVSREEEMSSAVETARQYDSKVLIEEAVPGSEIGCAILGTGTDL 226 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAK---VVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 I L+ F+ + E G++ +VPA I +++ A Y+ LGC Sbjct: 227 VVGEVDRIALSHGFFRIHQEDSPETGSENSIAIVPADIPEASRLRVQEEAKAVYRVLGCR 286 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDL 342 G+ARVD+FL + EVV+NE+NTLPG T+ S YP++ A+GL +++ Sbjct: 287 GIARVDMFLKEDGEVVLNEVNTLPGLTSYSRYPRMMAAAGLPMSEV 332 >emb|CAB05883.1| (Z83305) D-alanine:D-alanine ligase-related protein [Enterococcus faecium] gb|AAB39760.1| (U81452) D-alanine:D-alanine ligase-related protein [Enterococcus faecium] gb|AAG34691.1|AF310956_6 (AF310956) D-alanine:D-lactate ligase [Enterococcus faecium] Length = 342 Score = 240 bits (612), Expect = 2e-62 Identities = 125/357 (35%), Positives = 198/357 (55%), Gaps = 19/357 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V I+FGG S EH+VS++SA I ID +FD +GI K G W + Sbjct: 1 MNRIKVAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 D L P + + K +DV FP++HG GEDG++QG+ Sbjct: 61 -ADSLPAILSPDRKTHGLLVMKESE--------YETRRIDVAFPVLHGKCGEDGAIQGLF 111 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 112 VLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPE------AGALTY 165 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-NP 239 P+FVKPA GSS G++KV E+ A++ A ++D K+++EQ I G E+ CAV+GN+ + Sbjct: 166 PVFVKPARSGSSFGLTKVNGTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDDL 225 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVV---PAAIAPEINDKIRAIAVQAYQTLGCA 296 +I L+ + + E G++ + PA I E ++++ A + Y+ LGC Sbjct: 226 IVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCR 285 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+ARVD+FL + +V+NE+NTLPGFT+ S YP++ A+G+ LI LI LAL+R Sbjct: 286 GLARVDLFLQEDGGIVLNEVNTLPGFTSYSRYPRMMAAAGITLPALIDSLITLALKR 342 >gb|AAD41882.1|AF153050_3 (AF153050) D-alanine:D-lactate ligase [Enterococcus faecium] Length = 343 Score = 240 bits (612), Expect = 2e-62 Identities = 125/357 (35%), Positives = 203/357 (56%), Gaps = 18/357 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K++V ++FGG S EH VS++SA I ID ++ +GI K G W + + Sbjct: 1 MFKIKVAVLFGGCSEEHNVSIKSAMEIAANIDTKKYQPYYIGITKSGVWKMCEKPCLGWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + P ++ + K G + VDV+FP++HG GEDGS+QG+L Sbjct: 61 QYAGDPVVFSPDRSTHGLLIQKD--------TGYEIQPVDVVFPMIHGKFGEDGSIQGLL 112 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 ++ +P+VG D+ +S CMDK + ++++AG+ + F L +R L Sbjct: 113 ELSGIPYVGCDIQSSVICMDKALAYTVVKNAGIAVPGFRILQEGDRLET------EDLVY 166 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN-P 239 P+FVKPA GSS GV+KV E+ A+ A ++D K+++E+ + G E+ CA+LGN+N Sbjct: 167 PVFVKPARSGSSFGVNKVCKAEELQAAIREARKYDSKILIEEAVTGSEVGCAILGNENDL 226 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVV---VPAAIAPEINDKIRAIAVQAYQTLGCA 296 A +I L F+ + E G++ VPAA+ E+ ++IR A++ Y+ LGC Sbjct: 227 MAGEVDQIELRHGFFKIHQEAQPEKGSENAVIRVPAALPDEVRERIRKTAMKIYRILGCR 286 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+AR+D+FL + +V+NE+NT+PGFT+ S YP++ A+G ++++ RLIE +L R Sbjct: 287 GLARIDLFLREDGCIVLNEVNTMPGFTSYSRYPRMMTAAGFTLSEILDRLIEFSLRR 343 >ref|NP_534077.1| (NC_003305) propionyl-coenzyme A carboxylase, alpha polypeptide [Agrobacterium tumefaciens str. C58 (U. Washington)] gb|AAL44393.1| (AE009288) propionyl-coenzyme A carboxylase, alpha polypeptide [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 677 Score = 239 bits (611), Expect = 2e-62 Identities = 58/340 (17%), Positives = 117/340 (34%), Gaps = 22/340 (6%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-H 83 + I + +R ++ I + ++ + Y + H+ + A + P Sbjct: 10 RMIKKILIANRGEIACRVIKTAKKMGIATVAVYSDADANALHVKMADEAVHIGPAPSSQS 69 Query: 84 EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + D + P +G L E+ + L A + F+G V A A DK Sbjct: 70 YIVIDKILEAIQKTGADAVHPG-YGFLSENAAFAQALEKAGVVFIGPPVGAIEAMGDKIT 128 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 +K+L AG++ P + ++ S++G P+ +K + G G+ +E + Sbjct: 129 SKKLAAKAGVSTVPGHMGLIEDA--DEAVKIASQIGYPVMIKASAGGGGKGMRIAFNEAE 186 Query: 204 YAIAVDLAF------EFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 + D ++ +E+ + + R IE VLG+ + GE Sbjct: 187 AREGFQSSKNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDKHGTILYLGER--ECSIQRR 244 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEI 316 + K I+E + + AV + +G V+ + E E+ Sbjct: 245 NQKVIEE-----APSPFLDEATRHAMGEQAVALARAVGYHSAGTVEFIVDGERNFYFLEM 299 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 NT + P +G+ + + R+ A Sbjct: 300 NTRLQVEH----PVTELVTGIDLVEQMIRVASGEKLSLAQ 335 >gb|AAL02364.1| (AY046947) propionyl CoA-carboxylase alpha-subunit [Mus musculus] Length = 724 Score = 239 bits (611), Expect = 2e-62 Identities = 56/342 (16%), Positives = 113/342 (32%), Gaps = 22/342 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKHEH 85 + +R ++ I + + + + H+ + A + P K Sbjct: 59 FDKILIANRGEIACRVIKTCKKMGIKTVAIHSDVDASSVHVKMADEAVCVGPAPTSKSYL 118 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + + P +G L E+ L ++ F+G D A A DK +K Sbjct: 119 NMDAIMEAIKKTRAQAVHPG-YGFLSENKEFAKRLAAEDVTFIGPDTHAIQAMGDKIESK 177 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 L + A +N P + + ++G P+ +K + G G+ +E+ Sbjct: 178 LLAKRAKVNTIPGFDGVVKDA--DEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETR 235 Query: 206 IAV----DLAF--EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A D ++++E+ I R IE VLG+ + A E + Sbjct: 236 DGFRFSSQEAASSFGDDRLLIEKFIDNPRHIEIQVLGDKHGNALWLNER--ECSIQRRNQ 293 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K ++E + PE + AV + + + V+ + + E+NT Sbjct: 294 KVVEE-----APSIFLDPETRQAMGEQAVALAKAVKYSSAGTVEFLVDSQKNFYFLEMNT 348 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + P +GL + + + RH ++ Sbjct: 349 RLQVEH----PVTECITGLDLVQEMILVAKGYPLRHKQEDIP 386 >ref|NP_269512.1| (NC_002737) putative D-ala,D-ala ligase [Streptococcus pyogenes] [Streptococcus pyogenes M1 GAS] gb|AAK34233.1| (AE006579) putative D-ala,D-ala ligase [Streptococcus pyogenes M1 GAS] Length = 348 Score = 239 bits (610), Expect = 3e-62 Identities = 124/360 (34%), Positives = 199/360 (54%), Gaps = 14/360 (3%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M K + +++GG+SAE EVS+ SA++++ A++ +F V I + GQ+ + + + Sbjct: 1 MSKQTLVLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQMGQFIKTQQFSEKPS 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + + + V+FP++HG +GEDGS+QG L Sbjct: 61 ESERLMT-------------NETIELTQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFL 107 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 V +P++G++V++S+ MDK TKR+L G+ + E ++L Sbjct: 108 EVLRMPYIGTNVMSSSIAMDKITTKRVLESIGIPQVAYTVYIDGQDLEACLVETLARLTF 167 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+FVKPAN GSSVG+SK ++ + A+ LA +D +V++EQG+ REIE +LGND + Sbjct: 168 PIFVKPANMGSSVGISKAQTKVELRKAIQLALTYDSRVLIEQGVVAREIEVGLLGNDKVK 227 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 ++ GE++ DFY Y KY+D + +PA + I ++R+ A A++ LG G++R Sbjct: 228 STLPGEVIKDVDFYDYQAKYVDNK-ITMAIPADVDQSIVTEMRSYAEVAFKALGGCGLSR 286 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 D FLT + +V +NE+NT+PGFT SMYP LW+ GL Y DLI L+ LA E + Sbjct: 287 CDFFLTQDGQVYLNELNTMPGFTQWSMYPLLWENMGLAYPDLIEELVTLAQEMFDQRESH 346 >ref|NP_357031.1| (NC_003063) AGR_L_580GMp [Agrobacterium tumefaciens] [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAK89816.1| (AE008324) AGR_L_580GMp [Agrobacterium tumefaciens str. C58 (Cereon)] Length = 667 Score = 238 bits (608), Expect = 6e-62 Identities = 58/339 (17%), Positives = 116/339 (34%), Gaps = 22/339 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HE 84 I + +R ++ I + ++ + Y + H+ + A + P Sbjct: 1 MIKKILIANRGEIACRVIKTAKKMGIATVAVYSDADANALHVKMADEAVHIGPAPSSQSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D + P +G L E+ + L A + F+G V A A DK + Sbjct: 61 IVIDKILEAIQKTGADAVHPG-YGFLSENAAFAQALEKAGVVFIGPPVGAIEAMGDKITS 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K+L AG++ P + ++ S++G P+ +K + G G+ +E + Sbjct: 120 KKLAAKAGVSTVPGHMGLIEDA--DEAVKIASQIGYPVMIKASAGGGGKGMRIAFNEAEA 177 Query: 205 AIAVDLAF------EFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + D ++ +E+ + + R IE VLG+ + GE + Sbjct: 178 REGFQSSKNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDKHGTILYLGER--ECSIQRRN 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E + + AV + +G V+ + E E+N Sbjct: 236 QKVIEE-----APSPFLDEATRHAMGEQAVALARAVGYHSAGTVEFIVDGERNFYFLEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 T + P +G+ + + R+ A Sbjct: 291 TRLQVEH----PVTELVTGIDLVEQMIRVASGEKLSLAQ 325 >sp|P29753|VANC_ENTGA VANCOMYCIN C-TYPE RESISTANCE PROTEIN VANC (VANC LIGASE) pir||JN0249 vancomycin resistance protein vanC - Enterococcus gallinarum gb|AAA24786.1| (AF162694) D-alanine-D-alanine ligase-related protein [Enterococcus gallinarum] Length = 343 Score = 238 bits (607), Expect = 7e-62 Identities = 116/350 (33%), Positives = 181/350 (51%), Gaps = 10/350 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 ++ ++FGG S E+ VSL SA +++ AID +++V+ +GI W+ + + D Sbjct: 2 KKIAVLFGGNSPEYSVSLTSAASVIQAIDPLKYEVMTIGIAPTMDWYWYQGNLANVRNDT 61 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + + G+ DV+FP++HG GEDG +QG+L + Sbjct: 62 WLED---------HKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELM 112 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 NLP+VG V ASA CM+K + +L G+ AP + L+R + G P+F Sbjct: 113 NLPYVGCHVAASALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIF 172 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 +KP GSS G++KVT + A+ AF + V++++ I G EI C +LGN+ Sbjct: 173 IKPNEAGSSKGITKVTDKTALQSALTTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGA 232 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 C I L F+ ++ KY A + VPA + + +I+ A Y+ LG G+AR+D Sbjct: 233 CDAISLVDGFFDFEEKYQ-LISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDF 291 Query: 304 FLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 F+T + + +NEINT+PGFT S YP + GL Y L+ +LI LA E Sbjct: 292 FVTNQGAIYLNEINTMPGFTGHSRYPAMMAEVGLSYEILVEQLIALAEED 341 >ref|NP_470190.1| (NC_003212) D-alanine--D-alanine ligase [Listeria innocua] emb|CAC96080.1| (AL596166) D-alanine--D-alanine ligase [Listeria innocua] Length = 370 Score = 237 bits (605), Expect = 1e-61 Identities = 152/368 (41%), Positives = 222/368 (60%), Gaps = 7/368 (1%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K ++ +++GGKSAEHEVSLQ+A ++++A+D +F+ + I +G+W + L+ Sbjct: 2 KTKLILLYGGKSAEHEVSLQTAFSVINALDLEKFEAEPIYITNEGEWVQGPLLSGKLDFV 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + + K E + I + V+FP++HG GEDG++QG+ V Sbjct: 62 EQLRFSATDRVKLATAESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEV 121 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFI---TLTRANRHNISFAEVESKLG 179 N+P+VG+ VLAS+A MDK V K++ DAG+ P + + N E+E L Sbjct: 122 LNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVTEMEEVLT 181 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 P+FVKPAN GSSVG+SK T++ + A+ AF +D +V+VEQG+ REIE VLGND P Sbjct: 182 YPVFVKPANLGSSVGISKATNKTELIEAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTP 241 Query: 240 QASTCGEIVLTSD---FYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCA 296 S GEI+ FY Y KY D + A ++ P + PEI ++++ AVQA+ L + Sbjct: 242 VCSVPGEILPEGAVAKFYDYKAKYQDNNTALII-PTEVEPEILEQMKEYAVQAFLGLDAS 300 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 G+ R D FLT +N++ +NE+NT+PGFT SMYP LWQ +GL Y LI RL++LA ERHAA Sbjct: 301 GLVRADFFLTEDNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLAKERHAA 360 Query: 357 DNALKTTM 364 NALK + Sbjct: 361 KNALKYKL 368 >ref|NP_357130.1| (NC_003063) AGR_L_2704p [Agrobacterium tumefaciens] [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAK89915.1| (AE008334) AGR_L_2704p [Agrobacterium tumefaciens str. C58 (Cereon)] Length = 709 Score = 237 bits (605), Expect = 1e-61 Identities = 60/343 (17%), Positives = 112/343 (32%), Gaps = 23/343 (6%) Query: 19 VSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ 78 S A + +R ++ I + + Y D H+AL A ++ Sbjct: 40 YSGCEATMFSKILIANRGEIACRIIRTAASMGIRTVAVYSDADRDAMHVALADEAIAIGP 99 Query: 79 VPGK-HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAA 137 P + + I P +G L E+ A L F+G A A Sbjct: 100 APARASYLDGEKIIAAAKASGAEAIHPG-YGFLSENAGFAEACASAGLVFIGPPPEAIRA 158 Query: 138 CMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSK 197 K K L+ AG+ I P + A K+G P+ +K + G G+ Sbjct: 159 MGGKSEAKALMATAGVPIVPGYHGD--EQAEKRLASEADKIGYPVLLKASAGGGGKGMRV 216 Query: 198 VTSEEQYAIAV------DLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLT 250 V + +A + LA + ++++E+ ++ R +E V + + + E Sbjct: 217 VRQKHDFAAELAGAKREALAAFGNDRMLIEKYLERPRHVEVQVFADGHGNCVSLFERD-- 274 Query: 251 SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENE 310 K I+E + ++ ++ A A + + G ++ L P Sbjct: 275 CSIQRRHQKVIEE-----APAPGLPDDLRQRMYDAATAAARAIDYRGAGTIEFLLDPSG- 328 Query: 311 VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 E+NT + P +GL + R+ Sbjct: 329 FYFMEMNTRLQVEH----PVTEYITGLDLVEWQLRVANGEALP 367 >emb|CAB63849.1| (AJ243051) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 237 bits (605), Expect = 1e-61 Identities = 130/358 (36%), Positives = 204/358 (56%), Gaps = 14/358 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A+D RF V I + G + + ++ + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQE 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D + V+FP++HG +GEDGS+QG L V Sbjct: 62 DRLMT-------------NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEV 108 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P+ Sbjct: 109 LKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPV 168 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 F KP+N G SVG+SK ++E+ A+ LAF +D +V+VEQG+ REIE +LGN + +++ Sbjct: 169 FTKPSNMGCSVGISKSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKST 228 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G++R + Sbjct: 229 LPGEVVKDVAFYDYDAKYIDNK-VTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCN 287 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 F T + E+ +NE+NT+PGFT SMYP LW+ G+ Y +LI RL++LA E A Sbjct: 288 FFYTDKGEIFLNELNTMPGFTQWSMYPLLWENMGISYPELIERLVDLAKESFDKREAH 345 >pir||A34337 propionyl-CoA carboxylase (EC 6.4.1.3) alpha chain precursor - rat (fragment) Length = 704 Score = 237 bits (605), Expect = 1e-61 Identities = 56/342 (16%), Positives = 113/342 (32%), Gaps = 22/342 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKHEH 85 + +R ++ I + + + + H+ + A + P K Sbjct: 39 FDKILIANRGEIACRVIKTCRKMGIRTVAIHSDVDASSVHVKMADEAVCVGPAPTSKSYL 98 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + + P +G L E+ L ++ F+G D A A DK +K Sbjct: 99 NMDAIMEAIKKTGAQAVHPG-YGFLSENKEFAKCLAAEDVTFIGPDTHAIQAMGDKIESK 157 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 L + A +N P + + ++G P+ +K + G G+ +E+ Sbjct: 158 LLAKRAKVNTIPGFDGVLKDA--DEAVRIAREIGYPVMIKASAGGGGKGMRIPWDDEETR 215 Query: 206 IAV----DLAF--EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A D ++++E+ I R IE VLG+ + A E + Sbjct: 216 DGFRFSSQEAASSFGDDRLLIEKFIDNPRHIEIQVLGDKHGNALWLNER--ECSIQRRNQ 273 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K ++E + PE + AV + + + V+ + + E+NT Sbjct: 274 KVVEE-----APSIFLDPETRRAMGEQAVALAKAVKYSSAGTVEFLVDSQKNFYFLEMNT 328 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + P +GL + + + RH ++ Sbjct: 329 RLQVEH----PVTECITGLDLVQEMILVAKGYPLRHKQEDIP 366 >ref|NP_036876.1| (NM_012744) pyruvate carboxylase [Rattus norvegicus] sp|P52873|PYC_RAT Pyruvate carboxylase, mitochondrial precursor (Pyruvic carboxylase) (PCB) gb|AAA96256.1| (U32314) pyruvate carboxylase [Rattus norvegicus] Length = 1178 Score = 237 bits (605), Expect = 1e-61 Identities = 49/337 (14%), Positives = 103/337 (30%), Gaps = 23/337 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ--VPGKHE 84 I + +R ++ + + + + Y H A + + P + Sbjct: 37 IKKVMVANRGEIAIRVFRACTELGIRTVAVYSEQDTGQMHRQKADEAYLIGRGLAPVQAY 96 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D VD + P +G L E + A + F+G DK Sbjct: 97 LHIPDIIKVAKENGVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEA 155 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + + AG+ + P E + G P+ K A G G+ V S E+ Sbjct: 156 RAIAIAAGVPVVPGT--NSPINSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEEL 213 Query: 205 AIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A + + VE+ I+ R IE +LG+ E Sbjct: 214 EENYTRAYPEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERD--CSIQRRH 271 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ + + P++ ++ + +V+ + +G V+ + + E+N Sbjct: 272 QKVVE-----IAPATHLDPQLRSRLTSDSVKLAKQVGYENAGTVEFLVDKHGKHYFIEVN 326 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 + + + + + + E Sbjct: 327 SRLQVEHT----VTEEITDVDLVHAQIHVSEGRSLPD 359 >gb|AAG34684.1|AF310954_1 (AF310954) ligase VanB2 [Enterococcus faecium] Length = 342 Score = 237 bits (605), Expect = 1e-61 Identities = 124/357 (34%), Positives = 197/357 (54%), Gaps = 19/357 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V +FGG S EH+VS++SA I ID +FD +GI K G W + Sbjct: 1 MNRIKVATIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 D L P + + K +DV FP++HG GEDG++QG+ Sbjct: 61 -ADSLPAILSPDRKTHGLLVMKESE--------YETRRIDVAFPVLHGKCGEDGAIQGLF 111 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 112 VLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPE------AGALTY 165 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-NP 239 P+FVKPA GSS G++KV E+ A++ A ++D K+++EQ I G E+ CAV+GN+ + Sbjct: 166 PVFVKPARAGSSFGLTKVNGTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDDL 225 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVV---PAAIAPEINDKIRAIAVQAYQTLGCA 296 +I L+ + + E G++ + PA I E ++++ A + Y+ LGC Sbjct: 226 IVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCR 285 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+ARVD+FL + +V+NE+NTLPGFT+ S YP++ A+G+ LI LI LAL+R Sbjct: 286 GLARVDLFLQEDGGIVLNEVNTLPGFTSYSRYPRMMAAAGITLPALIDSLITLALKR 342 >pir||S68252 pyruvate carboxylase (EC 6.4.1.1) precursor - rat pir||JC4391 pyruvate carboxylase (EC 6.4.1.1) precursor - rat gb|AAC52668.1| (U36585) pyruvate carboxylase [Rattus norvegicus] Length = 1178 Score = 237 bits (605), Expect = 1e-61 Identities = 49/337 (14%), Positives = 103/337 (30%), Gaps = 23/337 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ--VPGKHE 84 I + +R ++ + + + + Y H A + + P + Sbjct: 37 IKKVMVANRGEIAIRVFRACTELGIRTVAVYSEQDTGQMHRQKADEAYLIGRGLAPVQAY 96 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D VD + P +G L E + A + F+G DK Sbjct: 97 LHIPDIIKVAKENGVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEA 155 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + + AG+ + P E + G P+ K A G G+ V S E+ Sbjct: 156 RAIAIAAGVPVVPGT--NSPINSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEEL 213 Query: 205 AIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A + + VE+ I+ R IE +LG+ E Sbjct: 214 EENYTRAYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERD--CSIQRRH 271 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ + + P++ ++ + +V+ + +G V+ + + E+N Sbjct: 272 QKVVE-----IAPATHLDPQLRSRLTSDSVKLAKQVGYENAGTVEFLVDKHGKHYFIEVN 326 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 + + + + + + E Sbjct: 327 SRLQVEHT----VTEEITDVDLVHAQIHVSEGRSLPD 359 >ref|NP_294085.1| (NC_001263) D-alanine--D-alanine ligase [Deinococcus radiodurans] pir||D75529 D-alanine--D-alanine ligase - Deinococcus radiodurans (strain R1) gb|AAF09941.1|AE001896_6 (AE001896) D-alanine--D-alanine ligase [Deinococcus radiodurans] Length = 339 Score = 237 bits (604), Expect = 1e-61 Identities = 148/356 (41%), Positives = 217/356 (60%), Gaps = 24/356 (6%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K R+ ++ GG+S EHEVSL+SA++++ A+ + +FDV + I KQG+W Sbjct: 2 KRRILLLAGGQSGEHEVSLRSARSVLAALPRDQFDVTPVVISKQGRWLPPT--------- 52 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + + + D +FP++HG +GEDG++QG+L + Sbjct: 53 ---------ETQKALETGVSSQGGDLMLHRAAAAEGYDAVFPLLHGPMGEDGTIQGLLTL 103 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN--RHNISFAEVESKLGL 180 A +PFVGS VL SA MDK +TK++L AG+ + R + + ++LG Sbjct: 104 AGIPFVGSGVLGSAVSMDKVMTKQVLDSAGIPQVAWRLAVRREWQQTPDAVRARAAELGY 163 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIK--GREIECAVLGNDN 238 PLFVKPAN GSSVG+SKV S E+ A+ LAF D +VI+E RE+E +LGND Sbjct: 164 PLFVKPANLGSSVGISKVGSPEELDAALTLAFGLDRRVILEAMTPHKPREVEVGILGNDV 223 Query: 239 PQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 P AS GE+ +DFY Y+TKY + A++ +PA I PE++++IR A++A++ L CAG+ Sbjct: 224 PVASPVGELSFDADFYDYETKYTEGR-AEMHIPARIPPEVSERIRTEALRAFRALDCAGL 282 Query: 299 ARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 ARVD F E E+ +NE+NT+PGFT SMYPKL++A+GL Y++L+TRL+ELALE Sbjct: 283 ARVDFFYVEETGELFLNEVNTMPGFTTTSMYPKLFEAAGLSYSELVTRLVELALEE 338 >ref|NP_372050.1| (NC_002758) acetyl-CoA carboxylase [Staphylococcus aureus subsp. aureus Mu50] ref|NP_374640.1| (NC_002745) acetyl-CoA carboxylase (biotin carboxylase subunit) accC [Staphylococcus aureus subsp. aureus N315] dbj|BAB42619.1| (AP003134) acetyl-CoA carboxylase accC [Staphylococcus aureus subsp. aureus N315] dbj|BAB57688.1| (AP003362) acetyl-CoA carboxylase [Staphylococcus aureus subsp. aureus Mu50] Length = 451 Score = 237 bits (604), Expect = 1e-61 Identities = 48/342 (14%), Positives = 109/342 (31%), Gaps = 23/342 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKH-EH 85 + + +R ++ + I + + Y D H + A + K Sbjct: 1 MKKVLIANRGEIAVRIIRACRDLGIQTVAIYSEGDKDALHTQIADEAYCVGPTLSKDSYL 60 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + + + D + P +G L E+ + L F+G + KDV K Sbjct: 61 NIPNILSIATSTGCDGVHPG-YGFLAENADFAELCEACQLKFIGPSYQSIQKMGIKDVAK 119 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 + A + + P + ++ K+G P+ +K G G+ E++ Sbjct: 120 AEMIKANVPVVPGSDGLMKD--VSEAKKIAKKIGYPVIIKATAGGGGKGIRVARDEKELE 177 Query: 206 ------IAVDLAFEFDHKVIVEQGIKGR-EIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 + + +E+ I+ IE ++G+ GE Sbjct: 178 TGFRMTEQEAQTAFGNGGLYMEKFIENFRHIEIQIVGDSYGNVIHLGERD--CTIQRRMQ 235 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEIN 317 K ++E + E ++ AV+A + + ++ +N+ E+N Sbjct: 236 KLVEE-----APSPILDDETRREMGNAAVRAAKAVNYENAGTIEFIYDLNDNKFYFMEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 T + P +G+ L ++ + + ++ Sbjct: 291 TRIQVEH----PVTEMVTGIDLVKLQLQVAMGDVLPYKQEDI 328 >ref|NP_000273.1| (NM_000282) Propionyl-Coenzyme A carboxylase, alpha polypeptide precursor [Homo sapiens] ref|XP_049016.1| (XM_049016) Propionyl-Coenzyme A carboxylase, alpha polypeptide precursor [Homo sapiens] sp|P05165|PCCA_HUMAN PROPIONYL-COA CARBOXYLASE ALPHA CHAIN, MITOCHONDRIAL PRECURSOR (PCCASE ALPHA SUBUNIT) (PROPANOYL-COA:CARBON DIOXIDE LIGASE ALPHA SUBUNIT) pir||A27883 propionyl-CoA carboxylase (EC 6.4.1.3) alpha chain precursor - human emb|CAA32763.1| (X14608) propionyl-CoA carboxylase [Homo sapiens] gb|AAH00140.1|AAH00140 (BC000140) propionyl Coenzyme A carboxylase, alpha polypeptide [Homo sapiens] Length = 703 Score = 237 bits (604), Expect = 1e-61 Identities = 56/342 (16%), Positives = 112/342 (32%), Gaps = 22/342 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKHEH 85 + +R ++ I + + + + H+ + A + P K Sbjct: 38 FDKILVANRGEIACRVIRTCKKMGIKTVAIHSDVDASSVHVKMADEAVCVGPAPTSKSYL 97 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + + P +G L E+ L ++ F+G D A A DK +K Sbjct: 98 NMDAIMEAIKKTRAQAVHPG-YGFLSENKEFARCLAAEDVVFIGPDTHAIQAMGDKIESK 156 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 L + A +N P + + ++G P+ +K + G G+ +E+ Sbjct: 157 LLAKKAEVNTIPGFDGVVKDA--EEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETR 214 Query: 206 IAV----DLAF--EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A D ++++E+ I R IE VLG+ + A E + Sbjct: 215 DGFRLSSQEAASSFGDDRLLIEKFIDNPRHIEIQVLGDKHGNALWLNER--ECSIQRRNQ 272 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K ++E + E + AV + + + V+ + + E+NT Sbjct: 273 KVVEE-----APSIFLDAETRRAMGEQAVALARAVKYSSAGTVEFLVDSKKNFYFLEMNT 327 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + P +GL + R+ + RH + Sbjct: 328 RLQVEH----PVTECITGLDLVQEMIRVAKGYPLRHKQADIR 365 >gb|AAG34683.1|AF310953_1 (AF310953) ligase VanB2 [Enterococcus faecium] Length = 342 Score = 236 bits (603), Expect = 2e-61 Identities = 123/357 (34%), Positives = 197/357 (54%), Gaps = 19/357 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V +FGG S EH+VS++SA I ID +FD +GI K G W + Sbjct: 1 MNRIKVATIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 D L P + + K +DV FP++HG GEDG++QG+ Sbjct: 61 -ADSLPAILSPDRKTHGLLVMKESE--------YETRRIDVAFPVLHGKCGEDGAIQGLF 111 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 ++ +P+VG D+ +SAACMDK + L ++AG+ + F + + ++ L Sbjct: 112 VLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPE------AGALTY 165 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-NP 239 P+FVKPA GSS G++KV E+ A++ A ++D K+++EQ I G E+ CAV+GN+ + Sbjct: 166 PVFVKPARSGSSFGLTKVNGTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDDL 225 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVV---PAAIAPEINDKIRAIAVQAYQTLGCA 296 +I L+ + + E G++ + PA I E ++++ A + Y+ LGC Sbjct: 226 IVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCR 285 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+ARVD+FL + +V+NE+NTLPGFT+ S YP++ A+G+ +I LI LAL+R Sbjct: 286 GLARVDLFLQEDGGIVLNEVNTLPGFTSYSRYPRMMAAAGITLPAMIDSLITLALKR 342 >ref|NP_032823.1| (NM_008797) pyruvate decarboxylase [Mus musculus] sp|Q05920|PYC_MOUSE Pyruvate carboxylase, mitochondrial precursor (Pyruvic carboxylase) (PCB) pir||A47255 pyruvate carboxylase (EC 6.4.1.1) precursor [similarity] - mouse gb|AAA39737.1| (L09192) pyruvate carboxylase [Mus musculus] Length = 1178 Score = 236 bits (602), Expect = 2e-61 Identities = 49/337 (14%), Positives = 103/337 (30%), Gaps = 23/337 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ--VPGKHE 84 I + +R ++ + + + + Y H A + + P + Sbjct: 37 IKKVMVANRGEIAIRVFRACTELGIRTVAVYSEQDTGQMHRQKADEAYLIGRGLAPVQAY 96 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D VD + P +G L E + A + F+G DK Sbjct: 97 LHIPDIIKVAKENGVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEA 155 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + + AG+ + P E + G P+ K A G G+ V S E+ Sbjct: 156 RAIAIAAGVPVVPGTD--SPISSLHEAHEFSNTFGFPIIFKAAYGGGGRGMRVVHSYEEL 213 Query: 205 AIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A + + VE+ I+ R IE +LG+ E Sbjct: 214 EENYTRAYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERD--CSIQRRH 271 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ + + P++ ++ + +V+ + +G V+ + + E+N Sbjct: 272 QKVVE-----IAPATHLDPQLRSRLTSDSVKLAKQVGYENAGTVEFLVDKHGKHYFIEVN 326 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 + + + + + + E Sbjct: 327 SRLQVEHT----VTEEITDVDLVHAQIHVSEGRSLPD 359 >ref|NP_254123.1| (NC_002516) probable biotin carboxylase subunit of a transcarboxylase [Pseudomonas aeruginosa] pir||G82966 probable biotin carboxylase subunit of a transcarboxylase PA5436 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG08821.1|AE004956_5 (AE004956) probable biotin carboxylase subunit of a transcarboxylase [Pseudomonas aeruginosa] Length = 471 Score = 236 bits (602), Expect = 3e-61 Identities = 57/341 (16%), Positives = 109/341 (31%), Gaps = 22/341 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 I + +R ++ + + + + + Y H+ A S+ P Sbjct: 1 MIKKILIANRGEIAVRIVRACAEMGIRSVAVYSEADRHALHVKRADEAHSIGADPLAGYL 60 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 N D + P +G L E+ L + + F+G DK + Sbjct: 61 NPRALVNLAVESGCDALHPG-YGFLSENAELAEICAERGIKFIGPSAQVIRRMGDKTEAR 119 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 R + AG+ P A+ ++G P+ +K + G G+ + S E+ Sbjct: 120 RSMIAAGVPCTPGTEGNVAD--LAEALREAERIGYPVMLKATSGGGGRGIRRCNSREELE 177 Query: 206 IAVDLA------FEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A +V +E+ I + IE +L + E + Sbjct: 178 QAFPRVISEATKAFGSAEVFLEKCIVNPKHIEAQILADSFGNTVHLFERD--CSIQRRNQ 235 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K I+ + + PE I +AV+A + +G V+ L + EV E+NT Sbjct: 236 KLIE-----IAPSPQLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLL-ADGEVYFMEMNT 289 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 + + +G+ R+ D+ Sbjct: 290 RVQVEHT----ITEEITGIDVVREQIRIASGLELSVKQDDI 326 >ref|NP_102581.1| (NC_002678) propionyl-CoA carboxylase alpha chain precursor [Mesorhizobium loti] dbj|BAB48367.1| (AP002996) propionyl-CoA carboxylase alpha chain precursor [Mesorhizobium loti] Length = 670 Score = 236 bits (601), Expect = 3e-61 Identities = 50/342 (14%), Positives = 106/342 (30%), Gaps = 22/342 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HE 84 + +R ++ I + ++ + Y D H+ + A + P Sbjct: 1 MFTKILIANRGEIACRVIKTARKMGIATVAVYSDADRDAVHVEMADEAVHIGPSPAAQSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + P +G L E + L + F+G A A DK + Sbjct: 61 LVPEKIIAACKETGAQAVHPG-YGFLSERAAFCEALEKEGIVFIGPKPKAIKAMGDKIES 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K+ A ++ P N ++ ++G P+ +K + G G+ ++ + Sbjct: 120 KKFANAAKVSTVPGWLGVIENA--DHAEKIAGEIGYPVMIKASAGGGGKGMRIAWNQSEV 177 Query: 205 AIAVDLAF------EFDHKVIVEQG-IKGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 D A D +V +E+ + R IE VL + + A GE + Sbjct: 178 RDGFDRARSEAKSSFGDDRVFIEKFVVDPRHIEIQVLADAHGNALYLGER--ECSIQRRN 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K +E + + + +V + + V+ + + E+N Sbjct: 236 QKVAEE-----APSPFLDAKTRKAMGEQSVALARAVDYQSAGTVEFIVDKDKNFYFLEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 T + P +G+ + + R+ + Sbjct: 291 TRLQVEH----PVTELVTGIDLVEQMIRVAAGEKLSLKQSDI 328 >ref|NP_349497.1| (NC_003030) D-alanine-D-alanine ligase [Clostridium acetobutylicum] gb|AAK80837.1|AE007787_3 (AE007787) D-alanine-D-alanine ligase [Clostridium acetobutylicum] Length = 343 Score = 236 bits (601), Expect = 3e-61 Identities = 137/355 (38%), Positives = 212/355 (59%), Gaps = 20/355 (5%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K +V I+FGG+S EHEVS SA +++ ID S++D+ +GI K+G+W S + Sbjct: 2 KKKVAILFGGQSTEHEVSRVSAASVLRNIDTSKYDLFPIGITKKGEWFEYTGSADKIENG 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + S A + K VDV+FP++HG GEDG++QG+ ++ Sbjct: 62 EWEKDEFYKSPNGQAILFNK---------------EVDVVFPVMHGLYGEDGTIQGLCKL 106 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR---HNISFAEVESKLG 179 +P VG VL+S+ CMDK TK +L + A ++ + E+E+KLG Sbjct: 107 VGVPCVGPSVLSSSVCMDKVYTKYVLEHFNIKQADYVVVHAHEYKTSKEEIIKEIENKLG 166 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP 239 +F+KP+N GSSVG++K + ++ ++ A ++D K++VE+ + REIE AVLGN+ P Sbjct: 167 YAVFIKPSNSGSSVGITKAHNRKELEAGLEEAMKYDRKILVEEALNAREIEVAVLGNEEP 226 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMA 299 +A+ GEIV +FY Y+ KY + ++PA ++ E +KI+ IA++ Y+ L C+GM+ Sbjct: 227 KAAIPGEIVPAKEFYDYEAKYENAASKL-LIPANLSNENLEKIKNIAIEVYKALDCSGMS 285 Query: 300 RVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 RVD + + E+ +NE+NT+PGFT+ISMYPKLW A+G Y+ LI LIELA R Sbjct: 286 RVDFLVDKDTTEMYLNEVNTIPGFTSISMYPKLWAAAGKDYSKLIDELIELAASR 340 >ref|NP_104954.1| (NC_002678) pyruvate carboxylase [Mesorhizobium loti] dbj|BAB50740.1| (AP003003) pyruvate carboxylase [Mesorhizobium loti] Length = 1152 Score = 236 bits (601), Expect = 4e-61 Identities = 46/341 (13%), Positives = 106/341 (30%), Gaps = 30/341 (8%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG--- 81 I + +R ++ + + + + + H + + + P Sbjct: 1 MAITKILVANRSEIAIRVFRAANELGLKTVAIWAEEDKYSLHRFKADESYQVGRGPHLTK 60 Query: 82 -----KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASA 136 + + + L D I P +G L E A + F+G Sbjct: 61 DMGPIESYLSIEEVIRVARLSGADAIHPG-YGLLSESPEFAEACAQAGITFIGPKPDTMR 119 Query: 137 ACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVS 196 +K + L + G+ + P + ++ ++G P+ +K + G G+ Sbjct: 120 RLGNKVAARNLAIEVGVPVIPATDPLP--DDMEAVKKLAKEIGYPVMLKASWGGGGRGMR 177 Query: 197 KVTSEEQYAIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVL 249 + SE A V A +V +E+ I+ R +E VLG+ + A E Sbjct: 178 AIRSEADLAREVTEGKREAKAAFGKDEVYLEKLIERARHVEVQVLGDTHGNAVHLFERD- 236 Query: 250 TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE- 308 + K ++ + +++ A++ + G V+ + Sbjct: 237 -CSIQRRNQKVVE-----RAPAPYLEMSQREELCGYALKIARETSYIGAGTVEFLQDADT 290 Query: 309 NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 + E+N + Q +G+ +++ Sbjct: 291 GKFYFIEVNPRIQVEHT----VTEQVTGIDIVKAQIHILDG 327 >gb|AAB92588.1| (AF038548) pyruvate carboxylase [Corynebacterium glutamicum] emb|CAA70739.1| (Y09548) pyruvate carboxylase [Corynebacterium glutamicum] Length = 1140 Score = 235 bits (600), Expect = 4e-61 Identities = 57/337 (16%), Positives = 108/337 (31%), Gaps = 24/337 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA--QVPGKH 83 + +R ++ + + + + Y H + A + P K Sbjct: 11 AFKKILVANRGEIAVRAFRAALETGAATVAIYPREDRGSFHRSFASEAVRIGTEGSPVKA 70 Query: 84 EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + + D I+P +G L E+ L + F+G DK Sbjct: 71 YLDIDEIIGAAKKVKADAIYPG-YGFLSENAQLARECAENGITFIGPTPEVLDLTGDKSR 129 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 + AGL + T +++ + P+FVK G G+ V S ++ Sbjct: 130 AVTAAKKAGLPVLAEST---PSKNIDEIVKSAEGQTYPIFVKAVAGGGGRGMRFVASPDE 186 Query: 204 YAIAV------DLAFEFDHKVIVEQG-IKGREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 A D V VE+ I + IE +LG+ + E Sbjct: 187 LRKLATEASREAEAAFGDGAVYVERAVINPQHIEVQILGDHTGEVVHLYERD--CSLQRR 244 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEI 316 K ++ + + PE+ D+I A AV+ +++G G V+ + + V E+ Sbjct: 245 HQKVVE-----IAPAQHLDPELRDRICADAVKFCRSIGYQGAGTVEFLVDEKGNHVFIEM 299 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 N + + + + RL A + Sbjct: 300 NPRIQVEHT----VTEEVTEVDLVKAQMRLAAGATLK 