dbj|BAA29695| (AP000003) 1108aa long hypothetical cell division control protein
[Pyrococcus horikoshii]
Length = 1108
Score = 154 bits (385), Expect = 4e-37
Identities = 52/179 (29%), Positives = 83/179 (46%), Gaps = 17/179 (9%)
Query: 1 CVSGDTPVLL-DAGERRIGDLFMEAIRPKERGEIGQN-EEIVRLHDXWRIYSMV-GSEIV 57
CV DT VLL D +R+IG++ EAI+ E+ ++ +Y++ + V
Sbjct: 335 CVDYDTEVLLGDGRKRKIGEIVEEAIKKAEKEGKLGRVDDGFYAPINLELYALDVRTLKV 394
Query: 58 ETVSHAIYHGKS--NAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAW 115
V I ++ ++ +RT+ GRE+RVTP H F + + A E+ G++IA
Sbjct: 395 RKVKADIAWKRTTPEKMLRIRTKRGREIRVTPTHPFFTLEEGRIKTKKAYELKVGEKIAT 454
Query: 116 PSVSENGDSQTVTTTLVLTFDRVVS-KEMHSGVFDVYDLMVPDYGYNFIGGNGLIVLHN 173
P + +D VV +E VYDL VP++ +NFI I +HN
Sbjct: 455 PR--------EEAPEAEIFWDEVVEIEEYKPNNSWVYDLQVPEH-HNFIAN--GIFVHN 502
Score = 102 bits (251), Expect = 2e-21
Identities = 27/118 (22%), Positives = 45/118 (37%), Gaps = 4/118 (3%)
Query: 1 CVSGDTPVLLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVETV 60
CV+ DT + D G IG E ++ E I ++ + +IVE+
Sbjct: 530 CVAPDTLINTDNGRVEIGKFVEEWMKEVGEIS---EEGISYAPCFRKVETFKDGKIVESP 586
Query: 61 SHAIYH-GKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWPS 117
++ +V ++TENGR + +T KL + A EV G +
Sbjct: 587 IRRVWKLRAPKKLVRIKTENGRSIALTRETKLLTINDGELSWVEAGEVKVGTYVGTVK 644
dbj|BAA29335.1| (AP000001) 529aa long hypothetical DNA repair protein [Pyrococcus
horikoshii]
Length = 529
Score = 147 bits (369), Expect = 3e-35
Identities = 46/177 (25%), Positives = 76/177 (41%), Gaps = 9/177 (5%)
Query: 1 CVSGDTPVLLDAGERRIGDLFMEAIRP--KERGEIGQNEEIVRLHDXWRIYSMV--GSEI 56
C + DT V + + E GE+ + D +Y++ EI
Sbjct: 153 CFARDTEVYYENDTVPHMESIEEMYSKYASMNGELPFDNGYAVPLDNVFVYTLDIASGEI 212
Query: 57 VETVSHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWP 116
+T + IY K ++ ++ +G ++VTP H + + + PA+EV GD
Sbjct: 213 KKTRASYIYREKVEKLIEIKLSSGYSLKVTPSHPVLLFRDG-LQWVPAAEVKPGD--VVV 269
Query: 117 SVSENGDSQTVTTTLVLTFDRVVSKEMHSGVFDVYDLMVPDYGYNFIGGNGLIVLHN 173
V E + + + L F V S + VYDL++P+ +NFI NG +VLHN
Sbjct: 270 GVREEVLRRRIISKGELEFHEVSSVRIIDYNNWVYDLVIPE-THNFIAPNG-LVLHN 324
pir||E64477 replication factor C homolog - Methanococcus jannaschii >gi|1592072
(U67583) activator 1 (replication factor C), 35 KD
subunit [Methanococcus jannaschii]
Length = 1847
Score = 141 bits (352), Expect = 3e-33
Identities = 34/153 (22%), Positives = 64/153 (41%), Gaps = 13/153 (8%)
Query: 1 CVSGDTPVLLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVETV 60
C++GDT V+++ R IG++ E K + N +++ + + +I E
Sbjct: 54 CLTGDTKVIVNGEIREIGEVIEEISNGKFGVTLTNNLKVLGIDE--------DGKIREFD 105
Query: 61 SHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVK-IGNSVIERPASEVNEGDEIAWPSVS 119
+Y K+N ++ ++T+ GRE++VT H L + + A + GD++A P
Sbjct: 106 VQYVYKDKTNTLIKIKTKMGRELKVTTYHPLLINHKNGEIKWEKAENLKVGDKLATPRYI 165
Query: 120 ENGDSQTVTTTLV----LTFDRVVSKEMHSGVF 148
+S D KE + F
Sbjct: 166 LFNESDYNEELAEWLGYFIGDGHADKESNKITF 198
Score = 81.8 bits (199), Expect = 3e-15
Identities = 30/139 (21%), Positives = 50/139 (35%), Gaps = 25/139 (17%)
Query: 1 CVSGDTPV-LLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVET 59
C++GD + L D E +I D K + + +N E + L V+
Sbjct: 1125 CLTGDAKITLPDEREIKIEDFIKMFEERKLKHVLNRNGEDLVL------------AGVKF 1172
Query: 60 VSHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEI----AW 115
S + H + + E+GRE+ T HK + G + E+ E DE+ A
Sbjct: 1173 NSKIVNH----KVYRLVLESGREIEATGDHKFLTRDG----WKEVYELKEDDEVLVYPAL 1224
Query: 116 PSVSENGDSQTVTTTLVLT 134
V D + +
Sbjct: 1225 EGVGFEVDERRIIGLNEFY 1243
Score = 68.1 bits (164), Expect = 4e-11
Identities = 29/168 (17%), Positives = 58/168 (34%), Gaps = 28/168 (16%)
Query: 2 VSGDTPVLLD-AGERR---IGDLFMEAIRPKERG---EIGQNEEIVRLHDXWRIYSMVGS 54
VS DTP+L+ G+ + +L + + N E++ + + +R+
Sbjct: 628 VSKDTPILVKIDGKVKRTTFEELDKIYFETNDENEMYKKVDNLEVLTVDENFRVR----- 682
Query: 55 EIVETVSHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIA 114
VS I H I+ ++ E G + +T H + + N ++ + AS++ GD
Sbjct: 683 --WRKVSTIIRHKVD-KILRIKFEGGY-IELTGNHSIMMLDENGLVAKKASDIKVGDCFL 738
Query: 115 WPSVSENGDSQTVTTTLVLTFDRVVSKEMHSG---VFDVYDLMVPDYG 159
S + E V + D + +
Sbjct: 739 ---------SFVANIEGEKDRLDLKEFEPKDITSRVKIINDFDIDEDT 777
Score = 61.5 bits (147), Expect = 4e-09
Identities = 24/77 (31%), Positives = 37/77 (47%), Gaps = 2/77 (2%)
Query: 98 SVIERPASEVNEGDEIAWPSV-SENGDSQTVTTTLVLTFDRVVSKEMHSGVFDVYDLMVP 156
+ E +E+ EI ++ + + +D +V E +G F +YDL VP
Sbjct: 526 KLEEIRKTELKLVKEILNDEKLIDSIGYVLFLASNEIYWDEIVEIEQLNGEFTIYDLHVP 585
Query: 157 DYGYNFIGGNGLIVLHN 173
Y +NFIGGN +LHN
Sbjct: 586 RY-HNFIGGNLPTILHN 601
Score = 39.7 bits (91), Expect = 0.013
Identities = 16/51 (31%), Positives = 21/51 (40%), Gaps = 1/51 (1%)
Query: 123 DSQTVTTTLVLTFDRVVSKEMHSGVFDVYDLMVPDYGYNFIGGNGLIVLHN 173
D + L V E+ VYD+ VP+ F GN I+LHN
Sbjct: 1013 DLLKKLSKTELYALVVKEIEIIDYNDFVYDVSVPNNEM-FFAGNVPILLHN 1062
sp|Q58191|Y781_METJA HYPOTHETICAL PROTEIN MJ0781 >gi|2129090|pir||E64397 klbA homolog -
Methanococcus jannaschii >gi|1591480 (U67522) type II
secretion system protein [Methanococcus jannaschii]
Length = 721
Score = 138 bits (345), Expect = 2e-32
Identities = 35/180 (19%), Positives = 69/180 (37%), Gaps = 21/180 (11%)
Query: 2 VSGDTPV-LLDAGERRIGDLFMEAIRPKERGEIGQN-----EEIVRLHDXWRIYSMVGSE 55
++ D P+ L D IG+ + + + ++ +I + + ++ +
Sbjct: 406 LAYDEPIYLSDGNIINIGEFVDKFFKKYKNSIKKEDNGFGWIDIGNENIYIKSFNKLSLI 465
Query: 56 IVETVSHAIYHG-KSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIA 114
I + ++ S ++ + T+N RE+ +T H +++ V+E A V GD I
Sbjct: 466 IEDKRILRVWRKKYSGKLIKITTKNRREITLTHDHPVYISKTGEVLEINAEMVKVGDYIY 525
Query: 115 WPSVSENGDSQTVTTTLVLTFDRVVSKEMHSGVFDVYDLMVPDYGYNFIGG-NGLIVLHN 173
P + D V+ E +YDL V D + +I G N + N
Sbjct: 526 IPK------------NNTINLDEVIKVETVDYNGHIYDLTVED-NHTYIAGKNEGFAVSN 572
dbj|BAA31102.1| (AP000007) 964aa long hypothetical H(+)-transporting ATP synthase
subunit A [Pyrococcus horikoshii]
Length = 964
Score = 137 bits (342), Expect = 5e-32
Identities = 45/156 (28%), Positives = 75/156 (47%), Gaps = 8/156 (5%)
Query: 1 CVSGDTPVLL-DAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVET 59
CV GDT VL + G +I +L+ + K R + NEE L +Y +IVE
Sbjct: 241 CVDGDTLVLTKEFGLIKIKELYEKL-DGKGRKIVEGNEEWTELEKPITVYGYKDGKIVEI 299
Query: 60 VSHAIYHGKSNAIVNVRTENGREVRVTPVHKLF----VKIGNSVIERPASEVNEGDEIAW 115
+ +Y G S+ +V +RT GR+++VTP+H+LF K G + E A V GD IA
Sbjct: 300 KATHVYKGVSSGMVEIRTRTGRKIKVTPIHRLFTGRVTKDGLILKEVMAMHVKPGDRIAV 359
Query: 116 PSVSENGDSQTV--TTTLVLTFDRVVSKEMHSGVFD 149
+ G+ + + + ++++E+ +
Sbjct: 360 VKKIDGGEYIKLDSSNVGEIKVPEILNEELAEFLGY 395
Score = 50.2 bits (118), Expect = 9e-06
Identities = 30/143 (20%), Positives = 49/143 (33%), Gaps = 25/143 (17%)
Query: 48 IYSMVGSEIVETVSHAIYHGKSNAIVNVR---TENGREVRVT---PVHKLFVKIGNSVIE 101
+ + V + I I + + G V ++ +K+ V ++
Sbjct: 482 VRAFVNAYIKGKEEVEITLASEEGAYELSYLFAKLGIYVTISKSGEYYKVRVSRRGNLDT 541
Query: 102 RPASEVNEGDEIAWPSVSENGDSQTVTTTLVL-----------TFDRVVSKEMHSGVFDV 150
P EVN P V D + ++ L FD V+ +V
Sbjct: 542 IPV-EVNG-----MPKVLPYEDFRKFAKSIGLEEVAENHLQHIIFDEVIDVRYIPEPQEV 595
Query: 151 YDLMVPDYGYNFIGGNGLIVLHN 173
YD V +NF+GGN +LHN
Sbjct: 596 YD--VTTETHNFVGGNMPTLLHN 616
sp|O33845|DPOL_THEST DNA POLYMERASE >gi|2293389|emb|CAA73475| (Y13030) DNA-directed DNA
polymerase [Thermococcus sp.]
Length = 1829
Score = 137 bits (341), Expect = 6e-32
Identities = 34/164 (20%), Positives = 56/164 (33%), Gaps = 10/164 (6%)
Query: 7 PVLLDA--GERRIGDLFMEAIRP-KERGEIGQNEEIVRLHDXWRIYSMVGSEIVE--TVS 61
P++ + +IG+ + K++ N E++ + + + S+ E V
Sbjct: 863 PIIENGEVKFVKIGEFIDRYMEEQKDKVRTVDNTEVLEVDNIFAFSLNKESKKSEIKKVK 922
Query: 62 HAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWPSVSEN 121
I H V +GR++ +T H LF + E EV GD I P +
Sbjct: 923 ALIRHKYKGEAYEVELNSGRKIHITRGHSLFTIRNGKIKEIWGEEVKVGDLIIVPKKVKL 982
Query: 122 GDSQTVTTTLVLTFDRVVSKEMHSGVFDVYDLMVPDYGYNFIGG 165
+ + V L SK DV NF G
Sbjct: 983 NEKEAVINIPELI-----SKLPDEDTADVVMTTPVKGRKNFFKG 1021
Score = 94.2 bits (231), Expect = 5e-19
Identities = 31/177 (17%), Positives = 55/177 (30%), Gaps = 26/177 (14%)
Query: 2 VSGDTPVLLDAG----ERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIV 57
V+GDT +++ I LF +E L D + +++
Sbjct: 1443 VTGDTEIIVKRNGRIEFVPIEKLFERVD------YRIGEKEYCILEDVEALTLDNRGKLI 1496
Query: 58 ETVSHAI-YHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWP 116
+ H + + N + VT H L V + E E+ IA
Sbjct: 1497 WKKVPYVMRHRAKKKVYRIWITNSWYIDVTEDHSLIVAEDG-LKEARPMEIEGKSLIAT- 1554
Query: 117 SVSENGDSQTVTTTLVLTFDRVVSKEMHSGVFDVYDLMVPDYGYNFIGGNGLIVLHN 173
+ + + + E S VYD+ V + + F I++HN
Sbjct: 1555 --------KDDLSGVEYIKPH--AIEEISYNGYVYDIEV-EGTHRFFAN--GILVHN 1598
Score = 49.4 bits (116), Expect = 2e-05
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 127 VTTTLVLTFDRVVSKEMHSGVFDVYDLMVPDYGYNFIGGNGLIVLHN 173
+ DRV + E VYDL V D NF+ G GL+ HN
Sbjct: 1347 FLLNGDIVLDRVKNVEKREYEGYVYDLSVEDNE-NFLVGFGLLYAHN 1392
Score = 39.7 bits (91), Expect = 0.013
Identities = 22/155 (14%), Positives = 41/155 (26%), Gaps = 46/155 (29%)
Query: 1 CVSGDTPVLLDA-GERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVET 59
C DT V++ G I D+ I +
Sbjct: 410 CHPADTKVIVKGKGIVNISDV----KEGDYILGIDG---------------------WQR 444
Query: 60 VSHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEV-------NEGDE 112
V + ++N+ NG ++ TP HK+ V N R + +
Sbjct: 445 VKKVWKYHYEGKLINI---NG--LKCTPNHKVPVVTENDRQTRIRDSLAKSFLSGKVKGK 499
Query: 113 IAWPSVSENGDSQTVTTTLVLTFDRVVSKEMHSGV 147
I ++ ++ +E+ G
Sbjct: 500 IIT--------TKLFEKIAEFEKNKPSEEEILKGE 526
sp|O59610|DPOL_PYRHO DNA POLYMERASE >gi|3258391|dbj|BAA31074.1| (AP000007) 1235aa long
hypothetical DNA-directed DNA polymerase [Pyrococcus
horikoshii]
Length = 1235
Score = 136 bits (340), Expect = 8e-32
Identities = 31/156 (19%), Positives = 60/156 (37%), Gaps = 8/156 (5%)
Query: 13 GERRIGDLFM-EAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVE--TVSHAIYHGKS 69
+IGD E ER + EI+ + D + ++ E V I H S
Sbjct: 509 RFVKIGDFIDREIEENAERVKRDGETEILEVKDLKALSFNRETKKSELKKVKALIRHRYS 568
Query: 70 NAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWPSVSENGDSQTVTT 129
+ +++ ++GR +++T H LF +++ E+ GD + P + +S+ V
Sbjct: 569 GKVYSIKLKSGRRIKITSGHSLFSVKNGKLVKVRGDELKPGDLVVVPGRLKLPESKQVLN 628
Query: 130 TLVLTFDRVVSKEMHSGVFDVYDLMVPDYGYNFIGG 165
+ L K ++ ++ NF G
Sbjct: 629 LVELLL-----KLPEEETSNIVMMIPVKGRKNFFKG 659
Score = 47.5 bits (111), Expect = 6e-05
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 125 QTVTTTLVLTFDRVVSKEMHSGVFDVYDLMVPDYGYNFIGGNGLIVLHN 173
+ ++ + D V S E+ VYDL V D NF+ G GL+ HN
Sbjct: 905 KKESSNGDIVLDSVESIEVEKYEGYVYDLSVEDNE-NFLVGFGLLYAHN 952
sp|P30317|DPOL_THELI DNA POLYMERASE (VENT DNA POLYMERASE) [CONTAINS: PI-TLI I
ENDONUCLEASE; PI-TLI II ENDONUCLEASE]
>gi|543522|pir||S42459 DNA-directed DNA polymerase (EC
2.7.7.7) Vent precursor - Thermococcus litoralis
>gi|154686 (M74198) DNA-dependent DNA polymerase
precursor [Thermococcus litoralis]
Length = 1702
Score = 135 bits (338), Expect = 1e-31
Identities = 28/158 (17%), Positives = 55/158 (34%), Gaps = 8/158 (5%)
Query: 11 DAGERRIGDLFMEAIRP-KERGEIGQNEEIVRLHDXWRIYSMVGSEI--VETVSHAIYHG 67
+ +IG+ + KE + +N E++ +++ + + V+ V I H
Sbjct: 509 EIKFVKIGEFINSYMEKQKENVKTVENTEVLEVNNLFAFSFNKKIKESEVKKVKALIRHK 568
Query: 68 KSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWPSVSENGDSQTV 127
++ +GR++ +T H LF + E + EGD I P + +
Sbjct: 569 YKGKAYEIQLSSGRKINITAGHSLFTVRNGEIKEVSGDGIKEGDLIVAPKKIKLNEKGVS 628
Query: 128 TTTLVLTFDRVVSKEMHSGVFDVYDLMVPDYGYNFIGG 165
L D + D+ + NF G
Sbjct: 629 INIPELISDLSEEET-----ADIVMTISAKGRKNFFKG 661
Score = 57.2 bits (136), Expect = 7e-08
Identities = 21/161 (13%), Positives = 49/161 (30%), Gaps = 26/161 (16%)
Query: 2 VSGDTPVLL----DAGERRIGDLFME--AIRPKERGEIGQNEEIVRLHDXWRIYSMVGSE 55
VSG++ +++ +I DLF + ++ I + E + L D +
Sbjct: 1083 VSGESEIIIRQNGKIRFVKIKDLFSKVDYSIGEKEYCILEGVEALTLDD--------DGK 1134
Query: 56 IVETVSHAI-YHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIA 114
+V + H + + + N + VT H L + S+ +I
Sbjct: 1135 LVWKPVPYVMRHRANKRMFRIWLTNSWYIDVTEDHSL-------IGYLNTSKTKTAKKI- 1186
Query: 115 WPSVSENGDSQTVTTTLVLTFDRVVSKEMHSGVFDVYDLMV 155
+ + + + + ++ V
Sbjct: 1187 ---GERLKEVKPFELGKAVKSLICPNAPLKDENTKTSEIAV 1224
Score = 51.8 bits (122), Expect = 3e-06
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 127 VTTTLVLTFDRVVSKEMHSGVFDVYDLMVPDYGYNFIGGNGLIVLHN 173
+ DRV S + VYDL V D NF+ G GL+ HN
Sbjct: 987 FFINGDIVLDRVKSVKEKDYEGYVYDLSVEDNE-NFLVGFGLLYAHN 1032
Score = 46.7 bits (109), Expect = 1e-04
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 124 SQTVTTTLVLTFDRVVSKEMHSGVFDVYDLMVPDYGYNFIGGNGLIVLHN 173
+ T V E VYD+ V + + F N I++HN
Sbjct: 1425 VKRNTIDFGFDLVHVKKVEEIPYEGYVYDIEVEE-THRFFANN--ILVHN 1471
sp|Q58446|RPA2_METJA DNA-DIRECTED RNA POLYMERASE SUBUNIT A" >gi|2127865|pir||B64430
DNA-directed RNA polymerase (EC 2.7.7.6) subunit A''
(intein-containing) - Methanococcus jannaschii
>gi|1591697 (U67547) DNA-directed RNA polymerase,
subunit A'' (rpoA2) [Methanococcus jannaschii]
Length = 859
Score = 135 bits (336), Expect = 2e-31
Identities = 35/175 (20%), Positives = 66/175 (37%), Gaps = 12/175 (6%)
Query: 2 VSGDTPVLLDAG----ERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIV 57
+ + +++ G IG L E I +I N E+ L S+ E V
Sbjct: 77 LPYEEKIIIKEGEFIKPVEIGKLVDEMIERFGFEKI-GNSEVCDLPIDIYALSLDQDEKV 135
Query: 58 ETV--SHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAW 115
I H + ++ ++T++GRE+ TP H ++ N +I SE+ GD I
Sbjct: 136 HWKRIISCIRHKHNGKLIKIKTKSGREITATPYHSFVIRKDNKIIPVKGSELKIGDRIPV 195
Query: 116 PSVSENGDSQTVTTTLVLTFDRVVSKEMHSGVFDVYDLMVP-----DYGYNFIGG 165
+ + + ++ + VV + + +P DY + + G
Sbjct: 196 VKHIPANCVEAINISDYVSGNYVVDNINNKIAPKINGKSIPNNIKLDYDFGYFIG 250
pir||S71551 DNA-directed DNA polymerase (EC 2.7.7.7) KOD precursor - Pyrococcus
sp. (strain KOD1)
Length = 1670
Score = 133 bits (333), Expect = 6e-31
Identities = 34/164 (20%), Positives = 58/164 (34%), Gaps = 10/164 (6%)
Query: 7 PVLLDAG--ERRIGDLFMEAIR-PKERGEIGQNEEIVRLHDXWRIYSMVGSEIVE--TVS 61
PVL + RIG+L + + + E++ + + E V
Sbjct: 860 PVLEEGEVHFVRIGELIDRMMEENAGKVKREGETEVLEVSGLEVPSFNRRTNKAELKRVK 919
Query: 62 HAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWPSVSEN 121
I H S + +R ++GR +++T H LF ++E E+ GD +A P E
Sbjct: 920 ALIRHDYSGKVYTIRLKSGRRIKITSGHSLFSVRNGELVEVTGDELKPGDLVAVPRRLEL 979
Query: 122 GDSQTVTTTLVLTFDRVVSKEMHSGVFDVYDLMVPDYGYNFIGG 165
+ V + L +E V + NF G
Sbjct: 980 PERNHVLNLVEL-LLGTPEEETLDIVMTI----PVKGKKNFFKG 1018
Score = 47.9 bits (112), Expect = 5e-05
Identities = 17/46 (36%), Positives = 22/46 (46%), Gaps = 1/46 (2%)
Query: 128 TTTLVLTFDRVVSKEMHSGVFDVYDLMVPDYGYNFIGGNGLIVLHN 173
+ DRV S ++ VYDL V D NF+ G GL+ HN
Sbjct: 1343 LIEGDVVLDRVESVDVEDYDGYVYDLSVEDNE-NFLVGFGLVYAHN 1387
Score = 33.8 bits (76), Expect = 0.76
Identities = 20/99 (20%), Positives = 31/99 (31%), Gaps = 31/99 (31%)
Query: 1 CVSGDTPVLLDA-GERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVET 59
C DT V++ G I ++ + + G + V
Sbjct: 407 CHPADTKVVVKGKGIINISEVQEGD----------------------YVLGIDGWQRVRK 444
Query: 60 VSHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNS 98
V +VN+ NG ++ TP HKL V N
Sbjct: 445 VWEY---DYKGELVNI---NG--LKCTPNHKLPVVTKNE 475
dbj|BAA06142| (D29671) DNA-dependent DNA polymerase [Pyrococcus sp.]