332 >ref|NP_350153.1| (NC_003030) Biotin carboxylase [Clostridium acetobutylicum] gb|AAK81493.1|AE007853_8 (AE007853) Biotin carboxylase [Clostridium acetobutylicum] Length = 447 Score = 235 bits (600), Expect = 5e-61 Identities = 52/342 (15%), Positives = 112/342 (32%), Gaps = 22/342 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKH-E 84 I + +R ++ + I + + + Y + H+ L A + + Sbjct: 1 MISKILIANRGEIAVRIIRACREMGIETVAIYSEADKESMHVYLADEAVCVGPAKTQDSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + L I P G L E+G M N+ F+G D +K Sbjct: 61 LNIGNIISATVLTKAQAIHPGF-GFLSENGKFAKMCSECNIAFIGPDAETIENMGNKAKA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + ++ AG+ + P T + +++G P+ +K + G G+ V E+ Sbjct: 120 REIMIKAGVPVVPGCEGTI--DSEDQALKEATRIGYPVMLKASAGGGGRGIRIVREEKDL 177 Query: 205 AIAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + A D + +E+ I + R +E +LG+ GE + Sbjct: 178 ISSFRNAKSEAKAAFGDDSMYMEKFIEEPRHVEFQILGDSFGNVVYLGERD--CSIQRRN 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E + E+ ++ AV+A + + ++ L E+N Sbjct: 236 QKVLEE-----APSPVMTEELRREMGEAAVRAAKAVNYKNAGTIEFLLDKHGNYYFMEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 T + +G+ ++ + Sbjct: 291 TRIQVEHG----ITEMVTGVDLVKEQIKIASGNKLSFNQSDI 328 >ref|NP_000911.1| (NM_000920) pyruvate carboxylase precursor [Homo sapiens] ref|NP_071504.1| (NM_022172) pyruvate carboxylase precursor [Homo sapiens] pir||G01933 pyruvate carboxylase (EC 6.4.1.1) precursor - human pir||JC2460 pyruvate carboxylase (EC 6.4.1.1) precursor - human gb|AAA82937.1| (U30891) pyruvate carboxylase precursor [Homo sapiens] Length = 1178 Score = 235 bits (599), Expect = 6e-61 Identities = 50/337 (14%), Positives = 104/337 (30%), Gaps = 23/337 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ--VPGKHE 84 I + +R ++ + + + + Y H A + + P + Sbjct: 37 IKKVMVANRGEIAIRVFRACTELGIRTVAIYSEQDTGQMHRQKADEAYLIGRGLAPVQAY 96 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D VD + P +G L E + A + F+G DK Sbjct: 97 LHIPDIIKVAKENNVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEA 155 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + + AG+ + P E + G P+ K A G G+ V S E+ Sbjct: 156 RAIAIAAGVPVVPGTDAPIT--SLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEEL 213 Query: 205 AIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A + + VE+ I+ R IE +LG+ E Sbjct: 214 EENYTRAYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERD--CSIQRRH 271 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ + A + P++ ++ + +V+ + +G V+ + + E+N Sbjct: 272 QKVVE-----IAPAAHLDPQLRTRLTSDSVKLAKQVGYENAGTVEFLVDRHGKHYFIEVN 326 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 + + + + + + E Sbjct: 327 SRLQVEHT----VTEEITDVDLVHAQIHVSEGRSLPD 359 >gb|AAB31500.1| (S72370) pyruvate carboxylase; pyruvate:carbon dioxide ligase [Homo sapiens] Length = 1178 Score = 235 bits (599), Expect = 7e-61 Identities = 50/337 (14%), Positives = 104/337 (30%), Gaps = 23/337 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ--VPGKHE 84 I + +R ++ + + + + Y H A + + P + Sbjct: 37 IKKVMVANRGEIAIRVFRACTELGIRTVAIYSEQDTGQMHRQKADEAYLIGRGLAPVQAY 96 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D VD + P +G L E + A + F+G DK Sbjct: 97 LHIPDIIKVAKENNVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEA 155 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + + AG+ + P E + G P+ K A G G+ V S E+ Sbjct: 156 RAIAIAAGVPVVPGTDAPIT--SLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEEL 213 Query: 205 AIAVDLA------FEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A + + VE+ I+ R IE +LG+ E Sbjct: 214 EENYTRAYSEAWPAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERD--CSIQRRH 271 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ + A + P++ ++ + +V+ + +G V+ + + E+N Sbjct: 272 QKVVE-----IAPAAHLDPQLRTRLTSDSVKLAKQVGYENAGTVEFLVDRHGKHYFIEVN 326 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 + + + + + + E Sbjct: 327 SRLQVEHT----VTEEITDVDLVHAQIHVAEGRSLPD 359 >sp|P11498|PYC_HUMAN Pyruvate carboxylase, mitochondrial precursor (Pyruvic carboxylase) (PCB) gb|AAA99537.1| (U04641) pyruvate: carbon-dioxide ligase (ADP-forming) [Homo sapiens] gb|AAH11617.1|AAH11617 (BC011617) pyruvate carboxylase [Homo sapiens] prf||2023166A pyruvate carboxylase [Homo sapiens] Length = 1178 Score = 234 bits (598), Expect = 7e-61 Identities = 50/337 (14%), Positives = 104/337 (30%), Gaps = 23/337 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ--VPGKHE 84 I + +R ++ + + + + Y H A + + P + Sbjct: 37 IKKVMVANRGEIAIRVFRACTELGIRTVAIYSEQDTGQMHRQKADEAYLIGRGLAPVQAY 96 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D VD + P +G L E + A + F+G DK Sbjct: 97 LHIPDIIKVAKENNVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEA 155 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + + AG+ + P E + G P+ K A G G+ V S E+ Sbjct: 156 RAIAIAAGVPVVPGTDAPIT--SLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEEL 213 Query: 205 AIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A + + VE+ I+ R IE +LG+ E Sbjct: 214 EENYTRAYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERD--CSIQRRH 271 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ + A + P++ ++ + +V+ + +G V+ + + E+N Sbjct: 272 QKVVE-----IAPAAHLDPQLRTRLTSDSVKLAKQVGYENAGTVEFLVDRHGKHYFIEVN 326 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 + + + + + + E Sbjct: 327 SRLQVEHT----VTEEITDVDLVHAQIHVAEGRSLPD 359 >ref|NP_297342.1| (NC_002488) biotin carboxylase subunit of acetyl CoA carboxylase [Xylella fastidiosa 9a5c] pir||E82853 biotin carboxylase subunit of acetyl CoA carboxylase XF0049 [imported] - Xylella fastidiosa (strain 9a5c) gb|AAF82862.1|AE003859_3 (AE003859) biotin carboxylase subunit of acetyl CoA carboxylase [Xylella fastidiosa 9a5c] Length = 469 Score = 234 bits (598), Expect = 7e-61 Identities = 51/341 (14%), Positives = 109/341 (31%), Gaps = 22/341 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 + + +R ++ L + + + + + H+A+ + + P + Sbjct: 15 MLDKVVIANRGEIALRILRACHTLGIRTVAVHSTVDRNLKHVAMADESVCIGSAPSAESY 74 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + I P +G L E+ S + + F+G DK Sbjct: 75 LNIPALIAAAEVTDAQAIHPG-YGFLSENASFAERVEQSGFIFIGPRAETIRLMGDKVQA 133 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 ++ AG+ P + + + ++G P+ +K A G G+ V +E Sbjct: 134 IHAMKAAGVPCVPGSDGPLGDDIVANVK-IAREIGYPVIIKAAGGGGGRGMRVVHTEVGL 192 Query: 205 AIAVD------LAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A++ A + +V +E+ + R +E VL + A GE Sbjct: 193 KAAIETTQSEAKAAFGNGQVYMEKFLENPRHVEIQVLADGQGNAIHLGERD--CSMQRRH 250 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E I + ++I + V A +G G + E+N Sbjct: 251 QKVVEE-----APAPGITEALRNEIGQVCVDACIRIGYRGAGTFEFLF-ENGRFYFIEMN 304 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 T + P + +G+ R+ + Sbjct: 305 TRIQVEH----PVTERITGIDLVCEQLRIAAGQPLSIKQSD 341 >gb|AAD51060.1|AF175293_5 (AF175293) D-alanine:D-lactate ligase [Enterococcus faecium] Length = 343 Score = 234 bits (597), Expect = 9e-61 Identities = 123/357 (34%), Positives = 201/357 (55%), Gaps = 18/357 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +++V ++FGG S EH VS++SA I ID ++ +GI K G W + + Sbjct: 1 MFRIKVAVLFGGCSEEHNVSIKSAMEIAANIDTKKYQPYYIGITKSGVWKMCEKPCLEWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 + P ++ + K G + VDV P++HG GEDGS+QG+L Sbjct: 61 QYAGDPVVFSPDRSTHGLLIQKD--------TGYEIQPVDVGLPMIHGKFGEDGSIQGLL 112 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 ++ +P+VG D+ +S CMDK + ++++AG+ + F L +R Sbjct: 113 ELSGIPYVGCDIQSSVTCMDKALAYTVVKNAGIAVPGFRILQEGDRLET------EDFVY 166 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN-P 239 P+FVKPA GSS GV+KV E+ A++ A ++D K+++E+ + G E+ CA+LGN N Sbjct: 167 PVFVKPARSGSSFGVNKVCKAEELQAAIEDARKYDSKILIEEAVTGSEVGCAILGNGNDL 226 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKVV---VPAAIAPEINDKIRAIAVQAYQTLGCA 296 A +I L F+ + E G++ VPAA+ E+ ++I+ A++ Y+ LGC Sbjct: 227 MAGEVDQIELRHGFFKIHQEAQPEKGSENAVIRVPAALPDEVIERIQKTAMKIYRILGCR 286 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G+AR+D+FL + +V+NE+NT+PGFT+ S YP++ A+G T+++ RLIEL+L R Sbjct: 287 GLARIDLFLREDGCIVLNEVNTMPGFTSYSRYPRMMTAAGFTLTEILDRLIELSLRR 343 >emb|CAB87214.1| (AL163641) acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces coelicolor A3(2)] Length = 646 Score = 234 bits (597), Expect = 1e-60 Identities = 62/345 (17%), Positives = 112/345 (31%), Gaps = 24/345 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 + +R ++ + I V + + D H+ A + P + Sbjct: 1 MFDTVLVANRGEIAVRVIRTLRSMGVRSVAVFSDADADARHVREADDAVRIGPAPATESY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + P +G L E+ A L F+G A A DK Sbjct: 61 LSVERLLAAAARTGAQAVHPG-YGFLAENAGFARACEEAGLVFIGPSADAIALMGDKIRA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K +R AG+ + P + + + A+ ++G P+ +KP+ G G+ V Sbjct: 120 KETVRAAGVPVVPGSSGSGL--TDEQLADAAREIGTPVLLKPSAGGGGKGMRLVRDTAVL 177 Query: 205 AIAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A + A D ++VE+ I R IE VL + + GE Sbjct: 178 ADEIAAARREARASFGDDTLLVERWIDRPRHIEIQVLADGHGGVVHLGER--ECSLQRRH 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPEN--EVVINE 315 K I+E + + AVQA ++ G G V+ + + + E Sbjct: 236 QKVIEE-----APSVLLDEATRAAMGEAAVQAARSCGYRGAGTVEFIVPGSDPSQYYFME 290 Query: 316 INTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 +NT + P +GL + R+ ++ Sbjct: 291 MNTRLQVEH----PVTELVTGLDLVEWQLRVAAGEPLGFGQEDVR 331 >ref|NP_300241.1| (NC_002491) biotin carboxylase [Chlamydophila pneumoniae J138] ref|NP_445129.1| (NC_002179) acetyl-coenzyme A carboxylase, biotin carboxylase [Chlamydophila pneumoniae AR39] pir||G81560 acetyl-coenzyme A carboxylase, biotin carboxylase CP0586 [imported] - Chlamydophila pneumoniae (strain AR39) gb|AAF38404.1| (AE002217) acetyl-coenzyme A carboxylase, biotin carboxylase [Chlamydophila pneumoniae AR39] dbj|BAA98392.1| (AP002545) biotin carboxylase [Chlamydophila pneumoniae J138] Length = 454 Score = 234 bits (596), Expect = 1e-60 Identities = 58/341 (17%), Positives = 116/341 (34%), Gaps = 22/341 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKHEH 85 + + +R ++ + I +S + Y L + H+ L A + + K Sbjct: 1 MKKVLIANRGEIAVRIIRACHDLGLSTVAVYSLADQEALHVLLADEAICIGEPQAAKSYL 60 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 ++ + + D + P +G L E+ + + L F+G + A DK K Sbjct: 61 KISNILAACEITGADAVHPG-YGFLSENANFASICESCGLTFIGPSSESIAMMGDKIAAK 119 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 L + + P + ++ K+G P+ +K G G+ V ++++ Sbjct: 120 SLAKKIKCPVIPGSEGIIEDESE--GLKIAEKIGFPIVIKAVAGGGGRGIRIVKEKDEFY 177 Query: 206 IAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A A + V +E+ I R +E V+G+ + GE Sbjct: 178 RAFSAARAEAEAGFNNPNVYIEKFIENPRHLEIQVIGDTHGNYVHLGERD--CTIQRRRQ 235 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K I+E + EI K+ IAV ++ G + V+ L + + E+NT Sbjct: 236 KLIEE-----TPSPILNAEIRVKVGKIAVDLARSAGYFSVGTVEFLLDKDKKFYFMEMNT 290 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 + + +G+ + N Sbjct: 291 RIQVEHT----ITEEVTGIDLVKEQIHVAMGNKLPWKQKNI 327 >ref|NP_293843.1| (NC_001263) acetyl-CoA carboxylase, biotin carboxylase subunit [Deinococcus radiodurans] pir||B75558 acetyl-CoA carboxylase, biotin carboxylase subunit - Deinococcus radiodurans (strain R1) gb|AAF09707.1|AE001874_4 (AE001874) acetyl-CoA carboxylase, biotin carboxylase subunit [Deinococcus radiodurans] Length = 445 Score = 234 bits (596), Expect = 1e-60 Identities = 49/341 (14%), Positives = 111/341 (32%), Gaps = 24/341 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA-QVPGKHE 84 + +R ++ L I + + Y + + L + + + Sbjct: 1 MFKKILIANRGEIALRVIRTAREMGIQTVVVYSTADEKSLPVLLADESVCVGPPASNQSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + + + I P +G + E+ M R + F+G + A K Sbjct: 61 LNIPNILSAALMTGAEAIHPG-YGFMAENPDFAEMCREHGIVFIGPTPESMRALGSKAGG 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + + + + P + + ++G P+ +K + G G + ++E+ Sbjct: 120 REIAAQSNVPTVPGTGVL---ESVDAALLAAKQIGYPVLLKASAGGGGRGQKVIRTQEEL 176 Query: 205 AIAVDLA------FEFDHKVIVEQGIKGR-EIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + A + D +I+E+ ++ IE V+G+ GE + Sbjct: 177 QKGFNQAQEEARLYFGDPAIIMEKFLEEFRHIEVQVMGDGQGHVIHIGERD--CSIQRRN 234 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E P+ + + +I A V+ Q + AG ++ + + E+N Sbjct: 235 QKLIEE------APSTLPESLRQEILAAGVRLAQFVNYAGAGTLEFIMDRDGNYYFMEMN 288 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 T + S L L + D+ Sbjct: 289 TRIQVEHC----VSEMISSLDLVRLQIEIAAGLGLNIQQDD 325 >gb|AAA88512.1| (M22631) alpha-propionyl-CoA carboxylase (EC 6.4.1.3) [Rattus norvegicus] Length = 721 Score = 233 bits (595), Expect = 2e-60 Identities = 56/342 (16%), Positives = 113/342 (32%), Gaps = 22/342 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKHEH 85 + +R ++ I + + + + H+ + A + P K Sbjct: 56 FDKILIANRGEIACRVIKTCRKMGIRTVAIHSDVDASSVHVKMADEAVCVGPAPTSKSYL 115 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + + P +G L E+ L ++ F+G D A A DK +K Sbjct: 116 NMDAIMEAIKKTGAQAVHPG-YGFLSENKEFAKCLAAEDVTFIGPDTHAIQAMGDKIESK 174 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 L + A +N P + + ++G P+ +K + G G+ +E+ Sbjct: 175 LLAKRAKVNTIPGFDGVLKDA--DEAVRIAREIGYPVMIKASAGGGGKGMRIPWDDEETR 232 Query: 206 IAV----DLAF--EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A D ++++E+ I R IE VLG+ + A E + Sbjct: 233 DGFRFSSQEAASSFGDDRLLIEKFIDNPRHIEIQVLGDKHGNALWLNER--ECSIQRRNQ 290 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K ++E + PE + AV + + + V+ + + E+NT Sbjct: 291 KVVEE-----APSIFLDPETRRAMGEQAVAWPKAVKYSSAGTVEFLVDSQKNFYFLEMNT 345 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + P +GL + + + RH ++ Sbjct: 346 RLQVEH----PVTECITGLDLVQEMILVAKGYPLRHKQEDIP 383 >ref|NP_355659.1| (NC_003062) AGR_C_4940p [Agrobacterium tumefaciens] [Agrobacterium tumefaciens str. C58 (Cereon)] ref|NP_533391.1| (NC_003304) pyruvate carboxylase [Agrobacterium tumefaciens str. C58 (U. Washington)] gb|AAK88444.1| (AE008185) AGR_C_4940p [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAL43707.1| (AE009219) pyruvate carboxylase [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 1174 Score = 233 bits (595), Expect = 2e-60 Identities = 43/362 (11%), Positives = 109/362 (29%), Gaps = 31/362 (8%) Query: 6 VGIVFGG-KSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 V +++ + ++ I + +R ++ + + + + + Sbjct: 2 VLLLYSAVQQNSVLACGETVLKISKILVANRSEIAIRVFRAANELGIKTVAIWAEEDKLS 61 Query: 65 AHIALRPSATSLAQVPG--------KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 H + + + P + + + L D I P +G L E Sbjct: 62 LHRFKADESYQVGRGPHLAKDMGPIESYLSIEEVIRVAKLSGADAIHPG-YGLLSESPEF 120 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 A + F+G +K + L + + P + Sbjct: 121 VEACNKAGITFIGPTPDTMRQLGNKVAARNLAISVDVPVVP--ATNPLPDDIAEVERMAE 178 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDL------AFEFDHKVIVEQGIK-GREI 229 ++G P+ +K + G G+ + +E A V A +V +E+ ++ R + Sbjct: 179 EIGYPVMLKASWGGGGRGMRAIRKKEDLAREVTEAKREAKAAFGKDEVYLEKLVERARHV 238 Query: 230 ECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 E +LG+ + E + K ++ ++ ++ A +++ Sbjct: 239 ESQILGDTHGNVVHLFERD--CSIQRRNQKVVE-----RAPAPYLSEAQRQELAAYSLKI 291 Query: 290 YQTLGCAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 G V+ + + + E+N + +G+ ++E Sbjct: 292 AAATNYIGAGTVEYLMDADTGKFYFIEVNPRIQVEHT----VTEVVTGIDIVKAQIHILE 347 Query: 349 LA 350 A Sbjct: 348 GA 349 >gb|AAF09095.1|AF068759_1 (AF068759) pyruvate carboxylase [Lactococcus lactis subsp. lactis] Length = 1137 Score = 233 bits (594), Expect = 2e-60 Identities = 53/339 (15%), Positives = 107/339 (30%), Gaps = 25/339 (7%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV--PGKHE 84 + + +R ++ + + +S + Y + H + + Q P Sbjct: 1 MKKLLVANRGEIAVRVFRACNELGLSTVAVYAREDEYSVHRFKADESYLIGQGKKPIDAY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D D I P +G L E+ +R A L FVG ++ DK Sbjct: 61 LDIDDIIRVALESGADAIHPG-YGLLSENLEFATKVRAAGLVFVGPELHHLDIFGDKIKA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K +A + P T E G P+ +K A G G+ ++ + Sbjct: 120 KAAADEAQVPGIPG---TNGAVDIDGALEFAQTYGYPVMIKAALGGGGRGMRVARNDAEM 176 Query: 205 AIAVDLA------FEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A ++ VE+ I + IE +LG+ + E + Sbjct: 177 HDGYARAKSEAIGAFGSGEIYVEKYIENPKHIEVQILGDSHGNIVHLHERD--CSVQRRN 234 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+ + ++PE ++I AV+ + +G V+ + +++ E+N Sbjct: 235 QKVIE-----IAPAVGLSPEFRNEICEAAVKLCKNVGYVNAGTVEFLV-KDDKFYFIEVN 288 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAA 356 + +G+ + + Sbjct: 289 PRVQVEHT----ITELITGVDIVQAQILIAQGKDLHTEI 323 >dbj|BAB16297.1| (AB039884) acetyl-CoA carboxylase biotin carboxylase subunit [Myxococcus xanthus] Length = 573 Score = 233 bits (594), Expect = 2e-60 Identities = 62/339 (18%), Positives = 116/339 (33%), Gaps = 22/339 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQ 86 + +R ++ + I + S + + H+ A ++ P K + Sbjct: 4 FKKVLIANRGEIAVRVIRTCQRLGYSTVAVFSEADRGAPHVLAADEAVAIGPSPAKESYL 63 Query: 87 LID-AQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 +I + I P +G L E+ R A L F+G + A +K Sbjct: 64 VIGKILEAAKTSGAEAIHPG-YGFLSENADFARACRDAGLVFIGPEAEAITLMGNKRQAN 122 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 + AG+ P + + + A ++G PL VK A G G+ V Q Sbjct: 123 VRMIAAGVPCIPGYEASDLDD--EALAVEGERIGFPLMVKAAAGGGGRGMRLVHEASQLR 180 Query: 206 IAVDLA------FEFDHKVIVEQG-IKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A+ A ++I+E+ I R +E V + + GE Sbjct: 181 AALRAARSEATNAFGSGELILEKAVIDARHVEVQVFADTHGNVVHLGERD--CSVQRRHQ 238 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K ++E A++P + ++ +AV A + +G G ++ L P + E+NT Sbjct: 239 KIVEE-----SPSPAVSPALRARMGEVAVAAARAIGYRGAGTIEFLLAPSGDFYFMEMNT 293 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 + P +GL + R+ + Sbjct: 294 RLQVEH----PVTELITGLDLVEWQLRVAAGETLPRTQE 328 >emb|CAB64483.1| (AJ243058) D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 233 bits (594), Expect = 2e-60 Identities = 129/358 (36%), Positives = 202/358 (56%), Gaps = 14/358 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K + +++GG+SAE EVS+ SA++++ A++ RF V I + G + + + + Sbjct: 2 KQTIILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQE 61 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 D V+FP++HG +GEDGS+QG L V Sbjct: 62 DRLMT-------------NATIDWDKQVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEV 108 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 +P+VG ++L+S+ MDK TKR+L AG+ P++ + + AEVE KL P+ Sbjct: 109 LKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDLTAKIAEVEEKLTYPV 168 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAS 242 F KP+N GSSVG+SK ++E+ A+ LAF++D +V+VEQG+ REIE +LGN + +++ Sbjct: 169 FTKPSNMGSSVGISKSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKST 228 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 GE+V FY YD KYID + +PA I+ ++ +R A A++ +G G++R + Sbjct: 229 LPGEVVKDVAFYDYDAKYIDNK-ITMDIPAKISDDVVPIMRQNAKTAFRAIGGLGLSRCN 287 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 F T + E+ +N++NT+PGFT SMYP LW + Y DLI RL++LA E A Sbjct: 288 FFYTDKGEISLNKLNTMPGFTQWSMYPLLWDNMRISYPDLIERLVDLAKESFDKREAH 345 >sp|P14882|PCCA_RAT PROPIONYL-COA CARBOXYLASE ALPHA CHAIN, MITOCHONDRIAL PRECURSOR (PCCASE ALPHA SUBUNIT) (PROPANOYL-COA:CARBON DIOXIDE LIGASE ALPHA SUBUNIT) Length = 704 Score = 233 bits (594), Expect = 2e-60 Identities = 56/342 (16%), Positives = 113/342 (32%), Gaps = 22/342 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKHEH 85 + +R ++ I + + + + H+ + A + P K Sbjct: 39 FDKILIANRGEIACRVIKTCRKMGIRTVAIHSDVDASSVHVKMADEAVCVGPAPTSKSYL 98 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + + P +G L E+ L ++ F+G D A A DK +K Sbjct: 99 NMDAIMEAIKKTGAQAVHPG-YGFLSENKEFAKCLAAEDVTFIGPDTHAIQAMGDKIESK 157 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 L + A +N P + + ++G P+ +K + G G+ +E+ Sbjct: 158 LLAKRAKVNTIPGFDGVLKDA--DEAVRIAREIGYPVMIKASAGGGGKGMRIPWDDEETR 215 Query: 206 IAV----DLAF--EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A D ++++E+ I R IE VLG+ + A E + Sbjct: 216 DGFRFSSQEAASSFGDDRLLIEKFIDNPRHIEIQVLGDKHGNALWLNER--ECSIQRRNQ 273 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K ++E + PE + AV + + + V+ + + E+NT Sbjct: 274 KVVEE-----APSIFLDPETRRAMGEQAVAWPKAVKYSSAGTVEFLVDSQKNFYFLEMNT 328 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + P +GL + + + RH ++ Sbjct: 329 RLQVEH----PVTECITGLDLVQEMILVAKGYPLRHKQEDIP 366 >ref|NP_224391.1| (NC_000922) Biotin Carboxylase [Chlamydophila pneumoniae CWL029] pir||E72110 biotin carboxylase - Chlamydophila pneumoniae (strain CWL029) gb|AAD18335.1| (AE001604) Biotin Carboxylase [Chlamydophila pneumoniae CWL029] Length = 454 Score = 233 bits (594), Expect = 2e-60 Identities = 57/341 (16%), Positives = 116/341 (33%), Gaps = 22/341 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKHEH 85 + + +R ++ + I +S + Y L + H+ L A + + K Sbjct: 1 MKKVLIANRGEIAVRIIRACHDLGLSTVAVYSLADQEALHVLLADEAICIGEPQAAKSYL 60 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 ++ + + D + P +G L E+ + + L F+G + A DK K Sbjct: 61 KISNILAACEITGADAVHPG-YGFLSENANFASICESCGLTFIGPSSESIAMMGDKIAAK 119 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 L + + P + ++ K+G P+ +K G G+ V ++++ Sbjct: 120 SLAKKIKCPVIPGSEGIIEDESE--GLKIAEKIGFPIVIKAVAGGGGRGIRIVKEKDEFY 177 Query: 206 IAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A A + V +E+ I R +E V+G+ + GE Sbjct: 178 RAFSAARAEAEAGFNNPNVYIEKFIENPRHLEIQVIGDTHGNYVHLGERD--CTIQRRRQ 235 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K I+E + EI K+ +AV ++ G + V+ L + + E+NT Sbjct: 236 KLIEE-----TPSPILNAEIRVKVGKVAVDLARSAGYFSVGTVEFLLDKDKKFYFMEMNT 290 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 + + +G+ + N Sbjct: 291 RIQVEHT----ITEEVTGIDLVKEQIHVAMGNKLPWKQKNI 327 >gb|AAF32338.1|AF218939_6 (AF218939) acetyl-CoA carboxylase [Bacillus subtilis] Length = 430 Score = 232 bits (593), Expect = 3e-60 Identities = 60/330 (18%), Positives = 117/330 (35%), Gaps = 22/330 (6%) Query: 40 LLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV-PGKHEHQLIDAQNGQPLPT 98 + I + + A+ Y D H A + + + + Sbjct: 1 MRIIRTCSRLGIKTAAVYSEADRDALHTKAATEAYYIGESRVSESYLNIERIIEAAKKAN 60 Query: 99 VDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPF 158 D I P +G L E+ + N+ F+G A K ++ + +AG+ + P Sbjct: 61 ADAIHPG-YGLLSENSRFAQRCKEENIVFIGPSPAVIAKIGSKIKARKAMEEAGVPVVPG 119 Query: 159 ITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVD------LAF 212 ++ + + + S++G P+ +K + G +G+ V EE A + F Sbjct: 120 VSESLGD--IQAACLAASEIGYPVMLKASAGGGGIGMQLVPDEEALIKAYEGNKKRAADF 177 Query: 213 EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVP 271 D + +E+ I+ R IE +L + + A E K I+E Sbjct: 178 FGDGSMYIEKVIEHARHIEIQILADHHGHAVHLFERD--CSVQRRHQKVIEE-----APS 230 Query: 272 AAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKL 331 + E+ KI AV+A + +G A ++ + E+NT + P Sbjct: 231 PFVDDELRMKIGETAVKAAKAIGYANAGTIEFLVDENKNFYFLEMNTRLQVEH----PVT 286 Query: 332 WQASGLGYTDLITRLIELALERHAADNALK 361 + +GL + R+ E R + + + Sbjct: 287 EEITGLDLVEQQLRVAEGQTLRFSQQDIKR 316 >ref|NP_107983.1| (NC_002678) 3-methylcrotonyl-CoA carboxylase biotin-containing subunit [Mesorhizobium loti] dbj|BAB54128.1| (AP003012) 3-methylcrotonyl-CoA carboxylase biotin-containing subunit [Mesorhizobium loti] Length = 694 Score = 232 bits (593), Expect = 3e-60 Identities = 60/349 (17%), Positives = 113/349 (32%), Gaps = 27/349 (7%) Query: 24 AKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA-QVPGK 82 + +R ++ I + V + Y H+ + A + G+ Sbjct: 39 GSMFSKILIANRGEIACRVIRTARKMGVRTVAVYSDADAKSLHVEMADEAVHIGPPSVGE 98 Query: 83 HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKD 142 + I P +G L E+ + A L F+G + A KD Sbjct: 99 SYLRGDRIVAAALSTGAQAIHPG-YGFLSENPDFVDQVVAAGLTFIGPSAASIRAMGLKD 157 Query: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEE 202 KRL+ AG+ + P A ++G P+ +K G G+ +V + Sbjct: 158 AAKRLMEKAGVPVVPGYHGEAQEIVL--LASKAREIGYPVLIKARAGGGGKGMRRVEHPD 215 Query: 203 QYAIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYA 255 ++ A+ A D +V+VE+ + R IE V G++ A E Sbjct: 216 DFSEALSSARREAKAAFGDDRVLVEKYVDKPRHIEVQVFGDNFGNAVHLYERD--CSAQR 273 Query: 256 YDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE-----NE 310 K I+E + P + + AV+A + +G +G ++ + + Sbjct: 274 RHQKVIEE-----APAPGMTPALRKAMTEAAVKAAKAIGYSGAGTIEFIVDASQGLKPDR 328 Query: 311 VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 E+NT + P +G + R+ + Sbjct: 329 FWFMEMNTRLQVEH----PVTEMVTGTDLVEWQLRVASGEKLPNTQSEI 373 >emb|CAA70282.1| (Y09061) acetyl-CoA carboxylase, biotin carboxylase subunit [Arabidopsis thaliana] Length = 539 Score = 232 bits (592), Expect = 3e-60 Identities = 52/338 (15%), Positives = 110/338 (32%), Gaps = 21/338 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLI 88 + +R ++ + I + + + Y D H+ L A + + P + +I Sbjct: 76 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADEAVCIGEAPSNQSYLVI 135 Query: 89 DAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLL 148 + + +G L E+ M R + F+G + DK + + Sbjct: 136 PNVLSAAISRGCTMLHPGYGFLSENALFVEMCRDHGINFIGPNPDTIRVMGDKATARETM 195 Query: 149 RDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV 208 ++AG+ P + V +++G P+ + G G+ ++ + Sbjct: 196 KNAGVPTVPGSDGLL--QSTEEAVRVANEIGFPVMITATAGGGGRGMRLAKEPGEFVKLL 253 Query: 209 DL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYI 261 A + +E+ + R IE VL + GE + K + Sbjct: 254 QQAKSEAAAAFGNDGCYLEKFVQNPRHIEFQVLADKFGNVVHFGERD--CSIQRRNQKLL 311 Query: 262 DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG 321 +E A+ E+ + AV A ++G G+ V+ L E+NT Sbjct: 312 EE------PSPALTAELRKAMGDAAVAAAASIGYIGVGTVEFLLDXRGSFYFMEMNTRIQ 365 Query: 322 FTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 + P + + R+ R+ ++ Sbjct: 366 VEH----PVTEMIYSVDLIEEQIRVAMGEKLRYKQEDI 399 >gb|AAA60990.1| (L29638) ligase [Enterococcus casseliflavus] Length = 350 Score = 232 bits (591), Expect = 5e-60 Identities = 123/355 (34%), Positives = 182/355 (50%), Gaps = 9/355 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKS--RFDVVLLGIDK-QGQWHVSDASNYLLN 60 ++ I+FGG S E+ VSL SA + ++A+ S +D+ L+GI W++ + Sbjct: 2 KKIAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIR 61 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 D ++ E Q DV+FPI+HG GEDGS+QG+ Sbjct: 62 QDTWL-----LDTKHKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLF 116 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 + LP+VG V SA CM+K + + G+ AP I LT G Sbjct: 117 ELMKLPYVGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGF 176 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+F KP GSS G++KVT E+ A A+ AF + V++++ I G EI C +LGND+ Sbjct: 177 PVFFKPNEAGSSKGITKVTCVEEIASALKEAFTYCSAVLLQKNIAGVEIGCGILGNDSLT 236 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 C I L F+ ++ KY AK+ VPA + I K++ A Y++LG G+AR Sbjct: 237 VGACDAISLVDGFFDFEEKYQ-LISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLAR 295 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 +D F+T E+ +NEINT+PGFT+ S YP + A GL Y +L+ +L+ LA E Sbjct: 296 IDFFVTERGELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLLVLAKEEVK 350 >ref|NP_387384.1| (NC_003047) PROBABLE PYRUVATE CARBOXYLASE PROTEIN [Sinorhizobium meliloti] emb|CAC47857.1| (AL591793) PROBABLE PYRUVATE CARBOXYLASE PROTEIN [Sinorhizobium meliloti] Length = 1152 Score = 231 bits (590), Expect = 6e-60 Identities = 37/341 (10%), Positives = 98/341 (27%), Gaps = 30/341 (8%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG--- 81 +I + +R ++ + + + + + H + + + P Sbjct: 1 MSISKILVANRSEIAIRVFRAANELGLKTVAIWAEEDKLALHRFKADESYQVGRGPHLPR 60 Query: 82 -----KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASA 136 + + L D I P +G L E + F+G Sbjct: 61 DLGPIMSYLSIDEVIRVAKLSGADAIHPG-YGLLSESPEFAEACAANGITFIGPKPETMR 119 Query: 137 ACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVS 196 +K + L G+ + P + ++G P+ +K + G G+ Sbjct: 120 QLGNKVAARNLAISIGVPVVPATEPLP--DDPEEIKRLAEEIGYPVMLKASWGGGGRGMR 177 Query: 197 KVTSEEQYAIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVL 249 + + V A +V +E+ ++ R +E +LG+ + E Sbjct: 178 AIRDPKDLIREVTEAKREAKAAFGKDEVYLEKLVERARHVESQILGDTHGNVVHLFERD- 236 Query: 250 TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE- 308 + K ++ + ++ +++ + G V+ + + Sbjct: 237 -CSIQRRNQKVVE-----RAPAPYLNDAQRQELADYSLKIARATNYIGAGTVEYLMDSDT 290 Query: 309 NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 + E+N + +G+ +++ Sbjct: 291 GKFYFIEVNPRIQVEHT----VTEVVTGIDIVKAQIHILDG 327 >ref|NP_219627.1| (NC_000117) Biotin Carboxylase [Chlamydia trachomatis] pir||H71553 probable biotin carboxylase - Chlamydia trachomatis (serotype D, strain UW3/Cx) gb|AAC67715.1| (AE001286) Biotin Carboxylase [Chlamydia trachomatis] Length = 457 Score = 231 bits (589), Expect = 8e-60 Identities = 57/341 (16%), Positives = 118/341 (33%), Gaps = 22/341 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKHEH 85 + + +R ++ + I ++ + Y + + H+ L A + + K Sbjct: 1 MKKVLIANRGEIAIRIIRACHDLGLATVAVYSMADQEALHVLLADEAVCIGEAQAAKSYL 60 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 ++ + + VD + P +G L E+ + + L F+G + A DK K Sbjct: 61 KIANILAACEITGVDAVHPG-YGFLSENANFASICESCGLTFIGPSAESIATMGDKVAAK 119 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 +L + + P + + K+G P+ +K G G+ V ++++ Sbjct: 120 QLAKKIKCPVIPGSEGVVKDEVE--GIRIAEKIGFPIVIKAVAGGGGRGIRIVREKDEFY 177 Query: 206 IAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A A + V +E+ I R +E V+G+ + GE Sbjct: 178 RAFTAARAEAEAGFNNPDVYIEKFIENPRHLEVQVIGDKHGNYVYLGERD--CTVQRRRQ 235 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K I+E + PE+ K+ +AV ++ G + V+ L E E+NT Sbjct: 236 KLIEE-----TPSPILTPEMRAKVGKVAVDLARSAGYFSVGTVEFLLDKEKRFYFMEMNT 290 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 + + +G+ + + N Sbjct: 291 RIQVEHT----ITEEVTGIDLLKAQISVAKGEKLPWKQKNI 327 >sp|Q47758|DDL_ENTFA D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) Length = 348 Score = 231 bits (589), Expect = 8e-60 Identities = 136/355 (38%), Positives = 211/355 (59%), Gaps = 10/355 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ +++GG+S EH+VS+ SA ++++AI + V L+ I K GQW + + Sbjct: 1 MKIILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKE 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 H+ + + + ++FP++HG GEDG++QG + Sbjct: 61 VLHLTWAQTPEETGE------FSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETI 114 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN---RHNISFAEVESKLGL 180 N+P+VG+ VLAS MDK +TK LL+ G+ PF+ + R++ F + E L Sbjct: 115 NMPYVGAGVLASVNAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIY 174 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+FVKPAN GSSVG+SKV + E+ A++ AF +D + IVEQGI+ REIE A+LGN++ + Sbjct: 175 PVFVKPANMGSSVGISKVENREELQEALEEAFRYDARAIVEQGIEAREIEVAILGNEDVR 234 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 + GE+V FY YD KYI+ ++ +PA + E+ + + A +AY L +G++R Sbjct: 235 TTLPGEVVKDVAFYDYDAKYINN-TIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSR 293 Query: 301 VDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 D FLT +NE+ +NE+NT+PGFT+ SMYP LW+ GL Y+DLI LI+LAL R Sbjct: 294 CDFFLTSKNELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLALNRFK 348 >pir||T39734 pyruvate carboxylase (EC 6.4.1.1) [similarity] - fission yeast (Schizosaccharomyces pombe) emb|CAB52809.1| (AL109846) pyruvate carboxylase (EC 6.4.1.1) [Schizosaccharomyces pombe] Length = 1185 Score = 231 bits (589), Expect = 8e-60 Identities = 46/358 (12%), Positives = 106/358 (28%), Gaps = 26/358 (7%) Query: 18 EVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA 77 + S + + +R ++ + + + + Y H + + Sbjct: 24 DRSSLLGEKFTKVLVANRSEIAIRVFRTAHELSMHTVAIYSYEDRLSMHRQKADESYPIG 83 Query: 78 QV----PGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVL 133 +V P + + + +++ P +G L E+ + A + FVG Sbjct: 84 KVGQYSPVGAYLAIDEIVSIAKRTGANLVHPG-YGFLSENAEFARKVNEAGMQFVGPSPE 142 Query: 134 ASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSV 193 + DK + + G+ + P H + GLP+ +K A G Sbjct: 143 VIDSLGDKTKARAIAIRCGVPVVPGTPGPV--EHYEEAEAFVKEYGLPVIIKAAMGGGGR 200 Query: 194 GVSKVTSEEQYAIAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGE 246 G+ V S + + + A D V +E+ + + IE ++ + E Sbjct: 201 GMRVVRSADTLKESFERARSEALASFGDGTVFIERFLDKPKHIEIQLMADKAGNVIHLHE 260 Query: 247 IVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT 306 K ++ + + P+I + A++ + + + L Sbjct: 261 RD--CSVQRRHQKVVE-----IAPAKDLDPKIRQALYDDAIKIAKEVKYCNAGTAEFLLD 313 Query: 307 PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL-ALERHAADNALKTT 363 + EIN + + +G+ + L +T Sbjct: 314 QKGRHYFIEINPRIQVEHT----ITEEITGVDIVSAQLHVAAGFTLPEIGLTQDKIST 367 >ref|NP_220281.1| (NC_000117) UDP-N-acetylmuramate-alanine ligase and D-Ala-D-Ala Ligase [Chlamydia trachomatis] sp|O84767|MUDD_CHLTR MURC/DDL BIFUNCTIONAL ENZYME [INCLUDES: UDP-N-ACETYLMURAMATE--ALANINE LIGASE (UDP-N-ACETYLMURAMOYL-L-ALANINE SYNTHETASE); D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE)] pir||A71475 probable muramate-Ala ligase and D-Ala-D-Ala ligase - Chlamydia trachomatis (serotype D, strain UW3/Cx) gb|AAC68357.1| (AE001348) UDP-N-acetylmuramate-alanine ligase and D-Ala-D-Ala Ligase [Chlamydia trachomatis] Length = 803 Score = 231 bits (588), Expect = 1e-59 Identities = 111/369 (30%), Positives = 178/369 (48%), Gaps = 30/369 (8%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 KL +GI+ GGKS EHE+S+ SAKNI + KS +DV I ++G W Sbjct: 447 KLHLGIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITREGLW------------- 493 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + S + + D + Q L VDV+ PI+HG GEDG++QG L Sbjct: 494 ---------ESVSSLETAEDSGKSVFDPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLET 544 