Length = 1671
Score = 133 bits (333), Expect = 6e-31
Identities = 34/164 (20%), Positives = 58/164 (34%), Gaps = 10/164 (6%)
Query: 7 PVLLDAG--ERRIGDLFMEAIR-PKERGEIGQNEEIVRLHDXWRIYSMVGSEIVE--TVS 61
PVL + RIG+L + + + E++ + + E V
Sbjct: 860 PVLEEGEVHFVRIGELIDRMMEENAGKVKREGETEVLEVSGLEVPSFNRRTNKAELKRVK 919
Query: 62 HAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWPSVSEN 121
I H S + +R ++GR +++T H LF ++E E+ GD +A P E
Sbjct: 920 ALIRHDYSGKVYTIRLKSGRRIKITSGHSLFSVRNGELVEVTGDELKPGDLVAVPRRLEL 979
Query: 122 GDSQTVTTTLVLTFDRVVSKEMHSGVFDVYDLMVPDYGYNFIGG 165
+ V + L +E V + NF G
Sbjct: 980 PERNHVLNLVEL-LLGTPEEETLDIVMTI----PVKGKKNFFKG 1018
Score = 47.9 bits (112), Expect = 5e-05
Identities = 17/46 (36%), Positives = 22/46 (46%), Gaps = 1/46 (2%)
Query: 128 TTTLVLTFDRVVSKEMHSGVFDVYDLMVPDYGYNFIGGNGLIVLHN 173
+ DRV S ++ VYDL V D NF+ G GL+ HN
Sbjct: 1344 LIEGDVVLDRVESVDVEDYDGYVYDLSVEDNE-NFLVGFGLVYAHN 1388
Score = 33.8 bits (76), Expect = 0.76
Identities = 20/99 (20%), Positives = 31/99 (31%), Gaps = 31/99 (31%)
Query: 1 CVSGDTPVLLDA-GERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVET 59
C DT V++ G I ++ + + G + V
Sbjct: 407 CHPADTKVVVKGKGIINISEVQEGD----------------------YVLGIDGWQRVRK 444
Query: 60 VSHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNS 98
V +VN+ NG ++ TP HKL V N
Sbjct: 445 VWEY---DYKGELVNI---NG--LKCTPNHKLPVVTKNE 475
sp|Q57710|Y262_METJA HYPOTHETICAL PROTEIN MJ0262 >gi|2127929|pir||G64332 FUN12/bIF-2
family probable translation initiation factor homolog
(intein-containing) - Methanococcus jannaschii
>gi|1590990 (U67481) translation initiation factor aIF-2
(infB) [Methanococcus jannaschii]
Length = 1155
Score = 133 bits (331), Expect = 1e-30
Identities = 34/180 (18%), Positives = 64/180 (34%), Gaps = 17/180 (9%)
Query: 1 CVSGDTPVLLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVG-SEIVET 59
C+ VL + GE +I DLF KE E + +EI +L+ +++++ EI
Sbjct: 31 CLMPHEKVLTEYGEIKIEDLF---KIGKEIVEKDELKEIRKLN--IKVHTLNENGEIKII 85
Query: 60 VSHAIYH-GKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWPSV 118
+ ++ ++ V+ +N + TP H G A + +G +A P
Sbjct: 86 NAPYVWKLKHKGKMIKVKLKNWHSITTTPEHPFLTNNG----WIKAENIKKGMYVAIPRK 141
Query: 119 SENGD----SQTVTTTLVLTFDRVVSKEMHSGVFDVY-DLMVPDYGYNFIGGNGLIVLHN 173
+ + +LT + +V + N I+ HN
Sbjct: 142 IYGNEDFEKFIEFINSKILTNELIVKVNEKDLKNVELPSTKIYKKQKNVFRSED-IIEHN 200
Score = 45.1 bits (105), Expect = 3e-04
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 133 LTFDRVVSKEMHSGVFDVYDLMVPDYGYNFIGGNGLIVLHN 173
+ F V E+ VYDL +NFI IV+HN
Sbjct: 540 IAFVEVEDVEIIDYDGYVYDL--TTETHNFIAN--GIVVHN 576
dbj|BAA29181.1| (AP000001) 855aa long hypothetical replication factor C subunit
[Pyrococcus horikoshii]
Length = 855
Score = 130 bits (324), Expect = 6e-30
Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 9/121 (7%)
Query: 1 CVSGDTPVLLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVETV 60
C++GDT V+ + + +L + K + +++ + + ++ E
Sbjct: 62 CLTGDTKVIANGQLFELRELVEKISGGKFGPTPVKGLKVIGIDE--------DGKLREFE 113
Query: 61 SHAIYHGKSNAIVNVRTENGREVRVTPVHKLFV-KIGNSVIERPASEVNEGDEIAWPSVS 119
+Y K+ ++ +RT GRE++VTP H L V + + A E+ GD++A P
Sbjct: 114 VQYVYKDKTERLIRIRTRLGRELKVTPYHPLLVNRRNGEIKWVKAEELKPGDKLAVPRFL 173
Query: 120 E 120
Sbjct: 174 P 174
Score = 67.7 bits (163), Expect = 5e-11
Identities = 37/179 (20%), Positives = 63/179 (34%), Gaps = 21/179 (11%)
Query: 8 VLLDAGER--RIGDLFME----------AIRPKERGEIGQNEEIVRLHDXWRIYSMVGSE 55
+L+D E RI ++ E I K + +I ++ + +
Sbjct: 416 ILIDWNEVAKRIEEVAEETGIRADELLEYIEGKRKLSFKDYIKIAKV-LGIDV---EHTI 471
Query: 56 IVETVSHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAW 115
V Y + + T N + + + V+I + + + E I
Sbjct: 472 EAMRVFARKYSSYAEIGRRLGTWNSSVKTILESNAVNVEILERIRKIELELIEE---ILS 528
Query: 116 PSVSENGD-SQTVTTTLVLTFDRVVSKEMHSGVFDVYDLMVPDYGYNFIGGNGLIVLHN 173
+ G + L +D + E G F +YDL VP Y +NFI GN V+HN
Sbjct: 529 DEKLKEGIAYLIFLSQNELYWDEITKVEELRGEFIIYDLHVPGY-HNFIAGNMPTVVHN 586
pir||E64410 DNA-directed DNA polymerase (EC 2.7.7.7) family B precursor
(intein-containing) - Methanococcus jannaschii
Length = 1634
Score = 125 bits (311), Expect = 2e-28
Identities = 29/162 (17%), Positives = 62/162 (37%), Gaps = 14/162 (8%)
Query: 8 VLLDAGE--RRIGDLFMEAIRP-KERGEIGQNEEIVRLHDXWRIYSMVGSEIVE--TVSH 62
++ + G +IG+ + +R K++ + EI+ + ++ E V
Sbjct: 892 IIEEDGIKVVKIGEYIDDLMRKHKDKIKFSGISEILETKNLKTFSFDKITKKCEIKKVKA 951
Query: 63 AIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWPSVSENG 122
I H ++ +GR ++VT H LF ++E +V GD I P
Sbjct: 952 LIRHPYFGKAYKIKLRSGRTIKVTRGHSLFKYENGKIVEVKGDDVRFGDLIVVPKKLTCV 1011
Query: 123 DSQTVTTTLVLTFDRVVSKEMHSGVFDVYDLMVPDY-GYNFI 163
D + V + + +++ ++ DL++ + F
Sbjct: 1012 DKEVVIN--------IPKRLINADEEEIKDLVITKHKDKAFF 1045
Score = 40.1 bits (92), Expect = 0.010
Identities = 28/174 (16%), Positives = 58/174 (33%), Gaps = 29/174 (16%)
Query: 7 PVLL--DAGERR------IGDLFMEAIRP--KERGEIGQNEEIVRLHDXWRIYSMVGSEI 56
VL + G + D+ R K + + + IV + D ++G +
Sbjct: 398 RVLTTYEGGYVKEPEKGMFEDIISMDFRCHPKGTKVVVKGKGIVNIEDVKEGNYVLGIDG 457
Query: 57 VETVSHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWP 116
+ V + ++NV NG ++ TP HK+ ++ + + ++N+ D +
Sbjct: 458 WQKVKKVWKYEYEGELINV---NG--LKCTPNHKIPLR--YKIKHK---KINKNDYLV-- 505
Query: 117 SVSENGDSQTVTTTLVLTFDRVVSKEMH-SGVFDVYDLMVPDYGYNFIGGNGLI 169
T E + + D+ +FI + LI
Sbjct: 506 RDIYAKSLLTKF-KGEGKLILCKDFETIGNYEKYINDM-----DEDFILKSELI 553
sp|Q58295|DPOL_METJA DNA POLYMERASE >gi|2826345 (U67532) DNA polymerase B1 [Methanococcus
jannaschii]
Length = 1634
Score = 125 bits (311), Expect = 2e-28
Identities = 29/162 (17%), Positives = 62/162 (37%), Gaps = 14/162 (8%)
Query: 8 VLLDAGE--RRIGDLFMEAIRP-KERGEIGQNEEIVRLHDXWRIYSMVGSEIVE--TVSH 62
++ + G +IG+ + +R K++ + EI+ + ++ E V
Sbjct: 892 IIEEDGIKVVKIGEYIDDLMRKHKDKIKFSGISEILETKNLKTFSFDKITKKCEIKKVKA 951
Query: 63 AIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWPSVSENG 122
I H ++ +GR ++VT H LF ++E +V GD I P
Sbjct: 952 LIRHPYFGKAYKIKLRSGRTIKVTRGHSLFKYENGKIVEVKGDDVRFGDLIVVPKKLTCV 1011
Query: 123 DSQTVTTTLVLTFDRVVSKEMHSGVFDVYDLMVPDY-GYNFI 163
D + V + + +++ ++ DL++ + F
Sbjct: 1012 DKEVVIN--------IPKRLINADEEEIKDLVITKHKDKAFF 1045
Score = 40.1 bits (92), Expect = 0.010
Identities = 28/174 (16%), Positives = 58/174 (33%), Gaps = 29/174 (16%)
Query: 7 PVLL--DAGERR------IGDLFMEAIRP--KERGEIGQNEEIVRLHDXWRIYSMVGSEI 56
VL + G + D+ R K + + + IV + D ++G +
Sbjct: 398 RVLTTYEGGYVKEPEKGMFEDIISMDFRCHPKGTKVVVKGKGIVNIEDVKEGNYVLGIDG 457
Query: 57 VETVSHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWP 116
+ V + ++NV NG ++ TP HK+ ++ + + ++N+ D +
Sbjct: 458 WQKVKKVWKYEYEGELINV---NG--LKCTPNHKIPLR--YKIKHK---KINKNDYLV-- 505
Query: 117 SVSENGDSQTVTTTLVLTFDRVVSKEMH-SGVFDVYDLMVPDYGYNFIGGNGLI 169
T E + + D+ +FI + LI
Sbjct: 506 RDIYAKSLLTKF-KGEGKLILCKDFETIGNYEKYINDM-----DEDFILKSELI 553
sp|Q58242|Y832_METJA HYPOTHETICAL PROTEIN MJ0832 >gi|2129243|pir||H64403
ribonucleoside-triphosphate reductase, anaerobic
(intein-containing) - Methanococcus jannaschii
>gi|1591520 (U67527) anaerobic
ribonucleoside-triphosphate reductase (nrdD)
[Methanococcus jannaschii]
Length = 1750
Score = 124 bits (309), Expect = 4e-28
Identities = 29/168 (17%), Positives = 59/168 (34%), Gaps = 16/168 (9%)
Query: 2 VSGDTPVLL----DAGERRIGDLFMEAIRPKERGEI---GQNEEIVRLHDXWR-IYSMVG 53
+ D +L+ + +IG+ + + + I N E+ +
Sbjct: 1060 LPYDEKILIFENNEYKLVKIGEFVEKYLNRYKDRAITYGDNNIEVYIKDENIYAPSFDKD 1119
Query: 54 SEIVETVSHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVK-IGNSVIERPASEVNEGDE 112
+IV + I + E+G++VRVT H +F V+E AS++ GD
Sbjct: 1120 GKIVLKPITHAIRHRGKEIYEIELESGKKVRVTGDHSVFTINDNLDVVEVKASDLKVGDF 1179
Query: 113 IAWPSVSENGDSQTVTTTLVLTFDRVVSKEMHSGVFDVYDLMVPDYGY 160
I P + + + + +V + V + D + +
Sbjct: 1180 IITPKIIPS------ISKDKIYLSEIVKNKDKYYV-KIKDHIKFIEEH 1220
Score = 68.1 bits (164), Expect = 4e-11
Identities = 20/115 (17%), Positives = 46/115 (39%), Gaps = 11/115 (9%)
Query: 5 DTPVLLDAGER----RIGDLFMEAIRP-KERGEIGQNEEIVRLHDXWRIYSM----VGSE 55
D + + G++ +IG+ E + K++ + + EI+ L +Y++ +
Sbjct: 342 DELIFIKEGDKLKVCKIGEAIDEFMEKYKDKIIVDGDTEILYLDGIAEVYTISVNVKTGK 401
Query: 56 IVETVSHAI-YHGKSNAIVNVRTENGREVRVTPVHKLFVK-IGNSVIERPASEVN 108
+AI H + V ++G + VT H LF +++ ++
Sbjct: 402 AEFKRVYAISRHKPRGKVYKVIGKDGTSIIVTEDHSLFNYDENGNLVCVKPRQMK 456
Score = 45.9 bits (107), Expect = 2e-04
Identities = 31/152 (20%), Positives = 51/152 (33%), Gaps = 13/152 (8%)
Query: 25 IRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVETVSHAIYHGKSNAIVNVRTENGREVR 84
I KE E + EI ++ + +E + + + + + N +
Sbjct: 1450 ITGKENIEKLLDVEIK--NNGGKDVIPKIAEKFKEIINQYSQREWKERFGIDVNN---LH 1504
Query: 85 VTPVHKLFVKIGNSVIERP--ASEVNEGDEIAWPSVSENGDSQTVTTTLVLTFDRVVSKE 142
+ K + V E +E D L F+R+ S
Sbjct: 1505 IWEDLKKGYMSRYRAKKVLNIMKNVKEIEE----KYGRLLDKIGQLIDNDLLFERIKSIR 1560
Query: 143 MHSGVF-DVYDLMVPDYGYNFIGGNGLIVLHN 173
+ + VYD+ V + NFIGG G I LHN
Sbjct: 1561 VLDEIPEYVYDISV-EGTENFIGGEGFICLHN 1591
gi|436494 (U00707) endonuclease [Pyrococcus sp.]
Length = 537
Score = 120 bits (299), Expect = 5e-27
Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 11/163 (6%)
Query: 9 LLDAGERRI---GDLFMEAIR-PKERGEIGQNEEIVRLHDXWRIYSMVGSEI--VETVSH 62
L+ G+ +I GD ++ + + + + E++ + S+ V V
Sbjct: 10 LIKNGKVKIFRIGDFVDGLMKANQGKVKKTGDTEVLEVAGIHAFSFDRKSKKARVMAVKA 69
Query: 63 AIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWPSVSENG 122
I H S + + +GR++ +T H LFV ++E +V GD +A P
Sbjct: 70 VIRHRYSGNVYRIVLNSGRKITITEGHSLFVYRNGDLVEATGEDVKIGDLLAVPRSVNLP 129
Query: 123 DSQTVTTTLVLTFDRVVSKEMHSGVFDVYDLMVPDYGYNFIGG 165
+ + + L + + D+ + NF G
Sbjct: 130 EKRERLNIVELLLNLSPEETE-----DIILTIPVKGRKNFFKG 167
Score = 49.8 bits (117), Expect = 1e-05
Identities = 25/127 (19%), Positives = 40/127 (30%), Gaps = 17/127 (13%)
Query: 61 SHAIYHGKSNAIVNVRTENGREVRVTPV-------HKLFVKIG------NSVIERPASEV 107
AI G + + V E++ T H V V ++ S
Sbjct: 414 VSAIKLGYDSGVYRVYVNE--ELKFTEYRKKKNVYHSHIVPKDILKETFGKVFQKNISYK 471
Query: 108 NEGDEIAWPSVSENGDSQTV-TTTLVLTFDRVVSKEMHSGVFDVYDLMVPDYGYNFIGGN 166
+ + + + + DRVV + VYDL V + NF+ G
Sbjct: 472 KFRELVENGKLDREKAKRIEWLLNGDIVLDRVVEIKREYYDGYVYDLSVDEDE-NFLAGF 530
Query: 167 GLIVLHN 173
G + HN
Sbjct: 531 GFLYAHN 537
sp|Q51334|DPOL_PYRSD DNA POLYMERASE (DEEP VENT DNA POLYMERASE) [CONTAINS: PI-PSP I
ENDONUCLEASE] >gi|2129416|pir||S68593 DNA-directed DNA
polymerase (EC 2.7.7.7) Vent precursor - Pyrococcus sp
>gi|825735 (U00707) Deep Vent DNA polymerase and PI-PspI
precursor [Pyrococcus sp.]
Length = 1312
Score = 120 bits (299), Expect = 5e-27
Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 11/163 (6%)
Query: 9 LLDAGERRI---GDLFMEAIR-PKERGEIGQNEEIVRLHDXWRIYSMVGSEI--VETVSH 62
L+ G+ +I GD ++ + + + + E++ + S+ V V
Sbjct: 502 LIKNGKVKIFRIGDFVDGLMKANQGKVKKTGDTEVLEVAGIHAFSFDRKSKKARVMAVKA 561
Query: 63 AIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWPSVSENG 122
I H S + + +GR++ +T H LFV ++E +V GD +A P
Sbjct: 562 VIRHRYSGNVYRIVLNSGRKITITEGHSLFVYRNGDLVEATGEDVKIGDLLAVPRSVNLP 621
Query: 123 DSQTVTTTLVLTFDRVVSKEMHSGVFDVYDLMVPDYGYNFIGG 165
+ + + L + + D+ + NF G
Sbjct: 622 EKRERLNIVELLLNLSPEETE-----DIILTIPVKGRKNFFKG 659
Score = 49.8 bits (117), Expect = 1e-05
Identities = 25/127 (19%), Positives = 40/127 (30%), Gaps = 17/127 (13%)
Query: 61 SHAIYHGKSNAIVNVRTENGREVRVTPV-------HKLFVKIG------NSVIERPASEV 107
AI G + + V E++ T H V V ++ S
Sbjct: 906 VSAIKLGYDSGVYRVYVNE--ELKFTEYRKKKNVYHSHIVPKDILKETFGKVFQKNISYK 963
Query: 108 NEGDEIAWPSVSENGDSQTV-TTTLVLTFDRVVSKEMHSGVFDVYDLMVPDYGYNFIGGN 166
+ + + + + DRVV + VYDL V + NF+ G
Sbjct: 964 KFRELVENGKLDREKAKRIEWLLNGDIVLDRVVEIKREYYDGYVYDLSVDEDE-NFLAGF 1022
Query: 167 GLIVLHN 173
G + HN
Sbjct: 1023 GFLYAHN 1029
sp|P72065|GYRA_MYCXE DNA GYRASE SUBUNIT A >gi|1907313 (U67876) gyrase subunit A
precursor [Mycobacterium xenopi]
Length = 327
Score = 120 bits (298), Expect = 7e-27
Identities = 37/216 (17%), Positives = 60/216 (27%), Gaps = 61/216 (28%)
Query: 1 CVSGDTPV-LLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVET 59
C++GD V L + RI D+ A + ++ L
Sbjct: 66 CITGDALVALPEGESVRIADIVPGARPNSDNA-----IDLKVLDRHGNPVLADR------ 114
Query: 60 VSHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIG----NSVIERPASEVNEGDEIAW 115
++H + + VRT G V T H L + +++ + E+ GD
Sbjct: 115 ----LFHSGEHPVYTVRTVEGLRVTGTANHPLLCLVDVAGVPTLLWKLIDEIKPGDYAVI 170
Query: 116 PSVSENGD--------------------------------------SQTVTTTLVLTFDR 137
+ + D T + +
Sbjct: 171 QRSAFSVDCAGFARGKPEFAPTTYTVGVPGLVRFLEAHHRDPDAQAIADELTDGRFYYAK 230
Query: 138 VVSKEMHSGVFDVYDLMVPDYGYNFIGGNGLIVLHN 173
V S +GV VY L V + FI V HN
Sbjct: 231 VASVTD-AGVQPVYSLRVDTADHAFITN--GFVSHN 263
emb|CAB13897| (Z99114) similar to ribonucleoside-diphosphate reductase (alpha
subunit) [Bacillus subtilis]
Length = 786
Score = 119 bits (296), Expect = 1e-26
Identities = 33/171 (19%), Positives = 61/171 (35%), Gaps = 18/171 (10%)
Query: 1 CVSGDTPVLLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVETV 60
CV+G+T +L + G + DL+ + K I + G+ IV+ +
Sbjct: 83 CVTGETLLLTENGYEKAADLYKKQNDLK--VVIDNRTKDFA-------VGSKGTTIVDAI 133
Query: 61 SHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWP---- 116
+ + I V+T+ G E+R T HK +VK + + +++ GD++
Sbjct: 134 PMQLTKKDAE-IFKVKTKQGYEIRATEWHKFYVKRDGEIQKLQLNQLKTGDKLLVQSAEG 192
Query: 117 --SVSENGDSQTV--TTTLVLTFDRVVSKEMHSGVFDVYDLMVPDYGYNFI 163
D + T +K V + V D + I
Sbjct: 193 AYGKIHEPDLAYIMGIIAGDGTITEKTAKIYLYDNKKVLEQKVTDAVHRII 243
gi|3025639 (AF020713) ribunucleotide reductase large subunit [Bacteriophage
SPBc2]
Length = 1084
Score = 119 bits (296), Expect = 1e-26
Identities = 33/171 (19%), Positives = 61/171 (35%), Gaps = 18/171 (10%)
Query: 1 CVSGDTPVLLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVETV 60
CV+G+T +L + G + DL+ + K I + G+ IV+ +
Sbjct: 381 CVTGETLLLTENGYEKAADLYKKQNDLK--VVIDNRTKDFA-------VGSKGTTIVDAI 431
Query: 61 SHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWP---- 116
+ + I V+T+ G E+R T HK +VK + + +++ GD++
Sbjct: 432 PMQLTKKDAE-IFKVKTKQGYEIRATEWHKFYVKRDGEIQKLQLNQLKTGDKLLVQSAEG 490
Query: 117 --SVSENGDSQTV--TTTLVLTFDRVVSKEMHSGVFDVYDLMVPDYGYNFI 163
D + T +K V + V D + I
Sbjct: 491 AYGKIHEPDLAYIMGIIAGDGTITEKTAKIYLYDNKKVLEQKVTDAVHRII 541
dbj|BAA29437| (AP000002) 1291aa long hypothetical ribonucleoside-diphosphate
reductase [Pyrococcus horikoshii]
Length = 1291
Score = 116 bits (288), Expect = 1e-25
Identities = 33/155 (21%), Positives = 55/155 (35%), Gaps = 24/155 (15%)
Query: 1 CVSGDTPVLLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWR------------- 47
CV GDT +L G +I DLF A ++ E I + +
Sbjct: 468 CVVGDTRILTPEGYLKIEDLFRMAKERNNGEKVVAVEGIAEGGEEFAYPVAILLPNEEEK 527
Query: 48 --IYSMVGSEIVET-----VSHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVI 100
IY V + + V ++ + ++T+ G E+ T HK+ K G
Sbjct: 528 EVIYETVHGKQLAIADPIEVKAYVWKVGKKKVARIKTKEGYEIIATLDHKIMTKDG---- 583
Query: 101 ERPASEVNEGDEIAWPSVSENGDSQTVTTTLVLTF 135
+ ++ EGD I P + + + L F
Sbjct: 584 WKAVEDLKEGDLIVLPRFEVEDNFGSESIGEDLAF 618
pdb|1AM2| Gyra Intein From Mycobacterium Xenopi
Length = 199
Score = 114 bits (284), Expect = 3e-25
Identities = 36/215 (16%), Positives = 59/215 (26%), Gaps = 61/215 (28%)
Query: 2 VSGDTPV-LLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVETV 60
++GD V L + RI D+ A + ++ L
Sbjct: 3 ITGDALVALPEGESVRIADIVPGARPNSDNA-----IDLKVLDRHGNPVLADR------- 50
Query: 61 SHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIG----NSVIERPASEVNEGDEIAWP 116
++H + + VRT G V T H L + +++ + E+ GD
Sbjct: 51 ---LFHSGEHPVYAVRTVEGLRVTGTANHPLLCLVDVAGVPTLLWKLIDEIKPGDYAVIQ 107
Query: 117 SVSENGD--------------------------------------SQTVTTTLVLTFDRV 138
+ + D T + +V
Sbjct: 108 RSAFSVDCAGFARGKPEFAPTTYTVGVPGLVRFLEAHHRDPDAKAIADELTDGRFYYAKV 167
Query: 139 VSKEMHSGVFDVYDLMVPDYGYNFIGGNGLIVLHN 173
S +GV VY L V + FI V HN
Sbjct: 168 ASVTD-AGVQPVYSLRVDTADHAFITN--GFVSHN 199
pir||G64488 reverse gyrase (intein-containing) - Methanococcus jannaschii
>gi|1500401 (U67592) reverse gyrase, intein containing
(rgy) [Methanococcus jannaschii]
Length = 1613
Score = 114 bits (283), Expect = 4e-25
Identities = 29/164 (17%), Positives = 60/164 (35%), Gaps = 17/164 (10%)
Query: 1 CVSGDTPVLLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVETV 60
C++ DT V+L G + + + KER + + + + + +T
Sbjct: 867 CLTPDTYVVLGDGRI---ETIEDIVNAKERNVLSLDLDNLSIKI-------------DTA 910
Query: 61 SHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWPSVSE 120
+ + + N E++ TP H L V N + PA ++ E D IA P +
Sbjct: 911 IKFWKLRYNGNLSKITLSNNYELKATPDHCLLVLRDNQLKWIPAKDIKENDYIAMP-FNY 969
Query: 121 NGDSQTVTTTLVLTFDRVVSKEMHSGVFDVYDLMVPDYGYNFIG 164
+ + ++ +L + + + + +Y N I
Sbjct: 970 KVERKPISLLNLLKYLDITDVLIEFDENSTIFEKIAEYIRNNIK 1013
gi|1688292 (U78098) ribonucleotide reductase [Pyrococcus furiosus]
Length = 1740
Score = 114 bits (283), Expect = 4e-25