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT---RANRHNISFAEVESKLG 179 P+ G + SA M+K TKR + D G+ + P++ LT + A + Sbjct: 545 IGKPYTGPAIAFSAIAMNKVFTKRFMSDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAFS 604 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQ-GIKGREIECAVLGNDN 238 P+FVK ++ GSS+GV +V + + A++ AF D+ V VE+ + +EIE +VLG+ + Sbjct: 605 FPIFVKSSHLGSSIGVFEVHNVIELRDAINEAFMRDNDVFVEENRLGCKEIEVSVLGDGS 664 Query: 239 P--QASTCGEIVLTSDFYAYDTKY--IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLG 294 + E + F Y KY + A++V ++ EI ++I A + Y+ L Sbjct: 665 GAFVVAGLHERRGSGGFIDYQEKYGLSGKSSAQIVFDTDLSKEIQEQILEAADKIYRLLL 724 Query: 295 CAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 G R+D F+ E ++E+N +PG T S + + G Y ++ +L+ L+R Sbjct: 725 GKGSCRIDFFVDEEGNFWLSEMNPIPGMTETSPFLTSFIRKGWSYEQIVHQLVIDGLQRF 784 Query: 355 AADNALKTT 363 L +T Sbjct: 785 NQRQRLIST 793 >gb|AAA67356.1| (U12536) 3-methylcrotonyl-CoA carboxylase precursor [Arabidopsis thaliana] Length = 715 Score = 231 bits (588), Expect = 1e-59 Identities = 52/344 (15%), Positives = 101/344 (29%), Gaps = 44/344 (12%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ--VPGKHE 84 I + +R ++ + + + + Y D H+ A + Sbjct: 38 IEKILVANRGEIACRIMRTAKRLGIQTVAVYSDADRDSLHVKSADEADRIGPPSAKRLSY 97 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + I P +G L E + + L F+G A DK + Sbjct: 98 LSGVTIMEAAARTGAQAIHPG-YGFLSESSDFAQLCEDSGLTFIGPPASAIRDMGDKSAS 156 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 KR++ AG+ + P + K+G P+ +KP + G G+ V S + + Sbjct: 157 KRIMGAAGVPLVPGYHGH--EQDIDHMKSEAEKIGYPIIIKPTHGGGGKGMRIVQSGKDF 214 Query: 205 AIAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A + A + +++E+ I + R IE + G+ + E Sbjct: 215 ADSFLGAQREAAASFGVNTILLEKYITRPRHIEVQIFGDKHGNVLHLYERD--CSVQRRH 272 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEI 316 K I+E A +G V+ + ++ E+ Sbjct: 273 QKIIEEAPA-------------------------AVGYYNAGTVEFIVDTESDQFYFMEM 307 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 NT + P G + R+ + Sbjct: 308 NTRLQVEH----PVTEMIVGQDLVEWQIRVANGEPLPLSQSEVP 347 >ref|NP_505977.1| (NM_073576) pyruvate carboxylase [Caenorhabditis elegans] pir||T20346 pyruvate carboxylase (EC 6.4.1.1) D2023.2 [similarity] - Caenorhabditis elegans emb|CAB02872.1| (Z81052) predicted using Genefinder~Similarity to Human pyruvate carboxylase (TR:G458236), contains similarity to Pfam domain: PF00289 (Carbamoyl-phosphate synthase (CPSase)), Score=572.0, E-value=1.3e-168, N=1; PF00364 (Biotin-requiring enzymes), Scor> gb|AAF60326.1|AF237467_1 (AF237467) pyruvate carboxylase [Caenorhabditis elegans] Length = 1175 Score = 231 bits (588), Expect = 1e-59 Identities = 53/339 (15%), Positives = 109/339 (31%), Gaps = 23/339 (6%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV--PGK 82 + + +R ++ + + + + + Y + H A + + P Sbjct: 30 REFNKVMVANRGEIAIRVFRALTELNKTSVAIYAEQDKNSMHRLKADEAYLVGKGLPPVA 89 Query: 83 HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKD 142 + +D I P +G L E + A + F+G A DK Sbjct: 90 AYLTIDQIIETALKHNIDAIHPG-YGFLSERSDFAAACQNAGIVFIGPSPDVMARMGDKV 148 Query: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEE 202 ++ +AG+ + P E + G P+ +K A G G+ +V E Sbjct: 149 AARQAAIEAGVQVVPGTPGPIT--TADEAVEFAKQYGTPIILKAAYGGGGRGIRRVDKLE 206 Query: 203 QYAIAV------DLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYA 255 + A A D + VE+ ++ R IE +LG+ + E Sbjct: 207 EVEEAFRRSYSEAQAAFGDGSLFVEKFVERPRHIEVQLLGDHHGNIVHLYERD--CSVQR 264 Query: 256 YDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINE 315 K ++ + A+ + +KI A A++ + +G V+ + + E Sbjct: 265 RHQKVVE-----IAPAPALPEGVREKILADALRLARHVGYQNAGTVEFLVDQKGNYYFIE 319 Query: 316 INTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERH 354 +N + + +G+ R+ E Sbjct: 320 VNARLQVEHT----VTEEITGVDLVQAQIRIAEGKSLDD 354 >dbj|BAA11239.1| (D78170) pyruvate carboxylase [Schizosaccharomyces pombe] Length = 1185 Score = 230 bits (587), Expect = 1e-59 Identities = 46/358 (12%), Positives = 106/358 (28%), Gaps = 26/358 (7%) Query: 18 EVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA 77 + S + + +R ++ + + + + Y H + + Sbjct: 24 DRSSLLGEKFTKVLVANRSEIAIRVFRTAHELSMHTVAIYSYEDILSMHRQKADESYPIG 83 Query: 78 QV----PGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVL 133 +V P + + + +++ P +G L E+ + A + FVG Sbjct: 84 KVGQYSPVGAYLAIDEIVSIAKRTGANLVHPG-YGFLSENAEFARKVNEAGMQFVGPSPE 142 Query: 134 ASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSV 193 + DK + + G+ + P H + GLP+ +K A G Sbjct: 143 VIDSLGDKTKARAIAIRCGVPVVPGTPGPV--EHYEEAEAFVKEYGLPVIIKAAMGGGGR 200 Query: 194 GVSKVTSEEQYAIAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGE 246 G+ V S + + + A D V +E+ + + IE ++ + E Sbjct: 201 GMRVVRSADTLKESFERARSEALASFGDGTVFIERFLDKPKHIEIQLMADKAGNVIHLHE 260 Query: 247 IVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT 306 K ++ + + P+I + A++ + + + L Sbjct: 261 RD--CSVQRRHQKVVE-----IAPAKDLDPKIRQALYDDAIKIAKEVKYCNAGTAEFLLD 313 Query: 307 PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL-ALERHAADNALKTT 363 + EIN + + +G+ + L +T Sbjct: 314 QKGRHYFIEINPRIQVEHT----ITEEITGVDIVSAQLHVAAGFTLPEIGLTQDKIST 367 >ref|NP_518386.1| (NC_003295) PROBABLE ACYL-COA CARBOXYLASE ALPHA CHAIN PROTEIN [Ralstonia solanacearum] emb|CAD13793.1| (AL646058) PROBABLE ACYL-COA CARBOXYLASE ALPHA CHAIN PROTEIN [Ralstonia solanacearum] Length = 712 Score = 230 bits (587), Expect = 1e-59 Identities = 60/340 (17%), Positives = 107/340 (30%), Gaps = 22/340 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA-QVPGKHE 84 + +R ++ + + + Y D H+A A + Sbjct: 38 MFTKLLIANRGEIACRVAATCRRLGIRTVAVYSDADVDARHVAACDEAIHIGEPAARDSY 97 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + I P +G L E+ + A L FVG A A K Sbjct: 98 LRADRILEAARATGAQAIHPG-YGFLSENEAFARACSEAGLVFVGPPASAIEAMGSKSAA 156 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K L+ AG+ + P + ++G P+ +K + G G+ V + E + Sbjct: 157 KALMETAGVPLVPGYHGDNQDAA--FLRAQADRIGYPVLIKASAGGGGKGMRVVETGEAF 214 Query: 205 AIAVDLAF------EFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A+ D +V++E+ + + R IE V + A E Sbjct: 215 AAALASVKREASSSFGDDRVLIEKYLTRPRHIEIQVFADGFGDAVYLFERD--CSVQRRH 272 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E + PE + AV A + +G G V+ + + E+N Sbjct: 273 QKVLEE-----APAPGMTPERRRAMGEAAVAAARAVGYVGAGTVEFIVDEDGTFYFMEMN 327 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 T + P +G + R+ A D Sbjct: 328 TRLQVEH----PVTEMITGEDLVEWQLRVACGEPLPRAQD 363 >ref|NP_217017.1| (NC_000962) accA1 [Mycobacterium tuberculosis H37Rv] ref|NP_337066.1| (NC_002755) acetyl/propionyl-CoA carboxylase, alpha subunit [Mycobacterium tuberculosis CDC1551] sp|P46401|BCCA_MYCTU ACETYL-/PROPIONYL-COENZYME A CARBOXYLASE ALPHA CHAIN [INCLUDES: BIOTIN CARBOXYLASE ; BIOTIN CARBOXYL CARRIER PROTEIN (BCCP)] pir||B55579 biotin carboxyl carrier protein - Mycobacterium tuberculosis emb|CAA79609.1| (Z19549) biotin carboxyl carrier protein [Mycobacterium tuberculosis] emb|CAB08919.1| (Z95556) accA1 [Mycobacterium tuberculosis H37Rv] gb|AAK46880.1| (AE007094) acetyl/propionyl-CoA carboxylase, alpha subunit [Mycobacterium tuberculosis CDC1551] Length = 654 Score = 230 bits (587), Expect = 1e-59 Identities = 58/344 (16%), Positives = 116/344 (32%), Gaps = 24/344 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 + +R ++ + I + + + Y D H+ +A L P + Sbjct: 1 MFDTVLVANRGEIAVRVIRTLRRLGIRSVAVYSDPDVDARHVLEADAAVRLGPAPARESY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + I P +G L E+ A + F+G A DK Sbjct: 61 LDIGKVLDAAARTGAQAIHPG-YGFLAENADFAAACERARVVFLGPPARAIEVMGDKIAA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K + + + P + RA + + +++G P+ +KP+ G G+ V + Sbjct: 120 KNAVAAFDVPVVPG--VARAGLTDDALVTAAAEVGYPVLIKPSAGGGGKGMRLVQDPARL 177 Query: 205 AIAVDLAF------EFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A+ A D + +E+ + + R IE VL + + GE Sbjct: 178 PEALVSARREAMSSFGDDTLFLERFVLRPRHIEVQVLADAHGNVVHLGER--ECSLQRRH 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE--NEVVINE 315 K I+E + P+ ++I A + + G V+ ++ + +E E Sbjct: 236 QKVIEE-----APSPLLDPQTRERIGVAACNTARCVDYVGAGTVEFIVSAQRPDEFFFME 290 Query: 316 INTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 +NT + P +GL + R+ A ++ Sbjct: 291 MNTRLQVEH----PVTEAITGLDLVEWQLRVGAGEKLGFAQNDI 330 >gb|AAG37836.1|AF295372_1 (AF295372) pyruvate carboxylase [Danio rerio] Length = 1180 Score = 230 bits (587), Expect = 1e-59 Identities = 51/332 (15%), Positives = 99/332 (29%), Gaps = 23/332 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV--PGKHE 84 I + +R ++ + + + + Y H A + + P Sbjct: 39 IKKVMVANRGEIAIRVFRACTELGIRTVAVYSEQDTGQMHRQKADEAYLIGRGLSPVAAY 98 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D VD I P +G L E A + F+G DK Sbjct: 99 LHIPDIIKVAKENNVDAIHPG-YGFLSERADFAQACAEAGVRFIGPSPEVVRKMGDKVEA 157 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + L AG+ + P + E P+ K A G G+ V + E+ Sbjct: 158 RALAIKAGVPVVPGTDAPISC--LQEAQEFAKTYDFPIIFKAAYGGGGRGMRVVRNYEEL 215 Query: 205 AIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A + + VE+ I+ R IE +LG+ E Sbjct: 216 EENYQRAYSEALAAFGNGALFVEKFIEKPRHIEVQILGDKYGNVIHLYERD--CSIQRRH 273 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ + A + + D++ +V + +G V+ + + E+N Sbjct: 274 QKVVE-----IAPAAHLDSHLRDRLTLDSVNLAKQVGYENAGTVEFLVDKHGKHYFIEVN 328 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 + + + + + R+ E Sbjct: 329 SRLQVEHT----VTEEITDVDLVHAQLRVCEG 356 >ref|NP_243653.1| (NC_002570) acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus halodurans] dbj|BAB06506.1| (AP001516) acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus halodurans] Length = 452 Score = 230 bits (587), Expect = 1e-59 Identities = 59/342 (17%), Positives = 116/342 (33%), Gaps = 23/342 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 I + +R ++ + I + + + + D H+ + A + P K Sbjct: 1 MIKKLLVANRGEIAVRIIRACRELGIETVAVFSEADRDALHVRMADEAYCIGPTPSAKSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + L VD I P +G L E+ + N+ FVG A + KDV Sbjct: 61 LNFTNIMSVATLTEVDAIHPG-YGFLAENADFAEICGECNITFVGPSADAISKMGTKDVA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + ++ AG+ I P V ++G P+ +K G G+ +EE+ Sbjct: 120 RETMKRAGVPIVPGSEGII--ESVEDGLAVAEQIGYPVIIKATAGGGGKGIRVARNEEEL 177 Query: 205 AIAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + + V +E+ I R +E VL +++ GE Sbjct: 178 RKGINITQQEAATAFGNPGVYLEKYIEDFRHVEIQVLADNHGHVIHLGERD--CSIQRRL 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEI 316 K ++E AI + ++ AV A + + +G V+ + E+ Sbjct: 236 QKLLEE-----TPSPAITEKKRKEMGEAAVAAAKAVNYSGAGTVEFIYDHNNGDFYFMEM 290 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 NT + P +G+ ++ + ++ Sbjct: 291 NTRIQVEH----PVTEMVTGIDLIKEQIKVASGKPLSYKQED 328 >ref|NP_533976.1| (NC_003305) 3-methylcrotonyl-CoA carboxylase alpha subunit [Agrobacterium tumefaciens str. C58 (U. Washington)] gb|AAL44292.1| (AE009278) 3-methylcrotonyl-CoA carboxylase alpha subunit [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 663 Score = 230 bits (586), Expect = 2e-59 Identities = 58/336 (17%), Positives = 110/336 (32%), Gaps = 23/336 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HE 84 + +R ++ I + + Y D H+AL A ++ P + Sbjct: 1 MFSKILIANRGEIACRIIRTAASMGIRTVAVYSDADRDAMHVALADEAIAIGPAPARASY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + I P +G L E+ A L F+G A A K Sbjct: 61 LDGEKIIAAAKASGAEAIHPG-YGFLSENAGFAEACASAGLVFIGPPPEAIRAMGGKSEA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K L+ AG+ I P + A K+G P+ +K + G G+ V + + Sbjct: 120 KALMATAGVPIVPGYHGD--EQAEKRLASEADKIGYPVLLKASAGGGGKGMRVVRQKHDF 177 Query: 205 AIAV------DLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A + LA + ++++E+ ++ R +E V + + + E Sbjct: 178 AAELAGAKREALAAFGNDRMLIEKYLERPRHVEVQVFADGHGNCVSLFERD--CSIQRRH 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E + ++ ++ A A + + G ++ L P E+N Sbjct: 236 QKVIEE-----APAPGLPDDLRQRMYDAATAAARAIDYRGAGTIEFLLDPSG-FYFMEMN 289 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 T + P +GL + R+ Sbjct: 290 TRLQVEH----PVTEYITGLDLVEWQLRVANGEALP 321 >ref|NP_103309.1| (NC_002678) D-alanine-D-alanine ligase A [Mesorhizobium loti] dbj|BAB49095.1| (AP002998) D-alanine-D-alanine ligase A [Mesorhizobium loti] Length = 357 Score = 230 bits (586), Expect = 2e-59 Identities = 159/360 (44%), Positives = 227/360 (62%), Gaps = 9/360 (2%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 EK RV I++GG+SAEH+VS SA N++ AID++R++VV + I + G+W + + Sbjct: 3 EKTRVAILYGGRSAEHDVSRLSAANVLKAIDRTRYEVVPIAISRDGRWRLQPS---SEAG 59 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 D A + +A +PG + +NG+ VDV+FP++HG GEDGS+QG Sbjct: 60 ADGAGAQVPEDGVEVALLPGGKGRLVALTKNGEQPDPVDVVFPVLHGPFGEDGSVQGYAE 119 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLP 181 VA++ +VG +LASAA MDKDV KRLLR+AGL +A +T+ + + SF E+ LGLP Sbjct: 120 VADVAYVGCGILASAAAMDKDVAKRLLREAGLAVARSVTVLKGD--VGSFQEIAGALGLP 177 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL--GNDNP 239 F KPA QGSS GVSKV + + AV+ A +D K ++E+ + GREIEC+VL + + Sbjct: 178 FFAKPARQGSSFGVSKVHDRDGFEQAVETALRYDSKALIEEFVDGREIECSVLERADGSL 237 Query: 240 QASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAG 297 S GEI+ FY Y+ KY D +GA V VPA + ++ + +A +A++ LGC Sbjct: 238 TVSPPGEIIPADKHGFYTYEAKYFDAEGAVVKVPADVPADVVARTSEMAARAFRALGCEA 297 Query: 298 MARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 MARVD FL + +++NE+NTLPGFT+ISMY K A+G+GY+ +I LIE AL RH A Sbjct: 298 MARVDFFLRADGSLLVNEVNTLPGFTDISMYAKALAAAGIGYSKVIDVLIEHALARHRAR 357 >gb|AAD34740.1| (AF132152) unknown [Drosophila melanogaster] gb|AAF58885.1| (AE003831) BcDNA:GH06348 gene product [alt 2] [Drosophila melanogaster] gb|AAF58886.1| (AE003831) BcDNA:GH06348 gene product [alt 3] [Drosophila melanogaster] gb|AAF58887.1| (AE003831) BcDNA:GH06348 gene product [alt 4] [Drosophila melanogaster] Length = 1181 Score = 230 bits (586), Expect = 2e-59 Identities = 54/333 (16%), Positives = 100/333 (29%), Gaps = 23/333 (6%) Query: 30 AIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV--PGKHEHQL 87 + +R ++ + + + + Y H + + + P + + Sbjct: 42 VLVANRGEIAIRVFRACTELGIKSVAVYSEQDKMHMHRQKADESYIVGKGLPPVEAYLNI 101 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + VD + P +G L E + A L F+G DK + Sbjct: 102 PELIRVCKENDVDAVHPG-YGFLSERSDFAQAVIDAGLRFIGPSPEVVQKMGDKVAARVA 160 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 +AG+ I P E K GLP+ K A G G+ V E + Sbjct: 161 AIEAGVPIVPGTDGPVT--TKEEALEFCKKHGLPVIFKAAYGGGGRGMRVVRKMEDVEES 218 Query: 208 VDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A + + +E+ I+ R IE +LG+ E K Sbjct: 219 FQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERD--CSVQRRHQKV 276 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++ + + EI DK+ AV+ + +G V+ E+N Sbjct: 277 VE-----IAPAPRLPIEIRDKMTEAAVRLARHVGYENAGTVEFLCDESGNFYFIEVNARL 331 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELALER 353 + + +G+ R+ E Sbjct: 332 QVEHT----VTEEITGIDLVQSQIRVAEGMTLP 360 >ref|NP_470397.1| (NC_003212) highly similar to pyruvate carboxylase [Listeria innocua] emb|CAC96291.1| (AL596167) highly similar to pyruvate carboxylase [Listeria innocua] Length = 1146 Score = 230 bits (586), Expect = 2e-59 Identities = 55/344 (15%), Positives = 103/344 (28%), Gaps = 24/344 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATS--LAQVPGKHE 84 I + +R ++ + + + + + Y H A + P Sbjct: 4 IKKVLVANRGEIAIRVMRACTELKIKTVAIYSQEDTGSFHRYKSDEAYLVGAGKKPIDAY 63 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + D I P +G L E+ + FVG DK Sbjct: 64 LDIENIIEIAKESGADAIHPG-YGFLSENIEFARRCEQEGIIFVGPKSKHLDMFGDKIKA 122 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K A + + P A E K G PL +K + G G+ V S+E Sbjct: 123 KEQALLADIPVIPGSDGPVAG--IKEVEEFGEKNGYPLMIKASLGGGGRGMRVVESKEHV 180 Query: 205 AIAVDL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + + A + +V VE+ + + IE +LG+ + E Sbjct: 181 KESFERASSEAKAAFGNDEVYVEKCVMNPKHIEVQILGDTHGNIVHLFERD--CSIQRRH 238 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ V AI E+ ++I AV+ + + V+ + +N E+N Sbjct: 239 QKVVE-----VAPCNAITSELRNRICDAAVKLMKNVDYINAGTVEFLVEGDN-FYFIEVN 292 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALK 361 + +G+ + + K Sbjct: 293 PRVQVEHT----ITEMITGIDIVQSQLFIADGYALHDQLVAIPK 332 >ref|NP_539184.1| (NC_003317) PYRUVATE CARBOXYLASE [Brucella melitensis] gb|AAL51448.1| (AE009469) PYRUVATE CARBOXYLASE [Brucella melitensis] Length = 1158 Score = 229 bits (585), Expect = 2e-59 Identities = 42/339 (12%), Positives = 102/339 (29%), Gaps = 30/339 (8%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG----- 81 I + +R ++ + + + + + H + + + P Sbjct: 8 ISKILVANRSEIAIRVFRAANELGLKTVTIWAEEDKLSLHRFKADESYQVGRGPHLDRDL 67 Query: 82 ---KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAAC 138 + + + L D I P +G L E + F+G Sbjct: 68 GPIESYLSIDEIIRVAKLSGADAIHPG-YGLLSESPEFAEACAENGIVFIGPKPETMRRL 126 Query: 139 MDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKV 198 +K + L + G+ + P ++ +++G PL +K + G G+ + Sbjct: 127 GNKVAARNLAIEIGVPVVPATDPLP--DDMDEVKKLAAQIGYPLMLKASWGGGGRGMRAI 184 Query: 199 TSEEQYAIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTS 251 +E A V A +V +E+ ++ R +E +LG+ A E Sbjct: 185 RAEADLAREVMEAKREAKAAFGKDEVYLEKLVERARHVEVQILGDTYGNAVHLFERD--C 242 Query: 252 DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE-NE 310 + K ++ + ++ ++ G V+ + + + Sbjct: 243 SIQRRNQKVVE-----RAPAPYLNDAQRRELADYGLKIAHATDYIGAGTVEFLMDADTGK 297 Query: 311 VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 E+N + + +G+ ++E Sbjct: 298 FYFIEVNPRIQVEHT----VTEEVTGIDIVKAQIHILEG 332 >pir||T43735 pyruvate carboxylase (EC 6.4.1.1) [validated] - yellow fever mosquito gb|AAB64306.1| (L36530) pyruvate carboxylase [Aedes aegypti] Length = 1195 Score = 229 bits (585), Expect = 2e-59 Identities = 53/342 (15%), Positives = 104/342 (29%), Gaps = 26/342 (7%) Query: 30 AIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ--VPGKHEHQL 87 + +R ++ + + + + Y H + + + P + + Sbjct: 41 VLVANRGEIAIRVFRACNELGIRSVAVYSEQDKMHMHRQKADESYMVGKGLAPVEAYLSI 100 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + VD + P +G L E + A L F+G DK ++ Sbjct: 101 PEIIRVCKENDVDAVHPG-YGFLSERSDFAQAVIDAGLRFIGPSPKVVQQMGDKVAARKA 159 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 +AG+ I P + K GLP+ K A G G+ V E+ Sbjct: 160 AIEAGVPIVPGTDGPVT--TKEEALDFCKKHGLPVIFKAAYGGGGRGMRVVRKMEEVEDN 217 Query: 208 VDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A + + +E+ I+ R IE +LG+ E K Sbjct: 218 FQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERD--CSVQRRHQKV 275 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++ + + E+ DK+ AV+ + +G V+ E+N Sbjct: 276 VE-----IAPAPRLPREVRDKMTEYAVKLAKHVGYENAGTVEFLCDESGNFYFIEVNARL 330 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELALER---HAADNA 359 + + +G+ R+ E + +N Sbjct: 331 QVEHT----VTEEITGIDLVQSQIRVAEGMTLPELGYNQENI 368 >gb|AAC44388.1| (U51439) pyruvate carboxylase [Rhizobium etli] Length = 1154 Score = 229 bits (585), Expect = 3e-59 Identities = 44/340 (12%), Positives = 105/340 (29%), Gaps = 30/340 (8%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG----- 81 I + +R ++ + + + + + H + + + P Sbjct: 3 ISKILVANRSEIAIRVFRAANELGIKTVAIWAEEDKLALHRFKADESYQVGRGPHLARDL 62 Query: 82 ---KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAAC 138 + + + L D I P +G L E A + F+G Sbjct: 63 GPIESYLSIDEVIRVAKLSGADAIHPG-YGLLSESPEFVDACNKAGIIFIGPKADTMRQL 121 Query: 139 MDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKV 198 +K + L G+ + P A++ + +G P+ +K + G G+ + Sbjct: 122 GNKVAARNLAISVGVPVVPATEPLP--DDMAEVAKMAAAIGYPVMLKASWGGGGRGMRVI 179 Query: 199 TSEEQYAIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTS 251 SE A V A +V +E+ ++ R +E +LG+ + E Sbjct: 180 RSEADLAKEVTEAKREAMAAFGKDEVYLEKLVERARHVESQILGDTHGNVVHLFERD--C 237 Query: 252 DFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE-NE 310 + K ++ ++ ++ A +++ G V+ + + + Sbjct: 238 SVQRRNQKVVE-----RAPAPYLSEAQRQELAAYSLKIAGATNYIGAGTVEYLMDADTGK 292 Query: 311 VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 E+N + +G+ +++ A Sbjct: 293 FYFIEVNPRIQVEHT----VTEVVTGIDIVKAQIHILDGA 328 >ref|NP_501777.1| (NM_069376) carbomoyl-phosphate carboxylase [Caenorhabditis elegans] pir||T21641 hypothetical protein F32B6.2 - Caenorhabditis elegans emb|CAB03038.1| (Z81074) Similarity to Soybean 3-methylcrotonyl-CoA carboxylase (TR:Q42777), contains similarity to Pfam domain: PF00289 (Carbamoyl-phosphate synthase (CPSase)), Score=534.3, E-value=2.8e-157, N=2; PF00364 (Biotin-requiring enzymes), Score=54.1, E-valu> Length = 688 Score = 229 bits (585), Expect = 3e-59 Identities = 51/361 (14%), Positives = 118/361 (32%), Gaps = 39/361 (10%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA-QVPGKH 83 + I + +R ++ + + + + + + + + A + + + Sbjct: 17 RPIQRVLVANRGEIAIRVQNTARKMGIETVAVFSDADRNSLFVKKADKAYHIGPPLAAES 76 Query: 84 EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + N I P +G L E+ A L F+G A K+V Sbjct: 77 YLNMDKIINSALRSGAQAIHPG-YGFLSENAGFAEKCAQAGLVFIGPPAQAIRDMGAKNV 135 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 +K+++ DA + + ++ + + + +++G P+ +K G G+ +E + Sbjct: 136 SKQIMEDAKVPVVKG--FHGEDQSDANLKKKSAEIGYPVMLKAVYGGGGKGMRIAWNEAE 193 Query: 204 YAIAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 + + A + +++VE+ ++ R +E V G+ + E Sbjct: 194 FEEKLASARNEAKKSFGNDEMLVEKFVEKPRHVEVQVFGDHHGNYVHLWERD--CSVQRR 251 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEI 316 K I+E + + K+ AV+A +G G V+ + P E E+ Sbjct: 252 HQKIIEE-----APAPNMEHDTRVKLGESAVRAAAAVGYVGAGTVEFIMDPRGEFYFMEM 306 Query: 317 NTLPGFTNISMYPKLWQASGL-----------------GYTDLITRLIELALERHAADNA 359 NT + P +G+ + R+ + Sbjct: 307 NTRLQVEH----PVSEAITGIDFIMGDWKLSNNLISGTDLVEWQLRVAQGEKLPLKQSEI 362 Query: 360 L 360 Sbjct: 363 P 363 >ref|NP_214048.1| (NC_000918) pyruvate carboxylase n-terminal domain [Aquifex aeolicus] pir||A70432 biotin carboxylase (EC 6.3.4.14) [similarity] - Aquifex aeolicus gb|AAC07446.1| (AE000744) pyruvate carboxylase n-terminal domain [Aquifex aeolicus] Length = 472 Score = 229 bits (585), Expect = 3e-59 Identities = 53/340 (15%), Positives = 109/340 (31%), Gaps = 21/340 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 + +R ++ + I + + + Y H+ L A + P Sbjct: 1 MFNKVLVANRGEIAVRIIRACKELGIPTVAIYNEVESTARHVKLADEAYMIGTDPLDTYL 60 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 N D I P +G L E+ M A + F+G DK +K Sbjct: 61 NKQRIINLALEVGADAIHPG-YGFLAENAEFAKMCEEAGITFIGPHWKVIELMGDKARSK 119 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 +++ AG+ + P + ++G P+ +K G G+ +EE+ Sbjct: 120 EVMKKAGVPVVPGSDGVLK--SLEEAKALAREIGYPVLLKATAGGGGRGIRICRNEEELV 177 Query: 206 IAVDLA------FEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 + A +++E+ I + IE VLG+ + GE + Sbjct: 178 KNYEQASREAEKAFGRGDLLLEKFIENPKHIEYQVLGDKHGNVIHLGERD--CSIQRRNQ 235 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K ++ + + PE + I +A + +G ++ E + E+NT Sbjct: 236 KLVE-----IAPSLILTPEKREYYGNIVTKAAKEIGYYNAGTMEFIADQEGNLYFIEMNT 290 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 + P +G+ ++ ++ Sbjct: 291 RIQVEH----PVSEMVTGIDIVKWQIKIAAGEPLTIKQED 326 >gb|AAG22289.1| (AE003831) BcDNA:GH06348 gene product [alt 1] [Drosophila melanogaster] Length = 1196 Score = 229 bits (584), Expect = 3e-59 Identities = 54/333 (16%), Positives = 100/333 (29%), Gaps = 23/333 (6%) Query: 30 AIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV--PGKHEHQL 87 + +R ++ + + + + Y H + + + P + + Sbjct: 42 VLVANRGEIAIRVFRACTELGIKSVAVYSEQDKMHMHRQKADESYIVGKGLPPVEAYLNI 101 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + VD + P +G L E + A L F+G DK + Sbjct: 102 PELIRVCKENDVDAVHPG-YGFLSERSDFAQAVIDAGLRFIGPSPEVVQKMGDKVAARVA 160 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 +AG+ I P E K GLP+ K A G G+ V E + Sbjct: 161 AIEAGVPIVPGTDGPVT--TKEEALEFCKKHGLPVIFKAAYGGGGRGMRVVRKMEDVEES 218 Query: 208 VDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A + + +E+ I+ R IE +LG+ E K Sbjct: 219 FQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERD--CSVQRRHQKV 276 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++ + + EI DK+ AV+ + +G V+ E+N Sbjct: 277 VE-----IAPAPRLPIEIRDKMTEAAVRLARHVGYENAGTVEFLCDESGNFYFIEVNARL 331 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELALER 353 + + +G+ R+ E Sbjct: 332 QVEHT----VTEEITGIDLVQSQIRVAEGMTLP 360 >ref|NP_464597.1| (NC_003210) highly similar to pyruvate carboxylase [Listeria monocytogenes EGD-e] emb|CAC99150.1| (AL591977) highly similar to pyruvate carboxylase [Listeria monocytogenes] Length = 1146 Score = 229 bits (584), Expect = 3e-59 Identities = 53/344 (15%), Positives = 102/344 (29%), Gaps = 24/344 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATS--LAQVPGKHE 84 I + +R ++ + + + + + Y H A + P Sbjct: 4 IKKVLVANRGEIAIRVMRACTELKIKTVAIYSQEDTGSFHRYKSDEAYLVGAGKKPIDAY 63 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + D I P +G L E+ + FVG DK Sbjct: 64 LDIENIIEIAKESGADAIHPG-YGFLSENIEFARRCEQEGIIFVGPKSKHLDMFGDKIKA 122 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K A + + P E K G PL +K + G G+ V S+E Sbjct: 123 KEQALLADIPVIPGS--NGPVAGIKEVEEFGEKNGYPLMIKASLGGGGRGMRVVESKEHV 180 Query: 205 AIAVDL------AFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + + A + +V VE+ + + IE +LG+ + E Sbjct: 181 KESFERASSEAKAAFGNDEVYVEKCVMNPKHIEVQILGDTHGNIVHLFERD--CSIQRRH 238 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ V AI E+ ++I AV+ + + V+ + ++ E+N Sbjct: 239 QKVVE-----VAPCNAITSELRNRICDAAVKLMKNVDYINAGTVEFLVEGDD-FYFIEVN 292 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALK 361 + +G+ + + K Sbjct: 293 PRVQVEHT----ITEMITGIDIVQSQLFIADGYALHDQLVAIPK 332 >gb|AAC43218.1| (U00457) D-alanine:D-alanine ligase-related protein [Enterococcus faecalis] prf||2007289B D-Ala D-Ala ligase [Enterococcus faecalis] Length = 348 Score = 229 bits (584), Expect = 4e-59 Identities = 136/354 (38%), Positives = 210/354 (58%), Gaps = 10/354 (2%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 ++ +++GG+S EH+VS+ SA ++++AI + V L+ I K GQW + + Sbjct: 2 KIILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEV 61 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 H+ + + + ++FP++HG GEDG++QG + N Sbjct: 62 LHLTWAQTPEETGE------FSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETIN 115 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRAN---RHNISFAEVESKLGLP 181 +P+VG+ VLAS MDK +TK LL+ G+ PF+ + R++ F + E L P Sbjct: 116 MPYVGAGVLASVNAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYP 175 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 +FVKPAN GSSVG+SKV + E+ A++ AF +D + IVEQGI+ REIE A+LGN++ + Sbjct: 176 VFVKPANMGSSVGISKVENREELQEALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRT 235 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 + GE+V FY YD KYI+ ++ +PA + E+ + + A +AY L +G++R Sbjct: 236 TLPGEVVKDVAFYDYDAKYINN-TIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRC 294 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 D FLT +NE+ +NE+NT+PGFT+ SMYP LW+ GL Y+DLI LI+LAL R Sbjct: 295 DFFLTSKNELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLALNRFK 348 >gb|AAD19835.1| (AF060799) D-alanyl-D-alanine ligase [Amycolatopsis orientalis] Length = 348 Score = 229 bits (584), Expect = 4e-59 Identities = 122/355 (34%), Positives = 197/355 (55%), Gaps = 18/355 (5%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 M +L++GI+FGG S EH +S++SA+ + +D +++ +GI + G W + D Sbjct: 1 MGRLKIGILFGGLSEEHPISIKSAREVQKHLDLEKYEPYYIGITQSGSWMLCDGPAEDWE 60 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120 D L P + +DV+ P++HG GEDG++QG+L Sbjct: 61 NGDVRPAVLSPDRGVHGLLVLDEGK--------YETIALDVVLPVLHGKFGEDGAMQGLL 112 Query: 121 RVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL 180 ++ +P+VG D+ +S C+DK +T ++R AG+ F +T N + L Sbjct: 113 EISGIPYVGCDLPSSVMCIDKSLTYSVVRGAGIATPTFHIVTPDNDVDPDA------LNY 166 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGND-NP 239 P+FVKPA GSS GVSKV+S+E+ A+ A ++D K+++E+ + G EI C++LG+ + Sbjct: 167 PVFVKPARSGSSFGVSKVSSKEELPAALAEARQYDAKILIEEAVIGSEIGCSILGDGEDL 226 Query: 240 QASTCGEIVLTSDFYAYDTKYIDEDGAKV---VVPAAIAPEINDKIRAIAVQAYQTLGCA 296 A + LT F+ + E G++ +VPA I D ++ A Y+ LGC+ Sbjct: 227 FAGEVDRVALTHGFFKIHQEKSPETGSENSSFIVPADIPDASRDLVQETAKVIYRALGCS 286 Query: 297 GMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 G+ARVD+FL + VV+NE+NTLPG T+ S YP++ A+GL D+I RL++L L Sbjct: 287 GLARVDLFLKEDGSVVLNEVNTLPGLTSYSRYPRMMNAAGLSLGDVIDRLVKLTL 341 >ref|NP_009767.1| (NC_001134) Urea amidolyase (contains urea carboxylase and allophanate hydrolase); Dur1,2p [Saccharomyces cerevisiae] sp|P32528|DUR1_YEAST UREA AMIDOLYASE [INCLUDES: UREA CARBOXYLASE ; ALLOPHANATE HYDROLASE ] pir||S46082 urea carboxylase (EC 6.3.4.6) - yeast (Saccharomyces cerevisiae) emb|CAA85172.1| (Z36077) ORF YBR208c [Saccharomyces cerevisiae] Length = 1835 Score = 229 bits (583), Expect = 4e-59 Identities = 57/338 (16%), Positives = 106/338 (30%), Gaps = 24/338 (7%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKH-EH 85 + +R ++ + I + + + Y H+ + L Sbjct: 633 FDTVLIANRGEIAVRIIKTLKKLGIRSVAVYSDPDKYSQHVTDADVSVPLHGTTAAQTYL 692 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + + I P +G L E+ A + FVG K + Sbjct: 693 DMNKIIDAAKQTNAQAIIPG-YGFLSENADFSDACTSAGITFVGPSGDIIRGLGLKHSAR 751 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 ++ + AG+ + P L +V ++L P+ VK G +G+ KV SEE Sbjct: 752 QIAQKAGVPLVPGSLLIT---SVEEAKKVAAELEYPVMVKSTAGGGGIGLQKVDSEEDIE 808 Query: 206 IAVD------LAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 + F D V +E+ I R +E ++G+ +A GE + Sbjct: 809 HIFETVKHQGETFFGDAGVFLERFIENARHVEVQLMGDGFGKAIALGERD--CSLQRRNQ 866 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEIN 317 K I+E + + +R A L V+ ++E E+N Sbjct: 867 KVIEE-----TPAPNLPEKTRLALRKAAESLGSLLNYKCAGTVEFIYDEKKDEFYFLEVN 921 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 T + P +GL + + R+ Sbjct: 922 TRLQVEH----PITEMVTGLDLVEWMIRIAANDAPDFD 955 >ref|NP_509293.1| (NM_076892) Propionyl-coA carboxylase alpha chain precursor [Caenorhabditis elegans] pir||T16187 hypothetical protein F27D9.5 - Caenorhabditis elegans gb|AAA93384.1| (U49829) Hypothetical protein F27D9.5 [Caenorhabditis elegans] Length = 724 Score = 228 bits (582), Expect = 6e-59 Identities = 57/342 (16%), Positives = 115/342 (32%), Gaps = 22/342 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKHEH 85 + +R ++ I + + + + H+ + A + + P K Sbjct: 49 FDKILIANRGEIACRVIKTARAMGIKTVAVHSDVDSNSLHVKMADEAVCVGEAPTAKSYL 108 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + + P +G L E+ L A F+G + A DK +K Sbjct: 109 RADRILQAVEDTGAQAVHPG-YGFLSENTKFAAELEKAGAKFIGPNSKAILDMGDKIHSK 167 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 ++ A +++ P A+ +V +G P+ +K + G G+ +++Q Sbjct: 168 KIATAARVSMIPGYDGEIADE--DMCVKVSRDIGYPVMIKASAGGGGKGMRVAWNDKQAR 225 Query: 206 IAV----DLAF--EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A D +++VE+ I R IE VL + + A E + Sbjct: 226 EGYRLSKQEAASSFGDDRMLVEKFIDNPRHIEMQVLCDKHGNALWLNER--ECSIQRRNQ 283 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K I+E + + PE+ K+ AVQ + +G V+ + + E+NT Sbjct: 284 KVIEE-----APSSFVPPEMRRKMGEQAVQLAKAVGYDSAGTVEFLVDSQRNFYFLEMNT 338 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + P +G+ + R+ + Sbjct: 339 RLQVEH----PITECITGIDIVQQMLRVSYGHPLPITQEQVP 376 >ref|NP_246028.1| (NC_002663) AccC [Pasteurella multocida] gb|AAK03175.1| (AE006150) AccC [Pasteurella multocida] Length = 448 Score = 228 bits (581), Expect = 6e-59 Identities = 52/341 (15%), Positives = 105/341 (30%), Gaps = 22/341 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 + + +R ++ L + + + + + + H+ L + P K Sbjct: 1 MLEKVVIANRGEIALRILRACKELGIKTVAVHSTADRELKHVLLADETVCIGPAPSTKSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + D I P +G L E+ + + F+G DK Sbjct: 61 LNIPAIIAAAEVTGADAIHPG-YGFLSENADFAEQVERSGFIFIGPTADVIRLMGDKVSA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 ++ +G+ P + + E+ ++G P+ +K + G G+ V E Sbjct: 120 IEAMKKSGVPCVPGSDGPVGSDMVKN-KEIAKRIGYPVIIKASGGGGGRGMRVVRDEASL 178 Query: 205 AI------AVDLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A + V +E+ + R IE VL + + A E Sbjct: 179 EESIAMTKAEAKAAFNNDMVYMEKYLENPRHIEIQVLADTHGNAIYLAERD--CSMQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E I+ E+ I +A +G G + E E+N Sbjct: 237 QKVVEE-----APAPGISDEVRRDIGERCAKACVEIGYRGAGTFEFLY-ENGEFYFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 T + P +G+ R+ ++ Sbjct: 291 TRIQVEH----PVTEMITGVDLVKEQLRIAAGLPISIKQED 327 >ref|NP_407114.1| (NC_003143) biotin carboxylase [Yersinia pestis] emb|CAC93128.1| (AJ414158) biotin carboxylase [Yersinia pestis] Length = 449 Score = 228 bits (581), Expect = 6e-59 Identities = 48/341 (14%), Positives = 101/341 (29%), Gaps = 22/341 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HE 84 + + +R ++ L + + + + + + D H+ L + P Sbjct: 1 MLDKIVIANRGEIALRILRACKELGIKTVAVHSVADRDLKHVLLADETVCIGPAPSVKSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + + P +G L E+ + + F+G DK Sbjct: 61 LNIPAIISAAEITGAVAVHPG-YGFLSENADFAEQVERSGFIFIGPRAETIRLMGDKVSA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 ++ AG+ P ++ + ++G P+ +K + G G+ V ++ Sbjct: 120 ISAMKKAGVPCVPGSDGPLSDDTTKN-KAFAKRIGYPVIIKASGGGGGRGMRVVRHDKDL 178 Query: 205 AI------AVDLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A + V +E+ + R IE +L + A E Sbjct: 179 EESINMTRAEAKAAFNNDMVYMEKYLENPRHIEVQILADGQGNAIYLAERD--CSMQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E I E+ I +A +G G + E E+N Sbjct: 237 QKVVEE-----APAPGITSEMRRYIGERCAKACMEIGYRGAGTFEFLY-ENGEFYFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 T + +G+ R+ D Sbjct: 291 TRIQVEHT----VTEMITGIDLIKEQLRIAAGQPLSIKQDE 327 >ref|NP_296778.1| (NC_002620) acetyl-coenzyme