Identities = 30/152 (19%), Positives = 55/152 (35%), Gaps = 21/152 (13%)
Query: 1 CVSGDTPVLLDAGERRIGDLFMEAIRPKERGEIGQN------------EEIVRLHDXWRI 48
CV GDT +L G + ++F A ++ + EI+ +
Sbjct: 915 CVVGDTRILTPEGYLKAEEIFSLAKERGKKEAVAVEGIAEEGEPYAYSVEILLPGEEKVE 974
Query: 49 YSMVGSEIVE-----TVSHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERP 103
Y V +++ V ++ + V+T+ G E+ T HKL G +
Sbjct: 975 YETVHGKVLAVADPVAVPAYVWKVGRKKVARVKTKEGYEITATLDHKLMTPEG----WKE 1030
Query: 104 ASEVNEGDEIAWPSVSENGDSQTVTTTLVLTF 135
++ EGD+I P + + + L F
Sbjct: 1031 VGKLKEGDKILLPRFEVEEEFGSESIGEDLAF 1062
Score = 74.0 bits (179), Expect = 6e-13
Identities = 25/189 (13%), Positives = 56/189 (29%), Gaps = 39/189 (20%)
Query: 1 CVSGDTPVLLDA--------------GERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXW 46
C+ G ++ + + +G+ + E ++ +
Sbjct: 302 CIDGKAKIIFENEGEEHLTTMEEMYERYKHLGEFYDEEYNRWG-------IDVSNVPIYV 354
Query: 47 RIYSMVGSEIVETVSHAIYHGKSNA---IVNVRTENGREVRVTPVHKLFVK-IGNSVIER 102
+ + +V+ + I+ + + T G ++ +P H FV ++E+
Sbjct: 355 KSFDPESKRVVKGKVNVIWKYELGKDVTKYEIITNKGTKILTSPWHPFFVLTPDFKIVEK 414
Query: 103 PASEVNEGDEIAWPSVSENGDSQTVT--------TTLVLTFD----RVVSKEMHSGVFDV 150
A E+ EGD +G+ FD V E +
Sbjct: 415 RADELKEGD--ILIGGMPDGEDYKFIFDYWLAGFIAGDGCFDKYHSHVKGHEYIYDRLRI 472
Query: 151 YDLMVPDYG 159
YD + +
Sbjct: 473 YDYRIETFE 481
sp|Q58192|TF2B_METJA TRANSCRIPTION INITIATION FACTOR IIB HOMOLOG (TFIIB)
>gi|2129309|pir||F64397 transcription initiation factor
IIB homolog (intein-containing) - Methanococcus
jannaschii >gi|1591481 (U67522) transcription initiation
factor IIB (TFIIB) [Methanococcus jannaschii]
Length = 673
Score = 112 bits (279), Expect = 1e-24
Identities = 25/172 (14%), Positives = 53/172 (30%), Gaps = 16/172 (9%)
Query: 2 VSGDTPVLL----DAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIV 57
V + P+++ + +IG+L + I E EI + + + +
Sbjct: 101 VDYNEPIIIKENGEIKVVKIGELIDKIIENSENIRREGILEIAKCK-GIEVIAFNSNYKF 159
Query: 58 ETVS-HAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWP 116
+ + + + + + E ++VRVT H +F N V+ E+ GD +
Sbjct: 160 KFMPVSEVSRHPVSEMFEIVVEGNKKVRVTRSHSVFTIRDNEVVPIRVDELKVGDILVLA 219
Query: 117 SVSENGDSQTVTTTL----------VLTFDRVVSKEMHSGVFDVYDLMVPDY 158
N + +D + + DY
Sbjct: 220 KELPNIEEDIEIDKKFSKILGYIIAEGYYDDKKIVLSYDYNEKEFINETIDY 271
Score = 50.6 bits (119), Expect = 7e-06
Identities = 24/154 (15%), Positives = 54/154 (34%), Gaps = 14/154 (9%)
Query: 25 IRPKERGEIGQNEEIVRLHDXWRIYSMV-GSEIVETVSHAIYHGKSNAIVNVRTENGREV 83
I K + I +++ + EI ++ I++GK + +
Sbjct: 290 IEVKNKKIINLLKKLRVKNKRIPSIIFKSPYEIKKSFIDGIFNGKDAKVFVSK------- 342
Query: 84 RVTPVHKLF---VKIGNSVIERPASEVNEGDEIAWPSVSENGDSQTVTTTLVLTFDRVVS 140
+ +K ++ ++ +++ + ++ N + + + F ++
Sbjct: 343 ELAEDVIFLLLQIKENATINKKSINDIEVYEVRRITNIYTNRKLEKLINS-DFIFLKIKE 401
Query: 141 KEMHSGV-FDVYDLMVPDYGYNFIGGNGLIVLHN 173
YDL VP+ NF+ G G VLHN
Sbjct: 402 INKVEPTSGYAYDLTVPNAE-NFVAGFGGFVLHN 434
sp|Q58445|RPA1_METJA DNA-DIRECTED RNA POLYMERASE SUBUNIT A' >gi|2826359 (U67547)
DNA-directed RNA polymerase, subunit A' (rpoA1)
[Methanococcus jannaschii]
Length = 1341
Score = 111 bits (275), Expect = 4e-24
Identities = 33/156 (21%), Positives = 53/156 (33%), Gaps = 23/156 (14%)
Query: 1 CVSGDTPVLLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVETV 60
CV GDT VLLD +I DL + K N ++ L W++ +
Sbjct: 460 CVDGDTTVLLDGKLIKIKDLEDKWKDVKVLTSDDLNPKLTSLSKYWKLNADE-------- 511
Query: 61 SHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWPSVSE 120
I ++TE GRE+ T H + G + E+ GDE+
Sbjct: 512 -------YGKKIYKIKTELGREIIATEDHPFYTTNG----RKRCGELKVGDEVI----IY 556
Query: 121 NGDSQTVTTTLVLTFDRVVSKEMHSGVFDVYDLMVP 156
D + D K++ + + Y +
Sbjct: 557 PNDFPMFEDDNRVIVDEEKIKKVINNIGGTYKNKII 592
Score = 39.3 bits (90), Expect = 0.017
Identities = 25/161 (15%), Positives = 55/161 (33%), Gaps = 12/161 (7%)
Query: 16 RIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSM-VGSEIVETVSHAIY-HGKSNAIV 73
+I ++F E K+ E+ + I L ++ + +IY H + +
Sbjct: 760 KIEEIFDEDRFIKDIKEMLKEFGI-ELKVRVEEGNLRKDGYKTKVYVASIYNHKEFFGRI 818
Query: 74 NVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDE-IAWPSVSENGDSQTVTTTLV 132
N +E ++ + + +R ++ + I + + +
Sbjct: 819 GYTYANKKETLARYAYEYLLTKEKYLKDRNIKKLENNTKFITFDKFIKEKCLK-----NG 873
Query: 133 LTFDRVVSKEMHSGVFDVYDLMVPDYGYNFIGGNGLIVLHN 173
+++VS E V VYD+ +NFI + N
Sbjct: 874 FVKEKIVSIEETK-VDYVYDITTISETHNFIAN--GFLTGN 911
pir||A64430 DNA-directed RNA polymerase (EC 2.7.7.6) subunit A'
(intein-containing) - Methanococcus jannaschii
Length = 1345
Score = 111 bits (275), Expect = 4e-24
Identities = 33/156 (21%), Positives = 53/156 (33%), Gaps = 23/156 (14%)
Query: 1 CVSGDTPVLLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVETV 60
CV GDT VLLD +I DL + K N ++ L W++ +
Sbjct: 464 CVDGDTTVLLDGKLIKIKDLEDKWKDVKVLTSDDLNPKLTSLSKYWKLNADE-------- 515
Query: 61 SHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWPSVSE 120
I ++TE GRE+ T H + G + E+ GDE+
Sbjct: 516 -------YGKKIYKIKTELGREIIATEDHPFYTTNG----RKRCGELKVGDEVI----IY 560
Query: 121 NGDSQTVTTTLVLTFDRVVSKEMHSGVFDVYDLMVP 156
D + D K++ + + Y +
Sbjct: 561 PNDFPMFEDDNRVIVDEEKIKKVINNIGGTYKNKII 596
Score = 39.3 bits (90), Expect = 0.017
Identities = 25/161 (15%), Positives = 55/161 (33%), Gaps = 12/161 (7%)
Query: 16 RIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSM-VGSEIVETVSHAIY-HGKSNAIV 73
+I ++F E K+ E+ + I L ++ + +IY H + +
Sbjct: 764 KIEEIFDEDRFIKDIKEMLKEFGI-ELKVRVEEGNLRKDGYKTKVYVASIYNHKEFFGRI 822
Query: 74 NVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDE-IAWPSVSENGDSQTVTTTLV 132
N +E ++ + + +R ++ + I + + +
Sbjct: 823 GYTYANKKETLARYAYEYLLTKEKYLKDRNIKKLENNTKFITFDKFIKEKCLK-----NG 877
Query: 133 LTFDRVVSKEMHSGVFDVYDLMVPDYGYNFIGGNGLIVLHN 173
+++VS E V VYD+ +NFI + N
Sbjct: 878 FVKEKIVSIEETK-VDYVYDITTISETHNFIAN--GFLTGN 915
dbj|BAA30194| (AP000005) 1044aa long hypothetical translation initiation factor
IF-2 [Pyrococcus horikoshii]
Length = 1044
Score = 109 bits (271), Expect = 1e-23
Identities = 24/127 (18%), Positives = 47/127 (36%), Gaps = 10/127 (7%)
Query: 1 CVSGDTP-VLLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVET 59
C+ + +L D G + +LF KE + +E+ +L + V +
Sbjct: 23 CLLPEERVILPDYGPITLEELFNMT---KETVFKDEEKEVRKLGIRMPVAG-VDGRVRLL 78
Query: 60 VSHAIYH-GKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWPSV 118
++ ++ V+ ++ V VTP H G A ++ GD +A P +
Sbjct: 79 EGPYVWKVRYKGKMLRVKLKDWHSVAVTPEHPFLTTRG----WVRADQLKPGDYVAVPKI 134
Query: 119 SENGDSQ 125
D +
Sbjct: 135 LPGKDDK 141
Score = 54.1 bits (128), Expect = 6e-07
Identities = 24/127 (18%), Positives = 41/127 (31%), Gaps = 20/127 (15%)
Query: 55 EIVETVSHAIYHGKSNAIVNVRTENGREVRVTPVHKLF-------VKIGNSVIERPASEV 107
EI+ + + I G + + GR H+ + + E E+
Sbjct: 352 EILMKILNTIEKGSKDLNKKITILEGRV----RDHEYIEEFKREGLIKDGKLTEL-GKEL 406
Query: 108 NEGDEIAWPSVSENGDSQTVTTTLV-LTFDRVVSKEMHSGVFDVYDLMVPDYGYNFIGGN 166
E + ++ D + + F V E VYD V +NFI
Sbjct: 407 LE---VWRNREFDSRDVNYLRNIIENFVFLPVEKIEEFEYDGYVYD--VTTETHNFIAN- 460
Query: 167 GLIVLHN 173
I++HN
Sbjct: 461 -GILVHN 466
dbj|BAA29190.1| (AP000001) 1434aa long hypothetical protein [Pyrococcus horikoshii]
Length = 1434
Score = 109 bits (270), Expect = 1e-23
Identities = 30/179 (16%), Positives = 55/179 (29%), Gaps = 21/179 (11%)
Query: 1 CVSGDTPVLLDAG----ERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVG--S 54
C GDT +L+ + +L+ + ++ ++YS
Sbjct: 955 CFPGDTRILVQINGTPQRVTLKELYELFDEEHYESMVYVRKK---PKVDIKVYSFNPEEG 1011
Query: 55 EIVETVSHAIYHGKSNA-IVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEI 113
++V T + + ++ E G T H + V +E+ A EV EG+ I
Sbjct: 1012 KVVLTDIEEVIKAPATDHLIRFELELGSSFETTVDHPVLVYENGKFVEKRAFEVREGNII 1071
Query: 114 AWPSVSENGDSQTVTTTLVLTFDRVVSKEMHSGVFDVYDLMVPDYGYNFIGGNGLIVLH 172
S + + + VF + + I N IV H
Sbjct: 1072 IIIDESTLEPLKVAVKKIEFI------EPPEDFVFSLNAKKY----HTVII-NENIVTH 1119
dbj|BAA29893| (AP000003) 1624aa long hypothetical reverse gyrase [Pyrococcus
horikoshii]
Length = 1624
Score = 108 bits (267), Expect = 3e-23
Identities = 32/183 (17%), Positives = 56/183 (30%), Gaps = 33/183 (18%)
Query: 1 CVSGDTPV-LLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVET 59
CV+ DT V L D I + A+ E +G N + E
Sbjct: 954 CVTPDTLVSLSDGRIIEIRE----AVENSEESLLGIN-------------GLKPKEAKAL 996
Query: 60 VSHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWP--- 116
I I ++ +NG E++ TP H L V + A + EGD +A+
Sbjct: 997 KFWEIDWD--GPIKVIKLKNGHEIKATPDHGLLVMRDGKIGWVSAKNIREGDYVAFIYNL 1054
Query: 117 -----SVSENGDSQTV--TTTLVLTFDRVVSKEMHSGVFDVYDLMVPD---YGYNFIGGN 166
+ + + ++ + + + Y + I G
Sbjct: 1055 GHRGGKKYTLPQLLKELGISEYENSSSQELNNREQEMDSKQISIELDERFWYIFGVILGK 1114
Query: 167 GLI 169
G +
Sbjct: 1115 GTL 1117
pir||C64440 DNA repair protein RAD24 homolog (intein-containing) -
Methanococcus jannaschii >gi|1499976 (U67555) putative
SKI2-family helicase [Methanococcus jannaschii]
Length = 1195
Score = 106 bits (263), Expect = 9e-23
Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 21/135 (15%)
Query: 1 CVSGDTPVLLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVETV 60
C++ +T +L ++G R+I +L +E++ L + V V
Sbjct: 338 CLNANTEILQESGFRKITELNK-------------DEKVFAL--CGKEIKPVDGWKVHKT 382
Query: 61 SHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWPSVSE 120
Y+ + V+T NG E+ TP H VK S+ E+ A ++ GD +A
Sbjct: 383 PQHEYN------IVVKTVNGLEITTTPNHIFLVKENGSLKEKEAKDLKVGDYVATVDRIR 436
Query: 121 NGDSQTVTTTLVLTF 135
+ + L F
Sbjct: 437 VKEKDIDLSNGDLYF 451
sp|Q58454|YA54_METJA HYPOTHETICAL PROTEIN MJ1054 >gi|2129344|pir||E64431 UDPglucose
6-dehydrogenase (intein-containing) - Methanococcus
jannaschii >gi|1591706 (U67548) UDP-glucose
dehydrogenase, putative [Methanococcus jannaschii]
Length = 895
Score = 103 bits (254), Expect = 1e-21
Identities = 27/169 (15%), Positives = 57/169 (32%), Gaps = 27/169 (15%)
Query: 1 CVSGDTPVLLDAGE----RRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEI 56
C D + +D G +LF K+ +I S G ++
Sbjct: 261 CFHPDEVLFIDRGRGLECITFKELFEL--EDKDNVKI---------------LSFDGEKL 303
Query: 57 VETVSHAIYHGKSNA-IVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAW 115
N ++ +R GRE+++T H + + + + S+V EGD++
Sbjct: 304 SLKKLKLASKRYYNDDLITLRFNLGREIKITKDHPVVILEDGELKIKLTSDVKEGDKVIL 363
Query: 116 PSVSENGDSQTVTTTLVLTFDRVVSKEMHSGVFDVYDLMVPDYGYNFIG 164
P + + + + +SK +++ + +N I
Sbjct: 364 PYGNFGEER-----EIEIDILEELSKTDLIEKVWIHNKDLATNEFNIIK 407
sp|Q49608|GYRA_MYCKA DNA GYRASE SUBUNIT A >gi|1122294|emb|CAA92431| (Z68207) DNA gyrase
subunit A [Mycobacterium kansasii]
Length = 549
Score = 101 bits (249), Expect = 4e-21
Identities = 28/154 (18%), Positives = 47/154 (30%), Gaps = 27/154 (17%)
Query: 1 CVSGDTPV-LLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVET 59
CV+GD V L RI D+ A + E+ L +
Sbjct: 66 CVTGDALVRLPFGQSMRIADVVPGARPNSDNAV-----ELKVLDRHGNPVAADR------ 114
Query: 60 VSHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIG----NSVIERPASEVNEGDEIAW 115
++H + VRT G EV T H L + +++ + E++ D +A
Sbjct: 115 ----LFHSGDHQTYMVRTAEGYEVTGTANHPLLCLVDVGGVPTLLWKLIEEIHPDDYVAL 170
Query: 116 PSVSENG-------DSQTVTTTLVLTFDRVVSKE 142
D+ + VS+
Sbjct: 171 QRTPPMELGPADWHDTMEALLLGAFISEGCVSET 204
Score = 47.1 bits (110), Expect = 8e-05
Identities = 19/62 (30%), Positives = 22/62 (34%), Gaps = 6/62 (9%)
Query: 112 EIAWPSVSENGDSQTVTTTLVLTFDRVVSKEMHSGVFDVYDLMVPDYGYNFIGGNGLIVL 171
IA P V T T + RV S GV VY L V + F+ V
Sbjct: 430 HIADPDVRT---IATDLTDGRFYYARVASVTDT-GVQPVYSLRVDTDDHAFLTN--GFVS 483
Query: 172 HN 173
HN
Sbjct: 484 HN 485
dbj|BAA30209| (AP000005) 1352aa long hypothetical ATP-dependent helicase LHR
[Pyrococcus horikoshii]
Length = 1352
Score = 100 bits (246), Expect = 9e-21
Identities = 26/131 (19%), Positives = 43/131 (31%), Gaps = 23/131 (17%)
Query: 1 CVSGDTPVLLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVETV 60
CVSGD+ VL + G I L I I +
Sbjct: 347 CVSGDSKVLTEKGPVEIRHLNSGMIVG--------------------INGFKSRFVKFQE 386
Query: 61 SHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKI-GNSVIERPASEVNEGDEIAWPSVS 119
H + + + V +RT+ G EV+ T H+ + A + EGD +
Sbjct: 387 LHQVKYQEYG--VKIRTQLGFEVKCTREHRFLTIDKNGELRWVEAWRLKEGDYVGIIRKL 444
Query: 120 ENGDSQTVTTT 130
+ +S+ +
Sbjct: 445 PSPNSKVLILD 455
gi|3309559 (AF042825) DNA topoisomerase I [Pyrococcus furiosus]
Length = 934
Score = 99.3 bits (244), Expect = 2e-20
Identities = 27/180 (15%), Positives = 57/180 (31%), Gaps = 39/180 (21%)
Query: 1 CVSGDTPVLLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVETV 60
C+ DT +L G R+I +L E E+ L ++ +
Sbjct: 189 CLHPDTLILTSQGVRKIKELSREG-------------EVFALDFNLKLSKAKYRLLE--- 232
Query: 61 SHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWP---- 116
+ V +G E+ +T H + V ++ PA ++ E D +
Sbjct: 233 -----RDADEQMYKVTLLDGTELYLTADHPVLVYREGNLAFVPADKLRETDHVVLVLNKS 287
Query: 117 ------------SVSENGDSQTVTTTLVLTFDRVVSKEMHSGVFDVYDLMVPDYGYNFIG 164
++++ + + S +M ++ D+ V + +N G
Sbjct: 288 ARDNYGFLDLLLEITDSQEDYAILENGETLSLH--SLKMLVERGEIKDIAVVGFSHNNFG 345
Score = 45.9 bits (107), Expect = 2e-04
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 126 TVTTTLVLTFDRVVSKEMHSGVFDVYDLMVPDYGYNFIGGNGLIVLHN 173
+ + S E VYDL+V +Y +NFI I +HN
Sbjct: 517 PRILGGDIYIIGIKSIEKFHYKGKVYDLVVENY-HNFIAN--GIAVHN 561
dbj|BAA29741| (AP000003) 1136aa long hypothetical protein [Pyrococcus horikoshii]
Length = 1136
Score = 99.3 bits (244), Expect = 2e-20
Identities = 26/139 (18%), Positives = 51/139 (35%), Gaps = 10/139 (7%)
Query: 9 LLDAGERRIGDLFMEAIRP-KERGEIGQNEEIVRLHDX--WRIYSMVGSEIVETVS-HAI 64
L + IGDL E + ++ E ++ E + L+D + + S+ +
Sbjct: 461 LSNGRFVLIGDLVEELFKKYSDKIERYKDLEYIELNDEDRFEVVSVGPDLKANKHIVSRV 520
Query: 65 YHGK---SNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAW---PSV 118
+ + ++ ++T G EV +T H LF V+ + A + GD +A P
Sbjct: 521 WRRRVREGEKLIRIKTRTGNEVILTRSHPLFAFSNGDVVRKEAGNLKVGDRVAVMMNPPK 580
Query: 119 SENGDSQTVTTTLVLTFDR 137
+ + D
Sbjct: 581 PPQTKAVVDLSIYAKISDY 599
Score = 45.9 bits (107), Expect = 2e-04
Identities = 20/69 (28%), Positives = 29/69 (41%), Gaps = 11/69 (15%)
Query: 109 EGDEIAWPSVSENGDSQTVTTTLVLTFDRVVSKEMHS----GVFDVYDLMVPDYGYNFIG 164
GDE AW + + +D VVS E G+ VYDL V D +N++
Sbjct: 910 VGDEEAWVKAR----RLQLIAEGDVYWDEVVSVEEVDPKELGIEYVYDLTVED-DHNYVA 964
Query: 165 GNGLIVLHN 173
I++ N
Sbjct: 965 N--GILVSN 971
emb|CAA05167| (AJ002066) DNA gyrase subunit A [Mycobacterium malmoense]
Length = 473
Score = 97.3 bits (239), Expect = 6e-20
Identities = 27/153 (17%), Positives = 45/153 (28%), Gaps = 27/153 (17%)
Query: 1 CVSGDTPV-LLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVET 59
C +GD V L RIG+ A + N ++ L
Sbjct: 50 CCTGDALVRLPFGHSVRIGNFVPAACPNSDNAV---NLKV--LDRHGDPV---------- 94
Query: 60 VSHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIG----NSVIERPASEVNEGDEIAW 115
V+ ++H + VRT G EV T H L + +++ + E+ D +
Sbjct: 95 VADQLFHSGEHQTYTVRTAEGYEVTGTSNHPLLCLVDVGGVPTLLWKLIEEIRPDDHVVL 154
Query: 116 PSVSENG-------DSQTVTTTLVLTFDRVVSK 141
D + VS+
Sbjct: 155 QRTPPVEFGPADWHDVMEALLLGAFISEGFVSE 187
Score = 47.1 bits (110), Expect = 8e-05
Identities = 20/73 (27%), Positives = 26/73 (35%), Gaps = 7/73 (9%)
Query: 101 ERPASEVNEGDEIAWPSVSENGDSQTVTTTLVLTFDRVVSKEMHSGVFDVYDLMVPDYGY 160
R + E IA P V T T + +V S +GV VY L V +
Sbjct: 404 WRTSGE-KILSHIADPDVRA---IATDLTDGRFYYAKVASVTE-AGVQPVYSLRVDTDEH 458
Query: 161 NFIGGNGLIVLHN 173
F+ V HN
Sbjct: 459 AFLTN--GFVSHN 469
sp|Q57532|GYRA_MYCLE DNA GYRASE SUBUNIT A >gi|1122296|emb|CAA92430| (Z68206) DNA gyrase
A subunit [Mycobacterium leprae]
>gi|1262357|emb|CAA94713| (Z70722) DNA gyrase A, and
intein [Mycobacterium leprae]
Length = 1273