A carboxylase, biotin carboxylase [Chlamydia muridarum] pir||D81708 acetyl-coenzyme A carboxylase, biotin carboxylase TC0400 [imported] - Chlamydia muridarum (strain Nigg) gb|AAF39257.1| (AE002306) acetyl-coenzyme A carboxylase, biotin carboxylase [Chlamydia muridarum] Length = 457 Score = 228 bits (581), Expect = 7e-59 Identities = 57/341 (16%), Positives = 116/341 (33%), Gaps = 22/341 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKHEH 85 + + +R ++ + I +S + Y + + H+ L A + + K Sbjct: 1 MKKVLIANRGEIAVRIIRACHDLGLSTVAIYSVADQEALHVLLADEAVCIGEAQAAKSYL 60 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 ++ + + D + P +G L E+ + + L F+G + A DK K Sbjct: 61 KIANILAACEITGADAVHPG-YGFLSENANFASICESCGLTFIGPSAESIATMGDKVAAK 119 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 +L + + P + + K+G P+ +K G G+ V ++++ Sbjct: 120 QLAKKIKCPVIPGSDGVVKDEVE--GIRIAEKIGFPIVIKAVAGGGGRGIRIVREKDEFY 177 Query: 206 IAVDLAF------EFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A A + V +E+ I R +E V+G+ GE Sbjct: 178 RAFTAARAEAESGFNNPDVYIEKFIENPRHLEVQVIGDKYGNYVYLGERD--CTVQRRRQ 235 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K I+E + PE+ K+ +AV ++ G + V+ L E E+NT Sbjct: 236 KLIEE-----TPSPILTPEMRAKVGKVAVDLARSAGYFSVGTVEFLLDAEKRFYFMEMNT 290 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 + + +G+ + + N Sbjct: 291 RIQVEHT----ITEEITGIDLLKAQISVAKGEKLPWKQKNI 327 >ref|NP_009777.1| (NC_001134) converts pyruvate to oxaloacetate; Pyc2p [Saccharomyces cerevisiae] sp|P32327|PYC2_YEAST PYRUVATE CARBOXYLASE 2 (PYRUVIC CARBOXYLASE 2) (PCB 2) pir||S46094 pyruvate carboxylase (EC 6.4.1.1) 2 - yeast (Saccharomyces cerevisiae) emb|CAA85182.1| (Z36087) ORF YBR218c [Saccharomyces cerevisiae] gb|AAC49147.1| (U35647) pyruvate carboxylase 2 [Saccharomyces cerevisiae] Length = 1180 Score = 228 bits (581), Expect = 7e-59 Identities = 49/335 (14%), Positives = 100/335 (29%), Gaps = 25/335 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ----VPGKHE 84 + +R ++ + + + + Y H A + + P Sbjct: 22 KILVANRGEIPIRIFRSAHELSMRTIAIYSHEDRLSMHRLKADEAYVIGEEGQYTPVGAY 81 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + VD I P +G L E+ + A + ++G + DK Sbjct: 82 LAMDEIIEIAKKHKVDFIHPG-YGFLSENSEFADKVVKAGITWIGPPAEVIDSVGDKVSA 140 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + L A + P + ++ G P+ +K A G G+ V + Sbjct: 141 RHLAARANVPTVPGTPGPI--ETVQEALDFVNEYGYPVIIKAAFGGGGRGMRVVREGDDV 198 Query: 205 AIAVDLA------FEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A A + VE+ + + IE +L +++ E Sbjct: 199 ADAFQRATSEARTAFGNGTCFVERFLDKPKHIEVQLLADNHGNVVHLFERD--CSVQRRH 256 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ V + E+ D I AV+ + G + + +N EIN Sbjct: 257 QKVVE-----VAPAKTLPREVRDAILTDAVKLAKVCGYRNAGTAEFLVDNQNRHYFIEIN 311 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 + + +G+ ++ A Sbjct: 312 PRIQVEHT----ITEEITGIDIVSAQIQIAAGATL 342 >ref|NP_069058.1| (NC_000917) biotin carboxylase (acc) [Archaeoglobus fulgidus] sp|O30019|PYCA_ARCFU PYRUVATE CARBOXYLASE SUBUNIT A (PYRUVIC CARBOXYLASE A) pir||D69277 biotin carboxylase (acc) homolog - Archaeoglobus fulgidus gb|AAB91012.1| (AE001090) biotin carboxylase (acc) [Archaeoglobus fulgidus] Length = 506 Score = 228 bits (581), Expect = 7e-59 Identities = 51/341 (14%), Positives = 106/341 (30%), Gaps = 24/341 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV-PGKHE 84 + +R ++ + + + + Y H + + P Sbjct: 1 MFSKILVANRGEIAVRVMRACRELGIKTVGVYSSADKRAFHRVYADECYYIGKADPRDSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + I P +G L E+ + F+G K + Sbjct: 61 LNIDRIIEVAKKSGAEAIHPG-YGFLAENAEFAERCEEEGIVFIGPSPEVIRIAGSKVRS 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + ++ AG+ + P E K+G P+ VK + G +G+ V S+E+ Sbjct: 120 RESMQRAGVPVIPGS---PKIDTVDEAKEWAEKIGYPVAVKASGGGGGIGIVVVNSQEEL 176 Query: 205 AIAVD------LAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A ++ D V +E+ + R IE +L + + GE Sbjct: 177 EEAFRKSKKLGESYFKDSTVYLEKYLARPRHIEVQILADQHGNVIHLGER--ECSIQRRH 234 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E A+ E+ +++ +AV+ + +G + EIN Sbjct: 235 QKLIEE-----APSPALNEEMREELGKLAVKGAREIGYTNAGTFEFLY-ENGNFYFLEIN 288 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 + + +G+ R+ RH ++ Sbjct: 289 SRLQVEHT----ITEVVTGIDIVKYQIRIAYGEELRHGQED 325 >ref|NP_229950.1| (NC_002505) acetyl-CoA carboxylase, biotin carboxylase [Vibrio cholerae] pir||F82341 acetyl-CoA carboxylase, biotin carboxylase VC0295 [imported] - Vibrio cholerae (group O1 strain N16961) gb|AAF93469.1| (AE004117) acetyl-CoA carboxylase, biotin carboxylase [Vibrio cholerae] Length = 447 Score = 227 bits (580), Expect = 9e-59 Identities = 49/342 (14%), Positives = 101/342 (29%), Gaps = 22/342 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKH-E 84 + + +R ++ L + + + + + D H+ L + + Sbjct: 1 MLDKVVIANRGEIALRILRACKELGIKTVAVHSTADRDLKHVLLADESICIGPAKSIDSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + I P +G L E+ + + FVG DK Sbjct: 61 LNIPRIISAAEVTGAVAIHPG-YGFLSENADFAEQVERSGFIFVGPRAETIRLMGDKVSA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 ++ AG+ P + ++G P+ +K + G G+ V +E + Sbjct: 120 INAMKKAGVPCVPGSDGP-LDNDEAKNKAHAKRIGYPVIIKASGGGGGRGMRVVRNEAEL 178 Query: 205 AI------AVDLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A + V +E+ + R +E V+ + A E Sbjct: 179 TKSIQMTRAEAKAAFNNDMVYMEKFLENPRHVEVQVIADGQGNAIHLAERD--CSMQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E I E+ I +A +G G + E E+N Sbjct: 237 QKVVEE-----APAPGITEEMRKFIGERCTRACIEIGYRGAGTFEFLY-ENGEFYFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 T + P +G+ R+ ++ Sbjct: 291 TRIQVEH----PVTEMITGVDLIKEQLRIAAGQPLSFKQEDI 328 >ref|NP_349267.1| (NC_003030) Pyruvate carboxylase, PYKA [Clostridium acetobutylicum] gb|AAK80607.1|AE007763_6 (AE007763) Pyruvate carboxylase, PYKA [Clostridium acetobutylicum] Length = 1144 Score = 227 bits (580), Expect = 9e-59 Identities = 52/335 (15%), Positives = 100/335 (29%), Gaps = 23/335 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA--QVPGKHE 84 + +R ++ + + + + Y + + + P Sbjct: 5 FKRVLVANRGEIAIRIFRACHELGIRTVAIYSEEDKLALFRTKADESYLIGQNKGPVDAY 64 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + N VD I P +G L E+ A + F+G DK + Sbjct: 65 LNIDEIINLALKKGVDAIHPG-YGFLSENSEFSRRCTEAGIEFIGPTGDMMDKLGDKINS 123 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K + AG+ P + + E G P+ VK A G G+ V EE Sbjct: 124 KLAAKAAGVKTIPG--VEKPIETEQQAIEFARTCGYPVMVKAAAGGGGRGMRIVEKEEDL 181 Query: 205 AIAVDLA------FEFDHKVIVEQGIKG-REIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A + +E+ ++G + IE VLG+ E Sbjct: 182 IAACRSAKSEAKKAFGIEDIFIEKYLEGPKHIEVQVLGDKYGNIVHLYERD--CSVQRRH 239 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+ +++ E +I A++ +++G ++ L E+N Sbjct: 240 QKVIEL-----TPAVSMSEEKRLEICEDALKIARSIGYRSAGTLEFLLDKHGNHYFIEMN 294 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 + +G+ + E Sbjct: 295 PRVQVEHT----ITEMVTGIDIVQSQILIAEGYKL 325 >ref|NP_439133.1| (NC_000907) acetyl-CoA carboxylase, biotin carboxylase (accC) [Haemophilus influenzae Rd] sp|P43873|ACCC_HAEIN BIOTIN CARBOXYLASE (A SUBUNIT OF ACETYL-COA CARBOXYLASE (ACC) pir||F64105 biotin carboxylase (EC 6.3.4.14) - Haemophilus influenzae (strain Rd KW20) gb|AAC22632.1| (U32778) acetyl-CoA carboxylase, biotin carboxylase (accC) [Haemophilus influenzae Rd] Length = 448 Score = 227 bits (580), Expect = 1e-58 Identities = 55/342 (16%), Positives = 108/342 (31%), Gaps = 22/342 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 + + +R ++ L + + + + + D H+ L + P K Sbjct: 1 MLEKVVIANRGEIALRILRACKELGIKTVAVHSTADRDLKHVLLADETICIGPAPSAKSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + D I P +G L E+ + + F+G DK Sbjct: 61 LNIPAIIAAAEVTGADAIHPG-YGFLSENADFAEQVERSGFTFIGPTADVIRLMGDKVSA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + ++ AG+ P +N + E+ ++G P+ +K + G G+ V SE+ Sbjct: 120 IKAMKKAGVPCVPGSDGPVSNDIAKN-KEIAKRIGYPIIIKASGGGGGRGMRVVRSEDAL 178 Query: 205 AI------AVDLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A + V +E+ + R +E VL + + A E Sbjct: 179 EESIAMTKAEAKAAFNNDMVYMEKYLENPRHVEIQVLADTHGNAVYLAERD--CSMQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E I E+ I + A +G G + E E+N Sbjct: 237 QKVVEE-----APAPGITEEVRRDIGSRCANACVEIGYRGAGTFEFLY-ENGEFYFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 T + P +G+ R+ ++ Sbjct: 291 TRIQVEH----PVTEMITGVDLVKEQLRIAAGLPISFKQEDI 328 >ref|NP_437243.1| (NC_003078) putative methylcrotonoyl-CoA carboxylase biotinylated subunit protein [Sinorhizobium meliloti] emb|CAC49103.1| (AL603644) putative methylcrotonoyl-CoA carboxylase biotinylated subunit protein [Sinorhizobium meliloti] Length = 662 Score = 227 bits (579), Expect = 1e-58 Identities = 64/347 (18%), Positives = 114/347 (32%), Gaps = 27/347 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKHE 84 + +R ++ I + + + Y D H+AL A + P + Sbjct: 1 MFSKLLIANRGEIACRIIRTARRLGIRTVAVYSDADGDALHVALADEAIRIGGAPAAESY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 I P +G L E+ + A + FVG A A KD Sbjct: 61 LASAPIVQAARSVGAQAIHPG-YGFLSENADFAEAVAEAGMIFVGPPPAAIRAMGLKDAA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K L+ +G+ + P + A+ ++G P+ +K G G+ +V +E + Sbjct: 120 KALMERSGVPVVPGYHG--EEQDASFLADRAREIGYPVLIKARAGGGGKGMRRVERQEDF 177 Query: 205 AIAVDLA------FEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A++ A D V++E+ + K R IE V G+ + E Sbjct: 178 GPALEAARREAESAFGDGSVLLERYLTKPRHIEMQVFGDRHGNIVHLFERD--CSLQRRH 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENE-----VV 312 K I+E + E+ + AV+A Q +G G V+ N Sbjct: 236 QKVIEE-----APAPGMTAEVRRAMGDAAVRAAQAIGYVGAGTVEFIADVTNGLWPDHFY 290 Query: 313 INEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 E+NT + P +G+ + R+ + Sbjct: 291 FMEMNTRLQVEH----PVTEAITGIDLVEWQLRVASGEPLPKKQADI 333 >sp|Q47823|DDL_ENTGA D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAB17903.1| (U39789) D-alanine:D-alanine ligase [Enterococcus gallinarum] Length = 316 Score = 227 bits (578), Expect = 2e-58 Identities = 118/320 (36%), Positives = 186/320 (57%), Gaps = 17/320 (5%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 +++ +++GG+SAEH+VSL SA ++V+A+ + + V L+ I + GQW + + Sbjct: 1 MKIILLYGGRSAEHDVSLLSAFSVVNAVYYNYYQVQLVMITRDGQWLKGSLLTEAPTSKE 60 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + L SA Q G+ ++FP++HG GEDG++QG L Sbjct: 61 VLN--LTDSAYQGTP-----------IQPGEIKEEDAIVFPLLHGPNGEDGTIQGFLETI 107 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITL---TRANRHNISFAEVESKLGL 180 +P+VG+ VL SA MDK +TK +L+ AG+ P++ + F + E L Sbjct: 108 GMPYVGAGVLTSACGMDKIMTKYILQAAGIPQVPYVPVLKNYWKENPKKVFEQCEGSLLY 167 Query: 181 PLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQ 240 P+F+KPAN GSSVG++K + E+ A+ A+ +D + IVEQGI+ REIE AVLGN++ + Sbjct: 168 PMFIKPANMGSSVGITKAENREELQNALQEAYRYDTRAIVEQGIEAREIEVAVLGNEDVR 227 Query: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300 + GEIV FY Y++KY+D ++ +PA I E K + A +AY LG +G++R Sbjct: 228 TTMPGEIVKDVAFYDYNSKYLDNK-IEMQIPAQIPEETQAKAQEFAKKAYTMLGGSGLSR 286 Query: 301 VDVFLTPENEVVINEINTLP 320 D FLT +NE+ +NE+NT+P Sbjct: 287 CDFFLTNKNELFLNELNTIP 306 >ref|NP_540842.1| (NC_003317) acetyl-CoA carboxylase alpha chain / propionyl-CoA carboxylase alpha chain [Brucella melitensis] gb|AAL53106.1| (AE009626) acetyl-CoA carboxylase alpha chain / propionyl-CoA carboxylase alpha chain [Brucella melitensis] Length = 678 Score = 226 bits (577), Expect = 2e-58 Identities = 63/347 (18%), Positives = 114/347 (32%), Gaps = 27/347 (7%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-H 83 + +R ++ I + ++ + Y H+ + A + Sbjct: 23 VMFQKILIANRGEIACRVIRTARKLGIATVAIYSDADARALHVEMADEAVRVGPAASAQS 82 Query: 84 EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + + I P +G L E+ + + A L F+G A A KD Sbjct: 83 YLNVDAIIKAAKETGAEAIHPG-YGFLSENPAFVDAVEEAGLIFIGPSAKAIRAMGLKDA 141 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 K L+ AG+ + P + ++ P+ +K G G+ +V S Sbjct: 142 AKALMEKAGVPVVPGYHGDNQDGA--FLKSEADRITYPVLIKARAGGGGKGMRRVDSAAD 199 Query: 204 YAIAVD------LAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 +A A++ A D V+VE+ + K R IE V G+++ A E Sbjct: 200 FAAALESARREAEASFGDGAVLVEKYMAKPRHIEVQVFGDNHGNAVHLFERD--CSLQRR 257 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE-----NEV 311 K I+E + E+ + AV+A T+G +G V+ + Sbjct: 258 HQKVIEE-----APAPGMTEEMRAAMGEAAVKAALTIGYSGAGTVEFIADVSEGLRPDRF 312 Query: 312 VINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 E+NT + P +GL + R+ D Sbjct: 313 FFMEMNTRLQVEH----PVTEAITGLDLVEWQLRVASGEALPKRQDE 355 >ref|NP_390314.1| (NC_000964) acetyl-CoA carboxylase subunit (biotin carboxylase subunit) [Bacillus subtilis] pir||A69581 acetyl-CoA carboxylase (biotin carboxylase subunit) accC - Bacillus subtilis dbj|BAA12569.1| (D84432) YqhX [Bacillus subtilis] emb|CAB14365.1| (Z99116) acetyl-CoA carboxylase subunit (biotin carboxylase subunit) [Bacillus subtilis] Length = 450 Score = 226 bits (577), Expect = 2e-58 Identities = 61/342 (17%), Positives = 117/342 (33%), Gaps = 23/342 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKH-E 84 I + +R ++ + I + + + Y D H+ + A + K Sbjct: 1 MIKKLLIANRGEIAVRIIRACRELGIETVAVYSEADKDALHVQMADEAFCIGPKASKDSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + L D I P +G L E+ + N+ FVG A + KDV Sbjct: 61 LNVTNIVSVAKLTGTDAIHPG-YGFLAENADFAELCEEVNVTFVGPSPDAISKMGTKDVA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + ++ AG+ I P N + +++G P+ +K G G+ +EE+ Sbjct: 120 RETMKQAGVPIVPGSQGIIEN--VEEAVSLANEIGYPVIIKATAGGGGKGIRVARTEEEL 177 Query: 205 AIAVD------LAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + + V +E+ I R +E VL ++ GE Sbjct: 178 INGIKITQQEAATAFRNPGVYIEKYIEDFRHVEIQVLADNYGNTIHLGERD--CSIQRRL 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEI 316 K ++E A+ EI +++ AV+A + +G G V+ E E+ Sbjct: 236 QKLLEE-----SPSPALDSEIREQMGDAAVKAAKAVGYTGAGTVEFIYDYNEQRYYFMEM 290 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 NT + P +G ++ ++ Sbjct: 291 NTRIQVEH----PVTEMVTGTDLIKEQIKVASGMELSLKQED 328 >ref|NP_219107.1| (NC_000919) D-alanine--D-alanine ligase (ddlA) [Treponema pallidum] sp|O83676|DDL_TREPA D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||A71296 D-alanine--D-alanine ligase (EC 6.3.2.4) A ddlA - syphilis spirochete gb|AAC26568.1| (AE001241) D-alanine--D-alanine ligase (ddlA) [Treponema pallidum] Length = 396 Score = 226 bits (577), Expect = 2e-58 Identities = 126/345 (36%), Positives = 200/345 (57%), Gaps = 5/345 (1%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 V +++GG+SAEH+VS++SA+ + + + V+L+GI ++G W+ A Sbjct: 3 HVTLLYGGRSAEHDVSVRSARFVARTL-CLQHTVMLIGITRRGVWYAQPACALEQLCTGT 61 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 ++++ + G DV+FP++HG+ GEDG++QG+L + Sbjct: 62 VALSIQEDEKRRVCLVPGGGTAGAFVIAGM-PCVTDVVFPVLHGSYGEDGTVQGLLEMLQ 120 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR---HNISFAEVESKLGLP 181 +P+VG V ASA MDK K L + AGL + PF+ + A++E++LG P Sbjct: 121 VPYVGCGVCASALAMDKVKAKMLWQAAGLPVLPFVFFRKDAWRMHMQEFVAQLETRLGYP 180 Query: 182 LFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQA 241 LFVKPA GSSVG S V + A++ AF++D V+VE+ ++ REIECA+ GN Sbjct: 181 LFVKPAQAGSSVGASAVQTRAPLIPAIEAAFQWDEVVLVERYVRAREIECALSGNGPYTV 240 Query: 242 STCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARV 301 GE++ FY Y+ KY D A+V+V A + ++I +A++AY+ LG G+ARV Sbjct: 241 HGAGEVIAQGAFYDYEEKYADASVARVLVTAPLETAQYEQITTLALRAYEALGLTGLARV 300 Query: 302 DVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 D FL EV +NE+NT+PGFT+IS++P++ QA+G+ DL+ +L Sbjct: 301 DFFLLETGEVYVNEVNTMPGFTSISLFPQICQAAGVAPQDLMAQL 345 >emb|CAA42544.1| (X59890) pyruvate carboxylase [Saccharomyces cerevisiae] Length = 1185 Score = 226 bits (576), Expect = 3e-58 Identities = 49/335 (14%), Positives = 98/335 (28%), Gaps = 25/335 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ----VPGKHE 84 + +R ++ + + + + Y H A + + P Sbjct: 22 KILVANRGEIPIRIFRSAHELSMRTIAIYSHEDRLSMHRLKADEAYVIGEEGQYTPVGAY 81 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + VD I P +G L E+ + A + ++G + DK Sbjct: 82 LAMDEIIEIAKKHKVDFIHPG-YGFLSENSEFADKVVKAGITWIGPPAEVIESVGDKVSA 140 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + L A + P + ++ G P+ +K A G G+ V + Sbjct: 141 RHLAARANVPTVPGTPGPI--ETVQEALDFVNEYGYPVIIKAAFGGGGRGMRVVREGDDV 198 Query: 205 AIAVDLA------FEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A A + VE+ + + IE +L + + E Sbjct: 199 ADAFQRATSEARTAFGNGTCFVERFLDKPKHIEVQLLADKHGNVVHLFERD--CSVQRRH 256 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ V E+ D I AV+ + G + + +N EIN Sbjct: 257 QKVVE-----VAPAKTFPREVRDAILTDAVKLAKVCGYRNAGTAEFLVDNQNRHYFIEIN 311 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 + + +G+ ++ A Sbjct: 312 PRIQVEHT----ITEEITGIDIVSAQIQIAAGATL 342 >ref|NP_282187.1| (NC_002163) putative pyruvate carboxylase A subunit [Campylobacter jejuni] pir||B81306 probable pyruvate carboxylase (EC 6.4.1.1) A chain Cj1037c [imported] - Campylobacter jejuni (strain NCTC 11168) emb|CAB73293.1| (AL139077) putative pyruvate carboxylase A subunit [Campylobacter jejuni] Length = 481 Score = 226 bits (576), Expect = 3e-58 Identities = 52/341 (15%), Positives = 111/341 (32%), Gaps = 20/341 (5%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 I + +R ++ + I H+ + + + H+ + A + + Sbjct: 3 QIHKILIANRAEIAVRVIRACRDLHIKSVAVFTEPDRECLHVKIADEAYRIGTDAIRGYL 62 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + D I P +G L E+ A + F+G +K++ + Sbjct: 63 DVARIVEIAKACGADAIHPG-YGFLSENYEFAKACEDAGIIFIGPKSEVIHKMGNKNIAR 121 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 +L+ G+ I P + K+G P+ +K + G G+ V E+ Sbjct: 122 KLMAKNGIPIVPGTEKLN-SYSMEEIKIFAEKIGYPVILKASGGGGGRGIRVVHKEQDLE 180 Query: 206 IAVDLA------FEFDHKVIVEQG-IKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A + + + +V +E+ + R IE +LG++ E Sbjct: 181 NAFESCKREALTYFNNDEVFMEKYVVNPRHIEFQILGDNYGNIIHLCERD--CSIQRRHQ 238 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K I+ + I+ + + AV A + +G ++ L N E+NT Sbjct: 239 KVIE-----IAPCPGISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDDYNRFYFMEMNT 293 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 + P + +G+ R+ + + Sbjct: 294 RIQVEH----PITEEITGIDLIVRQIRIAAGEILDLEQSDI 330 >gb|AAC41643.1| (M64926) urea amidolyase [Saccharomyces cerevisiae] Length = 1835 Score = 226 bits (576), Expect = 3e-58 Identities = 56/338 (16%), Positives = 106/338 (30%), Gaps = 24/338 (7%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKH-EH 85 + +R ++ + I + + + Y H+ + L Sbjct: 633 FDTVLIANRGEIAVRIIKTLKKLGIRSVAVYSDPDKYSQHVTDADVSVPLHGTTAAQTYL 692 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + + I P +G L E+ A + FVG K + Sbjct: 693 DMNKIIDAAKQTNAQAIIPG-YGFLSENADFSDACTSAGITFVGPSGDIIRGLGLKHSAR 751 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 ++ + AG+ + P L +V ++L P+ VK G +G+ KV SEE Sbjct: 752 QIAQKAGVPLVPGSLLIT---SVEEAKKVAAELEYPVMVKSTAGGGGIGLQKVDSEEDIE 808 Query: 206 IAVD------LAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 + F D V +++ I R +E ++G+ +A GE + Sbjct: 809 HIFETVKHQGETFFGDAGVFLKRFIENARHVEVQLMGDGFGKAIALGERD--CSLQRRNQ 866 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEIN 317 K I+E + + +R A L V+ ++E E+N Sbjct: 867 KVIEE-----TPAPNLPEKTRLALRKAAESLGSLLNYKCAGTVEFIYDEKKDEFYFLEVN 921 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 T + P +GL + + R+ Sbjct: 922 TRLQVEH----PITEMVTGLDLVEWMIRIAANDAPDFD 955 >sp|Q9ZGN0|DDL_MYCSM D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAC99396.1| (AF077728) D-alanine:D-alanine ligase [Mycobacterium smegmatis] Length = 373 Score = 226 bits (575), Expect = 3e-58 Identities = 150/363 (41%), Positives = 214/363 (58%), Gaps = 16/363 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 + RV +V+GG+S+EH +S SA +I+ +D RF+VV +GI G W ++D L Sbjct: 10 RTRVAVVYGGRSSEHAISCVSAGSILRNLDPERFEVVAIGITPDGSWVLTDGRPETLAIT 69 Query: 63 D---PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLP-TVDVIFPIVHGTLGEDGSLQG 118 D PA + +L P + L + VDV+FP++HG GEDG++QG Sbjct: 70 DGKLPAVTEASGTELALPAAPNRSGQLLALGNGPGEILAAVDVVFPVLHGPYGEDGTIQG 129 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 +L +A +P+VGS VLASAA MDK+ TK+LL GL I + L E +L Sbjct: 130 LLELAGVPYVGSGVLASAAGMDKEYTKKLLAAEGLPIGDQVVLRPGVETLD--LEQRERL 187 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 GLP+FVKPA GSS+GVS+VT+ ++ AV LA D KVIVE + GRE+EC VL + Sbjct: 188 GLPVFVKPARGGSSIGVSRVTAWDELPAAVALARRHDPKVIVEAAVIGRELECGVLEFPD 247 Query: 239 PQ--------ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 + G FY + TKY++ D A++ VPA + ++ D+IR +AV+A+ Sbjct: 248 GRLEASTVGEIRVAGVRGREDGFYDFATKYLE-DAAELDVPAKVDDDVADEIRQLAVRAF 306 Query: 291 QTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 +GC G+ARVD FLT + VINEINT+PGFT ISMYP++W A G+ Y L+ +++ A Sbjct: 307 TAIGCQGLARVDFFLTDDG-PVINEINTMPGFTTISMYPRMWAAGGIDYPTLLAAMVDTA 365 Query: 351 LER 353 + R Sbjct: 366 IAR 368 >sp|P49787|ACCC_BACSU BIOTIN CARBOXYLASE (A SUBUNIT OF ACETYL-COA CARBOXYLASE (ACC) gb|AAB00183.1| (U36245) biotin carboxylase [Bacillus subtilis] Length = 448 Score = 224 bits (572), Expect = 7e-58 Identities = 61/342 (17%), Positives = 116/342 (33%), Gaps = 23/342 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKH-E 84 I + +R ++ + I + + + Y D H+ + A + K Sbjct: 1 MIKKLLIANRGEIAVRIIRACRELGIETVAVYSEADKDALHVQMADEAFCIGPKASKDSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + L D I P +G L E+ + N+ FVG A + KDV Sbjct: 61 LNVTNIVSVAKLTGTDAIHPG-YGFLAENADFAELCEEVNVTFVGPSADAISKMGTKDVA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + ++ AG+ I P N + +++G P+ +K G G+ +EE+ Sbjct: 120 RETMKQAGVPIVPGSQGIIEN--VEEAVSLANEIGYPVIIKATAGGGGKGIRVARTEEEL 177 Query: 205 AIAVD------LAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + + V +E+ I R +E VL ++ GE Sbjct: 178 INGIKITQQEAATAFGNPGVYIEKYIEDFRHVEIQVLADNYGNTIHLGERD--CSIQRRL 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEI 316 K + E A+ EI +++ AV+A + +G G V+ E E+ Sbjct: 236 QKLLGE-----SPSPALGSEIREQMGDAAVKAAKAVGYTGAGTVEFIYDYNEQRYYFMEM 290 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 NT + P +G ++ ++ Sbjct: 291 NTRIQVEH----PVTEMVTGTDLIKEQIKVASGMELSLKQED 328 >ref|NP_457756.1| (NC_003198) biotin carboxylase [Salmonella enterica subsp. enterica serovar Typhi] ref|NP_462290.1| (NC_003197) acetyl CoA carboxylase, biotin carboxylase subunit [Salmonella typhimurium LT2] gb|AAL22249.1| (AE008856) acetyl CoA carboxylase, biotin carboxylase subunit [Salmonella typhimurium LT2] emb|CAD07895.1| (AL627278) biotin carboxylase [Salmonella enterica subsp. enterica serovar Typhi] Length = 449 Score = 224 bits (572), Expect = 8e-58 Identities = 55/341 (16%), Positives = 105/341 (30%), Gaps = 22/341 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HE 84 + + +R ++ L + + + + + D H+ L + P Sbjct: 1 MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + I P +G L E+ + + + F+G DK Sbjct: 61 LNIPAIISAAEITGAVAIHPG-YGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 ++ AG+ P + N + ++G P+ +K + G G+ V S+ + Sbjct: 120 ITAMKKAGVPTVPGSDGPLGDDMNAN-RAHAKRIGYPVIIKASGGGGGRGMRVVRSDAEL 178 Query: 205 A------IAVDLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A A + V +E+ + R IE VL + A E Sbjct: 179 AQSISMTKAEAKAAFSNDMVYMEKYLENPRHIEIQVLADGQGNAIYLAERD--CSMQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E I PE+ I +A +G G + E E+N Sbjct: 237 QKVVEE-----APAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF-ENGEFYFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 T + P +G+ R+ D Sbjct: 291 TRIQVEH----PVTEMITGVDLIKEQLRIAAGQPLSITQDE 327 >ref|NP_337574.1| (NC_002755) D-alanine--D-alanine ligase [Mycobacterium tuberculosis CDC1551] gb|AAK47388.1| (AE007126) D-alanine--D-alanine ligase [Mycobacterium tuberculosis CDC1551] Length = 373 Score = 224 bits (572), Expect = 8e-58 Identities = 149/363 (41%), Positives = 211/363 (58%), Gaps = 16/363 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLL--N 60 ++RV +VFGG+S EH +S SA +I+ +D RFDV+ +GI G W ++DA+ L Sbjct: 10 RVRVAVVFGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTIT 69 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ--PLPTVDVIFPIVHGTLGEDGSLQG 118 + + + QL+ G L +VDV+FP++HG GEDG++QG Sbjct: 70 NRELPQVKSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQG 129 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 +L +A +P+VG+ VLASA MDK+ TK+LL GL + + L + +L Sbjct: 130 LLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTL--HRQECERL 187 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 GLP+FVKPA GSS+GVS+V+S +Q AV A D KVIVE I GRE+EC VL + Sbjct: 188 GLPVFVKPARGGSSIGVSRVSSWDQLPAAVARARRHDPKVIVEAAISGRELECGVLEMPD 247 Query: 239 PQ--------ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 G FY + TKY+D D A++ VPA + ++ + IR +A++A+ Sbjct: 248 GTLEASTLGEIRVAGVRGREDSFYDFATKYLD-DAAELDVPAKVDDQVAEAIRQLAIRAF 306 Query: 291 QTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + C G+ARVD FLT + VINEINT+PGFT ISMYP++W ASG+ Y L+ +IE A Sbjct: 307 AAIDCRGLARVDFFLTDDG-PVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIETA 365 Query: 351 LER 353 L R Sbjct: 366 LAR 368 >ref|NP_417722.1| (NC_000913) acetyl CoA carboxylase, biotin carboxylase subunit [Escherichia coli K12] sp|P24182|ACCC_ECOLI BIOTIN CARBOXYLASE (A SUBUNIT OF ACETYL-COA CARBOXYLASE (ACC) pir||JS0632 acetyl-CoA carboxylase (EC 6.4.1.2) biotin carboxylase chain [validated] - Escherichia coli pdb|1DV1|A Chain A, Structure Of Biotin Carboxylase (Apo) pdb|1DV1|B Chain B, Structure Of Biotin Carboxylase (Apo) pdb|1BNC|A Chain A, Mol_id: 1; Molecule: Biotin Carboxylase; Chain: A, B; Ec: 6.3.4.14 pdb|1BNC|B Chain B, Mol_id: 1; Molecule: Biotin Carboxylase; Chain: A, B; Ec: 6.3.4.14 gb|AAA23409.1| (M80458) biotin carboxylase [Escherichia coli] gb|AAA23746.1| (M83198) biotin carboxylase [Escherichia coli] gb|AAA58059.1| (U18997) biotin carboxylase [Escherichia coli] gb|AAC76288.1| (AE000404) acetyl CoA carboxylase, biotin carboxylase subunit [Escherichia coli K12] Length = 449 Score = 224 bits (571), Expect = 1e-57 Identities = 51/343 (14%), Positives = 105/343 (29%), Gaps = 22/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HE 84 + + +R ++ L + + + + + D H+ L + P Sbjct: 1 MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + I P +G L E+ + + + F+G DK Sbjct: 61 LNIPAIISAAEITGAVAIHPG-YGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 ++ AG+ P + + + + ++G P+ +K + G G+ V + + Sbjct: 120 IAAMKKAGVPCVPGSDGPLGDDMDKN-RAIAKRIGYPVIIKASGGGGGRGMRVVRGDAEL 178 Query: 205 A------IAVDLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A A + V +E+ + R +E VL + A E Sbjct: 179 AQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERD--CSMQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E I PE+ I +A +G G + E E+N Sbjct: 237 QKVVEE-----APAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF-ENGEFYFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P +G+ R+ + Sbjct: 291 TRIQVEH----PVTEMITGVDLIKEQLRIAAGQPLSIKQEEVH 329 >gb|AAA34843.1| (J03889) pyruvate carboxylase (EC 6.4.1.1) [Saccharomyces cerevisiae] Length = 1178 Score = 224 bits (571), Expect = 1e-57 Identities = 49/323 (15%), Positives = 99/323 (30%), Gaps = 25/323 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV----PGKHE 84 + +R ++ + + + + Y H A + +V P Sbjct: 21 KILVANRGEIPIRIFRTAHELSMQTVAIYSHEDRLSTHKQKADEAYVIGEVGQYTPVGAY 80 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + VD I P +G L E+ + A + ++G + DK Sbjct: 81 LAIDEIISIAQKHQVDFIHPG-YGFLSENSEFADKVVKAGITWIGPPAEVIDSVGDKVSA 139 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + L A + P + ++ G P+ +K A G G+ V + Sbjct: 140 RNLAAKANVPTVPGTPGPI--ETVEEALDFVNEYGYPVIIKAAFGGGGRGMRVVREGDDV 197 Query: 205 AIAVDLA------FEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A A + VE+ + + IE +L +++ E Sbjct: 198 ADAFQRATSEARTAFGNGTCFVERFLDKPKHIEVQLLADNHGNVVHLFERD--CSVQRRH 255 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ V + E+ D I AV+ + G + + +N EIN Sbjct: 256 QKVVE-----VAPAKTLPREVRDAILTDAVKLAKECGYRNAGTAEFLVDNQNRHYFIEIN 310 Query: 318 TLPGFTNISMYPKLWQASGLGYT 340 + + +G+ Sbjct: 311 PRIQVEHT----ITEEITGIDIV 329 >ref|NP_302152.1| (NC_002677) D-alanine-D-alanine ligase A [Mycobacterium leprae] emb|CAC30631.1| (AL583923) D-alanine-D-alanine ligase A [Mycobacterium leprae] Length = 384 Score = 224 bits (571), Expect = 1e-57 Identities = 148/367 (40%), Positives = 215/367 (58%), Gaps = 20/367 (5%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 ++RV +VFGG+S EH VS SA +I+ +D+ RFDVV +GI +G W ++D + L Sbjct: 17 RVRVAVVFGGRSNEHAVSCLSAGSILRNLDRQRFDVVAVGITPEGTWMLTDPNPDALAIA 76 Query: 63 DPAHIALRPSATSLAQVPG--------KHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDG 114 + A+ + +P G+ L +VDV+FP++HG GEDG Sbjct: 77 NRQLPAVSCESGIELTLPADPRRSGQLVSLSHGAGLGAGEVLTSVDVVFPVLHGPYGEDG 136 Query: 115 SLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 ++QG+L +A +P+VG+ VLASAA MDK+ TK+L GL ++ + L + Sbjct: 137 TIQGLLELARVPYVGAGVLASAAGMDKEFTKKLFAAEGLPLSAYTVLRPLRPTL--HRQE 194 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVL 234 +L LP+FVKPA GSS+G+S+V+S Q A+ A D KVIVE + GRE+EC VL Sbjct: 195 CERLSLPVFVKPARGGSSIGISRVSSWGQLPSAIAYARRHDPKVIVEAAVNGRELECGVL 254 Query: 235 G--NDNPQASTCGEIV------LTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIA 286 + AS GEI FY + TKY+D D A++ VPA + ++ D++R +A Sbjct: 255 EMPDGTVAASAVGEIRVAGVSGSEDSFYDFTTKYLD-DAAELDVPAKVDDDVADEVRQLA 313 Query: 287 VQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 +QA++ + C G+ARVD FLT + VINEINT+PGFT SMYPKLW S + Y L+ + Sbjct: 314 IQAFRAIDCQGLARVDFFLTDDG-PVINEINTMPGFTMTSMYPKLWAVSSVDYPTLLATM 372 Query: 347 IELALER 353 ++ AL R Sbjct: 373 VDTALAR 379 >ref|NP_312155.1| (NC_002695) acetyl CoA carboxylase biotin carboxylase subunit [Escherichia coli O157:H7] dbj|BAB37551.1| (AP002564) acetyl CoA carboxylase biotin carboxylase subunit [Escherichia coli O157:H7] Length = 449 Score = 224 bits (571), Expect = 1e-57 Identities = 50/343 (14%), Positives = 105/343 (30%), Gaps = 22/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HE 84 + + +R ++ L + + + + + D H+ L + P Sbjct: 1 MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + I P +G L E+ + + + F+G DK Sbjct: 61 LNIPAIISAAEITGAVAIHPG-YGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 ++ AG+ P + + + + ++G P+ +K + G G+ V + + Sbjct: 120 IAAMKKAGVPCVPGSDGPLGDDMDKN-RAIAKRIGYPVIIKASGGGGGRGMRVVRGDAEL 178 Query: 205 A------IAVDLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A A + V +E+ + R +E VL + + E Sbjct: 179 AQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNSIYLAERD--CSMQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E I PE+ I +A +G G + E E+N Sbjct: 237 QKVVEE-----APAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF-ENGEFYFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P +G+ R+ + Sbjct: 291 TRIQVEH----PVTEMITGVDLIKEQLRIAAGQPLSIKQEEVH 329 >ref|NP_250702.1| (NC_002516) probable acyl-CoA carboxylase alpha chain [Pseudomonas aeruginosa] pir||A83395 probable acyl-CoA carboxylase alpha chain PA2012 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG05400.1|AE004627_8 (AE004627) probable acyl-CoA carboxylase alpha chain [Pseudomonas aeruginosa] Length = 655 Score = 224 bits (571), Expect = 1e-57 Identities = 62/344 (18%), Positives = 112/344 (32%), Gaps = 22/344 (6%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV-PGKH 83 ++I + +R ++ + + + + H+A A L P Sbjct: 6 RSIQRLLVANRGEIACRVMRSARALGIGSVAVHSDIDRHARHVAEADIAVDLGGAKPADS 65 Query: 84 EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + I P +G L E+ A L F+G A A K Sbjct: 66 YLRGDRIIAAALASGAQAIHPG-YGFLSENADFARACEEAGLLFLGPPAAAIDAMGSKSA 124 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 K L+ +AG+ + P + +F ++G P+ +K A G G+ V E + Sbjct: 125 AKALMEEAGVPLVPGYHG--EAQDLETFRREAGRIGYPVLLKAAAGGGGKGMKVVEREAE 182 Query: 204 YAIAVDL------AFEFDHKVIVEQG-IKGREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 A A+ A D +++VE+ +K R +E V + + E Sbjct: 183 LAEALSSAQREAKAAFGDARMLVEKYLLKPRHVEIQVFADRHGHCLYLNERD--CSIQRR 240 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEI 316 K ++E + E+ + AV+A Q +G G V+ L + E+ Sbjct: 241 HQKVVEE-----APAPGLGAELRRAMGEAAVRAAQAIGYVGAGTVEFLLDERGQFFFMEM 295 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 NT + P +GL R+ + Sbjct: 296 NTRLQVEH----PVTEAITGLDLVAWQIRVARGEALPLTQEQVP 335 >ref|NP_420691.1| (NC_002696) acetyl-CoA carboxylase, biotin carboxylase [Caulobacter crescentus] gb|AAK23859.1| (AE005862) acetyl-CoA carboxylase, biotin carboxylase [Caulobacter crescentus] Length = 448 Score = 224 bits (570), Expect = 1e-57 Identities = 59/341 (17%), Positives = 114/341 (33%), Gaps = 23/341 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKHE 84 + +R ++ L + ++ + + + + L + + P K Sbjct: 1 MFDKILIANRGEIALRVHRACKEMGIATVAVHSEADRNSMWVRLADESVCIGPAPAAKSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + I P +G L E+ ++ F+G DK Sbjct: 61 LNIPSIIAAAEITGAQAIHPG-YGFLSENARFAEIVGAHGFTFIGPKPEHIRMMGDKITA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K+ ++DAG+ + P + E K+G P+ +K A G G+ + E Sbjct: 120 KQAVKDAGIPVVPGSDGGVS--TEEEAFEAAEKIGFPVLIKAAAGGGGRGMKVAQTREDL 177 Query: 205 AIAV------DLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A AV A D V +E+ ++ R IE V+ + + GE Sbjct: 178 AEAVSTARAEARAAFGDDTVYMERYLQKPRHIELQVIADSHGNVVHLGERD--CSLQRRH 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E A++ E KI + V A + +G G+ ++ +E E+N Sbjct: 236 QKVLEE-----APSPALSAEGRAKIGKVVVDAVKAIGYLGVGTIEFLW-ENDEFFFIEMN 289 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 T + P +G+ R+ D+ Sbjct: 290 TRLQVEH----PVTEAITGIDLVREQIRIAAGLPLSFTQDD 326 >ref|NP_217497.1| (NC_000962) ddlA [Mycobacterium tuberculosis