Score = 96.6 bits (237), Expect = 1e-19
Identities = 26/127 (20%), Positives = 45/127 (34%), Gaps = 20/127 (15%)
Query: 1 CVSGDTPV-LLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVET 59
CVSG++ V LL RIGD+ A + ++ L
Sbjct: 131 CVSGNSLVRLLFGKSIRIGDIVTGAQFNSDNP-----IDLKVLDRHGNPV---------- 175
Query: 60 VSHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIG----NSVIERPASEVNEGDEIAW 115
V+ ++H + VRT G E+ T H L + +++ + E+ GD +
Sbjct: 176 VADYLFHSGEHQTYTVRTTEGYEITGTSNHPLLCLVNVGGIPTLLWKLIGEIRSGDYVVL 235
Query: 116 PSVSENG 122
+
Sbjct: 236 QRIPPVE 242
Score = 41.2 bits (95), Expect = 0.005
Identities = 11/46 (23%), Positives = 18/46 (38%), Gaps = 3/46 (6%)
Query: 128 TTTLVLTFDRVVSKEMHSGVFDVYDLMVPDYGYNFIGGNGLIVLHN 173
T + RV S G+ V+ L V ++F+ + HN
Sbjct: 508 LTDGRFYYARVASVTDT-GIQPVFSLHVDTEDHSFLTN--GFISHN 550
sp|Q49166|GYRA_MYCFV DNA GYRASE SUBUNIT A >gi|1122290|emb|CAA92433| (Z68209) DNA gyrase
subunit A [Mycobacterium flavescens]
Length = 554
Score = 94.6 bits (232), Expect = 4e-19
Identities = 24/127 (18%), Positives = 42/127 (32%), Gaps = 20/127 (15%)
Query: 1 CVSGDTPV-LLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVET 59
CV+GD V L R+ D+ A + ++ L+
Sbjct: 70 CVTGDALVRLPFGQSVRLRDVVAGARSSSDNA-----IDLKVLNRHGDPV---------- 114
Query: 60 VSHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIG----NSVIERPASEVNEGDEIAW 115
V+ ++H + VRT G EV T H L + +++ + E+ GD +
Sbjct: 115 VADKLFHSGEHETYTVRTAEGYEVTGTANHPLLCLVDVGGVPTLLWKLTEEIRPGDHVVL 174
Query: 116 PSVSENG 122
Sbjct: 175 QRTPPTE 181
Score = 50.2 bits (118), Expect = 9e-06
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 126 TVTTTLVLTFDRVVSKEMHSGVFDVYDLMVPDYGYNFIGGNGLIVLHN 173
T + RV S SGV VY L V ++FI V HN
Sbjct: 446 QELTDGRFYYARVASVTD-SGVQPVYSLRVDTDDHSFITN--GFVSHN 490
gi|2335167 (AF006675) DNA helicase [Rhodothermus marinus]
Length = 941
Score = 94.6 bits (232), Expect = 4e-19
Identities = 27/139 (19%), Positives = 45/139 (31%), Gaps = 24/139 (17%)
Query: 1 CVSGDTPV-LLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVET 59
C++GDT + L D I +L + N + L+ + Y + + +
Sbjct: 422 CLAGDTLITLADGRRVPIRELVSQQ-----------NFSVWALNP--QTYRLERARVSRA 468
Query: 60 VSHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWPSVS 119
I + + T GR +R T H+ G + E+ GD +A P
Sbjct: 469 FCTGI-----KPVYRLTTRLGRSIRATANHRFLTPQG----WKRVDELQPGDYLALPRRI 519
Query: 120 ENGDSQTVTTTLVLTFDRV 138
S T L
Sbjct: 520 PTA-STPTLTEAELALLGH 537
emb|CAA74140| (Y13813) helicase [Rhodothermus marinus]
Length = 945
Score = 94.6 bits (232), Expect = 4e-19
Identities = 27/139 (19%), Positives = 45/139 (31%), Gaps = 24/139 (17%)
Query: 1 CVSGDTPV-LLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVET 59
C++GDT + L D I +L + N + L+ + Y + + +
Sbjct: 426 CLAGDTLITLADGRRVPIRELVSQQ-----------NFSVWALNP--QTYRLERARVSRA 472
Query: 60 VSHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWPSVS 119
I + + T GR +R T H+ G + E+ GD +A P
Sbjct: 473 FCTGI-----KPVYRLTTRLGRSIRATANHRFLTPQG----WKRVDELQPGDYLALPRRI 523
Query: 120 ENGDSQTVTTTLVLTFDRV 138
S T L
Sbjct: 524 PTA-STPTLTEAELALLGH 541
sp|Q58815|YE20_METJA HYPOTHETICAL PROTEIN MJ1420 >gi|2127939|pir||C64477
glutamine--fructose-6-phosphate transaminase
(isomerizing) (EC 2.6.1.16) (intein-containing) -
Methanococcus jannaschii >gi|1592069 (U67582)
glucosamine--fructose-6-phosphate aminotransferase
(isomerizing) (glmS) [Methanococcus jannaschii]
Length = 1102
Score = 94.2 bits (231), Expect = 5e-19
Identities = 23/180 (12%), Positives = 52/180 (28%), Gaps = 44/180 (24%)
Query: 1 CVSGDTP-VLLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVET 59
C+ DT +L D ++I ++ +E++ ++ ++
Sbjct: 75 CLHPDTYVILPDGRMKKISEI--------------DEDEVLSVN-------FEDLKLYNK 113
Query: 60 VSHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWPS-- 117
H + ++T E+ T HKLFV ++E+ ++N + I
Sbjct: 114 KIKKFKHKAPKILYKIKTAF-SELITTGEHKLFVVENGKIVEKCVKDLNGSELIGVVRKL 172
Query: 118 -------------------VSENGDSQTVTTTLVLTFDRVVSKEMHSGVFDVYDLMVPDY 158
+ + E GV ++Y + +
Sbjct: 173 NYSFNDNVEFKDVYVERHYKLDETIRNKLRKVREKLGLTRKDVEKLCGVKEIYIVKIETG 232
Score = 48.6 bits (114), Expect = 3e-05
Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 15/90 (16%)
Query: 90 KLFVKIGNS------VIERPASEVNEGDEIAWPSVSENGDSQTVTTTLVLTFDRVVSKEM 143
L IE+ E+N + + + + + +E+
Sbjct: 493 PLKTIKNGDNYCTDYTIEKIIEELNSKGL------YDKAEYLKRFLDADIVWTKFKIEEV 546
Query: 144 HSGVFDVYDLMVPDYGYNFIGGNGLIVLHN 173
S V VYDL V DY +NFIG LI+ HN
Sbjct: 547 ESDVEYVYDLEVEDY-HNFIGN--LIINHN 573
sp|Q49467|GYRA_MYCGO DNA GYRASE SUBUNIT A >gi|1122292|emb|CAA92432| (Z68208) DNA gyrase
subunit A [Mycobacterium gordonae]
Length = 550
Score = 93.4 bits (229), Expect = 9e-19
Identities = 24/153 (15%), Positives = 44/153 (28%), Gaps = 27/153 (17%)
Query: 1 CVSGDTPV-LLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVET 59
C++GD V L RIGD+ A + E+ L
Sbjct: 67 CLTGDALVRLPFGQSMRIGDVAPGARTNSDNAG-----ELKVLDRHGDPVFADR------ 115
Query: 60 VSHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIG----NSVIERPASEVNEGDEIAW 115
++H + V+T G EV T H + + +++ E+ D +
Sbjct: 116 ----LFHSGDHQTFRVQTAEGYEVTGTSNHPVLCLVNLAGVPTLLWMLIEEIRPDDYVVL 171
Query: 116 PSVSENG-------DSQTVTTTLVLTFDRVVSK 141
D+ + +S+
Sbjct: 172 QRAPPVESGPANWRDAMEALLLGAFISEGFMSE 204
Score = 47.1 bits (110), Expect = 8e-05
Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 6/62 (9%)
Query: 112 EIAWPSVSENGDSQTVTTTLVLTFDRVVSKEMHSGVFDVYDLMVPDYGYNFIGGNGLIVL 171
IA P V T T + +V S +GV VY L V + F+ V
Sbjct: 431 RIANPDVRA---IATDLTDGRFYYAQVTSVTE-AGVQPVYSLRVDSEDHAFLTN--GFVS 484
Query: 172 HN 173
HN
Sbjct: 485 HN 486
gi|2621734 (AE000845) ribonucleotide reductase, large subunit
[Methanobacterium thermoautotrophicum]
Length = 703
Score = 90.3 bits (221), Expect = 8e-18
Identities = 39/173 (22%), Positives = 59/173 (33%), Gaps = 39/173 (22%)
Query: 1 CVSGDTPVLLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVETV 60
CVSGDT V+ G R + +L E
Sbjct: 266 CVSGDTIVMTSGGPRTVAEL--------EGKPFTALIRGSGYP----------------C 301
Query: 61 SHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWPSVSE 120
+ + ++RT G +R+T H++ V G + R A E+ GD +
Sbjct: 302 PSGFFRTCERDVYDLRTREGHCLRLTHDHRVLVMDGG-LEWRAAGELERGDRLVMDD--A 358
Query: 121 NGDSQTVTTTLVLTFDRVVSKEMHSGVFDVYDLMVPDYGYNFIGGNGLIVLHN 173
G+ + T L +G DVYD V YG + NG ++HN
Sbjct: 359 AGEFPALATFRGLRG---------AGRQDVYDATV--YGASAFTANG-FIVHN 399
gi|2708498 (AF012906) ribonucleotide reductase homolog [Bacillus subtilis]
Length = 661
Score = 90.3 bits (221), Expect = 8e-18
Identities = 23/119 (19%), Positives = 43/119 (35%), Gaps = 9/119 (7%)
Query: 53 GSEIVETVSHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDE 112
G+ IV+ + + + I V+T+ G E+R T HK +VK + + +++ GD+
Sbjct: 1 GTTIVDAIPMQLTKKDAE-IFKVKTKQGYEIRATEWHKFYVKRDGEIQKLQLNQLKTGDK 59
Query: 113 IAWP------SVSENGDSQTV--TTTLVLTFDRVVSKEMHSGVFDVYDLMVPDYGYNFI 163
+ D + T +K V + V D + I
Sbjct: 60 LLVQSAEGAYGKIHEPDLAYIMGIIAGDGTITEKTAKIYLYDNKKVLEQKVTDAVHRII 118
sp|P71715|DNAB_MYCTU REPLICATIVE DNA HELICASE >gi|3250719|emb|CAB02519| (Z80775) dnaB
[Mycobacterium tuberculosis]
Length = 874
Score = 89.5 bits (219), Expect = 1e-17
Identities = 24/138 (17%), Positives = 40/138 (28%), Gaps = 24/138 (17%)
Query: 1 CVSGDTPVLL--DAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVE 58
C++ T +L E G+L G+ + L + +V
Sbjct: 400 CLTASTRILRADTGAEVAFGELMRS----------GERPMVWSLDE--------RLRMVA 441
Query: 59 TVSHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWPSV 118
++ + +R +GREV T H G P +++ GD IA P
Sbjct: 442 RPMINVFPSGRKEVFRLRLASGREVEATGSHPFMKFEG----WTPLAQLKVGDRIAAPRR 497
Query: 119 SENGDSQTVTTTLVLTFD 136
L
Sbjct: 498 VPEPIDTQRMPESELISL 515
sp|P77966|GYRB_SYNY3 DNA GYRASE SUBUNIT B >gi|1652801|dbj|BAA17720| (D90908) DNA gyrase
B subunit [Synechocystis sp.]