H37Rv] sp|P95114|DDL_MYCTU D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||B70673 probable ddlA - Mycobacterium tuberculosis (strain H37RV) emb|CAB05431.1| (Z83018) ddlA [Mycobacterium tuberculosis H37Rv] Length = 373 Score = 224 bits (570), Expect = 1e-57 Identities = 148/363 (40%), Positives = 210/363 (57%), Gaps = 16/363 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLL--N 60 ++RV +VFGG+S EH +S SA +I+ +D RFDV+ +GI G W ++DA+ L Sbjct: 10 RVRVAVVFGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTIT 69 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQ--PLPTVDVIFPIVHGTLGEDGSLQG 118 + + + QL+ G L +VDV+FP++HG GEDG++QG Sbjct: 70 NRELPQVKSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQG 129 Query: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKL 178 +L +A +P+VG+ VLASA MDK+ TK+LL GL + + L + +L Sbjct: 130 LLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTL--HRQECERL 187 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDN 238 GLP+FVKPA GSS+GVS+V+S +Q AV A D KVIVE I GRE+EC VL + Sbjct: 188 GLPVFVKPARGGSSIGVSRVSSWDQLPAAVARARRHDPKVIVEAAISGRELECGVLEMPD 247 Query: 239 PQ--------ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 G FY + TKY+D D A++ VPA + ++ + IR +A++A+ Sbjct: 248 GTLEASTLGEIRVAGVRGREDSFYDFATKYLD-DAAELDVPAKVDDQVAEAIRQLAIRAF 306 Query: 291 QTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + C G+ARVD FLT + VINEINT+PGFT ISMYP++W ASG+ Y L+ +IE Sbjct: 307 AAIDCRGLARVDFFLTDDG-PVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIETT 365 Query: 351 LER 353 L R Sbjct: 366 LAR 368 >ref|NP_011453.1| (NC_001139) converts pyruvate to oxaloacetate; Pyc1p [Saccharomyces cerevisiae] sp|P11154|PYC1_YEAST PYRUVATE CARBOXYLASE 1 (PYRUVIC CARBOXYLASE 1) (PCB 1) pir||QYBYP pyruvate carboxylase (EC 6.4.1.1) 1 [validated] - yeast (Saccharomyces cerevisiae) emb|CAA96765.1| (Z72584) ORF YGL062w [Saccharomyces cerevisiae] Length = 1178 Score = 224 bits (570), Expect = 1e-57 Identities = 49/323 (15%), Positives = 99/323 (30%), Gaps = 25/323 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV----PGKHE 84 + +R ++ + + + + Y H A + +V P Sbjct: 21 KILVANRGEIPIRIFRTAHELSMQTVAIYSHEDRLSTHKQKADEAYVIGEVGQYTPVGAY 80 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + VD I P +G L E+ + A + ++G + DK Sbjct: 81 LAIDEIISIAQKHQVDFIHPG-YGFLSENSEFADKVVKAGITWIGPPAEVIDSVGDKVSA 139 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + L A + P + ++ G P+ +K A G G+ V + Sbjct: 140 RNLAAKANVPTVPGTPGPI--ETVEEALDFVNEYGYPVIIKAAFGGGGRGMRVVREGDDV 197 Query: 205 AIAVDLA------FEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A A + VE+ + + IE +L +++ E Sbjct: 198 ADAFQRATSEARTAFGNGTCFVERFLDKPKHIEVQLLADNHGNVVHLFERD--CSVQRRH 255 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++ V + E+ D I AV+ + G + + +N EIN Sbjct: 256 QKVVE-----VAPAKTLPREVRDAILTDAVKLAKECGYRNAGTAEFLVDNQNRHYFIEIN 310 Query: 318 TLPGFTNISMYPKLWQASGLGYT 340 + + +G+ Sbjct: 311 PRIQVEHT----ITEEITGIDIV 329 >ref|NP_289824.1| (NC_002655) acetyl CoA carboxylase, biotin carboxylase subunit [Escherichia coli O157:H7 EDL933] gb|AAG58384.1|AE005553_6 (AE005553) acetyl CoA carboxylase, biotin carboxylase subunit [Escherichia coli O157:H7 EDL933] Length = 449 Score = 224 bits (570), Expect = 1e-57 Identities = 50/343 (14%), Positives = 104/343 (29%), Gaps = 22/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HE 84 + + +R ++ L + + + + + D H+ L + P Sbjct: 1 MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + I P +G L E+ + + + F+G DK Sbjct: 61 LNIPAIISAAEITGAVAIHPG-YGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 ++ AG+ P + + + + ++G P+ +K + G G+ V + + Sbjct: 120 IAAMKKAGVPCVPGSDGPLGDDMDKN-RAIAKRIGYPVIIKASGGGGGRGMRVVRGDAEL 178 Query: 205 A------IAVDLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A A + V +E+ + R +E VL + E Sbjct: 179 AQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNXIYLAERD--CSMQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E I PE+ I +A +G G + E E+N Sbjct: 237 QKVVEE-----APAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF-ENGEFYFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P +G+ R+ + Sbjct: 291 TRIQVEH----PVTEMITGVDLIKEQLRIAAGQPLSIKQEEVH 329 >gb|AAA23748.1| (M79446) biotin carboxylase [Escherichia coli] Length = 449 Score = 223 bits (569), Expect = 2e-57 Identities = 51/343 (14%), Positives = 105/343 (29%), Gaps = 22/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HE 84 + + +R ++ L + + + + + D H+ L + P Sbjct: 1 MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + I P +G L E+ + + + F+G DK Sbjct: 61 LNIPAIISAAEITGAVAIHPG-YGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 ++ AG+ P + + + + ++G P+ +K + G G+ V + + Sbjct: 120 IAAMKKAGVPCVPGSDGPLGDDMDKN-RAIAKRIGYPVIIKASGGGGGRGMRVVRGDAEL 178 Query: 205 A------IAVDLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A A + V +E+ + R +E VL + A E Sbjct: 179 AQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERD--CSMQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E I PE+ I +A +G G + E E+N Sbjct: 237 QKVVEE-----APAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF-ENGEFYFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P +G+ R+ + Sbjct: 291 TRIQVEH----PVTEMITGVDLIKEQMRIAAGQPLSIKQEEVH 329 >gb|AAC69197.1| (AF097728) pyruvate carboxylase [Aspergillus terreus] Length = 1193 Score = 223 bits (569), Expect = 2e-57 Identities = 48/338 (14%), Positives = 103/338 (30%), Gaps = 26/338 (7%) Query: 15 AEHEVSLQSAKN-IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSA 73 H + SA + +R ++ + + + + + H A Sbjct: 29 VHHRLRANSAIMQFQKILVANRGEIPIRIFRTAHELSLQTVAIFSHEDRLSMHRQKADEA 88 Query: 74 TSLAQ----VPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVG 129 + P + V +I P +G L E+ + A + FVG Sbjct: 89 YMIGHRGQYTPVGAYLAADEIVKIALEHGVHLIHPG-YGFLSENADFARKVEKAGMVFVG 147 Query: 130 SDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQ 189 + DK ++L + + P G P+ +K A Sbjct: 148 PTPDTIDSLGDKVSARQLAIRCNVPVVPGTEGPV--ERYEEVKAFTDTYGFPIIIKAAFG 205 Query: 190 GSSVGVSKVTSEEQYAIAVDLA------FEFDHKVIVEQGIK-GREIECAVLGNDNPQAS 242 G G+ V ++ + + A + V VE+ + + IE +LG+++ Sbjct: 206 GGGRGMRVVRNQADLRDSFERATSEARSAFGNGTVFVERFLDKPKHIEVQLLGDNHGNVV 265 Query: 243 TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD 302 E K ++ V + ++ D+I + AV+ +++ + Sbjct: 266 HLFERD--CSVQRRHQKVVE-----VAPAKDLPTDVRDRILSDAVKLAKSVNYRNAGTAE 318 Query: 303 VFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYT 340 + +N EIN + + +G+ Sbjct: 319 FLVDQQNRHYFIEINPRIQVEHT----ITEEITGIDIV 352 >emb|CAC19838.1| (AJ009972) pyruvate carboxylase [Aspergillus niger] Length = 1192 Score = 223 bits (568), Expect = 2e-57 Identities = 47/330 (14%), Positives = 103/330 (30%), Gaps = 26/330 (7%) Query: 23 SAKN-IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ--- 78 SA + +R ++ + + + + Y H A + + Sbjct: 36 SAIMQFQKILVANRGEIPIRIFRTAHELSLQTVAVYSHEDHLSMHRQKADEAYMIGKRGQ 95 Query: 79 -VPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAA 137 P + + V +I P +G L E+ + + + FVG + Sbjct: 96 YTPVGAYLAIDEIVKIALEHGVHLIHPG-YGFLSENAEFARKVEQSGMVFVGPTPQTIES 154 Query: 138 CMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSK 197 DK ++L + + P G P+ +K A G G+ Sbjct: 155 LGDKVSARQLAIRCDVPVVPGTPGPV--ERYEEVKAFTDTYGFPIIIKAAFGGGGRGMRV 212 Query: 198 VTSEEQYAIAVDLA------FEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLT 250 V + + + + A + V VE+ + + IE +LG+++ E Sbjct: 213 VRDQAELRDSFERATSEARSAFGNGTVFVERFLDRPKHIEVQLLGDNHGNVVHLFERD-- 270 Query: 251 SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENE 310 K ++ + + ++ D+I A AV+ +++ + + +N Sbjct: 271 CSVQRRHQKVVE-----IAPAKDLPADVRDRILADAVKLAKSVNYRNAGTAEFLVDQQNR 325 Query: 311 VVINEINTLPGFTNISMYPKLWQASGLGYT 340 EIN + + +G+ Sbjct: 326 YYFIEINPRIQVEHT----ITEEITGIDIV 351 >ref|NP_047031.1| (NC_001905) PCACA; L549.5 [Leishmania major] pir||T02793 propionyl CoA carboxylase (alpha chain) PCACA [imported] - Leishmania major (strain Friedlin) gb|AAC24617.1| (AE001274) PCACA; L549.5 [Leishmania major] Length = 665 Score = 223 bits (568), Expect = 2e-57 Identities = 55/341 (16%), Positives = 111/341 (32%), Gaps = 22/341 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA-QVPGKHEH 85 + +R ++ + + + + Y + H+ + + + Sbjct: 6 FDKVLVANRGEIACRVMATCQRLGIKTVAVYSTADEQAKHVKVADEGVCIGPPASVESYL 65 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + + + P +G L E+G Q L N+ FVG D + A DK +K Sbjct: 66 CIDKIVDACKKTGAQAVHPG-YGFLSENGEFQAALHKNNIIFVGPDAHSIEAMGDKIESK 124 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 RL AG+ P + + ++G P+ +K + G G+ ++ Q Sbjct: 125 RLAHSAGVTCIPGFIGEVK--THEDVLKFAREVGYPVMIKASGGGGGKGMRVAYNDSQCV 182 Query: 206 IAVD------LAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 D A K++VE+ I R IE V+ + E + Sbjct: 183 EYYDMCREEAKAAFNSDKMLVEKFIENPRHIEIQVIADRRGNTLYLPER--ECSIQRRNQ 240 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K I+E + + + AV + + V+ + P+ + E+NT Sbjct: 241 KVIEE-----APSVLLDAKTRKAMGEEAVAMARAVQYVSAGTVENVVNPQKQFYFLEMNT 295 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 + P + +G+ + + R D+ Sbjct: 296 RLQVEH----PITEEITGIDLVEQMLRAAADLPLSITQDDI 332 >sp|Q9ZBR9|DDL_STRCO D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||T35644 D-alanine-D-alanine ligase - Streptomyces coelicolor emb|CAA22403.1| (AL034447) D-alanine-D-alanine ligase [Streptomyces coelicolor A3(2)] Length = 389 Score = 222 bits (567), Expect = 3e-57 Identities = 129/368 (35%), Positives = 204/368 (55%), Gaps = 18/368 (4%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVS--DASNYLLN 60 K RV +VFGG+S+EH +S+ +A ++ AID++R+DV+ +GI + G+W ++ + + Sbjct: 20 KPRVAVVFGGRSSEHGISVVTAGAVLAAIDRTRYDVLPIGITRDGRWALTADEPERMAIT 79 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNG-----QPLPTVDVIFPIVHGTLGEDGS 115 + +T + + + L VDV+FP++HG GEDG+ Sbjct: 80 ERRTPDVEELAESTEGGVLLPVDPANREVVYSEPGSVPKALGEVDVVFPVLHGPYGEDGT 139 Query: 116 LQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANR------HNI 169 LQG+L ++ +P+VG+ VLASA DK+ K + GL + P+ + Sbjct: 140 LQGLLELSGVPYVGAGVLASAVGQDKEYMKAVFTSYGLKVGPYAVIRPREWEQDRSGARK 199 Query: 170 SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREI 229 + + G PLFVKPA GSS+G++KV A++ A D K++VE ++GREI Sbjct: 200 KIVDFAGEHGWPLFVKPARAGSSIGITKVDDLAGLDEAIEEARRHDPKILVEAALRGREI 259 Query: 230 ECAVLGNDNPQASTCGEIVLT---SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIA 286 EC VL ++ ++ + +Y ++ KYID V PA + E +++ +A Sbjct: 260 ECGVLEFEDGPRASVPAEIPPPSEHAYYDFEAKYIDSTPGIV--PAPLTAEETAEVQRLA 317 Query: 287 VQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRL 346 V A+ C G+ R D FLT ++E VINEINT+PGFT ISMYP++WQASG+ Y +L+ RL Sbjct: 318 VAAFDAASCEGLVRADFFLTEDDEFVINEINTMPGFTPISMYPQMWQASGVSYPELVDRL 377 Query: 347 IELALERH 354 ++ AL R Sbjct: 378 VQAALRRP 385 >gb|AAG10491.1|AF279106_53 (AF279106) predicted acetyl-CoA carboxylase, biotin carboxylase [uncultured proteobacterium EBAC31A08] Length = 447 Score = 222 bits (567), Expect = 3e-57 Identities = 59/343 (17%), Positives = 110/343 (31%), Gaps = 22/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV-PGKHE 84 + +R ++ L I + + S Y D H+ + P + Sbjct: 1 MSYKVLIANRGEIALRAIRACKELGIKTVSVYSEADKDLKHLRFSDETVCIGPASPTQSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + L + + I+P +G L ED + M + F+G DK Sbjct: 61 LNIPAILSAAELTSANAIYPG-YGFLAEDHNFAEMCEKSGFKFIGPTSETIQKMGDKITA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K L +G+ I P + N F ++ +G P+ +K G G+ V EE Sbjct: 120 KTLAEKSGIQIVPGYKDEIPSD-NDEFKKIARDIGYPIMIKATAGGGGRGMRVVEREEDL 178 Query: 205 AIAVDLAF------EFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 ++ + + +E+ I R IE ++G+ +A G Sbjct: 179 IGHAEITMQEAKNGFGNETIYLEKFIGNPRHIEVQIVGDGKGKAIHLGTRD--CSMQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E I E +K V + + G+ ++ +N+ E+N Sbjct: 237 QKIIEE-----APALNINQEALNKTLIACVNLCEEINYEGVGTIEFLY-EDNQFYFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P +G R+ D+ Sbjct: 291 TRIQVEH----PVTEMITGFDLVKAQLRIALEMPIELNQDDIN 329 >gb|AAD25800.1|AC006550_8 (AC006550) Identical to gb|U12536 3-methylcrotonyl-CoA carboxylase precursor protein from Arabidopsis thaliana. ESTs gb|H35836, gb|AA651295 and gb|AA721862 come from this gene Length = 730 Score = 222 bits (566), Expect = 3e-57 Identities = 52/343 (15%), Positives = 109/343 (31%), Gaps = 27/343 (7%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HEH 85 I + +R ++ + + + + Y D H+ A + + Sbjct: 38 IEKILVANRGEIACRIMRTAKRLGIQTVAVYSDADRDSLHVKSADEAVRIGPPSARLSYL 97 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + I P +G L E + + L F+G A DK +K Sbjct: 98 SGVTIMEAAARTGAQAIHPG-YGFLSESSDFAQLCEDSGLTFIGPPASAIRDMGDKSASK 156 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 R++ AG+ + P + K+G P+ +KP + G G+ V S + +A Sbjct: 157 RIMGAAGVPLVPGYHGH--EQDIDHMKSEAEKIGYPIIIKPTHGGGGKGMRIVQSGKDFA 214 Query: 206 IAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 + A + +++E+ I + R IE V+ + E ++ D + Sbjct: 215 DSFLGAQREAAASFGVNTILLEKYITRPRHIEVQVVSREISCCFFFHERLIFGDKHGNVL 274 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEIN 317 + D + + + + I +A +G V+ + ++ E+N Sbjct: 275 HLYERDCS-----------VQRRHQKIIEEAPAAVGYYNAGTVEFIVDTESDQFYFMEMN 323 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P G + R+ + Sbjct: 324 TRLQVEH----PVTEMIVGQDLVEWQIRVANGEPLPLSQSEVP 362 >ref|NP_106581.1| (NC_002678) 3-methylcrotonyl-CoA carboxylase biotin-containing subunit [Mesorhizobium loti] dbj|BAB52367.1| (AP003008) 3-methylcrotonyl-CoA carboxylase biotin-containing subunit [Mesorhizobium loti] Length = 653 Score = 222 bits (566), Expect = 4e-57 Identities = 61/350 (17%), Positives = 121/350 (34%), Gaps = 27/350 (7%) Query: 24 AKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-K 82 K + +R ++ I + ++ Y H+A+ A + P + Sbjct: 2 GKLFSKILIANRGEIACRVIRTARRLGMATVGVYSDADAKSLHVAMAGEAVHIGASPVAE 61 Query: 83 HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKD 142 + + I P +G L E + A L F+G + A KD Sbjct: 62 SYLKADRIIDAALKTGAQAIHPG-YGFLSEAPDFVERVEAAGLVFIGPSASSIRAMGLKD 120 Query: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEE 202 KRL+ G+ + P + ++ + ++G P+ +K G G+ +V + Sbjct: 121 AAKRLMEITGVPVVPGYHGEAQDPALLASRAI--EIGFPVLIKARAGGGGKGMRRVETAG 178 Query: 203 QYAIAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYA 255 ++A A+ A D KV++E+ ++ R IE V G+++ E Sbjct: 179 EFADALASAQREAKASFGDDKVLIEKYVEKPRHIEVQVFGDNHGNGVHLFERD--CSAQR 236 Query: 256 YDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE-----NE 310 K I+E + PE+ + AV+A + + +G ++ + + Sbjct: 237 RHQKVIEE-----APAPGMTPEMRVAMTHAAVKAAKAINYSGAGTIEFIVDASEGLRADR 291 Query: 311 VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 E+NT + P +G + R+ L D+ Sbjct: 292 FWFMEMNTRLQVEH----PMTEMVTGQDLVEWQIRVAAGELLPLTQDDIH 337 >ref|NP_376481.1| (NC_003106) 513aa long hypothetical biotin carboxylase [Sulfolobus tokodaii] dbj|BAB65590.1| (AP000983) 513aa long hypothetical biotin carboxylase [Sulfolobus tokodaii] Length = 513 Score = 222 bits (566), Expect = 4e-57 Identities = 53/344 (15%), Positives = 110/344 (31%), Gaps = 23/344 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHEH 85 + +R ++ + + + + + Y H+ A + P + Sbjct: 4 FGKVLVANRGEIAVRVMKAIKEMGMKAVAVYSEADKYALHVKYADEAYYIGPPPALESYL 63 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + + D + P +G L E+ + A L ++G V A A K K Sbjct: 64 NIQAIIDAAEKAHADAVHPG-YGFLSENADFAEAVVKAGLTWIGPPVDAMRAIKSKLDGK 122 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 R+ + AG+ I+P ++ K+G P+ VK A G G+++V + +Q Sbjct: 123 RIAKQAGVPISPGSDGPV--DSLDEALKLAEKIGYPIMVKAAFGGGGTGITRVDNPDQLV 180 Query: 206 IAVD------LAFEFDHKVIVEQ-GIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 + + +E+ + R IE ++G+ E + Sbjct: 181 EVWERNKRLAYQAFGKADLYIEKAAVNPRHIEFQLIGDKYGNYVVAWER--ECTIQRRNQ 238 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVD-VFLTPENEVVINEIN 317 K I+E A+ E +++ ++ Q + + + VF E E+N Sbjct: 239 KLIEE-----APSPALKMEERERMFEPIIKFGQIIHYYTLGTFETVFSDTTREFYFLELN 293 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALK 361 + P + L + + K Sbjct: 294 KRLQVEH----PITEMIFRIDLVKLQINIAAGEPLPFTQEELNK 333 >pdb|1DV2|A Chain A, The Structure Of Biotin Carboxylase, Mutant E288k, Complexed With Atp pdb|1DV2|B Chain B, The Structure Of Biotin Carboxylase, Mutant E288k, Complexed With Atp Length = 452 Score = 222 bits (565), Expect = 6e-57 Identities = 50/343 (14%), Positives = 105/343 (30%), Gaps = 22/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HE 84 + + +R ++ L + + + + + D H+ L + P Sbjct: 4 MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSY 63 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + I P +G L E+ + + + F+G DK Sbjct: 64 LNIPAIISAAEITGAVAIHPG-YGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSA 122 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 ++ AG+ P + + + + ++G P+ +K + G G+ V + + Sbjct: 123 IAAMKKAGVPCVPGSDGPLGDDMDKN-RAIAKRIGYPVIIKASGGGGGRGMRVVRGDAEL 181 Query: 205 A------IAVDLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A A + V +E+ + R +E VL + A E Sbjct: 182 AQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERD--CSMQRRH 239 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E I PE+ I +A +G G + E ++N Sbjct: 240 QKVVEE-----APAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF-ENGEFYFIKMN 293 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 T + P +G+ R+ + Sbjct: 294 TRIQVEH----PVTEMITGVDLIKEQLRIAAGQPLSIKQEEVH 332 >ref|NP_464882.1| (NC_003210) acetyl-CoA carboxylase subunit (biotin carboxylase subunit) [Listeria monocytogenes EGD-e] emb|CAC99435.1| (AL591978) acetyl-CoA carboxylase subunit (biotin carboxylase subunit) [Listeria monocytogenes] Length = 454 Score = 221 bits (562), Expect = 1e-56 Identities = 66/342 (19%), Positives = 119/342 (34%), Gaps = 23/342 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKH-E 84 I + +R ++ + I + V + Y + HI L A + K Sbjct: 1 MIKKVLVANRGEIAVRIIRAAKELGVETVAIYSEADREALHIQLADEAYCVGPAATKDSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + L D I P +G L E+ + N+ F+G A + KDV Sbjct: 61 LNMSNIISLAVLTNCDAIHPG-YGFLAENADFAELCEDCNITFIGPSASAISQMGTKDVA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + +R AG+ I P A+ ++ K+G P+ +K G G+ +EE+ Sbjct: 120 RETMRKAGVPIVPGSQGIVAD--VEDGKKIAKKIGYPVIIKATAGGGGKGIRVAENEEKL 177 Query: 205 AIAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + A D V +E+ I R +E VL +++ GE Sbjct: 178 ISGIHTTQQEAEAAFGDPGVYLEKYIQDFRHVEIQVLADNHGNVIHLGERD--CSIQRRL 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEI 316 K I+E AI + K+ AV+A + + +G ++ EN E+ Sbjct: 236 QKLIEE-----SPSPAIDEKTRQKMGKAAVKAAKAVNYSGAGTIEFIYDHHENNFYFMEM 290 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 NT + P +G+ + + + Sbjct: 291 NTRIQVEH----PVTELVTGIDLVKQQFLVASGEELQIKQAD 328 >ref|NP_360596.1| (NC_003103) propionyl-CoA carboxylase alpha chain precursor [EC:6.4.1.3] [Rickettsia conorii] gb|AAL03497.1| (AE008649) propionyl-CoA carboxylase alpha chain precursor [EC:6.4.1.3] [Rickettsia conorii] Length = 665 Score = 221 bits (562), Expect = 1e-56 Identities = 51/340 (15%), Positives = 117/340 (34%), Gaps = 22/340 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHEH 85 + +R ++ + I + + + Y + ++ A + P + Sbjct: 6 FDKILIANRSEIAVRIIRTLKKMGIKSVAVYSEADTNSMYVQHADEAYYIGDSPATESYL 65 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + + + + P +G L E+ + +L+ + +G DK K Sbjct: 66 SIKNIISAIRESGASAVHPG-YGFLSENPNFANILKREGVVLIGPSAGTIKKMGDKIEAK 124 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 ++ +AG++ P T ++ ++G P+ VK A G G+ V + + A Sbjct: 125 KIAIEAGVSTVPGYMGTI--NDVKQAIDIAKEIGFPVIVKAAAGGGGRGMRVVNNPAEMA 182 Query: 206 IAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A + A D ++ +E+ I+ R IE ++ + + GE + Sbjct: 183 NAFESAKLEAANSFSDDRLFIEKLIQTPRHIEIQLIADQYGNSVCLGER--ECSIQRHHQ 240 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K I+E + I +I ++ + Q +G V+ + E+NT Sbjct: 241 KVIEE-----APSSFITEDIRQEMYRQVISLSQKVGYYSAGTVEFIVDSNKNFYFLEMNT 295 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 + P +G+ + + ++ D+ Sbjct: 296 RLQVEH----PVTELITGIDIVEEMIQIAAGEKLSFTQDD 331 >ref|NP_420982.1| (NC_002696) propionyl-CoA carboxylase, alpha subunit [Caulobacter crescentus] gb|AAK24150.1| (AE005890) propionyl-CoA carboxylase, alpha subunit [Caulobacter crescentus] Length = 669 Score = 221 bits (562), Expect = 1e-56 Identities = 50/341 (14%), Positives = 106/341 (30%), Gaps = 22/341 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEH 85 + +R ++ + I + + Y + + + P + Sbjct: 1 MFSKILIANRGEIAVRVIKTCRRLGIKTVVVYSDADAGSLAVEMADETVHIGASPANQSY 60 Query: 86 QL-IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + P G L E+ + F+G + A +A DK + Sbjct: 61 LVADKIIAACKQTGAQAVHPGF-GFLSENAGFAQRCADEGIVFIGPNPGAISAMGDKIES 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K+ + AG++ P A+ ++ ++G P+ +K + G G+ + + Sbjct: 120 KKFAQAAGVSCVPGHIGEIADTAE--AVKISEEIGYPVMIKASAGGGGKGIRVAWTRKDV 177 Query: 205 AI------AVDLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A D ++ +E+ I+ R IE VLG+ + E + Sbjct: 178 EEGFPAVRAEAKASFGDDRIFIEKFIESPRHIEIQVLGDKHGNVVHLFER--ECSIQRRN 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E + + + A AV + + V+ + E+N Sbjct: 236 QKVIEE-----APSPLLDEATRNAMGAQAVALAKAVNYDSAGTVEFVAGQDKSFFFLEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 T + P +GL + + R + Sbjct: 291 TRLQVEH----PVTELITGLDLVEQMIRSAYGEKMAFGQSD 327 >ref|NP_470730.1| (NC_003212) acetyl-CoA carboxylase subunit (biotin carboxylase subunit) [Listeria innocua] emb|CAC96625.1| (AL596168) acetyl-CoA carboxylase subunit (biotin carboxylase subunit) [Listeria innocua] Length = 454 Score = 220 bits (561), Expect = 1e-56 Identities = 66/342 (19%), Positives = 119/342 (34%), Gaps = 23/342 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKH-E 84 I + +R ++ + I + V + Y + HI L A + K Sbjct: 1 MIKKVLVANRGEIAVRIIRAAKELGVETVAIYSEADKEALHIQLADEAYCVGPAATKDSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + L D I P +G L E+ + N+ F+G A + KDV Sbjct: 61 LNMSNIISLAVLTNCDAIHPG-YGFLAENADFAELCEDCNITFIGPSASAISQMGTKDVA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + +R AG+ I P A+ ++ K+G P+ +K G G+ +EE+ Sbjct: 120 RETMRKAGVPIVPGSQGIVAD--VEDGKKIAKKIGYPVIIKATAGGGGKGIRVAENEEKL 177 Query: 205 AIAVD------LAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + A D V +E+ I R +E VL +++ GE Sbjct: 178 ISGIQTTQQEAEAAFGDPGVYLEKYIQDFRHVEIQVLADNHGNVIHLGERD--CSIQRRL 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLT-PENEVVINEI 316 K I+E AI + K+ AV+A + + +G ++ EN E+ Sbjct: 236 QKLIEE-----SPSPAIDEKTRQKMGKAAVKAAKAVNYSGAGTIEFIFDHHENNFYFMEM 290 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 NT + P +G+ + + + Sbjct: 291 NTRIQVEH----PVTELVTGIDLVKQQFLVASGEELKIKQAD 328 >ref|NP_220985.1| (NC_000963) PROPIONYL-COA CARBOXYLASE ALPHA CHAIN PRECURSOR (pccA) [Rickettsia prowazekii] pir||C71667 propionyl-COA carboxylase alpha chain precursor (pccA) RP618 - Rickettsia prowazekii emb|CAA15061.1| (AJ235272) PROPIONYL-COA CARBOXYLASE ALPHA CHAIN PRECURSOR (pccA) [Rickettsia prowazekii] Length = 665 Score = 220 bits (560), Expect = 2e-56 Identities = 50/341 (14%), Positives = 115/341 (33%), Gaps = 22/341 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHEH 85 + +R ++ + I + + + Y + ++ A + P Sbjct: 6 FDKILIANRSEIAVRIIRTLKKMGIGSVAVYSEADTNSMYVQHADEAYYIGDSPATASYL 65 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + + + + P +G L E+ + +L+ + +G DK K Sbjct: 66 SVKNLISAIRESGASAVHPG-YGFLSENPNFANILKREGVVLIGPSAGTIKKMGDKIEAK 124 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 ++ +AG++ P T + ++ ++G P+ VK G G+ V + + A Sbjct: 125 KIAIEAGVSTVPGYMGTIKD--VKQAIDIAKEIGFPVIVKATAGGGGRGMRVVNNPAEMA 182 Query: 206 IAVDLAF------EFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A + A D ++ +E+ I+ R IE ++ + + GE + Sbjct: 183 NAFESAKLEAANSFSDDRLFIEKLIQTPRHIEIQLIADQYGNSVCLGER--ECSIQRHHQ 240 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K I+E + I I ++ + Q +G V+ + E+NT Sbjct: 241 KVIEE-----APSSFITENIRHEMYRQVISLSQKVGYYSAGTVEFIVDSNKNFYFLEMNT 295 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 + P +G+ + + ++ D+ Sbjct: 296 RLQVEH----PVTELITGIDIVEEMIKIAAGEKLSFTQDDI 332 >ref|NP_214146.1| (NC_000918) biotin carboxylase [Aquifex aeolicus] pir||C70444 biotin carboxylase - Aquifex aeolicus gb|AAC07527.1| (AE000749) biotin carboxylase [Aquifex aeolicus] Length = 444 Score = 220 bits (560), Expect = 2e-56 Identities = 53/347 (15%), Positives = 115/347 (32%), Gaps = 23/347 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV-PGKHE 84 + +R ++ + I + + + Y + H+ L A + P K Sbjct: 1 MFKRVLIANRGEIAVRAIRACRELGLKTVAIYSEADKNSLHVELADEAICIGPPDPSKSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + D ++P +G L E+ ++ + F+G A DK + Sbjct: 61 LDIPRIMSALEVSKADAVYPG-YGFLSENPKFAEIVEKSGAKFIGPRSEVLAKIGDKVLA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K++ ++ GL + P ++ SK+G P+ +K A G G+ + E++ Sbjct: 120 KKVAKEVGLPLVPGSDEPLEF---SEAVKLASKIGYPVVIKAAAGGGGRGIRIIRDEKEL 176 Query: 205 AIAV------DLAFEFDHKVIVEQG-IKGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + D ++ +E+ I + IE V+ +++ GE Sbjct: 177 REKFPLAKKEAESAFGDGRLYIEKYVINPKHIEFQVIADEHGNVYVLGER--ECSIQRRH 234 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E +++ E +I + + LG V+ + E E+N Sbjct: 235 QKLIEE-----APSVSVSEEKRKEISEKVAEFCKRLGYTSAGTVEFLMDEEGNFYFMEMN 289 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALKTTM 364 + P +G+ L + + Sbjct: 290 GRIQVEH----PVTEMVTGVDIVKLQLIAAMGEEIKLEKVETNGFAI 332 >ref|NP_440997.1| (NC_000911) D-alanine:D-alanine ligase-related protein [Synechocystis sp. PCC 6803] sp|P73632|DDL_SYNY3 D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) pir||S77119 D-alanine--D-alanine ligase (EC 6.3.2.4) A - Synechocystis sp. (strain PCC 6803) dbj|BAA17677.1| (D90908) D-alanine:D-alanine ligase-related protein [Synechocystis sp. PCC 6803] Length = 354 Score = 220 bits (560), Expect = 2e-56 Identities = 141/363 (38%), Positives = 209/363 (56%), Gaps = 27/363 (7%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAI----DKSRFDVVLLGIDKQGQWHVSDASNYLL 59 +RVG++FGG S EHEVS++SA+ I A+ +++++ V I K G W D S Sbjct: 1 MRVGLLFGGCSGEHEVSIKSAQAIAKALASDDNQTKYQVSPFYIQKNGVWLGPDVSQ--- 57 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 + P + + V FPI+HG GEDG++QG+ Sbjct: 58 --------QVLDQGVPWGDQPVTAGQRWQFPPEAARME---VWFPILHGPNGEDGTVQGL 106 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRH------NISFAE 173 + +P+VGS VL S MDK K + AGL ++ + R + Sbjct: 107 FSLMQVPYVGSGVLGSCVGMDKLAMKMVFERAGLPQVNYMGVERGEIWSNPCVFPALCEK 166 Query: 174 VESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGI-KGREIECA 232 +E+++G P FVKPAN GSSVG++KV + + A+D A +D ++IVE G+ RE+ECA Sbjct: 167 IEAQVGYPCFVKPANLGSSVGIAKVRNRSELEAALDNAASYDRRIIVEAGLTDIREVECA 226 Query: 233 VLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 VLGN+NPQAS GEI SDFY Y+TKY D ++ +PA + + ++I+ +A+QA++ Sbjct: 227 VLGNENPQASVVGEITYDSDFYDYETKYTDGRS-QMHIPANLPKAVVNQIQTMAIQAFKA 285 Query: 293 LGCAGMARVDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 + AG+ R+D F P ++VINEINTLPGFT SMYP+LW+ASG+ + L+ RL++LAL Sbjct: 286 VDAAGLGRLDFFYQPTTGQIVINEINTLPGFTAFSMYPELWRASGVEFPSLVDRLLQLAL 345 Query: 352 ERH 354 + H Sbjct: 346 DYH 348 >gb|AAD37851.1|AF126429_1 (AF126429) JadJ [Streptomyces venezuelae] Length = 584 Score = 219 bits (559), Expect = 2e-56 Identities = 48/345 (13%), Positives = 103/345 (28%), Gaps = 22/345 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ-VPGKHEH 85 + + +R ++ + + + Y D H+ A +L P Sbjct: 1 MRKVLIANRGEIAVRVARACRDAGIGSVAVYAEPDRDALHVRAADEAFALGGDTPATSYL 60 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + D + P +G L E+ + A L ++G A DK + Sbjct: 61 DMAKVLQAAADSGADAVHPG-YGFLSENAEFAQAVLDAGLTWIGPPPQAIRDLGDKVAAR 119 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 + + AG + + GLP+ +K A G G+ + E+ Sbjct: 120 HIAQRAGAPLVAGT--PDPVSGADEVVAFAEEHGLPIAIKAAFGGGGRGLKVARTLEEVP 177 Query: 206 IAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 D A + VE+ + R +E L + + Sbjct: 178 ELYDSAVREAVAAFGRGECFVERYLDKPRHVETQCLADQHGNVVVVSTRD--CSLQRRHQ 235 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K ++E ++ N ++ A + + G G V+ + + + E+NT Sbjct: 236 KLVEE-----APAPFLSEAQNAELYAASKAILKEAGYVGAGTVEFLVGTDGTISFLEVNT 290 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALKTT 363 + P + +G+ + R+ + + + Sbjct: 291 RLQVEH----PVTEEVTGIDLVREMFRIADGEELGYGDPEIRGHS 331 >ref|NP_282436.1| (NC_002163) biotin carboxylase [Campylobacter jejuni] pir||G81271 biotin carboxylase (EC 6.3.4.14) Cj1290c [imported] - Campylobacter jejuni (strain NCTC 11168) emb|CAB73717.1| (AL139078) biotin carboxylase [Campylobacter jejuni] Length = 443 Score = 219 bits (558), Expect = 4e-56 Identities = 57/348 (16%), Positives = 119/348 (33%), Gaps = 21/348 (6%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHE 84 I + +R ++ L + + Y D ++ ++ + + Sbjct: 1 MEIKSILIANRGEIALRALRTIKEMGKKAICVYSEADKDALYLKYADASICIGKARSSES 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + I A +G L E+ + + N+ F+G V A DK Sbjct: 61 YLNIPAIIAAAEIAEADAIFPGYGFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKA 120 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K++++ AG+ + P A + ++ ++G P+ +K A G G+ V +E+ Sbjct: 121 KQVMQRAGVPVIPGSDGALAGA--EAAKKLAKEIGYPVILKAAAGGGGRGMRVVENEKDL 178 Query: 205 AIAVDLA------FEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A D + +E+ I R IE V+G+ GE Sbjct: 179 EKAYWSAESEAMTAFGDGTMYMEKYIQNPRHIEVQVIGDSFGNVIHVGERD--CSMQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E + + ++ A++A + +G G + + + E+N Sbjct: 237 QKLIEE-----SPAILLDEKTRTRLHETAIKAAKAIGYEGAGTFEFLVDKNLDFYFIEMN 291 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIEL-ALERHAADNALKTTM 364 T + SG+ + + ++ E AL + ++ Sbjct: 292 TRLQVEHC----VSEMVSGIDIIEQMIKVAEGYALPSQESIKLNGHSI 335 >ref|NP_296522.1| (NC_002620) UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase [Chlamydia muridarum] pir||B81737 UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase TC0143 [imported] - Chlamydia muridarum (strain Nigg) gb|AAF39021.1| (AE002281) UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase [Chlamydia muridarum] Length = 833 Score = 219 bits (557), Expect = 4e-56 Identities = 100/370 (27%), Positives = 172/370 (46%), Gaps = 30/370 (8%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +KL +G++ GG+S EH++S+ SA+NI + S ++V I ++G W + Sbjct: 476 KKLSLGLICGGRSCEHDISILSAQNIAKYLSHSFYEVQYFLITREGLWKTGSSLELSEE- 534 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 + D + L VDVI PI+HG GEDG++QG L Sbjct: 535 ---------------------TGKTIFDPEIAGKLSKVDVILPILHGPYGEDGAMQGFLE 573 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT---RANRHNISFAEVESKL 178 P+ G ++ +A M+K +TKR + D G+ + P++ LT A++++ Sbjct: 574 TIGKPYTGPSLVFAAIGMNKVLTKRFMSDLGIPVVPYLPLTLKGWKQDQEKCLAQIKAAF 633 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQ-GIKGREIECAVLGND 237 P+FVK + GSS+GV +V + A++ AF D V +E+ + REIE + LG+ Sbjct: 634 SFPMFVKSVHLGSSIGVFEVHDTNELRDAINEAFVRDDDVFIEESRLGCREIEVSFLGDG 693 Query: 238 NPQ--ASTCGEIVLTSDFYAYDTKY--IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 + + E F Y KY A++V ++ E +++ +A + Y+ L Sbjct: 694 SGVFFVAGMHERRGRGGFIDYQEKYGLSGRASAQIVFDVDLSKETREQLLGVAEKIYRLL 753 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G R+D F+ E ++EIN +PG T S + + G ++ +L+ L+R Sbjct: 754 QGKGSCRIDFFVDNEGSFWLSEINPIPGMTTASPFLAAFVRKGWNREQIVHQLVIDGLQR 813 Query: 354 HAADNALKTT 363 L +T Sbjct: 814 FDQRQRLIST 823 >ref|NP_249185.1| (NC_002516) probable acyl-CoA carboxylase subunit [Pseudomonas aeruginosa] pir||A83585 probable acyl-CoA carboxylase subunit PA0494 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG03883.1|AE004486_12 (AE004486) probable acyl-CoA carboxylase subunit [Pseudomonas aeruginosa] Length = 458 Score = 218 bits (556), Expect = 6e-56 Identities = 56/341 (16%), Positives = 104/341 (30%), Gaps = 24/341 (7%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVP-GKHEHQL 87 + +R ++ + I + + D L + + + Sbjct: 7 KLLVANRGEIAVRIIRAAQALGIPTVAVCSEADRDSLAARLADEVRLIGPARADRSYLDI 66 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 D I P +G L E+ + ++ A L FVG + DK +R Sbjct: 67 EAILMAARETGADSIHPG-YGFLSENPAFAEAVQAAGLVFVGPEAQTIRRMGDKAEARRT 125 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 AG+ + P + + ++G PL VK + G G+ ++ Sbjct: 126 AMAAGVPVVPGSPGELGD--LDAALACAEEVGYPLLVKASAGGGGRGIRIAHDADELRRE 183 Query: 208 V------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 A V +E+ I + R IE +LG+ +A E K Sbjct: 184 FPIAQREAQAAFGSPAVYLERFIRQARHIEVQILGDG-ERAVHLFER--ECSLQRRRQKV 240 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTP-ENEVVINEINTL 319 +E AA+ + AV+ Q+LG G ++ E E+NT Sbjct: 241 FEE-----APSAALDGAQRQALCESAVRLAQSLGYRGAGTLEYLFDAHSGEFFFIEMNTR 295 Query: 320 PGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + P +G+ + R+ ++ Sbjct: 296 IQVEH----PVSEMVTGIDLVQAMLRIAAGEALPWRQEDIR 332 >emb|CAC22142.1| (AL512902) putative acyl-CoA carboxylase complex A subunit (fragment) [Streptomyces coelicolor] Length = 492 Score = 218 bits (556), Expect = 6e-56 Identities = 47/337 (13%), Positives = 103/337 (29%), Gaps = 22/337 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ-VPGKHEH 85 + + +R ++ + ++ + Y D H+ A +L P Sbjct: 1 MRKVLIANRGEIAVRVARACRDAGIASVAVYADPDRDALHVRAADEAFALGGDTPATSYL 60 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + D I P +G L E+ + A L ++G A DK + Sbjct: 61 DIAKVLKAARESGADAIHPG-YGFLSENAEFAQAVLDAGLIWIGPPPHAIRDLGDKVAAR 119 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 + + AG + + GLP+ +K A G G+ + E+ Sbjct: 120 HIAQRAGAPLVAGT--PDPVSGADEVVAFAKEHGLPIAIKAAFGGGGRGLKVARTLEEVP 177 Query: 206 IAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 D A + VE+ + R +E L + + Sbjct: 178 ELYDSAVREAVAAFGRGECFVERYLDKPRHVETQCLADTHGNVVVVSTRD--CSLQRRHQ 235 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K ++E ++ +++ + + + G G V+ + + + E+NT Sbjct: 236 KLVEE-----APAPFLSEAQTEQLYSSSKAILKEAGYVGAGTVEFLVGMDGTISFLEVNT 290 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 + P + +G+ + R+ + + Sbjct: 291 RLQVEH----PVTEEVAGIDLVREMFRIADGEELGYD 323 >gb|AAL27442.1|AF430807_7 (AF430807) VanE [Enterococcus faecalis] Length = 352 Score = 218 bits (555), Expect = 7e-56 Identities = 106/354 (29%), Positives = 195/354 (54%), Gaps = 8/354 (2%) Query: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADD 63 V I+FGG S+E+EVSL+SA I+ ++ ++V+ +GI ++G W++ + Sbjct: 2 KTVAIIFGGVSSEYEVSLKSAVAIIKNMESIDYNVMKIGITEEGHWYLFE----GTTDKI 57 Query: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123 + ++ + +N + + D++FP++HG GE+G++QG+ + Sbjct: 58 KKDRWFLDES--CEEIVVDFAKKSFVLKNSKKIIKPDILFPVLHGGYGENGAMQGVFELL 115 Query: 124 NLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLF 183 ++P+VG + A+A M+K + + G+ P + + + G PL+ Sbjct: 116 DIPYVGCGIGAAAISMNKIMLHQFAEAIGVKSTPSMIIEKGQDL-QKVDAFAKIHGFPLY 174 Query: 184 VKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 +KP GSS G+SKV + A+D A ++D ++++++ +KG EI C +LGN+ Sbjct: 175 IKPNEAGSSKGISKVERKSDLYKAIDEASKYDSRILIQKEVKGVEIGCGILGNEQLVVGE 234 Query: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 C +I L F+ Y+ KY + A++++PA ++ + + I+ A + Y+ LGC G+AR+D Sbjct: 235 CDQISLVDGFFDYEEKY-NLVTAEILLPAKLSIDKKEDIQMKAKKLYRLLGCKGLARIDF 293 Query: 304 FLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAAD 357 FLT + E+++NEINT+PGFT S +P + G+ Y ++I L+ LA+E H Sbjct: 294 FLTDDGEILLNEINTMPGFTEHSRFPMMMNEIGMDYKEIIENLLVLAVENHEKK 347 >emb|CAC21629.1| (AL512667) putative acyl-CoA carboxylase complex A subunit [Streptomyces coelicolor] Length = 590 Score = 218 bits (555), Expect = 8e-56 Identities = 47/337 (13%), Positives = 103/337 (29%), Gaps = 22/337 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ-VPGKHEH 85 + + +R ++ + ++ + Y D H+ A +L P Sbjct: 1 MRKVLIANRGEIAVRVARACRDAGIASVAVYADPDRDALHVRAADEAFALGGDTPATSYL 60 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + D I P +G L E+ + A L ++G A DK + Sbjct: 61 DIAKVLKAARESGADAIHPG-YGFLSENAEFAQAVLDAGLIWIGPPPHAIRDLGDKVAAR 119 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 + + AG + + GLP+ +K A G G+ + E+ Sbjct: 120 HIAQRAGAPLVAGT--PDPVSGADEVVAFAKEHGLPIAIKAAFGGGGRGLKVARTLEEVP 177 Query: 206 IAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 D A + VE+ + R +E L + + Sbjct: 178 ELYDSAVREAVAAFGRGECFVERYLDKPRHVETQCLADTHGNVVVVSTRD--CSLQRRHQ 235 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K ++E ++ +++ + + + G G V+ + + + E+NT Sbjct: 236 KLVEE-----APAPFLSEAQTEQLYSSSKAILKEAGYVGAGTVEFLVGMDGTISFLEVNT 290 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 + P + +G+ + R+ + + Sbjct: 291 RLQVEH----PVTEEVAGIDLVREMFRIADGEELGYD 323 >sp|Q9PLG1|MUDD_CHLMU MURC/DDL BIFUNCTIONAL ENZYME [INCLUDES: UDP-N-ACETYLMURAMATE--ALANINE LIGASE (UDP-N-ACETYLMURAMOYL-L-ALANINE SYNTHETASE); D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE)] Length = 802 Score = 217 bits (554), Expect = 8e-56 Identities = 100/370 (27%), Positives = 172/370 (46%), Gaps = 30/370 (8%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +KL +G++ GG+S EH++S+ SA+NI + S ++V I ++G W + Sbjct: 445 KKLSLGLICGGRSCEHDISILSAQNIAKYLSHSFYEVQYFLITREGLWKTGSSLELSEE- 503 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 + D + L VDVI PI+HG GEDG++QG L Sbjct: 504 ---------------------TGKTIFDPEIAGKLSKVDVILPILHGPYGEDGAMQGFLE 542 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT---RANRHNISFAEVESKL 178 P+ G ++ +A M+K +TKR + D G+ + P++ LT A++++ Sbjct: 543 TIGKPYTGPSLVFAAIGMNKVLTKRFMSDLGIPVVPYLPLTLKGWKQDQEKCLAQIKAAF 602 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQ-GIKGREIECAVLGND 237 P+FVK + GSS+GV +V + A++ AF D V +E+ + REIE + LG+ Sbjct: 603 SFPMFVKSVHLGSSIGVFEVHDTNELRDAINEAFVRDDDVFIEESRLGCREIEVSFLGDG 662 Query: 238 NPQ--ASTCGEIVLTSDFYAYDTKY--IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 + + E F Y KY A++V ++ E +++ +A + Y+ L Sbjct: 663 SGVFFVAGMHERRGRGGFIDYQEKYGLSGRASAQIVFDVDLSKETREQLLGVAEKIYRLL 722 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G R+D F+ E ++EIN +PG T S + + G ++ +L+ L+R Sbjct: 723 QGKGSCRIDFFVDNEGSFWLSEINPIPGMTTASPFLAAFVRKGWNREQIVHQLVIDGLQR 782 Query: 354 HAADNALKTT 363 L +T Sbjct: 783 FDQRQRLIST 792 >pir||S71009 biotin carboxylase protein A2 - Saccharopolyspora erythraea emb|CAA63311.1| (X92557) biotin carboxylase and biotin carboxyl carrier protein [Saccharopolyspora erythraea] Length = 591 Score = 217 bits (554), Expect = 9e-56 Identities = 57/333 (17%), Positives = 104/333 (31%), Gaps = 22/333 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV-PGKHE 84 I + +R ++ + I V + Y D + L A L + Sbjct: 9 AIKKVLVANRGEIAVRVIRACRDVGVGSVAVYAEPDVDAVFVRLADEAFGLGGSTAAESY 68 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + D + P +G L E+ + A L +VG A DK Sbjct: 69 LDIGKVIDAAQRSGADAVHPG-YGFLSENADFAQAVLDAGLVWVGPSPEAIRVLGDKVTA 127 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 +R+ + G + P + GLP+ +K A G G+ S E+ Sbjct: 128 RRIALEVGAPLVPGT--EEPASGADEVVAFAEEHGLPVAIKAAFGGGGRGLKVARSLEEI 185 Query: 205 AIAVD------LAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 + A + VE+ + R +E VL + + G Sbjct: 186 PGLFESAVREAEAAFGRGECFVERYLDRPRHVEAQVLADRHGGVVVVGTRD--CSLQRRH 243 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E ++ E ++I A + G AG V+ + + + E+N Sbjct: 244 QKLVEE-----APAPFLSEEQRERIHTAAREICARAGYAGAGTVEFLVGADGTISFLEVN 298 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 T + P + +GL R+ Sbjct: 299 TRLQVEH----PVSEETTGLDLVVEQLRIAAGE 327 >pir||T06565 acetyl-CoA carboxylase (EC 6.4.1.2) biotin carboxylase chain - soybean (fragment) gb|AAA85742.1| (U34393) acetyl-CoA carboxylase biotin carboxylase subunit [Glycine max] Length = 289 Score = 216 bits (551), Expect = 2e-55 Identities = 46/298 (15%), Positives = 94/298 (31%), Gaps = 17/298 (5%) Query: 33 KSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLA-QVPGKHEHQLIDAQ 91 +R + +L I + + + Y D H+ A + + Sbjct: 1 ANRGETLLRVIRTCREMGIKTVAVYSTADKDSLHVRFADEAACIGKPAGVDSYLNIPHIM 60 Query: 92 NGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDA 151 + D + P +G L E+ + + F+G DK K + A Sbjct: 61 AAAEITNADAVHPG-YGFLAENAKFSQICADHGIKFIGPTPDMINNMGDKITAKETMIKA 119 Query: 152 GLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV--- 208 G+ + P + ++ +G P+ +K G G+ V E + A Sbjct: 120 GVPVVPGSGGL-LESLEQAKDLAKNHVGYPVILKATAGGGGEGMRVVWEESELERAYNTA 178 Query: 209 ---DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDED 264 A + + +E+ + + R IE V G+ E K ++E Sbjct: 179 KAEAAASFKNDGIYMEKFVEEPRHIEIQVAGDQYGNVCHLSERD--CSIQRRHQKLVEE- 235 Query: 265 GAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGF 322 + E+ +K+ A A++A + + ++ + E+NT Sbjct: 236 ----SPSPFMTDELREKMGAAAIKAASAINYESVGTIEFLVDKHRNFYFMEMNTRLQV 289 >gb|AAA53140.1| (U08469) 3-methylcrotonyl-CoA carboxylase, biotin-carrier domain [Glycine max] Length = 674 Score = 216 bits (551), Expect = 2e-55 Identities = 51/318 (16%), Positives = 102/318 (32%), Gaps = 23/318 (7%) Query: 52 SDASNYLLNADDPAHIALRPSATSLAQVPGK-HEHQLIDAQNGQPLPTVDVIFPIVHGTL 110 + Y D H+A A + P + + I P +G L Sbjct: 1 QTVAVYSDADRDSLHVATADEAIRIGPPPARLSYLNGASIVDAAIRSGAQAIHPG-YGFL 59 Query: 111 GEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNIS 170 E + + L F+G A DK +KR++ AG+ + P ++ Sbjct: 60 SESADFAKLCEESGLTFIGPPASAIRDMGDKSASKRIMGAAGVPLVPGYHGY--DQDIEK 117 Query: 171 FAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAV------DLAFEFDHKVIVEQGI 224 ++G P+ +KP + G G+ V + +++ + A + +++E+ I Sbjct: 118 MKLEADRIGYPVLIKPTHGGGGKGMRIVHTPDEFVESFLAAQREAAASFGVNTILLEKYI 177 Query: 225 -KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIR 283 + R IE + G+ + E K I+E I+ + ++ Sbjct: 178 TRPRHIEVQIFGDKHGNVLHLYERD--CSVQRRHQKIIEE-----APAPNISADFRAQLG 230 Query: 284 AIAVQAYQTLGCAGMARVDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDL 342 AV A + + V+ + +E E+NT + P G + Sbjct: 231 VAAVSAAKAVNYYNAGTVEFIVDTVSDEFYFMEMNTRLQVEH----PVTEMIVGQDLVEW 286 Query: 343 ITRLIELALERHAADNAL 360 + + Sbjct: 287 QILVANGEALPLSQSQVP 304 >pir||S71006 biotin carboxylase protein A1 - Saccharopolyspora erythraea emb|CAA63308.1| (X92556) biotin carboxylase and biotin carboxyl carrier protein [Saccharopolyspora erythraea] Length = 597 Score = 216 bits (550), Expect = 3e-55 Identities = 56/330 (16%), Positives = 103/330 (30%), Gaps = 22/330 (6%) Query: 29 DAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV-PGKHEHQL 87 + +R ++ + I V + Y D + L A L + + Sbjct: 18 KVLVANRGEIAVRVIRACRDVGVGSVAVYAEPDVDAVFVRLADEAFGLGGSTAAESYLDI 77 Query: 88 IDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRL 147 + D + P +G L E+ + A L +VG A DK +R+ Sbjct: 78 GKVIDAAQRSGADAVHPG-YGFLSENADFAQAVLDAGLVWVGPSPEAIRVLGDKVTARRI 136 Query: 148 LRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIA 207 + G + P + GLP+ +K A G G+ S E+ Sbjct: 137 ALEVGAPLVPGT--EEPASGADEVVAFAEEHGLPVAIKAAFGGGGRGLKVARSLEEIPGL 194 Query: 208 VD------LAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKY 260 + A + VE+ + R +E VL + + G K Sbjct: 195 FESAVREAEAAFGRGECFVERYLDRPRHVEAQVLADRHGGVVVVGTRD--CSLQRRHQKL 252 Query: 261 IDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLP 320 ++E ++ E ++I A + G AG V+ + + + E+NT Sbjct: 253 VEE-----APAPFLSEEQRERIHTAAREICARAGYAGAGTVEFLVGADGTISFLEVNTRL 307 Query: 321 GFTNISMYPKLWQASGLGYTDLITRLIELA 350 + P + +GL R+ Sbjct: 308 QVEH----PVSEETTGLDLVVEQLRIAAGE 333 >ref|NP_344948.1| (NC_003028) acetyl-CoA carboxylase, biotin carboxylase [Streptococcus pneumoniae TIGR4] gb|AAF98279.1|AF197933_9 (AF197933) acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus pneumoniae] gb|AAK74588.1| (AE007354) acetyl-CoA carboxylase, biotin carboxylase [Streptococcus pneumoniae TIGR4] Length = 455 Score = 215 bits (548), Expect = 5e-55 Identities = 58/343 (16%), Positives = 112/343 (31%), Gaps = 23/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 + +R ++ + I + ++ + Y + H L A + + Sbjct: 1 MFRKILIANRGEIAVRIIRAARELGIATVAVYSTADKEALHTLLADEAVCIGPGKATESY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + L + I P G L E+ M + F+G DK Sbjct: 61 LNINAVLSAAVLTEAEAIHPGF-GFLSENSKFATMCEEVGIKFIGPSGHVMDMMGDKINA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + + AG+ + P N V K+G P+ +K + G G+ KV + Sbjct: 120 RAQMIKAGVPVIPGSDGEVHNSEEALI--VAEKIGYPVMLKASAGGGGKGIRKVEKPDDL 177 Query: 205 AIAVDLAFE------FDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A + A + + +E+ I R IE +LG+++ GE + Sbjct: 178 VSAFETASSEAKANYGNGAMYIERVIYPARHIEVQILGDEHGHVIHLGERD--CSLQRNN 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTP-ENEVVINEI 316 K ++E AI + +I A AV+A + +G ++ L + E+ Sbjct: 236 QKVLEE-----SPSIAIGKTLRHEIGAAAVRAAEFVGYENAGTIEFLLDEASSNFYFMEM 290 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 NT + P SG+ + ++ Sbjct: 291 NTRVQVEH----PVTEFVSGVDIVKEQICIAAGQPLSVKQEDI 329 >pir||T42206 probable acyl-CoA carboxylase complex A chain - Streptomyces coelicolor gb|AAD28554.1|AF113604_1 (AF113604) putative acyl-CoA carboxylase complex A subunit [Streptomyces coelicolor A3(2)] Length = 590 Score = 215 bits (547), Expect = 6e-55 Identities = 46/337 (13%), Positives = 103/337 (29%), Gaps = 22/337 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ-VPGKHEH 85 + + +R ++ + ++ + Y D H+ A +L P Sbjct: 1 MRKVLIANRGEIAVRVARACRDAGIASVAVYADPDRDALHVRAADEAFALGGDTPATSYL 60 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + D I P +G L E+ + A L ++G A +K + Sbjct: 61 DIAKVLKAARESGADAIHPG-YGFLSENADFAQAVLDAGLIWIGPPPHAIRDRGEKVAAR 119 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 + + AG + + GLP+ +K A G G+ + E+ Sbjct: 120 HIAQRAGAPLVAGT--PDPVSGADEVVAFAKEHGLPIAIKAAFGGGGRGLKVARTLEEVP 177 Query: 206 IAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 D A + VE+ + R +E L + + Sbjct: 178 ELYDSAVREAVAAFGRGECFVERYLDKPRHVETQCLADTHGNVVVVSTRD--CSLQRRHQ 235 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K ++E ++ +++ + + + G G V+ + + + E+NT Sbjct: 236 KLVEE-----APAPFLSEAQTEQLYSSSKAILKEAGYVGAGTVEFLVGMDGTISFLEVNT 290 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 + P + +G+ + R+ + + Sbjct: 291 RLQVEH----PVTEEVAGIDLVREMFRIADGEELGYD 323 >ref|NP_266934.1| (NC_002662) biotin carboxylase (EC 6.3.4.14) [Lactococcus lactis subsp. lactis] gb|AAK04876.1|AE006311_7 (AE006311) biotin carboxylase (EC 6.3.4.14) [Lactococcus lactis subsp. lactis] Length = 455 Score = 215 bits (547), Expect = 6e-55 Identities = 58/342 (16%), Positives = 112/342 (31%), Gaps = 23/342 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 + +R ++ + I + V + Y D H+ L A + + Sbjct: 1 MFNKILIANRGEIAVRIIRAARELGVGTVAIYSTADRDALHVHLADEAICVGPARSTESY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + I P G L E+ + N+ F+G DK Sbjct: 61 LNMNNILSAAVATGAQAIHPGF-GFLSENSKFARLCEEMNIKFIGPSAKVMDMMGDKINA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + + AG+ + P ++ ++G P+ +K + G G+ KV + E+ Sbjct: 120 RAEMIKAGVPVTPGSEGEVH--TTDEAVKIAEEIGYPIMLKASAGGGGKGIRKVNNVEEL 177 Query: 205 AI------AVDLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A A + + +E+ I R IE +LG+ GE + Sbjct: 178 VPAFEAAQAEAQAAFGNGAMFIERMIFPARHIEVQILGDSQGNVIHLGERD--CSLQRNN 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTP-ENEVVINEI 316 K ++E AI + ++I A AV+A Q + ++ L + E+ Sbjct: 236 QKVLEE-----SPSVAIGHTLRNEITAAAVKAAQHVSYENAGTIEFLLDESSGKFYFMEM 290 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 NT + P SG+ R+ ++ Sbjct: 291 NTRVQVEH----PVTEFVSGVDIVKEQIRVANGNELSVKQED 328 >ref|NP_357979.1| (NC_003098) Biotin carboxylase (a subunit of acetyl-CoA carboxylase (ACC) [Streptococcus pneumoniae R6] gb|AAK99189.1| (AE008418) Biotin carboxylase (a subunit of acetyl-CoA carboxylase (ACC) [Streptococcus pneumoniae R6] Length = 455 Score = 215 bits (547), Expect = 6e-55 Identities = 58/343 (16%), Positives = 111/343 (31%), Gaps = 23/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 + +R ++ + I + ++ + Y + H L A + + Sbjct: 1 MFRKILIANRGEIAVRIIRAARELGIATVAVYSTADKEALHTLLADEAVCIGPGKATESY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + L + I P G L E+ M + F+G DK Sbjct: 61 LNINAVLSAAVLTEAEAIHPGF-GFLSENSKFATMCEEVGIKFIGPSGHVMDMMGDKINA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + + AG+ + P N V K+G P+ +K + G G+ KV + Sbjct: 120 RAQMIKAGVPVIPGSDGEVHNSEEALI--VAEKIGYPVMLKASAGGGGKGIRKVEKPDDL 177 Query: 205 AIAVDLAFE------FDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A + A + + +E+ I R IE +LG+++ GE + Sbjct: 178 VSAFETASSEAKANYGNGAMYIERVIYPARHIEVQILGDEHGHVIHLGERD--CSLQRNN 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTP-ENEVVINEI 316 K ++E AI + +I A AV+A + +G ++ L E+ Sbjct: 236 QKVLEE-----SPSIAIGKTLRHEIGAAAVRAAEFVGYENAGTIEFLLDEASRNFYFMEM 290 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 NT + P SG+ + ++ Sbjct: 291 NTRVQVEH----PVTEFVSGVDIVKEQICIAAGQPLSVKQEDI 329 >gb|AAB40890.1| (U35023) acyl coenzyme A carboxylase [Corynebacterium glutamicum] Length = 591 Score = 215 bits (547), Expect = 7e-55 Identities = 50/345 (14%), Positives = 109/345 (31%), Gaps = 22/345 (6%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ-VPGKH 83 + I + +R ++ + + + Y D ++ A +L + Sbjct: 6 RKITKVLVANRGEIAIRVFRAARDEGIGSVAVYAEPDADAPFVSYADEAFALGGQTSAES 65 Query: 84 EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + + D I P +G L E+ + L ++G + + DK Sbjct: 66 YLVIDKIIDAARKSGADAIHPG-YGFLAENADFAEAVINEGLIWIGPSPESIRSLGDKVT 124 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 + + A +AP + + GLP+ +K A G G+ E+ Sbjct: 125 ARHIADTAKAPMAPGTKEPVKDAAE--VVAFAEEFGLPIAIKAAFGGGGRGMKVAYKMEE 182 Query: 204 YAIAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 A + A + VE+ + R +E V+ + + G Sbjct: 183 VADLFESATREATAAFGRGECFVERYLDKARHVEAQVIADKHGNVVVAGTRD--CSLQRR 240 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEI 316 K ++E + + +++ + A + G G V+ + + + E+ Sbjct: 241 FQKLVEE-----APAPFLTDDQRERLHSSAKAICKEAGYYGAGTVEYLVGSDGLISFLEV 295 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALK 361 NT + P + +G+ + R+ E D A + Sbjct: 296 NTRLQVEH----PVTEETTGIDLVREMFRIAEGHELSIKEDPAPR 336 >ref|NP_232019.1| (NC_002505) carbamoyl-phosphate synthase, large subunit [Vibrio cholerae] pir||D82083 carbamoyl-phosphate synthase, large chain VC2389 [imported] - Vibrio cholerae (group O1 strain N16961) gb|AAF95532.1| (AE004309) carbamoyl-phosphate synthase, large subunit [Vibrio cholerae] Length = 1076 Score = 214 bits (546), Expect = 7e-55 Identities = 54/362 (14%), Positives = 120/362 (32%), Gaps = 52/362 (14%) Query: 2 EKLRVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 +K ++ ++ G G+ E + A A+ + ++ +++ + + D S Sbjct: 557 DKDKIMVLGGGPNRIGQGIEFDYCCVHA---ALALREDGYETIMVNCNPETVSTDYDTS- 612 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L + + G L Sbjct: 613 ------DRLYFEPVTLEDVL---------------AIVRVEKPKGVIVQYGGQTP--LKL 649 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L A +P +G+ A D++ ++ ++ GL T+T E Sbjct: 650 ARALEAAGVPVIGTSPDAIDRAEDRERFQQAVQRLGLKQPDNATVT----AIEQAIEKSR 705 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGI-KGREIECAV 233 ++G PL V+P+ + V E+ + A + V++++ + E++ Sbjct: 706 EIGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDDATEVDVDA 765 Query: 234 LGND-NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + + E + + + D A + ++ EI DK+R + Sbjct: 766 ICDGERVVIGGIMEHIEQAGVH-------SGDSACSLPAYTLSQEIQDKMREQVEKLAFE 818 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 LG G+ + + +NEV + E+N T P + +A+G + R++ Sbjct: 819 LGVRGLMNIQFAV-KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAARVMVGQTL 873 Query: 353 RH 354 Sbjct: 874 EQ 875 Score = 158 bits (399), Expect = 8e-38 Identities = 47/374 (12%), Positives = 110/374 (28%), Gaps = 56/374 (14%) Query: 6 VGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 + I+ G++ E + S A A+ + + V+L+ + Sbjct: 10 ILILGAGPIVIGQACEFDYSGAQA---CKALREEGYRVILVNSNPATIMTD--------- 57 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ--- 117 + + + D I P + G + +L Sbjct: 58 ------PEMADATY-------IEPIHWEVVRKIIEKERPDAILPTMGGQTALNCALALEK 104 Query: 118 -GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 G+L + +G+ A D+ + ++ GL T +V Sbjct: 105 HGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADTAKSMEEAY----KVLD 160 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGR---EIEC 231 +G P ++P+ G + E++ + ++++++ + G E+E Sbjct: 161 MVGFPCIIRPSFTMGGSGGGIAYNREEFEEICTRGLDLSPTNELLIDESLIGWKEYEMEV 220 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 NDN E + D V + + +R ++ + Sbjct: 221 VRDKNDNCIIVCAIENFDPMGIHT-------GDSITVAPAQTLTDKEYQIMRNASLAVLR 273 Query: 292 TLGC-AGMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 +G G + V + + +VI E+N ++ +A+G + +L Sbjct: 274 EIGVETGGSNVQFGINPKDGRMVIIEMNPRVSRSSA----LASKATGFPIAKVAAKLAVG 329 Query: 350 ALERHAADNALKTT 363 ++ Sbjct: 330 FTLDELMNDITGGA 343 >ref|NP_539644.1| (NC_003317) D-ALANINE--D-ALANINE LIGASE A [Brucella melitensis] gb|AAL51908.1| (AE009514) D-ALANINE--D-ALANINE LIGASE A [Brucella melitensis] Length = 366 Score = 214 bits (546), Expect = 8e-55 Identities = 146/355 (41%), Positives = 222/355 (62%), Gaps = 12/355 (3%) Query: 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNAD 62 K+R+ ++FGG+SAEH+VS+ SA N+++A+D ++++ V + + + GQW +S N L Sbjct: 18 KMRIVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKP 77 Query: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122 + L + DA +D+IFP++HG GEDG++QG+ +V Sbjct: 78 SSG------AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQV 131 Query: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPL 182 A +P G + SA +DKD+ KRL+ +AGL+ A +T+TR +F+ +E LGLP+ Sbjct: 132 ARVPLAGCGIPGSANALDKDIAKRLVNEAGLSTAKSVTITREE--VPAFSALEQALGLPI 189 Query: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNP--Q 240 F+KPA QGSSVGV KV +E Y A+ F +D K++ E+ I+ RE+EC VL ++ Sbjct: 190 FIKPARQGSSVGVHKVVTEADYQAAMSDGFIYDDKLLAEEFIQAREVECGVLEDEGGALF 249 Query: 241 ASTCGEIVLT--SDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGM 298 S GEIV FY+YD KYID DG ++ VPA + ++ ++IRAIA +A++ LGC M Sbjct: 250 VSRAGEIVPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSM 309 Query: 299 ARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 ARVD F+T + +V+NEINT+PGFT++SMY K+ SG+ Y ++I RL+ L R Sbjct: 310 ARVDFFVTADRRIVLNEINTIPGFTDMSMYFKVMAVSGVSYPEIINRLVAHGLAR 364 >pir||T42202 probable acyl-CoA carboxylase complex A chain - Streptomyces coelicolor gb|AAD28553.1|AF113603_1 (AF113603) putative acyl-CoA carboxylase complex A subunit [Streptomyces coelicolor A3(2)] Length = 590 Score = 214 bits (546), Expect = 9e-55 Identities = 46/337 (13%), Positives = 103/337 (29%), Gaps = 22/337 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ-VPGKHEH 85 + + +R ++ + ++ + Y D H+ A +L P Sbjct: 1 MRKVLIANRGEIAVRVARACRDAGIASVAVYADPDRDALHVRAADEAFALGGDTPATSYL 60 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + D I P +G L E+ + A L ++G A +K + Sbjct: 61 DIAKVLKAARESGADAIHPG-YGFLSENAEFAQAVLDAGLIWIGPPPHAIRDRGEKVAAR 119 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 + + AG + + GLP+ +K A G G+ + E+ Sbjct: 120 HIAQRAGAPLVAGT--PDPVSGADEVVAFAKEHGLPIAIKAAFGGGGRGLKVARTLEEVP 177 Query: 206 IAVDL------AFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 D A + VE+ + R +E L + + Sbjct: 178 ELYDSAVREAVAAFGRGECFVERYLDKPRHVETQCLADTHGNVVVVSTRD--CSLQRRHQ 235 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K ++E ++ +++ + + + G G V+ + + + E+NT Sbjct: 236 KLVEE-----APAPFLSEAQTEQLYSSSKAILKEAGYGGAGTVEFLVGMDGTIFFLEVNT 290 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHA 355 + P + +G+ + R+ + + Sbjct: 291 RLQVEH----PVTEEVAGIDLVREMFRIADGEELGYD 323 >prf||2009329A urea amidolyase [Pichia jadinii] Length = 1830 Score = 214 bits (545), Expect = 1e-54 Identities = 58/366 (15%), Positives = 111/366 (29%), Gaps = 35/366 (9%) Query: 10 FGGKSAEHEVSLQ---SAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAH 66 FGG A E + S+K + +R ++ + + + + + Y H Sbjct: 600 FGGWRAYIESAKATESSSKPFKSVLVANRGEIAVRIMRTLKKLGIQSIAIYSEPDQYSQH 659 Query: 67 IALRPSATSLAQ-VPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 + A L + + + I P +G L E+ + + Sbjct: 660 VLDADVAIPLNGTSAAETYINIEKVIKAAKDSKAEAIIPG-YGFLSENAEFADICEKEGI 718 Query: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGL----- 180 FVG + K + + + A + + P L SKLGL Sbjct: 719 VFVGPTGDSIRKLGLKHSAREIAQKANVPLVPGSGLIS---DIDEAIAFASKLGLSNDPE 775 Query: 181 ---PLFVKPANQGSSVGVSKVTSEEQYAIAVD------LAFEFDHKVIVEQGI-KGREIE 230 + +K G +G+ KV + A + A+ D V +E+ + R +E Sbjct: 776 TSVKVMLKSTAGGGGIGLQKVDLLDDLPKAFETVKHQGQAYFGDAGVFLERFVEDARHVE 835 Query: 231 CAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 + G+ A GE + K I+E + +R A Q Sbjct: 836 VQMFGDGFGNAIAVGERD--CSLQRRNQKIIEE-----TPAPNLPESTRQAMRKAAEQLG 888 Query: 291 QTLGCAGMARVDVFL-TPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 ++ V+ +E E+N + P +GL + + ++ Sbjct: 889 GSMNYKCAGTVEFIYEEKRDEFFFLEVNARLQVEH----PITESVTGLDLVEWMLKIAAN 944 Query: 350 ALERHA 355 Sbjct: 945 QAPDFK 950 >gb|AAG30191.1| (AF293442) biotin carboxylase [Streptomyces sp. R1128] Length = 461 Score = 214 bits (544), Expect = 1e-54 Identities = 53/343 (15%), Positives = 105/343 (30%), Gaps = 23/343 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-HE 84 + +R ++ L + + + A + A + P + Sbjct: 1 MFEKVLIANRGEIALRVAATCRELGIRTVVVHSDADRHSAAVRFADEAVCVGPAPPRASY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 V+ + P +G L ED + +G + +K Sbjct: 61 LNAAAVLQAAVQTGVEAVHPG-YGFLSEDPDFAEACEDEGITLIGPPAEVMSRLGNKASA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + ++ AGL + P ++R + +G P+ VK A G G+S V S + + Sbjct: 120 RSIMSQAGLPLLPGSLDPLSDR---EAHALADTIGYPVIVKAAAGGGGRGMSVVHSSDDF 176 Query: 205 AI------AVDLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A LA D +V VE+ + + R +E VL + GE Sbjct: 177 PDTFRRTQATALAVFGDGRVYVERYLPEARHVEIQVLADRYGNVVHLGERD--CSVQRRH 234 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K ++E + + ++ AV + +G G + L P+ E+N Sbjct: 235 QKLVEE-----TPGPRLPDGLAARMGEAAVAGARAVGYVGAGTFEFLLAPDGTFSFMEVN 289 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + P +G+ + ++ Sbjct: 290 CRIQVEH----PVTEMVTGIDLVREQILVAAGRPLTVRQEDIR 328 >ref|NP_522501.1| (NC_003296) PUTATIVE BIOTIN CARBOXYLASE PROTEIN [Ralstonia solanacearum] emb|CAD18091.1| (AL646081) PUTATIVE BIOTIN CARBOXYLASE PROTEIN [Ralstonia solanacearum] Length = 455 Score = 213 bits (543), Expect = 2e-54 Identities = 54/342 (15%), Positives = 96/342 (27%), Gaps = 22/342 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV-PGKHE 84 + +R ++ L + + Y D ++ A + P Sbjct: 1 MFDTVLIANRGEIALRIQRACRGLGLRTVAVYSEADRDAVYVRQADQALCIGPASPTSSY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + I P +G L E+ + A L F+G DK Sbjct: 61 LNQAALLAAARVSGAQAIHPG-YGFLSENAGFVARVTDAGLTFIGPSADCIRTMGDKVSA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 KR +R+AG+ P + + +G P+ VK A G G+ V Sbjct: 120 KRAMREAGVPCVPGPDTSLPEDP-AEVLAIAHGIGFPVIVKAAGGGGGRGMRVVHEASAL 178 Query: 205 A------IAVDLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A + +V +E+ + R +E VL + A G Sbjct: 179 ADALALTREEARRAFGNPEVYIEKFLTHPRHVEIQVLADRYGHAVWLGSRD--CSLQRRH 236 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+E I + ++ A + +G G+ + E+N Sbjct: 237 QKVIEE-----APAPGIDASLIAEVGERCAAACRQIGYCGVGTFEFLY-ENGAFYFIEMN 290 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 T + P SG+ R+ + Sbjct: 291 TRLQVEH----PVTEMTSGIDIVQQQIRVARGEPLTLRQGDI 328 >ref|NP_356721.1| (NC_003063) AGR_L_1864p [Agrobacterium tumefaciens] [Agrobacterium tumefaciens str. C58 (Cereon)] ref|NP_534405.1| (NC_003305) biotin carboxylase [Agrobacterium tumefaciens str. C58 (U. Washington)] gb|AAK89506.1| (AE008292) AGR_L_1864p [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAL44721.1| (AE009322) biotin carboxylase [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 576 Score = 212 bits (541), Expect = 3e-54 Identities = 58/347 (16%), Positives = 111/347 (31%), Gaps = 23/347 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSL-AQVPGKHEH 85 + + +R ++ + I + + + Y D + L A +L P + Sbjct: 1 MKKVLIANRGEIAVRIIRACRDYGLQSVAVYADPDQDALFVRLADEAYALEGVRPAETYL 60 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + D + P +G L E + A L ++G D A DK + + Sbjct: 61 DISKLIAIAKRAGADAVHPG-YGFLSERAEFAQAVIDAGLIWIGPDPDVIEALGDKVMAR 119 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 R+ G + ++ + GLP+ +K A+ G G+ E+ A Sbjct: 120 RIATGVGAPLVAGSDGPVSSAAE--VTAFAEQHGLPVAIKAAHGGGGRGLKVAWKMEEIA 177 Query: 206 IAVDLA------FEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 + A + +E+ + R IE V+ + + G + Sbjct: 178 ELYESAVREATVAFGRGECFLERFLDRPRHIEAQVIADKHGNVLVLGTRD--CSLQRRNQ 235 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K I+E ++ E KI A G +G V+ L + + E+NT Sbjct: 236 KLIEE-----APAPFLSDEQRQKIHDAAKAICAAAGYSGAGTVEFLLGVDGTISFLEVNT 290 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALER-HAADNALKTTM 364 + P + +G+ R+ E R +M Sbjct: 291 RLQVEH----PVTEETTGIDLVIEQFRIAEGHKLRVLETPEPRGHSM 333 >ref|NP_266825.1| (NC_002662) pyruvate carboxylase (6.4.1.1) [Lactococcus lactis subsp. lactis] gb|AAK04767.1|AE006300_2 (AE006300) pyruvate carboxylase (6.4.1.1) [Lactococcus lactis subsp. lactis] Length = 1137 Score = 212 bits (541), Expect = 3e-54 Identities = 51/333 (15%), Positives = 107/333 (31%), Gaps = 25/333 (7%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV--PGKHE 84 + + +R ++ + + +S + Y + H + + Q P Sbjct: 1 MKKLLVANRGEIAVRVFRACNELGLSTVAVYAREDEYSVHRFKADESYLIGQGKKPIDAY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + D D I P +G L E+ +R A L FVG ++ DK Sbjct: 61 LDIDDIIRVALESGADAIHPG-YGLLSENLEFATKVRAAGLVFVGPELHHLDIFGDKIKA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K +A + P T E G P+ +K A G G+ +++ + Sbjct: 120 KAAADEAKVPGIPG---TNGAVDIDGALEFAKTYGYPVMIKAALGGGGRGMRVASNDAEM 176 Query: 205 AIAVDLA------FEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A ++ VE+ I + IE +LG+ + E + Sbjct: 177 HDGYARAKSEAIGAFGSGEIYVEKYIENPKHIEVQILGDSHGNIIHLHERD--CSVQRRN 234 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEIN 317 K I+ + ++ + ++I AV+ + +G V+ + +++ E+N Sbjct: 235 QKVIE-----IAPAVGLSLDFRNEICEAAVKLCKNVGYVNAGTVEFLV-KDDKFYFIEVN 288 Query: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 + +G+ + + Sbjct: 289 PRVQVEHT----ITELITGVDIVQAQILIAQGK 317 >ref|NP_372130.1| (NC_002758) acetyl-CoA carboxylase [Staphylococcus aureus subsp. aureus Mu50] ref|NP_374719.1| (NC_002745) acetyl-CoA carboxylase (biotin carboxylase subunit), accC homolog [Staphylococcus aureus subsp. aureus N315] dbj|BAB42698.1| (AP003134) ORFID:SA1434~acetyl-CoA carboxylase (biotin carboxylase subunit), accC homolog [Staphylococcus aureus subsp. aureus N315] dbj|BAB57768.1| (AP003362) acetyl-CoA carboxylase [Staphylococcus aureus subsp. aureus Mu50] Length = 453 Score = 212 bits (541), Expect = 3e-54 Identities = 54/342 (15%), Positives = 111/342 (31%), Gaps = 23/342 (6%) Query: 27 IVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKH-EH 85 ++ + +R ++ + I ++ + + Y + H+ L A + + Sbjct: 1 MLRCLIANRGEIAVRIIRACREYGIETVAVYAKGDEQSLHVHLADQAICIGEANALDSYL 60 Query: 86 QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTK 145 + + + + I P +G L E + + F+G DK + Sbjct: 61 NIDRIISAAQITGANAIHPG-YGFLSESTKFAQTVEEQGIAFIGPTKKTMEMMGDKITAR 119 Query: 146 RLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA 205 + + AG+ + P A H + +G P+ +K A+ G G+ V E Sbjct: 120 QTVHHAGVPVIPGS--NGAVNHVSEIENLAKDIGYPVVIKAASGGGGKGIRIVKKAEDLE 177 Query: 206 IAVDLA------FEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAYDT 258 A A + D +V VE I + +E V+G+ GE + Sbjct: 178 KAFKEAKSEGKKYFDDDRVYVEAFIPVAKHVEVQVMGDGQDNYVHLGERD--CSVQRKNQ 235 Query: 259 KYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINT 318 K I+E AA+ E +I AV+ + ++ +T + E+N Sbjct: 236 KLIEE-----SPCAALTEERRQQICNDAVKVARAANYRSAGTIEFLVT-DTAHYFIEMNA 289 Query: 319 LPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNAL 360 + + + L+E + + Sbjct: 290 RIQVEHTVTEMRAER----DLVAAQLYLLEHNHLPFSQSDIQ 327 >ref|NP_356380.1| (NC_003063) AGR_L_1177p [Agrobacterium tumefaciens] [Agrobacterium tumefaciens str. C58 (Cereon)] ref|NP_534751.1| (NC_003305) acetyl-CoA carboxylase, biotin carboxylase [Agrobacterium tumefaciens str. C58 (U. Washington)] gb|AAK89165.1| (AE008257) AGR_L_1177p [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAL45067.1| (AE009356) acetyl-CoA carboxylase, biotin carboxylase [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 464 Score = 212 bits (540), Expect = 4e-54 Identities = 52/342 (15%), Positives = 103/342 (29%), Gaps = 22/342 (6%) Query: 25 KNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK-H 83 + + +R ++ + + + +++ S + Sbjct: 14 RRFDTVLIANRGEIAARIQRACHELGLKTVAICSEADRGASYVQTADSFLCIGPSAAGKS 73 Query: 84 EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 L + I P +G L E+ + + A L F+G + A DK Sbjct: 74 YLNKDAILLAARLTSSGAIHPG-YGFLSENTAFSDAVEKAGLVFIGPGASSIATMGDKIA 132 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 KR + A + P + + + ++G P+ VK A G G+ V Sbjct: 133 AKRAMIAAAVPCVPGPDTALPDDP-AAVESIAQEIGYPVIVKAAGGGGGRGMRVVPDAGS 191 Query: 204 YAIAV------DLAFEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 A+ + +E+ ++ R IE VL + + A G Sbjct: 192 LHEAIPTTREEARQAFGSPALYMEKFLQHPRHIEIQVLCDTHGHAVWLGHRD--CSMQRR 249 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEI 316 K ++E I+P++ + V+A Q +G G+ + E+ Sbjct: 250 HQKVVEE-----APAPGISPDVIRSVGQACVEACQQIGYRGVGTFEFLY-ENGAFYFIEM 303 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADN 358 NT + P SG+ R + + Sbjct: 304 NTRLQVEH----PVTEMTSGIDIVQAQIRAAQGEELVLRQQD 341 >ref|NP_269768.1| (NC_002737) putative acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus pyogenes] [Streptococcus pyogenes M1 GAS] gb|AAK34489.1| (AE006603) putative acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus pyogenes M1 GAS] Length = 454 Score = 212 bits (539), Expect = 6e-54 Identities = 57/346 (16%), Positives = 114/346 (32%), Gaps = 23/346 (6%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 + +R ++ + I + +S + Y + H L A + + Sbjct: 1 MFKKILIANRGEIAVRIIRAARELGISTVAVYSEADKEALHTILADEAICIGPARSKESY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + + + I P G L E+ M N+ F+G DK Sbjct: 61 LNMNSVLSAAIVTGAQAIHPGF-GFLSENSKFATMCEEMNIKFIGPSASVMDKMGDKINA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 + + AG+ + P N + +K+G P+ +K + G G+ KV +E Sbjct: 120 RSEMIKAGVPVIPGSDGEVYNA--QEALAIANKIGYPVMLKASAGGGGKGIRKVETEADL 177 Query: 205 AIAVDLA------FEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A + A + + +E+ I R IE +LG+ GE + Sbjct: 178 EAAFNAASQEALGAFGNGAMYLEKVIYPARHIEVQILGDAYGNIIHLGERD--CSLQRNN 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENE-VVINEI 316 K ++E AI + ++ AV+A + + ++ L ++E E+ Sbjct: 236 QKVLEE-----SPSIAIGNTLRHEMGQAAVRAAEAVAYENAGTIEFLLDEDSEKFYFMEM 290 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALKT 362 NT + P +G+ ++ ++ T Sbjct: 291 NTRIQVEH----PVTEFVTGVDIVKEQIKIAAGQPLAINQEDITIT 332 >ref|NP_420971.1| (NC_002696) acetyl/propionyl-CoA carboxylase, alpha subunit [Caulobacter crescentus] gb|AAK24139.1| (AE005888) acetyl/propionyl-CoA carboxylase, alpha subunit [Caulobacter crescentus] Length = 654 Score = 209 bits (532), Expect = 3e-53 Identities = 59/347 (17%), Positives = 111/347 (31%), Gaps = 27/347 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPG-KHE 84 + + +R ++ I + V + Y + + +A + P + Sbjct: 1 MLSSVLIANRGEIARRIIRTARELGVRTIAVYSEADANAPFVMEADAAILIGPAPAKESY 60 Query: 85 HQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVT 144 + I P +G L E+ + A L ++G A A KD Sbjct: 61 LDPRKILAAARQMGAEAIHPG-YGFLSENAEFAQSVIDAGLVWIGPPPSAIRAMGLKDAA 119 Query: 145 KRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQY 204 K ++ AG+ P ++ +K+G P+ +K G G+ KV E + Sbjct: 120 KAVMIKAGVPTTPGYLG--EDQSVERLTVEAAKIGYPVLIKAVAGGGGKGMRKVERAEDF 177 Query: 205 AIAV------DLAFEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 257 A+ A D +V++E+ + + R IE V G+ + E Sbjct: 178 EAALGSCRREASAAFGDDRVLLEKYVTRPRHIEVQVFGDSHGNVVHLFERD--CSLQRRH 235 Query: 258 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE-----NEVV 312 K I+E + + + A AV+A Q + G V+ + + Sbjct: 236 QKVIEE-----APAPGMDEATREAVCAAAVKAAQAVNYVGAGTVEFIADASEGLRADRIW 290 Query: 313 INEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNA 359 E+NT + P +G + R+ D Sbjct: 291 FMEMNTRLQVEH----PVTEMVTGQDLVEWQLRVASGEPLPLEQDEI 333 >pdb|1EHI|A Chain A, D-Alanine:d-Lactate Ligase (Lmddl2) Of Vancomycin-Resistant Leuconostoc Mesenteroides pdb|1EHI|B Chain B, D-Alanine:d-Lactate Ligase (Lmddl2) Of Vancomycin-Resistant Leuconostoc Mesenteroides Length = 377 Score = 209 bits (531), Expect = 4e-53 Identities = 124/372 (33%), Positives = 209/372 (55%), Gaps = 17/372 (4%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSR-FDVVLLGIDKQGQWHVSDAS--NY 57 M K RV ++FGG S+EH+VS +SA+N +AI+ + +++++ I + G + +++S Sbjct: 1 MTKKRVALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKIL 60 Query: 58 LLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ 117 L + P A + + L + D+ FP+VHG LGEDG+LQ Sbjct: 61 ALEDEQPIVDAFMKTVDASDP--------LARIHALKSAGDFDIFFPVVHGNLGEDGTLQ 112 Query: 118 GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK 177 G+ ++ + P+VG+ + A DK +TK LL G+ +I + + +N S+ ++ ++ Sbjct: 113 GLFKLLDKPYVGAPLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAE 172 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGN 236 LG +FVK ANQGSSVG+S+VT+ E+Y A+ +F++D+KV++E+ + G RE+E V+GN Sbjct: 173 LGNIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVNGARELEVGVIGN 232 Query: 237 DNPQASTCGE-----IVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 D P S G +Y Y+ K++D +PA ++PE+ +++ +A+ AY+ Sbjct: 233 DQPLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQLSPEVTKEVKQMALDAYK 292 Query: 292 TLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 L G AR+D L N + E NTLPGFTN+S++ +LW S + L+ LI+ Sbjct: 293 VLNLRGEARMDFLLDENNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLIDYGF 352 Query: 352 ERHAADNALKTT 363 E A + L + Sbjct: 353 EDFAQNKKLSYS 364 >sp|Q48745|DDL_LEUME D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) gb|AAA87679.1| (U08909) putative D-alanine:D-alanine ligase [Leuconostoc mesenteroides] Length = 377 Score = 208 bits (530), Expect = 6e-53 Identities = 126/370 (34%), Positives = 210/370 (56%), Gaps = 13/370 (3%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDK-SRFDVVLLGIDKQGQWHVSDASNYLL 59 M K RV ++FGG S+EH+VS +SA+N +AI+ ++++++ I + G + +++S +L Sbjct: 1 MTKKRVALIFGGNSSEHDVSKRSAQNFYNAIEATDKYEIIVFAIAQNGFFLDTESSKKIL 60 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119 +D I T P L + D+ FP+VHG LGEDG+LQG+ Sbjct: 61 ALEDEQPIVDAFMKTVDTSDP------LARIHALKSAGDFDIFFPVVHGNLGEDGTLQGL 114 Query: 120 LRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLG 179 ++ + P+VG+ + A DK +TK LL G+ +I + + +N S+ ++ ++LG Sbjct: 115 FKLLDKPYVGAPLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELG 174 Query: 180 LPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGNDN 238 +FVK ANQGSSVG+S+VT+ E+Y A+ +F++D+KV++E+ + G RE+E V+GND Sbjct: 175 NIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVNGARELEVGVIGNDQ 234 Query: 239 PQASTCGE-----IVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 P S G +Y Y+ K++D +PA ++PE+ +++ +A+ AY+ L Sbjct: 235 PLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFEIPAQLSPEVTKEVKQMALDAYKVL 294 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G AR+D L N + E NTLPGFTN+S++ +LW S + L+ LI+ E Sbjct: 295 NLRGEARMDFLLDENNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLIDYGFED 354 Query: 354 HAADNALKTT 363 A + L + Sbjct: 355 FAQNKKLSYS 364 >gb|AAB18338.1| (U75444) D-Ala-D-Ala ligase2 [Leuconostoc mesenteroides] Length = 377 Score = 207 bits (528), Expect = 1e-52 Identities = 124/372 (33%), Positives = 209/372 (55%), Gaps = 17/372 (4%) Query: 1 MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSR-FDVVLLGIDKQGQWHVSDAS--NY 57 M K RV ++FGG S+EH+VS +SA+N +AI+ + +++++ I + G + +++S Sbjct: 1 MTKKRVALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKIL 60 Query: 58 LLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ 117 L + P A + + L + D+ FP+VHG LGEDG+LQ Sbjct: 61 ALEDEQPIVDAFMKTVDASDP--------LARIHALKSAGDFDIFFPVVHGNLGEDGTLQ 112 Query: 118 GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK 177 G+ ++ + P+VG+ + A DK +TK LL G+ +I + + +N S+ ++ ++ Sbjct: 113 GLFKLLDKPYVGAPLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAE 172 Query: 178 LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKG-REIECAVLGN 236 LG +FVK ANQGSSVG+S+VT+ E+Y A+ +F++D+KV++E+ + G RE+E V+GN Sbjct: 173 LGNIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVNGARELEVGVIGN 232 Query: 237 DNPQASTCGE-----IVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 D P S G +Y Y+ K++D +PA ++PE+ +++ +A+ AY+ Sbjct: 233 DQPLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFEIPAQLSPEVTKEVKQMALDAYK 292 Query: 292 TLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELAL 351 L G AR+D L N + E NTLPGFTN+S++ +LW S + L+ LI+ Sbjct: 293 VLNLRGEARMDFLLDENNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLIDYGF 352 Query: 352 ERHAADNALKTT 363 E A + L + Sbjct: 353 EDFAQNKKLSYS 364 >ref|NP_274851.1| (NC_003112) carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis MC58] pir||D81035 carbamoyl-phosphate synthase (glutamine-hydrolyzing) (EC 6.3.5.5) large chain NMB1855 [similarity] - Neisseria meningitidis (group B strain MD58) gb|AAF42189.1| (AE002535) carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis MC58] Length = 1071 Score = 207 bits (527), Expect = 1e-52 Identities = 59/357 (16%), Positives = 122/357 (33%), Gaps = 52/357 (14%) Query: 2 EKLRVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 ++ +V I+ G G+ E + A A+ +S F+ +++ + + D S Sbjct: 552 DRKKVMILGGGPNRIGQGIEFDYCCVHA---ALALRESGFETIMVNCNPETVSTDFDTS- 607 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L V ++ +I GQ L Sbjct: 608 ------DRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTPLK-----------------L 644 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L + +G+ + A D++ +++L D GL P + Sbjct: 645 ANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALV----KAE 700 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEF--DHKVIVEQGI-KGREIECAV 233 ++G PL V+P+ + V S E+ + A + D V+++ + E++ Sbjct: 701 EIGYPLVVRPSYVLGGRAMQVVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDC 760 Query: 234 LGNDNPQAS-TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + + + V + + D + P +++ EI D+IR Sbjct: 761 VSDGKDVVIGGIMQHVEQAGIH-------SGDSGCSLPPYSLSEEIQDEIRRQTKAMAYA 813 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 LG G+ V + + V + E+N T P + +A+G+ + R + Sbjct: 814 LGVVGLMNVQFAV-QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKVGARCMAG 865 Score = 153 bits (386), Expect = 3e-36 Identities = 51/372 (13%), Positives = 115/372 (30%), Gaps = 57/372 (15%) Query: 4 LRVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYL 58 + I+ G++ E + S A A+ + + V+L+ + Sbjct: 8 KSILIIGAGPIVIGQACEFDYSGAQA---CKALREEGYKVILVNSNPATIMTD------- 57 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ- 117 + + D I P + G + +L Sbjct: 58 --------PEMADVTY-------IEPIMWQTVEKIIAKERPDAILPTMGGQTALNCALDL 102 Query: 118 ---GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 G+L N+ +G+ A D+ K + GL+ N + Sbjct: 103 ARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFVCHTMNEALAA---- 158 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGR---EI 229 + ++G P ++P+ G +++++ + F+ ++++EQ + G E+ Sbjct: 159 QEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQSVLGWKEYEM 218 Query: 230 ECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 E NDN E + D V + + +R ++ Sbjct: 219 EVVRDKNDNCIIICSIENFDPMGVHT-------GDSITVAPAQTLTDKEYQIMRNASLAV 271 Query: 290 YQTLGC-AGMARVDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 + +G G + V + P E+++ E+N ++ +A+G + +L Sbjct: 272 LREIGVDTGGSNVQFAVNPANGEMIVIEMNPRVSRSSA----LASKATGFPIAKVAAKL- 326 Query: 348 ELALERHAADNA 359 + N Sbjct: 327 AVGFTLDELRND 338 >ref|NP_253100.1| (NC_002516) D-alanine--D-alanine ligase [Pseudomonas aeruginosa] pir||C83094 D-alanine--D-alanine ligase PA4410 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAF26456.1| (U19797) D-alanine:D-alanine ligase B [Pseudomonas aeruginosa] gb|AAG07798.1|AE004856_9 (AE004856) D-alanine--D-alanine ligase [Pseudomonas aeruginosa] Length = 319 Score = 207 bits (527), Expect = 1e-52 Identities = 103/344 (29%), Positives = 154/344 (43%), Gaps = 51/344 (14%) Query: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDP 64 RV ++FGGKSAE EVSL+S ++ ++ + D + + + + + Sbjct: 20 RVAVLFGGKSAEREVSLKSGAMVLQSLLAAGVDAFGIDVGEDLLQRLVE----------- 68 Query: 65 AHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 124 +D F I+HG GEDGS+QG+L A Sbjct: 69 --------------------------------EKIDRAFIILHGRGGEDGSMQGLLECAG 96 Query: 125 LPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFV 184 +P+ GS VLASA MDK TKR+ GL + L + E +LG PL V Sbjct: 97 IPYTGSGVLASALAMDKLRTKRVWLSLGLPTPDYAVLASEDD----CREAAQRLGFPLIV 152 Query: 185 KPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTC 244 KPA++GSS+G++KV ++ A A +D +V+VEQ I G E A L Q Sbjct: 153 KPAHEGSSIGMAKVGGLDELIAAWREAARYDSQVLVEQWISGPEFTVATL---RGQVLPA 209 Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 + FY YD KY+ D VP + +++ + +A LG G R DV Sbjct: 210 IRLGTPHTFYDYDAKYLASDTRY-QVPCGLDEAKERELKELTARACDALGIQGWGRADVM 268 Query: 305 LTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 E + E+NT PG T+ S+ P +A+GL + L+ ++ Sbjct: 269 QDAEGRFWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILA 312 >gb|AAG40564.1|AF062308_2 (AF062308) acetyl-CoA carboxylase 2 [Arabidopsis thaliana] Length = 2375 Score = 207 bits (527), Expect = 1e-52 Identities = 55/379 (14%), Positives = 108/379 (27%), Gaps = 43/379 (11%) Query: 11 GGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALR 70 GGK H S+ A N + A+ R V + G D + Sbjct: 154 GGKRPIH--SILVATNGMAAVKFIR-SVRTWAYETFGSEKAVKLVAMATPEDMRINAEHI 210 Query: 71 PSATSLAQVP----GKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLP 126 A +VP + + + VD ++P G E+ L L+ + Sbjct: 211 RIADQFVEVPGGTNNNNYANVQLIVEMAEVTRVDAVWPG-WGHASENPELPDALKEKGII 269 Query: 127 FVGSDVLASAACMDKDVTKRLLRDAGLNIAPF-----------ITLTRANRHN------- 168 F+G + A DK + + + A + P+ +T Sbjct: 270 FLGPPADSMIALGDKIGSSLIAQAADVPTLPWSGSHVKIPPGRSLVTVPEEIYKKACVYT 329 Query: 169 -ISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLA---FEFDHKVIVEQGI 224 +G P +K + G G+ KV ++++ I++ Sbjct: 330 TEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVAS 389 Query: 225 KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRA 284 + R +E +L + + K I+E V E K+ Sbjct: 390 QSRHLEAQLLCDQYGNVAALHSRD--CSVQRRHQKIIEEGPITVAP-----QETIKKLEQ 442 Query: 285 IAVQAYQTLGCAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLI 343 A + +++ G A V+ + + E E+N + P + + Sbjct: 443 AARRLAKSVNYVGAATVEYLYSMDTGEYYFLELNPRLQVEH----PVTEWIAEVNLPAAQ 498 Query: 344 TRLIELALERHAADNALKT 362 + + + Sbjct: 499 VAVGMG-IPLWQIPEIRRF 516 >ref|NP_174850.1| (NC_003070) acetyl-CoA carboxylase, putative [Arabidopsis thaliana] gb|AAG51252.1|AC025781_4 (AC025781) acetyl-CoA carboxylase, putative; 9984-22276 [Arabidopsis thaliana] Length = 2359 Score = 206 bits (525), Expect = 2e-52 Identities = 55/379 (14%), Positives = 108/379 (27%), Gaps = 43/379 (11%) Query: 11 GGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALR 70 GGK H S+ A N + A+ R V + G D + Sbjct: 134 GGKRPIH--SILVATNGMAAVKFIR-SVRTWAYETFGSEKAVKLVAMATPEDMRINAEHI 190 Query: 71 PSATSLAQVP----GKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLP 126 A +VP + + + VD ++P G E+ L L+ + Sbjct: 191 RIADQFVEVPGGTNNNNYANVQLIVEMAEVTRVDAVWPG-WGHASENPELPDALKEKGII 249 Query: 127 FVGSDVLASAACMDKDVTKRLLRDAGLNIAPF-----------ITLTRANRHN------- 168 F+G + A DK + + + A + P+ +T Sbjct: 250 FLGPPADSMIALGDKIGSSLIAQAADVPTLPWSGSHVKIPPGRSLVTVPEEIYKKACVYT 309 Query: 169 -ISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLA---FEFDHKVIVEQGI 224 +G P +K + G G+ KV ++++ I++ Sbjct: 310 TEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVAS 369 Query: 225 KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRA 284 + R +E +L + + K I+E V E K+ Sbjct: 370 QSRHLEAQLLCDQYGNVAALHSRD--CSVQRRHQKIIEEGPITVAP-----QETIKKLEQ 422 Query: 285 IAVQAYQTLGCAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLI 343 A + +++ G A V+ + + E E+N + P + + Sbjct: 423 AARRLAKSVNYVGAATVEYLYSMDTGEYYFLELNPRLQVEH----PVTEWIAEVNLPAAQ 478 Query: 344 TRLIELALERHAADNALKT 362 + + + Sbjct: 479 VAVGMG-IPLWQIPEIRRF 496 >ref|NP_454677.1| (NC_003198) carbamoyl-phosphate synthase large chain [Salmonella enterica subsp. enterica serovar Typhi] emb|CAD01221.1| (AL627265) carbamoyl-phosphate synthase large chain [Salmonella enterica subsp. enterica serovar Typhi] Length = 1075 Score = 206 bits (525), Expect = 2e-52 Identities = 52/358 (14%), Positives = 114/358 (31%), Gaps = 52/358 (14%) Query: 2 EKLRVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 ++ ++ ++ G G+ E + A A+ + ++ +++ + + D S Sbjct: 558 DRDKIMVLGGGPNRIGQGIEFDYCCVHA---SLALREDGYETIMVNCNPETVSTDYDTS- 613 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L + + G L Sbjct: 614 ------DRLYFEPVTLEDVL---------------EIVRIEKPKGVIVQYGGQTP--LKL 650 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L A +P +G+ A D++ + + L T+T E Sbjct: 651 ARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVT----AIEQAVEKAK 706 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLA--FEFDHKVIVEQGI-KGREIECAV 233 ++G PL V+P+ + V E A D V++++ + E++ Sbjct: 707 EIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDA 766 Query: 234 LGND-NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + + E + + + D A + ++ EI D +R + Sbjct: 767 ICDGEMVLIGGIMEHIEQAGVH-------SGDSACSLPAYTLSQEIQDVMRQQVQKLAFE 819 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 L G+ V + +NEV + E+N T P + +A+G+ + R++ Sbjct: 820 LQVRGLMNVQFAV-KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAARVMAGK 872 Score = 164 bits (416), Expect = 9e-40 Identities = 44/372 (11%), Positives = 113/372 (29%), Gaps = 52/372 (13%) Query: 4 LRVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYL 58 + I+ G++ E + S A A+ + + V+L+ + Sbjct: 8 KSILILGAGPIVIGQACEFDYSGAQA---CKALREEGYRVILVNSNPATIMTD------- 57 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL-- 116 + + + D + P + G + +L Sbjct: 58 --------PEMADATY-------IEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALEL 102 Query: 117 --QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 QG+L + +G+ A D+ ++ GL+ A V Sbjct: 103 ERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGIAH----TMEEALAV 158 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKG-REIEC 231 + +G P ++P+ G + E++ + + ++++++ + G +E E Sbjct: 159 AADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDESLIGWKEYEM 218 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 V+ + N I + + D V + + +R ++ + Sbjct: 219 EVVRDKNDNCIIVCSIEN----FDAMGIHT-GDSITVAPAQTLTDKEYQIMRNASMAVLR 273 Query: 292 TLGC-AGMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 +G G + V + +++ E+N ++ +A+G + +L Sbjct: 274 EIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSA----LASKATGFPIAKVAAKLAVG 329 Query: 350 ALERHAADNALK 361 ++ Sbjct: 330 YTLDELMNDITG 341 >sp|P78992|PYC_PICPA PYRUVATE CARBOXYLASE (PYRUVIC CARBOXYLASE) (PCB) emb|CAA71993.1| (Y11106) pyruvate carboxylase [Pichia pastoris] Length = 1189 Score = 206 bits (525), Expect = 2e-52 Identities = 47/332 (14%), Positives = 96/332 (28%), Gaps = 26/332 (7%) Query: 20 SLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQ- 78 S + +R ++ + + ++ + Y H A + + Sbjct: 16 SSLLGTM-NKILVANRGEIPIRIFRTAHELSMNTVAIYSHEDRLSMHRLKADEAYVIGER 74 Query: 79 ---VPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLAS 135 P + + + V++I P +G E+ + + +VG Sbjct: 75 GQYSPVQAYLAIDEIIKIAVKHNVNMIHPG-YGFCSENSEFARKVEENGILWVGPSDTVI 133 Query: 136 AACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGV 195 A DK + L A + P + + G P+ +K A G G+ Sbjct: 134 DAVGDKVSARNLAYAANVPTVPGTPGPIED--VAQATAFVEEYGYPVIIKAAFGGGGRGM 191 Query: 196 SKVTSEEQYAIAVDLA------FEFDHKVIVEQGIK-GREIECAVLGNDNPQASTCGEIV 248 V + A A + V +E+ + + IE +L ++ E Sbjct: 192 RVVREGDDIEDAFLRASSEAKTAFGNGTVFIERFLDKPKHIEVQLLADNYGNVIHLFERD 251 Query: 249 LTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE 308 K AK + E+ + I AV+ +T + + + Sbjct: 252 --CSVQRRHQKVARNCSAK-----TLPVEVRNAILNDAVKLAKTANYRNAGTAEFLVDSQ 304 Query: 309 NEVVINEINTLPGFTNISMYPKLWQASGLGYT 340 N EIN + + +G+ Sbjct: 305 NRHYFIEINPRIQVEHT----ITEEITGVDIV 332 >sp|P14846|CARB_SALTY CARBAMOYL-PHOSPHATE SYNTHASE LARGE CHAIN (CARBAMOYL-PHOSPHATE SYNTHETASE AMMONIA CHAIN) gb|AAB39256.1| (U81260) carbamoylphosphate synthetase large subunit [Salmonella typhimurium] Length = 1075 Score = 206 bits (524), Expect = 3e-52 Identities = 52/358 (14%), Positives = 114/358 (31%), Gaps = 52/358 (14%) Query: 2 EKLRVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 ++ ++ ++ G G+ E + A A+ + ++ +++ + + D S Sbjct: 558 DRDKIMVLGGGPNRIGQGIEFDYCCVHA---SLALREDGYETIMVNCNPETVSTDYDTS- 613 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L + + G L Sbjct: 614 ------DRLYFEPVTLEDVL---------------EIVRIEKPKGVIVQYGGQTP--LKL 650 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L A +P +G+ A D++ + + L T+T E Sbjct: 651 ARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVT----AIEQAVEKAK 706 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLA--FEFDHKVIVEQGI-KGREIECAV 233 ++G PL V+P+ + V E A D V++++ + E++ Sbjct: 707 EIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDA 766 Query: 234 LGND-NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + + E + + + D A + ++ EI D +R + Sbjct: 767 ICDGEMVLIGGIMEHIEQAGVH-------SGDSACSLPAYTLSQEIQDVMRQQVQKLAFE 819 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 L G+ V + +NEV + E+N T P + +A+G+ + R++ Sbjct: 820 LQVRGLMNVQFAV-KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAARVMAGK 872 Score = 161 bits (408), Expect = 8e-39 Identities = 44/372 (11%), Positives = 113/372 (29%), Gaps = 52/372 (13%) Query: 4 LRVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYL 58 + I+ G++ E + S A A+ + + V+L+ + Sbjct: 8 KSILILGAGPIVIGQACEFDYSGAQA---CKALREEGYRVILVNSNPATIMTD------- 57 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL-- 116 + + + D + P + G + +L Sbjct: 58 --------PEMADATY-------IEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALEL 102 Query: 117 --QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 QG+L + +G+ A D+ ++ GL+ A V Sbjct: 103 ERQGVLEEFGVTMIGATADAGDKAEDRRRFDIAMKKIGLDTARSGIAH----TMEEALAV 158 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKG-REIEC 231 + +G P ++P+ G + E++ + + ++++++ + G +E E Sbjct: 159 AADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDESLIGWKEYEM 218 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 V+ + N I + + D V + + +R ++ + Sbjct: 219 EVVRDKNDNCIIVCSIEN----FDAMGIHT-GDSITVAPAQTLTDKEYQIMRNASMAVLR 273 Query: 292 TLGC-AGMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 +G G + V + +++ E+N ++ +A+G + +L Sbjct: 274 EIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSA----LASKATGFPIAKVAAKLAVG 329 Query: 350 ALERHAADNALK 361 ++ Sbjct: 330 YTLDELMNDITG 341 >ref|NP_174849.1| (NC_003070) acetyl-CoA carboxylase, putative [Arabidopsis thaliana] Length = 2247 Score = 206 bits (524), Expect = 3e-52 Identities = 57/378 (15%), Positives = 109/378 (28%), Gaps = 43/378 (11%) Query: 12 GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRP 71 GK H S+ A N + A+ R V + G D + Sbjct: 33 GKRPIH--SILIANNGMAAVKFIR-SVRTWAYETFGTEKAILLVGMATPEDMRINAEHIR 89 Query: 72 SATSLAQVP----GKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPF 127 A +VP + + + VD ++P G E+ L L + F Sbjct: 90 IADQFVEVPGGTNNNNYANVQLIVEMAEVTRVDAVWPG-WGHASENPELPDALDAKGIIF 148 Query: 128 VGSDVLASAACMDKDVTKRLLRDAGLNIAPFI-----------TLTRANRHN-------- 168 +G + AA DK + + + A + P+ +T Sbjct: 149 LGPPASSMAALGDKIGSSLIAQAADVPTLPWSGSHVKIPPNSNLVTIPEEIYRQACVYTT 208 Query: 169 ISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLA---FEFDHKVIVEQGIK 225 +G P +K + G G+ KV ++++ I++ + Sbjct: 209 EEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQ 268 Query: 226 GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAI 285 R +E +L + + S K I+E V P E K+ Sbjct: 269 SRHLEVQLLCDKHGNVSALHSRD--CSVQRRHQKIIEEGPITVAPP-----ETVKKLEQA 321 Query: 286 AVQAYQTLGCAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLIT 344 A + +++ G A V+ + + E E+N + P + + Sbjct: 322 ARRLAKSVNYVGAATVEYLYSMDTGEYYFLELNPRLQVEH----PVTEWIAEINLPAAQV 377 Query: 345 RLIELALERHAADNALKT 362 + + + Sbjct: 378 AVGMG-IPLWQIPEIRRF 394 >dbj|BAA07012.1| (D34630) acetyl-CoA carboxylase [Arabidopsis thaliana] Length = 2254 Score = 206 bits (524), Expect = 3e-52 Identities = 57/378 (15%), Positives = 109/378 (28%), Gaps = 43/378 (11%) Query: 12 GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRP 71 GK H S+ A N + A+ R V + G D + Sbjct: 33 GKRPIH--SILIANNGMAAVKFIR-SVRTWAYETFGTEKAILLVGMATPEDMRINAEHIR 89 Query: 72 SATSLAQVP----GKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPF 127 A +VP + + + VD ++P G E+ L L + F Sbjct: 90 IADQFVEVPGGTNNNNYANVQLIVEMAEVTRVDAVWPG-WGHASENPELPDALDAKGIIF 148 Query: 128 VGSDVLASAACMDKDVTKRLLRDAGLNIAPFI-----------TLTRANRHN-------- 168 +G + AA DK + + + A + P+ +T Sbjct: 149 LGPPASSMAALGDKIGSSLIAQAADVPTLPWSGSHVKIPPNSNLVTIPEEIYRQACVYTT 208 Query: 169 ISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLA---FEFDHKVIVEQGIK 225 +G P +K + G G+ KV ++++ I++ + Sbjct: 209 EEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQ 268 Query: 226 GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAI 285 R +E +L + + S K I+E V P E K+ Sbjct: 269 SRHLEVQLLCDKHGNVSALHSRD--CSVQRRHQKIIEEGPITVAPP-----ETVKKLEQA 321 Query: 286 AVQAYQTLGCAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLIT 344 A + +++ G A V+ + + E E+N + P + + Sbjct: 322 ARRLAKSVNYVGAATVEYLYSMDTGEYYFLELNPRLQVEH----PVTEWIAEINLPAAQV 377 Query: 345 RLIELALERHAADNALKT 362 + + + Sbjct: 378 AVGMG-IPLWQIPEIRRF 394 >ref|NP_459072.1| (NC_003197) carbamoyl-phosphate synthase, large subunit [Salmonella typhimurium LT2] gb|AAL19031.1| (AE008696) carbamoyl-phosphate synthase, large subunit [Salmonella typhimurium LT2] Length = 1075 Score = 206 bits (524), Expect = 3e-52 Identities = 52/358 (14%), Positives = 114/358 (31%), Gaps = 52/358 (14%) Query: 2 EKLRVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 ++ ++ ++ G G+ E + A A+ + ++ +++ + + D S Sbjct: 558 DRDKIMVLGGGPNRIGQGIEFDYCCVHA---SLALREDGYETIMVNCNPETVSTDYDTS- 613 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L + + G L Sbjct: 614 ------DRLYFEPVTLEDVL---------------EIVRIEKPKGVIVQYGGQTP--LKL 650 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L A +P +G+ A D++ + + L T+T E Sbjct: 651 ARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVT----AIEQAVEKAK 706 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLA--FEFDHKVIVEQGI-KGREIECAV 233 ++G PL V+P+ + V E A D V++++ + E++ Sbjct: 707 EIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDA 766 Query: 234 LGND-NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + + E + + + D A + ++ EI D +R + Sbjct: 767 ICDGEMVLIGGIMEHIEQAGVH-------SGDSACSLPAYTLSQEIQDVMRQQVQKLAFE 819 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 L G+ V + +NEV + E+N T P + +A+G+ + R++ Sbjct: 820 LQVRGLMNVQFAV-KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAARVMAGK 872 Score = 164 bits (416), Expect = 1e-39 Identities = 44/372 (11%), Positives = 113/372 (29%), Gaps = 52/372 (13%) Query: 4 LRVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYL 58 + I+ G++ E + S A A+ + + V+L+ + Sbjct: 8 KSILILGAGPIVIGQACEFDYSGAQA---CKALREEGYRVILVNSNPATIMTD------- 57 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL-- 116 + + + D + P + G + +L Sbjct: 58 --------PEMADATY-------IEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALEL 102 Query: 117 --QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 QG+L + +G+ A D+ ++ GL+ A V Sbjct: 103 ERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGIAH----TMEEALAV 158 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKG-REIEC 231 + +G P ++P+ G + E++ + + ++++++ + G +E E Sbjct: 159 AADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDESLIGWKEYEM 218 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 V+ + N I + + D V + + +R ++ + Sbjct: 219 EVVRDKNDNCIIVCSIEN----FDAMGIHT-GDSITVAPAQTLTDKEYQIMRNASMAVLR 273 Query: 292 TLGC-AGMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 +G G + V + +++ E+N ++ +A+G + +L Sbjct: 274 EIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSA----LASKATGFPIAKVAAKLAVG 329 Query: 350 ALERHAADNALK 361 ++ Sbjct: 330 YTLDELMNDITG 341 >gb|AAF18638.2|AC006228_9 (AC006228) F5J5.19 [Arabidopsis thaliana] Length = 2257 Score = 206 bits (524), Expect = 3e-52 Identities = 57/378 (15%), Positives = 109/378 (28%), Gaps = 43/378 (11%) Query: 12 GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRP 71 GK H S+ A N + A+ R V + G D + Sbjct: 33 GKRPIH--SILIANNGMAAVKFIR-SVRTWAYETFGTEKAILLVGMATPEDMRINAEHIR 89 Query: 72 SATSLAQVP----GKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPF 127 A +VP + + + VD ++P G E+ L L + F Sbjct: 90 IADQFVEVPGGTNNNNYANVQLIVEMAEVTRVDAVWPG-WGHASENPELPDALDAKGIIF 148 Query: 128 VGSDVLASAACMDKDVTKRLLRDAGLNIAPFI-----------TLTRANRHN-------- 168 +G + AA DK + + + A + P+ +T Sbjct: 149 LGPPASSMAALGDKIGSSLIAQAADVPTLPWSGSHVKIPPNSNLVTIPEEIYRQACVYTT 208 Query: 169 ISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLA---FEFDHKVIVEQGIK 225 +G P +K + G G+ KV ++++ I++ + Sbjct: 209 EEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQ 268 Query: 226 GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAI 285 R +E +L + + S K I+E V P E K+ Sbjct: 269 SRHLEVQLLCDKHGNVSALHSRD--CSVQRRHQKIIEEGPITVAPP-----ETVKKLEQA 321 Query: 286 AVQAYQTLGCAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLIT 344 A + +++ G A V+ + + E E+N + P + + Sbjct: 322 ARRLAKSVNYVGAATVEYLYSMDTGEYYFLELNPRLQVEH----PVTEWIAEINLPAAQV 377 Query: 345 RLIELALERHAADNALKT 362 + + + Sbjct: 378 AVGMG-IPLWQIPEIRRF 394 >ref|NP_283414.1| (NC_003116) carbamoyl phosphate synthase large subunit [Neisseria meningitidis Z2491] pir||F81979 carbamoyl-phosphate synthase (glutamine-hydrolyzing) (EC 6.3.5.5) large chain NMA0602 [imported] - Neisseria meningitidis (group A strain Z2491) emb|CAB83892.1| (AL162753) carbamoyl phosphate synthase large subunit [Neisseria meningitidis Z2491] Length = 1071 Score = 206 bits (524), Expect = 3e-52 Identities = 60/357 (16%), Positives = 122/357 (33%), Gaps = 52/357 (14%) Query: 2 EKLRVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 ++ +V I+ G G+ E + A A+ +S F+ +++ + + D S Sbjct: 552 DRKKVMILGGGPNRIGQGIEFDYCCVHA---ALALRESGFETIMVNCNPETVSTDFDTS- 607 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L V ++ +I GQ L Sbjct: 608 ------DRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTPLK-----------------L 644 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L + +G+ + A D++ +++L D GL P + Sbjct: 645 ANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALV----KAE 700 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEF--DHKVIVEQGI-KGREIECAV 233 ++G PL V+P+ + V S EQ + A + D V+++ + E++ Sbjct: 701 EIGYPLVVRPSYVLGGRAMQIVHSAEQLQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDC 760 Query: 234 LGNDNPQAS-TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + + + V + + D + P +++ EI D+IR Sbjct: 761 VSDGKDVVIGGIMQHVEQAGIH-------SGDSGCSLPPYSLSEEIQDEIRRQTKAMAYA 813 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 LG G+ V + + V + E+N T P + +A+G+ + R + Sbjct: 814 LGVVGLMNVQFAV-QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKVGARCMAG 865 Score = 153 bits (386), Expect = 3e-36 Identities = 50/372 (13%), Positives = 114/372 (30%), Gaps = 57/372 (15%) Query: 4 LRVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYL 58 + I+ G++ E + S A A+ + + V+L+ + Sbjct: 8 KSILIIGAGPIVIGQACEFDYSGAQA---CKALREEGYKVILVNSNPATIMTD------- 57 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ- 117 + + D I P + G + +L Sbjct: 58 --------PEMADVTY-------IEPIMWQTVEKIIAKERPDAILPTMGGQTALNCALDL 102 Query: 118 ---GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 G+L N+ +G+ A D+ K + GL+ N + Sbjct: 103 ARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFVCHTMNEALAA---- 158 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGR---EI 229 + ++G P ++P+ G +++++ + F+ ++++EQ + G E+ Sbjct: 159 QEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQSVLGWKEYEM 218 Query: 230 ECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 E NDN E + D V + + +R ++ Sbjct: 219 EVVRDKNDNCIIICSIENFDPMGVHT-------GDSITVAPAQTLTDKEYQIMRNASLAV 271 Query: 290 YQTLGC-AGMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLI 347 + +G G + V + E+++ E+N ++ +A+G + +L Sbjct: 272 LREIGVDTGGSNVQFAVNPENGEMIVIEMNPRVSRSSA----LASKATGFPIAKVAAKL- 326 Query: 348 ELALERHAADNA 359 + N Sbjct: 327 AVGFTLDELRND 338 >ref|NP_276131.1| (NC_000916) carbamoyl-phosphate synthase, large subunit [Methanothermobacter thermautotrophicus] pir||D69233 carbamoyl-phosphate synthase, large subunit - Methanobacterium thermoautotrophicum (strain Delta H) gb|AAB85493.1| (AE000872) carbamoyl-phosphate synthase, large subunit [Methanothermobacter thermautotrophicus] Length = 828 Score = 206 bits (523), Expect = 4e-52 Identities = 52/364 (14%), Positives = 120/364 (32%), Gaps = 53/364 (14%) Query: 2 EKLRVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 ++ +V I+ G+ E + A A+ + ++ +++ + + D S Sbjct: 311 DRRKVLIIGSGPIRIGQGIEFDYCCVHAAM---ALTEDGYETIMVNNNPETVSTDYDIS- 366 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L + + G + ++ Sbjct: 367 ------DKLYFEPLTLEDVL---------------AIIEKEKPEGVVVQFGGQTSINLAV 405 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L A + +G+ + D++ +L G+ AP+ V Sbjct: 406 P--LAEAGVRILGTPHESIDRVEDRERFTEVLNKLGIPQAPYGIAKSFEDA----RAVAE 459 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGI-KGREIECAV 233 ++G P+ V+P+ + V + + + A ++V++ + E++ Sbjct: 460 RIGYPVLVRPSYVLGGRAMEIVYDDVELEEYMREAVRVSPEHPILVDKFLEDAIEVDVDA 519 Query: 234 LGND-NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 L + + E + + + D A V+ P +I +I D I+ + Sbjct: 520 LCDGTDVYIGGIMEHIEEAGVH-------SGDSACVIPPQSIPEDIIDTIKEYTRKLALE 572 Query: 293 LGCAGMARVDVFLTPENEV--VINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 L G+ + + P+++ I E N T P + +A+G+ + RL+ A Sbjct: 573 LEVVGLINIQYAVKPDSDPSVYILEANPRASRT----VPFVSKATGVPLAKMAARLMMGA 628 Query: 351 LERH 354 R Sbjct: 629 KLRD 632 Score = 75.1 bits (183), Expect = 1e-12 Identities = 17/120 (14%), Positives = 40/120 (33%), Gaps = 12/120 (10%) Query: 245 GEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVF 304 E + + + V ++ E N ++R A++ + L G + Sbjct: 1 MENIDPMGIHTGE-------SVVVAPAQTLSDEDNQRLRDAAIKIIRALKIEGGCNIQFA 53 Query: 305 LTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADNALKTT 363 + PE E + E+N ++ +A+G + ++ ++ K T Sbjct: 54 VHPETGEYKVIEVNPRVSRSSA----LASKATGYPIAKIAAKIAVGMTLDEIQNDITKET 109 >gb|AAL02056.1|AF294805_1 (AF294805) acetyl-coenzyme A carboxylase [Setaria italica] Length = 2321 Score = 206 bits (523), Expect = 4e-52 Identities = 54/379 (14%), Positives = 102/379 (26%), Gaps = 43/379 (11%) Query: 11 GGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALR 70 GGK+ H S+ A N + A R V D G D + Sbjct: 127 GGKTPIH--SILVANNGMAAAKFMR-SVRTWANDTFGSEKAIQLIAMATPEDMRINAEHI 183 Query: 71 PSATSLAQVP----GKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLP 126 A +VP + + V ++P G E+ L L + Sbjct: 184 RIADQFVEVPGGTNNNNYANVQLIVEVAERIGVSAVWPG-WGHASENPELPDALTAKGIV 242 Query: 127 FVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK--------- 177 F+G + A DK + + + AG+ + + + Sbjct: 243 FLGPPAASMNALGDKVGSALIAQAAGVPTLSWSGSHVEVPLECCLDAIPEEMYRKACVTT 302 Query: 178 ----------LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLA---FEFDHKVIVEQGI 224 +G P +K + G G+ KV ++++ I+ Sbjct: 303 TEEAVASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMRLAS 362 Query: 225 KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRA 284 + R +E +L + + K I+E V E + Sbjct: 363 QSRHLEVQLLCDQYGNVAALHSRD--CSVQRRHQKIIEEGPVTVAPR-----ETVKALEQ 415 Query: 285 IAVQAYQTLGCAGMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLI 343 A + + +G G A V+ + E E+N + P + + Sbjct: 416 AARRLAKAVGYVGAATVEYLYSMETGEYYFLELNPRLQVEH----PVTEWIAEVNLPAAQ 471 Query: 344 TRLIELALERHAADNALKT 362 + + + Sbjct: 472 VAVGMG-IPLWQIPEIRRF 489 >gb|AAC41645.1| (L27074) acetyl-CoA carboxylase [Arabidopsis thaliana] gb|AAG40563.1|AF062308_1 (AF062308) acetyl-CoA carboxylase 1 [Arabidopsis thaliana] prf||2018327A Ac-CoA carboxylase [Arabidopsis thaliana] Length = 2254 Score = 206 bits (523), Expect = 4e-52 Identities = 56/378 (14%), Positives = 109/378 (28%), Gaps = 43/378 (11%) Query: 12 GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRP 71 GK H S+ A N + A+ R V + G D + Sbjct: 33 GKRPIH--SILIANNGMAAVKFIR-SVRTWAYETFGTEKAILLVGMATPEDMRINAEHIR 89 Query: 72 SATSLAQVP----GKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPF 127 A +VP + + + VD ++P G E+ L L + F Sbjct: 90 IADQFVEVPGGTNNNNYANVQLIVEMAEVTRVDAVWPG-WGHASENPELPDALDAKGIIF 148 Query: 128 VGSDVLASAACMDKDVTKRLLRDAGLNIAPFI-----------TLTRANRHN-------- 168 +G + AA DK + + + A + P+ +T Sbjct: 149 LGPPASSMAALGDKIGSSLIAQAADVPTLPWSGSHVKIPPNSNLVTIPEEIYRQACVYTT 208 Query: 169 ISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLA---FEFDHKVIVEQGIK 225 +G P +K + G G+ KV ++++ I++ + Sbjct: 209 EEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQ 268 Query: 226 GREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAI 285 R +E +L + + S K I+E V P E K+ Sbjct: 269 SRHLEVQLLCDKHGNVSALHSRD--CSVQRRHQKIIEEGPITVAPP-----ETVKKLEQA 321 Query: 286 AVQAYQTLGCAGMARVDVFLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLIT 344 A + +++ G A ++ + + E E+N + P + + Sbjct: 322 ARRLAKSVNYVGAATIEYLYSMDTGEYYFLELNPRLQVEH----PVTEWIAEINLPAAQV 377 Query: 345 RLIELALERHAADNALKT 362 + + + Sbjct: 378 AVGMG-IPLWQIPEIRRF 394 >ref|NP_519642.1| (NC_003295) PROBABLE CARBAMOYL-PHOSPHATE SYNTHASE (LARGE CHAIN) PROTEIN [Ralstonia solanacearum] emb|CAD15223.1| (AL646065) PROBABLE CARBAMOYL-PHOSPHATE SYNTHASE (LARGE CHAIN) PROTEIN [Ralstonia solanacearum] Length = 1081 Score = 205 bits (522), Expect = 5e-52 Identities = 51/360 (14%), Positives = 115/360 (31%), Gaps = 54/360 (15%) Query: 2 EKLRVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 E+ ++ ++ G G+ E + A A+ + ++ +++ + + D S Sbjct: 562 ERKKIMVLGGGPNRIGQGIEFDYCCVHA---ALALREDGYETIMVNCNPETVSTDYDTS- 617 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L + G +L Sbjct: 618 ------DRLYFEPVTLEDVL---------------EIVDKEKPVGVIVQYGGQTPLKLAL 656 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L +P +G+ A D++ ++LL D GL P T ++ Sbjct: 657 D--LEANGVPIIGTTPDMIDAAEDRERFQKLLHDLGLRQPPNRTAR----AEDEALKLAD 710 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFE--FDHKVIVEQGI-KGREIECAV 233 ++G PL V+P+ + V + A + D V++++ + E + Sbjct: 711 EIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDC 770 Query: 234 LGND-NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 L + E + + + D A + P +++ D+++ + Sbjct: 771 LSDGKRVFIGGVMEHIEQAGVH-------SGDSACSLPPYSLSQATVDELKRQTAAMARA 823 Query: 293 LGCAGMARVDVFLTPENE---VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 L G+ V + + V + E+N T P + +A+G+ + R + Sbjct: 824 LNVIGLMNVQFAIQQKGGEDIVYVLEVNPRASRT----VPYVSKATGISLAKVAARCMAG 879 Score = 149 bits (376), Expect = 4e-35 Identities = 50/375 (13%), Positives = 110/375 (29%), Gaps = 56/375 (14%) Query: 4 LR-----VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYL 58 G + G++ E + S A A+ + F VVL+ + ++ Sbjct: 8 KTILIIGAGPIIIGQACEFDYSGAQA---CKALREEGFKVVLVNSNPATIMTDPSTADVT 64 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ- 117 + D I P + G + +L Sbjct: 65 ----------------------YIEPITWEVVERIIAKERPDAILPTMGGQTALNCALDL 102 Query: 118 ---GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 G+L N+ +G+ A D+ K + GL A A++ Sbjct: 103 HRHGVLEKYNVELIGASPEAIDKAEDRQKFKEAMTKIGLGSAKSGIAHSLEEALAVQAQI 162 Query: 175 ESKL---GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGR-- 227 + G P+ ++P+ G + E++ + ++++E+ + G Sbjct: 163 ARETSSGGYPIVIRPSFTLGGTGGGIAYNREEFEDICKRGLDLSPTNELLIEESLLGWKE 222 Query: 228 -EIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIA 286 E+E DN E + + D V + + +R + Sbjct: 223 YEMEVVRDKKDNCIIVCSIENLDPMGIHT-------GDSITVAPAQTLTDKEYQILRNAS 275 Query: 287 VQAYQTLGC-AGMARVDV-FLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLIT 344 + + +G G + V + +++ E+N ++ +A+G + Sbjct: 276 LAVLREIGVDTGGSNVQFSINPEDGRMIVIEMNPRVSRSSA----LASKATGFPIAKVAA 331 Query: 345 RLIELALERHAADNA 359 +L + N Sbjct: 332 KL-AVGYTLDELKNE 345 >gb|AAG30411.1|AF262949_2 (AF262949) pyruvate carboxylase [Mycobacterium smegmatis] Length = 1127 Score = 205 bits (522), Expect = 5e-52 Identities = 56/336 (16%), Positives = 109/336 (31%), Gaps = 24/336 (7%) Query: 26 NIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV--PGKH 83 I + +R ++ + + ++ + Y + H + + +V P + Sbjct: 1 MISKVLVANRGEIAIRAFRAAYEMGIATVAVYPYEDRNSLHRLKADESYQIGEVGHPVRA 60 Query: 84 EHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDV 143 + + D ++P +G L E+ L A + FVG +K Sbjct: 61 YLSVDEIIRVAKHSGADAVYPG-YGFLSENPDLAAKCAEAGITFVGPSAEVLQLTGNKAR 119 Query: 144 TKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQ 203 R AGL + ++ + + + + PLFVK + G G+ +VT E Sbjct: 120 AIAAARAAGLPV---LSSSEPSSSVDELMAAAADMEFPLFVKAVSGGGGRGMRRVTDRES 176 Query: 204 YAIAVDLA------FEFDHKVIVEQGI-KGREIECAVLGNDNPQASTCGEIVLTSDFYAY 256 A A++ A D V +EQ + R IE +L + E Sbjct: 177 LAEAIEAASREAESAFGDASVYLEQAVLNPRHIEVQILADGAGNVMHLFERD--CSVQRR 234 Query: 257 DTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEI 316 K ++ ++ E+ +I A AV + +G + V+ L V E Sbjct: 235 HQKVVEL-----APAPNLSDELRQQICADAVAFARQIGYSCAGTVEFLLDERGHHVFIEC 289 Query: 317 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 N + + + + R+ Sbjct: 290 NPRIQVEHT----VTEEITDVDLVSSQLRIAAGETL 321 >pir||T06161 acetyl-CoA carboxylase (EC 6.4.1.2) - wheat gb|AAC39330.1| (AF029895) acetyl-coenzyme A carboxylase [Triticum aestivum] Length = 2311 Score = 205 bits (521), Expect = 7e-52 Identities = 54/379 (14%), Positives = 101/379 (26%), Gaps = 43/379 (11%) Query: 11 GGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALR 70 GGK+ H S+ A N + A R V + G D + Sbjct: 127 GGKTPIH--SVLVANNGMAAAKFMR-SVRTWANETFGSEKAIQLIAMATPEDMRINAEHI 183 Query: 71 PSATSLAQVP----GKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLP 126 A +VP + + V ++P G E+ L L + Sbjct: 184 RIADQFVEVPGGTNNNNYANVQLIVEIAVRTGVSAVWPG-WGHASENPELPDALNANGIV 242 Query: 127 FVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHN------------------ 168 F+G + A DK + + + AG+ P+ Sbjct: 243 FLGPPSSSMNALGDKVGSALIAQAAGVPTLPWSGSQVEIPLEVCLDSIPAEMYRKACVST 302 Query: 169 -ISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLA---FEFDHKVIVEQGI 224 +G P +K + G G+ KV +++ I+ Sbjct: 303 TEEALASCQMIGYPAMIKASWGGGGKGIRKVNNDDDVRALFKQVQGEVPGSPIFIMRLAS 362 Query: 225 KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRA 284 + R +E +L + + K I+E V E ++ Sbjct: 363 QSRHLEVQLLCDQYGNVAALHSRD--CSVQRRHQKIIEEGPVTVAPR-----ETVKELEQ 415 Query: 285 IAVQAYQTLGCAGMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLI 343 A + + +G G A V+ + E E+N + P + + Sbjct: 416 AARRLAKAVGYVGAATVEYLYSMETGEYYFLELNPRLQVEH----PVTEWIAEVNLPAAQ 471 Query: 344 TRLIELALERHAADNALKT 362 + + + Sbjct: 472 VAVGMG-IPLWQVPEIRRF 489 >sp|Q9TTS3|COA1_BOVIN ACETYL-COA CARBOXYLASE 1 (ACC-ALPHA) [INCLUDES: BIOTIN CARBOXYLASE ] emb|CAB56826.1| (AJ132890) acetyl-CoA-carboxylase [Bos taurus] Length = 2346 Score = 204 bits (520), Expect = 8e-52 Identities = 50/386 (12%), Positives = 116/386 (29%), Gaps = 55/386 (14%) Query: 10 FGGKSAEHEVSLQS----AKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 FGG +V + + A + +I + ++ + ++ ++ + D A Sbjct: 112 FGGNKVIEKVLIANNGIAAVKCMRSIRRWSYE--MFRNERAIRFV-----VMVTPEDLKA 164 Query: 66 HIALRPSATSLAQVP----GKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 + A VP + + + V ++ G E+ L +L Sbjct: 165 NAEYIKMADHYVPVPGGPNNNNYANVELILDIAKRIPVQAVWAG-WGHASENPKLPELLL 223 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFI----------------TLTRAN 165 + F+G A A DK + + + AG+ P+ L Sbjct: 224 KNGIAFMGPPSQAMWALGDKIASSIVAQTAGIPTLPWSGSGLCVDWHENDFSKRILNVPQ 283 Query: 166 RHNI--------SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA---IAVDLAFEF 214 + ++G P+ +K + G G+ KV + + + V Sbjct: 284 ELYEKGYVKDVDDGLKAAEEVGYPVMIKASEGGGGKGIRKVNNADDFPNLFRQVQAEVPG 343 Query: 215 DHKVIVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAI 274 ++ + R +E +L + A + K I+E A Sbjct: 344 SPIFVMRLAKQSRHLEVQILADQYGNAISLFGRD--CSVQRRHQKIIEE-----APAAIA 396 Query: 275 APEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQA 334 P + + + AV+ + +G V+ + + E+N + P Sbjct: 397 TPAVFEHMEQCAVKLARMVGYVSAGTVEYLYSQDGSFYFLELNPRLQVEH----PCTEMV 452 Query: 335 SGLGYTDLITRLIELALERHAADNAL 360 + + ++ + + + + Sbjct: 453 ADVNLPAAQLQI-AMGIPLYRIKDIR 477 >sp|Q28559|COA1_SHEEP ACETYL-COA CARBOXYLASE 1 (ACC-ALPHA) [INCLUDES: BIOTIN CARBOXYLASE ] emb|CAA56352.1| (X80045) acetyl-CoA carboxylase [Ovis aries] Length = 2346 Score = 204 bits (520), Expect = 9e-52 Identities = 50/386 (12%), Positives = 116/386 (29%), Gaps = 55/386 (14%) Query: 10 FGGKSAEHEVSLQS----AKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 FGG +V + + A + +I + ++ + ++ ++ + D A Sbjct: 112 FGGNKVIEKVLIANNGIAAVKCMRSIRRWSYE--MFRNERAIRFV-----VMVTPEDLKA 164 Query: 66 HIALRPSATSLAQVP----GKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 + A VP + + + V ++ G E+ L +L Sbjct: 165 NAEYIKMADHYVPVPGGPNNNNYANVELILDIARRIPVQAVWAG-WGHASENPKLPELLL 223 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFI----------------TLTRAN 165 + F+G A A DK + + + AG+ P+ L Sbjct: 224 KNGIAFMGPPSQAMWALGDKIASSIVAQTAGIPTLPWSGSGLCVDWHENDFSKRILNVPQ 283 Query: 166 RHNI--------SFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYA---IAVDLAFEF 214 + ++G P+ +K + G G+ KV + + + V Sbjct: 284 ELYEKGYVKDVDDGLKAAEEVGYPVMIKASEGGGGKGIRKVNNADDFPNLFRQVQAEVPG 343 Query: 215 DHKVIVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAI 274 ++ + R +E +L + A + K I+E A Sbjct: 344 SPIFVMRLAKQSRHLEVQILADQYGNAISLFGRD--CSVQRRHQKIIEE-----APAAIA 396 Query: 275 APEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQA 334 P + + + AV+ + +G V+ + + E+N + P Sbjct: 397 TPAVFEHMEQCAVKLARMVGYVSAGTVEYLYSQDGSFYFLELNPRLQVEH----PCTEMV 452 Query: 335 SGLGYTDLITRLIELALERHAADNAL 360 + + ++ + + + + Sbjct: 453 ADVNLPAAQLQI-AMGIPLYRIKDIR 477 >gb|AAF16526.1|AF191301_2 (AF191301) ADP-forming, carbamate-phosphorylating [Medicago sativa] Length = 1072 Score = 204 bits (520), Expect = 9e-52 Identities = 48/357 (13%), Positives = 114/357 (31%), Gaps = 52/357 (14%) Query: 2 EKLRVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 +K ++ ++ G G+ E + A A+ + ++ +++ + + D S Sbjct: 557 DKKKILVIGGGPNRIGQGIEFDYCCVHA---ALAMREDGYETIMVNCNPETVSTDYDTS- 612 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D L V + G L Sbjct: 613 ------DRLFFEPVTLEDVLEIVH---------------KEKPVGVIVQFGGQTP--LKL 649 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L +P +G+ A D++ ++++ GL P + ++ Sbjct: 650 ARALEAEGVPIIGTSPDAIDKAEDRERFQQMINKLGLLQPPNAIVRSLEEALLA----AD 705 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEF--DHKVIVEQGI-KGREIECAV 233 K+G PL V+P+ + V E++ + A + D V+++ + E++ Sbjct: 706 KVGYPLVVRPSYVLGGRAMEIVYKEDELRTYMRTAVQVSEDAPVLLDHFLNNAIEVDIDS 765 Query: 234 LGND-NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + + + + + D A + P ++ ++ D +R I + Sbjct: 766 VSDGKQVVIGGIMQHIEQCGVH-------SGDSACSLPPYSLPADVQDDMREIVKKMAIE 818 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 LG G+ + + ++ + E+N T P + + G+ + R Sbjct: 819 LGVIGLMNTQLAY-QDGKIYVIEVNPRASRT----VPFVSKCIGVSLAKVAARCQAG 870 Score = 160 bits (404), Expect = 3e-38 Identities = 49/374 (13%), Positives = 117/374 (31%), Gaps = 56/374 (14%) Query: 6 VGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLN 60 + I+ G++ E + S A A+ + + V+L+ + Sbjct: 10 ILILGAGPIVIGQACEFDYSGAQA---CKALREEGYRVILVNSNPATIMTD--------- 57 Query: 61 ADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ--- 117 A+ + + DVI P + G + +L Sbjct: 58 ------PAMADATY-------IEPIEWQTVAKIIEKERPDVILPTMGGQTALNCALALAK 104 Query: 118 -GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 G+L N+ +G+ A D+++ + ++ GL+ A + + E Sbjct: 105 NGVLEKYNVELIGAKEEAINMAEDRNLFDQAMKRIGLSCARAKIVHTLEEAKEAPKEF-- 162 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGR---EIEC 231 G P ++P+ G + +++ + ++++++ + G E+E Sbjct: 163 --GFPCIIRPSFTMGGSGGGIAYNWDEFEEICTRGLDLSPTNELLIDESLLGWKEYEMEV 220 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 NDN E + D V + + +R ++ + Sbjct: 221 VRDKNDNCIIVCSIENFDPMGVHT-------GDSITVAPAQTLTDKEYQIMRNASIAVLR 273 Query: 292 TLGC-AGMARVDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 +G G + V + P + +V+ E+N ++ +A+G + +L Sbjct: 274 EIGVETGGSNVQFAVNPVDGRMVVIEMNPRVSRSSA----LASKATGFPIAKIAAKLAVG 329 Query: 350 ALERHAADNALKTT 363 ++ Sbjct: 330 YTLDELKNDITGGA 343 >ref|NP_371727.1| (NC_002758) carbamoyl-phosphate synthase large chain [Staphylococcus aureus subsp. aureus Mu50] ref|NP_374319.1| (NC_002745) carbamoyl-phosphate synthase large chain [Staphylococcus aureus subsp. aureus N315] dbj|BAB42298.1| (AP003132) carbamoyl-phosphate synthase large chain [Staphylococcus aureus subsp. aureus N315] dbj|BAB57365.1| (AP003361) carbamoyl-phosphate synthase large chain [Staphylococcus aureus subsp. aureus Mu50] Length = 1057 Score = 204 bits (520), Expect = 9e-52 Identities = 46/359 (12%), Positives = 113/359 (30%), Gaps = 51/359 (14%) Query: 2 EKLRVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 +K ++ ++ G+ E + + A AI K+ ++ +++ + + S Sbjct: 550 DKEKILVLGSGPIRIGQGVEFDYATVHAVW---AIQKAGYEAIIVNNNPETVSTDFSIS- 605 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + + L + G + L Sbjct: 606 ------DKLYFEPLTEEDVMN---------------IINLEKPKGVVVQFGGQTAIN--L 642 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L + +G+ + D+ + LLR + + T + + Sbjct: 643 ADKLAKHGVKILGTSLENLNRAEDRKEFEALLRKINVPQPQGKSATSPEEALAN----AA 698 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVL 234 ++G P+ V+P+ + V ++++ + A + V+V++ + G+EIE + Sbjct: 699 EIGYPVVVRPSYVLGGRAMEIVDNDKELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAI 758 Query: 235 GNDNPQ-ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 + E + + + D V P + + + ++ + L Sbjct: 759 CDGETVIIPGIMEHIERAGVH-------SGDSIAVYPPQTLTEDELATLEDYTIKLAKGL 811 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALE 352 G+ + + + V + E+N T P L + + + L R I Sbjct: 812 NIIGLINIQFVIAHDG-VYVLEVNPRSSRT----VPFLSKITDIPMAQLAMRAIIGEKL 865 Score = 175 bits (445), Expect = 4e-43 Identities = 52/375 (13%), Positives = 124/375 (32%), Gaps = 55/375 (14%) Query: 4 LRVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYL 58 + ++ G++AE + + A+ + + V+L+ + + + Sbjct: 8 KTILVIGSGPIIIGQAAEFDYA---GTQACLALKEEGYRVILVNSNPATIMTDKEIA--- 61 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ- 117 D + P + G G + ++Q Sbjct: 62 -------------------DKVYIEPLTHDFIARIIRKEQPDALLPTLGGQTGLNMAIQL 102 Query: 118 ---GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 G+L+ N+ +G+++ + D+++ + L+ D + + + + + Sbjct: 103 HESGVLQDNNVQLLGTELTSIQQAEDREMFRTLMNDLNVPVPESDIVNTVEQAF----KF 158 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGR---EI 229 + ++G PL V+PA G ++E+ V + + ++E+ I G E Sbjct: 159 KEQVGYPLIVRPAFTMGGTGGGICHNDEELHEIVSNGLHYSPATQCLLEKSIAGFKEIEY 218 Query: 230 ECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQA 289 E NDN E + + D V ++ +R ++++ Sbjct: 219 EVMRDKNDNAIVVCNMENIDPVGIHT-------GDSIVVAPSQTLSDVEYQMLRDVSLKV 271 Query: 290 YQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 + LG G V + L P + + I E+N ++ +A+G L ++ Sbjct: 272 IRALGIEGGCNVQLALDPHSFDYYIIEVNPRVSRSSA----LASKATGYPIAKLAAKIAV 327 Query: 349 LALERHAADNALKTT 363 + T+ Sbjct: 328 GLTLDEMLNPITGTS 342 >ref|NP_225100.1| (NC_000922) Muramate-Ala Ligase & D-Ala-D-Ala Ligase [Chlamydophila pneumoniae CWL029] ref|NP_300962.1| (NC_002491) muramate-Ala ligase/D-Ala-D-Ala ligase [Chlamydophila pneumoniae J138] ref|NP_445498.1| (NC_002179) UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase [Chlamydophila pneumoniae AR39] sp|Q9Z701|MUDD_CHLPN MURC/DDL BIFUNCTIONAL ENZYME [INCLUDES: UDP-N-ACETYLMURAMATE--ALANINE LIGASE (UDP-N-ACETYLMURAMOYL-L-ALANINE SYNTHETASE); D-ALANINE--D-ALANINE LIGASE (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE)] pir||D72022 UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase CP0961 [imported] - Chlamydophila pneumoniae (strains CWL029 and AR39) gb|AAD19043.1| (AE001670) Muramate-Ala Ligase & D-Ala-D-Ala Ligase [Chlamydophila pneumoniae CWL029] gb|AAF38741.1| (AE002254) UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase [Chlamydophila pneumoniae AR39] dbj|BAA99113.1| (AP002548) muramate-Ala ligase/D-Ala-D-Ala ligase [Chlamydophila pneumoniae J138] Length = 809 Score = 204 bits (519), Expect = 1e-51 Identities = 100/368 (27%), Positives = 165/368 (44%), Gaps = 28/368 (7%) Query: 2 EKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNA 61 +KL +G+V GGKS EH++SL SA+++ I +DV I++QG W Sbjct: 450 KKLSIGLVCGGKSCEHDISLLSAQHVSKYISPEFYDVSYFIINRQGLWRTGK-------- 501 Query: 62 DDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121 + + G L VD +FP++HG GEDG++QG Sbjct: 502 ---------DFPHLIEETQGDSPLSSE---IASALAKVDCLFPVLHGPFGEDGTIQGFFE 549 Query: 122 VANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLT---RANRHNISFAEVESKL 178 + P+ G + +A MDK +TKR+ G+ + P+ L + + Sbjct: 550 ILGKPYAGPSLSLAATAMDKLLTKRIASAVGVPVVPYQPLNLCFWKRNPELCIQNLIETF 609 Query: 179 GLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKVIVEQ-GIKGREIECAVLGND 237 P+ VK A+ GSS+G+ V +E+ + AF +D V VE+ + REIE + +G+ Sbjct: 610 SFPMIVKTAHLGSSIGIFLVRDKEELQEKISEAFLYDTDVFVEESRLGSREIEVSCIGHS 669 Query: 238 NPQASTCG--EIVLTSDFYAYDTKYI--DEDGAKVVVPAAIAPEINDKIRAIAVQAYQTL 293 + G E S F Y KY D AK+ ++ E D +R +A + Y+ + Sbjct: 670 SSWYCMAGPNERCGASGFIDYQEKYGFDGIDCAKISFDLQLSQESLDCVRELAERVYRAM 729 Query: 294 GCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353 G AR+D FL E ++E+N +PG T S + + + +G ++ I AL + Sbjct: 730 QGKGSARIDFFLDEEGNYWLSEVNPIPGMTAASPFLQAFVHAGWTQEQIVDHFIIDALHK 789 Query: 354 HAADNALK 361 ++ Sbjct: 790 FDKQQTIE 797 >pir||T02235 acetyl-CoA carboxylase (EC 6.4.1.2) - maize gb|AAA80214.1| (U19183) acetyl-coenzyme A carboxylase [Zea mays] Length = 2325 Score = 204 bits (519), Expect = 1e-51 Identities = 52/379 (13%), Positives = 102/379 (26%), Gaps = 43/379 (11%) Query: 11 GGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALR 70 GGK+ H S+ A N + A R V D G D + Sbjct: 127 GGKTPIH--SILVANNGMAAAKFMR-SVRTWANDTFGSEKAIQLIAMATPEDMRINAEHI 183 Query: 71 PSATSLAQVP----GKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLP 126 A +VP + + V ++P G E+ L L + Sbjct: 184 RIADQFVEVPGGTNNNNYANVQLIVGMAQKLGVSAVWPG-WGHASENPELPDALTAKGIV 242 Query: 127 FVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESK--------- 177 F+G + A DK + + + AG+ + + + Sbjct: 243 FLGPPASSMNALGDKVGSALIAQAAGVPTLAWSGSHVEVPLECCLDAIPEEMYRKACVTT 302 Query: 178 ----------LGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLA---FEFDHKVIVEQGI 224 +G P +K + G G+ KV ++++ ++ Sbjct: 303 TEEAVASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFVMRLAS 362 Query: 225 KGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRA 284 + R +E +L + + K I+E V E + Sbjct: 363 QSRHLEVQLLCDQYGNVAALHSRD--CSVQRRHQKIIEEGPVTVAPR-----ETVKALEQ 415 Query: 285 IAVQAYQTLGCAGMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLI 343 A + + +G G A V+ + + E+N + P + + Sbjct: 416 AARRLAKAVGYVGAATVEYLYSMETGDYYFLELNPRLQVEH----PVTEWIAEVNLPAAQ 471 Query: 344 TRLIELALERHAADNALKT 362 + + + Sbjct: 472 VAVGMG-IPLWQIPEIRRF 489 >pdb|1CE8|A Chain A, Carbamoyl Phosphate Synthetase From Escherichis Coli With Complexed With The Allosteric Ligand Imp pdb|1CE8|C Chain C, Carbamoyl Phosphate Synthetase From Escherichis Coli With Complexed With The Allosteric Ligand Imp pdb|1CE8|E Chain E, Carbamoyl Phosphate Synthetase From Escherichis Coli With Complexed With The Allosteric Ligand Imp pdb|1CE8|G Chain G, Carbamoyl Phosphate Synthetase From Escherichis Coli With Complexed With The Allosteric Ligand Imp Length = 1073 Score = 204 bits (519), Expect = 1e-51 Identities = 52/358 (14%), Positives = 112/358 (30%), Gaps = 52/358 (14%) Query: 2 EKLRVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 ++ ++ ++ G G+ E + A A+ + ++ +++ + + D S Sbjct: 558 DREKIMVLGGGPNRIGQGIEFDYCCVHA---SLALREDGYETIMVNCNPETVSTDYDTS- 613 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L + + G L Sbjct: 614 ------DRLYFEPVTLEDVL---------------EIVRIEKPKGVIVQYGGQTP--LKL 650 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L A +P +G+ A D++ + + L T+T E Sbjct: 651 ARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVT----AIEMAVEKAK 706 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLA--FEFDHKVIVEQGI-KGREIECAV 233 ++G PL V+P+ + V E A D V+++ + E++ Sbjct: 707 EIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDA 766 Query: 234 LGND-NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + + E + + + D A + ++ EI D +R + Sbjct: 767 ICDGEMVLIGGIMEHIEQAGVH-------SGDSACSLPAYTLSQEIQDVMRQQVQKLAFE 819 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 L G+ V + NEV + E+N T P + +A+G+ + R++ Sbjct: 820 LQVRGLMNVQFAV-KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAARVMAGK 872 Score = 160 bits (404), Expect = 2e-38 Identities = 43/372 (11%), Positives = 110/372 (29%), Gaps = 52/372 (13%) Query: 4 LRVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYL 58 + I+ G++ E + S A A+ + + V+ + + Sbjct: 8 KSILILGAGPIVIGQACEFDYSGAQA---CKALREEGYRVINVNSNPATIMTD------- 57 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL-- 116 + + + D + P + G + +L Sbjct: 58 --------PEMADATY-------IEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALEL 102 Query: 117 --QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 QG+L + +G+ A D+ ++ GL A V Sbjct: 103 ERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAH----TMEEALAV 158 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKG-REIEC 231 + +G P ++P+ G + E++ + ++++++ + G +E E Sbjct: 159 AADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEM 218 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 V+ + N I + + D V + + +R ++ + Sbjct: 219 EVVRDKNDNCIIVCSIEN----FDAMGIHT-GDSITVAPAQTLTDKEYQIMRNASMAVLR 273 Query: 292 TLGC-AGMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 +G G + V + +++ E+N ++ +A+G + +L Sbjct: 274 EIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSA----LASKATGFPIAKVAAKLAVG 329 Query: 350 ALERHAADNALK 361 ++ Sbjct: 330 YTLDELMNDITG 341 >ref|NP_285727.1| (NC_002655) carbamoyl-phosphate synthase large subunit [Escherichia coli O157:H7 EDL933] ref|NP_308063.1| (NC_002695) carbamoyl-phosphate synthase large subunit [Escherichia coli O157:H7] gb|AAG54335.1|AE005180_2 (AE005180) carbamoyl-phosphate synthase large subunit [Escherichia coli O157:H7 EDL933] dbj|BAB33459.1| (AP002550) carbamoyl-phosphate synthase large subunit [Escherichia coli O157:H7] Length = 1073 Score = 204 bits (519), Expect = 1e-51 Identities = 52/358 (14%), Positives = 112/358 (30%), Gaps = 52/358 (14%) Query: 2 EKLRVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 ++ ++ ++ G G+ E + A A+ + ++ +++ + + D S Sbjct: 558 DREKIMVLGGGPNRIGQGIEFDYCCVHA---SLALREDGYETIMVNCNPETVSTDYDTS- 613 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L + + G L Sbjct: 614 ------DRLYFEPVTLEDVL---------------EIVRIEKPKGVIVQYGGQTP--LKL 650 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L A +P +G+ A D++ + + L T+T E Sbjct: 651 ARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVT----AIEMAVEKAK 706 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLA--FEFDHKVIVEQGI-KGREIECAV 233 ++G PL V+P+ + V E A D V+++ + E++ Sbjct: 707 EIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDA 766 Query: 234 LGND-NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + + E + + + D A + ++ EI D +R + Sbjct: 767 ICDGEMVLIGGIMEHIEQAGVH-------SGDSACSLPAYTLSQEIQDVMRQQVQKLAFE 819 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 L G+ V + NEV + E+N T P + +A+G+ + R++ Sbjct: 820 LQVRGLMNVQFAV-KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAARVMAGK 872 Score = 162 bits (410), Expect = 4e-39 Identities = 44/372 (11%), Positives = 111/372 (29%), Gaps = 52/372 (13%) Query: 4 LRVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYL 58 + I+ G++ E + S A A+ + + V+L+ + Sbjct: 8 KSILILGAGPIVIGQACEFDYSGAQA---CKALREEGYRVILVNSNPATIMTD------- 57 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL-- 116 + + + D + P + G + +L Sbjct: 58 --------PEMADATY-------IEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALEL 102 Query: 117 --QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 QG+L + +G+ A D+ ++ GL A V Sbjct: 103 ERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAH----TMEEALAV 158 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKG-REIEC 231 + +G P ++P+ G + E++ + ++++++ + G +E E Sbjct: 159 AADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEM 218 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 V+ + N I + + D V + + +R ++ + Sbjct: 219 EVVRDKNDNCIIVCSIEN----FDAMGIHT-GDSITVAPAQTLTDKEYQIMRNASMAVLR 273 Query: 292 TLGC-AGMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 +G G + V + +++ E+N ++ +A+G + +L Sbjct: 274 EIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSA----LASKATGFPIAKVAAKLAVG 329 Query: 350 ALERHAADNALK 361 ++ Sbjct: 330 YTLDELMNDITG 341 >ref|NP_414574.1| (NC_000913) carbamoyl-phosphate synthase large subunit [Escherichia coli K12] sp|P00968|CARB_ECOLI CARBAMOYL-PHOSPHATE SYNTHASE LARGE CHAIN (CARBAMOYL-PHOSPHATE SYNTHETASE AMMONIA CHAIN) pir||SYECCP carbamoyl-phosphate synthase (glutamine-hydrolyzing) (EC 6.3.5.5) large chain [validated] - Escherichia coli pdb|1BXR|A Chain A, Structure Of Carbamoyl Phosphate Synthetase Complexed With The Atp Analog Amppnp pdb|1BXR|C Chain C, Structure Of Carbamoyl Phosphate Synthetase Complexed With The Atp Analog Amppnp pdb|1BXR|E Chain E, Structure Of Carbamoyl Phosphate Synthetase Complexed With The Atp Analog Amppnp pdb|1BXR|G Chain G, Structure Of Carbamoyl Phosphate Synthetase Complexed With The Atp Analog Amppnp pdb|1JDB|K Chain K, Carbamoyl Phosphate Synthetase From Escherichia Coli pdb|1CS0|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase Complexed At Cys269 In The Small Subunit With The Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde pdb|1CS0|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase Complexed At Cys269 In The Small Subunit With The Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde pdb|1CS0|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase Complexed At Cys269 In The Small Subunit With The Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde pdb|1CS0|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase Complexed At Cys269 In The Small Subunit With The Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde pdb|1C30|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269s pdb|1C30|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269s pdb|1C30|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269s pdb|1C30|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269s pdb|1C3O|A Chain A, Crystal Structure Of The Carbamoyl Phosphate Synthetase: Small Subunit Mutant C269s With Bound Glutamine pdb|1C3O|C Chain C, Crystal Structure Of The Carbamoyl Phosphate Synthetase: Small Subunit Mutant C269s With Bound Glutamine pdb|1C3O|E Chain E, Crystal Structure Of The Carbamoyl Phosphate Synthetase: Small Subunit Mutant C269s With Bound Glutamine pdb|1C3O|G Chain G, Crystal Structure Of The Carbamoyl Phosphate Synthetase: Small Subunit Mutant C269s With Bound Glutamine pdb|1JDB|B Chain B, Carbamoyl Phosphate Synthetase From Escherichia Coli pdb|1JDB|E Chain E, Carbamoyl Phosphate Synthetase From Escherichia Coli pdb|1JDB|H Chain H, Carbamoyl Phosphate Synthetase From Escherichia Coli emb|CAA24744.1| (V01500) carB reading frame [Escherichia coli] gb|AAA23539.1| (J01597) carbamoyl-phosphate synthetase subunit B [Escherichia coli] dbj|BAA01311.1| (D10483) carbamoyl-phosphate synthase large chain [Escherichia coli] gb|AAC73144.1| (AE000113) carbamoyl-phosphate synthase large subunit [Escherichia coli K12] Length = 1073 Score = 204 bits (519), Expect = 1e-51 Identities = 52/358 (14%), Positives = 112/358 (30%), Gaps = 52/358 (14%) Query: 2 EKLRVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 ++ ++ ++ G G+ E + A A+ + ++ +++ + + D S Sbjct: 558 DREKIMVLGGGPNRIGQGIEFDYCCVHA---SLALREDGYETIMVNCNPETVSTDYDTS- 613 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L + + G L Sbjct: 614 ------DRLYFEPVTLEDVL---------------EIVRIEKPKGVIVQYGGQTP--LKL 650 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L A +P +G+ A D++ + + L T+T E Sbjct: 651 ARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVT----AIEMAVEKAK 706 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLA--FEFDHKVIVEQGI-KGREIECAV 233 ++G PL V+P+ + V E A D V+++ + E++ Sbjct: 707 EIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDA 766 Query: 234 LGND-NPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + + E + + + D A + ++ EI D +R + Sbjct: 767 ICDGEMVLIGGIMEHIEQAGVH-------SGDSACSLPAYTLSQEIQDVMRQQVQKLAFE 819 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 L G+ V + NEV + E+N T P + +A+G+ + R++ Sbjct: 820 LQVRGLMNVQFAV-KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAARVMAGK 872 Score = 162 bits (410), Expect = 4e-39 Identities = 44/372 (11%), Positives = 111/372 (29%), Gaps = 52/372 (13%) Query: 4 LRVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYL 58 + I+ G++ E + S A A+ + + V+L+ + Sbjct: 8 KSILILGAGPIVIGQACEFDYSGAQA---CKALREEGYRVILVNSNPATIMTD------- 57 Query: 59 LNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL-- 116 + + + D + P + G + +L Sbjct: 58 --------PEMADATY-------IEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALEL 102 Query: 117 --QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEV 174 QG+L + +G+ A D+ ++ GL A V Sbjct: 103 ERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAH----TMEEALAV 158 Query: 175 ESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKG-REIEC 231 + +G P ++P+ G + E++ + ++++++ + G +E E Sbjct: 159 AADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEM 218 Query: 232 AVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQ 291 V+ + N I + + D V + + +R ++ + Sbjct: 219 EVVRDKNDNCIIVCSIEN----FDAMGIHT-GDSITVAPAQTLTDKEYQIMRNASMAVLR 273 Query: 292 TLGC-AGMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIEL 349 +G G + V + +++ E+N ++ +A+G + +L Sbjct: 274 EIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSA----LASKATGFPIAKVAAKLAVG 329 Query: 350 ALERHAADNALK 361 ++ Sbjct: 330 YTLDELMNDITG 341 >ref|NP_246444.1| (NC_002663) CarB [Pasteurella multocida] gb|AAK03589.1| (AE006187) CarB [Pasteurella multocida] Length = 1068 Score = 204 bits (519), Expect = 1e-51 Identities = 52/358 (14%), Positives = 123/358 (33%), Gaps = 52/358 (14%) Query: 2 EKLRVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASN 56 +K ++ I+ G G+ E + A A+ ++ F+ +++ + + D S Sbjct: 552 DKKKIMILGGGPNRIGQGIEFDYCCVHA---SLALREAGFETIMVNCNPETVSTDFDTS- 607 Query: 57 YLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116 D + L + + H +I GQ L Sbjct: 608 ------DRLYFEPLTLEDVLEIIHVEKPHGVIVHYGGQTPLK-----------------L 644 Query: 117 QGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVES 176 L + +G+ + A D++ +++L L T A ++ Sbjct: 645 ANDLHANGVNIIGTSADSIDAAEDRERFQQILHKLHLKQPTNRTARNAEEAV----KLAE 700 Query: 177 KLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLA--FEFDHKVIVEQGI-KGREIECAV 233 ++G PL V+P+ + V + ++ + A D ++++ + E++ Sbjct: 701 EVGYPLVVRPSYVLGGRAMQIVYNVDELQRYMREAVSVSNDSPILLDHFLNNAIEVDVDC 760 Query: 234 LGNDNPQAS-TCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQT 292 + + + + + + D A + P +++ E+ D+IR + Sbjct: 761 ICDGAEVVIGGIMQHIEQAGIH-------SGDSACSLPPYSLSQEVQDEIRRQTAEMAFA 813 Query: 293 LGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 LG G+ V + + + + E+N T P + +A+G + R++ Sbjct: 814 LGVKGLMNVQFAV-QDGVIYVLEVNPRASRT----VPFVSKATGRPLAKIAARVMAGE 866 Score = 154 bits (388), Expect = 2e-36 Identities = 51/371 (13%), Positives = 117/371 (30%), Gaps = 57/371 (15%) Query: 5 RVGIVFG-----GKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLL 59 + I+ G++ E + S A A+ + + VVL+ + D ++ Sbjct: 9 TILIIGAGPIVIGQACEFDYSGAQA---CKALREEGYKVVLVNSNPATIMTDPDMADVT- 64 Query: 60 NADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQ-- 117 + + D I P + G + +L Sbjct: 65 ---------------------YIEPIEWRTVEKIIEKERPDAILPTMGGQTALNCALDLS 103 Query: 118 --GMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVE 175 G+L+ N+ +G+ A D+ K + GL+ + Sbjct: 104 KNGVLKKYNVELIGAKEDAIDKAEDRGRFKEAMEKIGLSTPKSFVCH----TLEEAWAAQ 159 Query: 176 SKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGR---EIE 230 S++G P ++P+ G +++++ + F+ ++++EQ + G E+E Sbjct: 160 SEVGFPTLIRPSFTMGGSGGGIAYNKDEFYAICERGFDASPTHELLIEQSVLGWKEYEME 219 Query: 231 CAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAY 290 DN E + D V + + +R ++ Sbjct: 220 VVRDKADNCIIVCSIENFDPMGVHT-------GDSITVAPAQTLTDKEYQIMRNASIAVL 272 Query: 291 QTLGC-AGMARVDVFLT-PENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348 + +G G + V + E+++ E+N ++ +A+G + +L Sbjct: 273 REIGVDTGGSNVQFAINPENGEMIVIEMNPRVSRSSA----LASKATGFPIAKVAAKL-A 327 Query: 349 LALERHAADNA 359 + + N Sbjct: 328 VGYTLNELRND 338 Database: /flower/db/nr Posted date: Jan 8, 2002 12:47 PM Number of letters in database: 265,026,636 Number of sequences in database: 841,211 Lambda K H 0.314 0.137 0.308 Lambda K H 0.267 0.0420 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,044,064,578 Number of Sequences: 841211 Number of extensions: 40359845 Number of successful extensions: 156814 Number of sequences better than 10.0: 7084 Number of HSP's better than 10.0 without gapping: 5365 Number of HSP's successfully gapped in prelim test: 1747 Number of HSP's that attempted gapping in prelim test: 132140 Number of HSP's gapped (non-prelim): 8590 length of query: 364 length of database: 265,026,636 effective HSP length: 121 effective length of query: 243 effective length of database: 163,240,105 effective search space: 39667345515 effective search space used: 39667345515 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.4 bits) S2: 71 (31.9 bits)