Length = 1078
Score = 89.2 bits (218), Expect = 2e-17
Identities = 28/143 (19%), Positives = 45/143 (30%), Gaps = 20/143 (13%)
Query: 1 CVSGDTPV-LLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVET 59
C SGDT V L D L E + K+ GS VE
Sbjct: 437 CFSGDTLVALTDGRSVSFEQLVEEEKQGKQN--------------FCYTIRHDGSIGVEK 482
Query: 60 VSHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGD-EIAWPSV 118
+ +A + ++ V +NG + TP HK ++ G + A ++ D +
Sbjct: 483 IINARKTKTNAKVIKVTLDNGESIICTPDHKFMLRDG---SYKCAMDLTLDDSLMPLHRK 539
Query: 119 S-ENGDSQTVTTTLVLTFDRVVS 140
DS + +
Sbjct: 540 ISTTEDSGITIDGYEMVWSPRSD 562
Score = 41.6 bits (96), Expect = 0.003
Identities = 25/122 (20%), Positives = 46/122 (37%), Gaps = 14/122 (11%)
Query: 53 GSEIVETVSHAIYHGKSNAIVNVRTENGR-EVRVTPVHKLFVKIGNSVIERPASEVNEGD 111
+ E ++ Y A+ V ENG ++ +++ K + + E
Sbjct: 763 REKRREALAQTYYRKTLAALKQVEIENGYLDISAYDSYRISTKDKSLLRFDRFCE----- 817
Query: 112 EIAWPSVSENGDSQTVTTTLVLTFDRVVSKEMHSGVFDVYDLMVPDYGYNFIGGNGLIVL 171
D ++ R+V+ E S DVYD+ VP + +NF +G+ +
Sbjct: 818 ------RYFENDENLAREAVLNYNHRIVNIEAVSETIDVYDIEVP-HTHNFALASGVF-V 869
Query: 172 HN 173
HN
Sbjct: 870 HN 871
sp|Q57962|PPSA_METJA PROBABLE PHOSPHOENOLPYRUVATE SYNTHASE (PYRUVATE,WATER DIKINASE)
(PEP SYNTHASE) >gi|2129230|pir||F64367 pyruvate,water
dikinase (EC 2.7.9.2) (intein-containing) -
Methanococcus jannaschii >gi|1591246 (U67503)
phosphoenolpyruvate synthase [Methanococcus jannaschii]
Length = 1188
Score = 86.4 bits (211), Expect = 1e-16
Identities = 19/136 (13%), Positives = 49/136 (35%), Gaps = 11/136 (8%)
Query: 1 CVSGDTPVLLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVETV 60
C+ GD +L D G ++ +++ ++ +G N E ++ W+
Sbjct: 411 CIEGDAKILTDRGFLKMKEVYKLVKNGEKLKVLGLNAETLKTE--WKEIIDAQKREARRY 468
Query: 61 SHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAW-PSVS 119
+Y N T++ +++TP HK V + + + ++ + +
Sbjct: 469 EIGVYRKNKN------TKD--TIKITPDHKFPVFVNGELSKVQLCDIIDNNLSVLSIDYI 520
Query: 120 ENGDSQTVTTTLVLTF 135
+ + + V+
Sbjct: 521 PMIEEKYESLAEVMYL 536
sp|Q55418|DNAB_SYNY3 REPLICATIVE DNA HELICASE >gi|1001271|dbj|BAA10516| (D64003)
replicative DNA helicase [Synechocystis sp.]
Length = 872
Score = 86.0 bits (210), Expect = 1e-16
Identities = 26/140 (18%), Positives = 48/140 (33%), Gaps = 25/140 (17%)
Query: 1 CVSGDTPVLL--DAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVE 58
C+SGD+ + L I DL E K+ NE+ ++L + +
Sbjct: 381 CISGDSLISLASTGKRVSIKDLLDE----KDFEIWAINEQTMKLESAKVSRVFCTGKKL- 435
Query: 59 TVSHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWPSV 118
+ ++T GR ++ T H+ G + E++ + IA P
Sbjct: 436 -------------VYILKTRLGRTIKATANHRFLTIDG----WKRLDELSLKEHIALPRK 478
Query: 119 SENGDSQTVTTTLVLTFDRV 138
E+ S + + L
Sbjct: 479 LES-SSLQLMSDEELGLLGH 497
sp|Q58095|Y682_METJA HYPOTHETICAL PROTEIN MJ0682 >gi|2129103|pir||B64385 malT-glpR
intergenic region hypothetical intein-containing protein
homolog MJ0682 - Methanococcus jannaschii >gi|1591397
(U67515) conserved hypothetical protein [Methanococcus
jannaschii]
Length = 968
Score = 86.0 bits (210), Expect = 1e-16
Identities = 25/160 (15%), Positives = 50/160 (30%), Gaps = 36/160 (22%)
Query: 1 CVSGDTPVLLDAGE-RRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVET 59
C++ ++ +L D G ++ L + L +IY+ E
Sbjct: 98 CLTSNSKILTDDGYYIKLEKLKEK------------------LDLHIKIYNTEEGEKSS- 138
Query: 60 VSHAIYHGK-SNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWPSV 118
+ I+ ++TE+GR + + H + G P + EGD++
Sbjct: 139 NILFVSERYADEKIIRIKTESGRVLEGSKDHPVLTLNG----YVPMGMLKEGDDVIV--- 191
Query: 119 SENGDSQTVTTTLVLTFDRVVSKEMHSGVFDVYDLMVPDY 158
+ + + D F YD + Y
Sbjct: 192 YPYEGVEYEEPSDEIILD--------EDDFAEYDKQIIKY 223
Score = 48.6 bits (114), Expect = 3e-05
Identities = 15/58 (25%), Positives = 24/58 (40%), Gaps = 4/58 (6%)
Query: 116 PSVSENGDSQTVTTTLVLTFDRVVSKEMHSGVFDVYDLMVPDYGYNFIGGNGLIVLHN 173
P E + V D++ E S +YD+ + +NFI + IV+HN
Sbjct: 532 PKFEEFIEKYGVI--GGFVIDKIKEIEEISYDSKLYDVGIVSKEHNFIANS--IVVHN 585
dbj|BAA29538| (AP000002) 1127aa long hypothetical ATP-dependent protease La
[Pyrococcus horikoshii]
Length = 1127
Score = 84.1 bits (205), Expect = 6e-16
Identities = 24/146 (16%), Positives = 51/146 (34%), Gaps = 16/146 (10%)
Query: 1 CVSGDTPVLLDAGE----RRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYS--MVGS 54
C SG+ ++++ G+ ++ + +A++ + + ++
Sbjct: 211 CFSGEEVIIVEKGKDRKVVKLREFVEDALKEPSGEGMDGDIKVTYKDLRGEDVRILTKDG 270
Query: 55 EIVETVSHAIYHGKSN-AIVNVR-TENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDE 112
+ + + + + + + VTP HK+F G + A E+ E DE
Sbjct: 271 FV---KLLYVNKREGKQKLRKIVNLDKDYWLAVTPDHKVFTSEGL----KEAGEITEKDE 323
Query: 113 IA-WPSVSENGDSQTVTTTLVLTFDR 137
I P V +G T FD
Sbjct: 324 IIRVPLVILDGPKIASTYGEDGKFDD 349
gi|2738400 (AF003534) putative ribonucleoside-diphosphate reductase large
chain [Chilo iridescent virus]
Length = 959
Score = 82.5 bits (201), Expect = 2e-15
Identities = 28/168 (16%), Positives = 53/168 (30%), Gaps = 38/168 (22%)
Query: 1 CVSGDTPVLLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVETV 60
CV+ +T +L + G+ I DL + I ++ ++ +
Sbjct: 272 CVAPETMILTEDGQFPIKDLEGKII------------KVWNGNEFSSV------------ 307
Query: 61 SHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGD-EIAWPSVS 119
+ G ++ V NG + TP HK + A + D IA
Sbjct: 308 -TVVKTGTEKELLEVELSNGCTLSCTPEHKFIIVK----SYTEAKKQKTDDNAIANAERV 362
Query: 120 ENGDSQTVTTTLVLTFDRVVSKEMHSGVFDVYDLMVPDYGYNFIGGNG 167
+ D + + + +D+ P Y + F G+G
Sbjct: 363 DAQDLKPRMKLIKFDLPTL-------FGNSEHDIKYP-YTHGFFCGDG 402
dbj|BAA30714| (AP000006) 871aa long hypothetical protein [Pyrococcus horikoshii]
Length = 871
Score = 79.0 bits (192), Expect = 2e-14
Identities = 23/134 (17%), Positives = 44/134 (32%), Gaps = 22/134 (16%)
Query: 1 CVSGDTPVLLDAGE-RRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVET 59
C++ T VL + G +I ++ + K + N E +D ++ + E+
Sbjct: 98 CLAPGTRVLTEHGYWLKIEEMPEKF---KLQRLRVYNIE-EGHNDFSKVVFVAEREV--- 150
Query: 60 VSHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWPSVS 119
G + + TE+G+ + + H + G V EGD I
Sbjct: 151 -------GSEEKAIRIVTESGKVIEGSEDHPVLTPEG----YVYLRNVKEGDYILV---Y 196
Query: 120 ENGDSQTVTTTLVL 133
V+
Sbjct: 197 PFEGVPYEEKKGVI 210
Score = 40.5 bits (93), Expect = 0.008
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 138 VVSKEMHSGVFDVYDLMVPDYGYNFIGGNGLIVLHN 173
V S + F YD+ V +NFI IV+HN
Sbjct: 456 VKSVKPEYDKF--YDIGVYHSAHNFIAN--GIVVHN 487
sp|P26345|RECA_MYCTU RECA PROTEIN >gi|98821|pir||S18206 recA protein precursor -
Mycobacterium tuberculosis >gi|44662|emb|CAA41395|
(X58485) RecA [Mycobacterium tuberculosis]
>gi|2624258|emb|CAA15533| (AL008967) recA [Mycobacterium
tuberculosis]
Length = 790
Score = 76.3 bits (185), Expect = 1e-13
Identities = 19/120 (15%), Positives = 37/120 (30%), Gaps = 24/120 (20%)
Query: 1 CVSGDTPVL--LDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVE 58
C++ T + + RI D+ + + +
Sbjct: 252 CLAEGTRIFDPVTGTTHRIEDVVDGRKPIHV------------------VAAAKDGTLHA 293
Query: 59 TVSHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWPSV 118
+ + + ++ +R G V TP HK+ R A E+ +GD +A P
Sbjct: 294 RPVVSWFDQGTRDVIGLRIAGGAIVWATPDHKVLT----EYGWRAAGELRKGDRVAQPRR 349
sp|Q60348|Y043_METJA HYPOTHETICAL PROTEIN MJ0043 >gi|2127759|pir||C64305 ansR 5'-region
hypothetical intein-containing protein homolog MJ0043 -
Methanococcus jannaschii >gi|1498803 (U67462) intein
containing hypothetical protein [Methanococcus
jannaschii]
Length = 785
Score = 75.9 bits (184), Expect = 2e-13
Identities = 28/186 (15%), Positives = 51/186 (27%), Gaps = 62/186 (33%)
Query: 1 CVSGDTPVLLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVETV 60
CV DT ++L+ G +RI D I ++++ + + + VE V
Sbjct: 129 CVPPDTLLILENGFKRIVD-------------IKVGDKVLTHENRF--------KKVEKV 167
Query: 61 SHAIYHGKSNAIVNVRTENG-REVRVTPVHKLFV-------------------------- 93
I+ ++ E+ +TP H ++
Sbjct: 168 Y---KRRYIGDIIKIKVRYFPEEIILTPEHPVYAIKTEKRCDGSHGICKFNCLTQYTNPS 224
Query: 94 ----KIGNSVIERPASEVNEGDEIAWP-------SVSENGDSQTVTTTLVLTFDRVVSKE 142
A ++ GD I +P + D R+ K
Sbjct: 225 CKKRYRKYKREWIIAKDLKVGDVIVYPIPNRVRDIKYLSLDKYLSNIKREFCRSRIPEKI 284
Query: 143 MHSGVF 148
S F
Sbjct: 285 EVSEEF 290
sp|P51333|DNAB_PORPU PROBABLE REPLICATIVE DNA HELICASE >gi|2148006|pir||S73254
replication helicase chain dnaB - Porphyra purpurea
chloroplast >gi|1276799 (U38804) replication helicase
subunit [Porphyra purpurea]
Length = 568
Score = 75.9 bits (184), Expect = 2e-13
Identities = 19/117 (16%), Positives = 39/117 (33%), Gaps = 14/117 (11%)
Query: 62 HAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWP-SVSE 120
I +RT + + + +T HK+ G + ++ D I
Sbjct: 404 AFISRQDKKTTYKIRTNSEKYLELTSNHKILTLRG----WQRCDQLLCNDMITTQIGFEL 459
Query: 121 NGDSQTVTTTLVLTFDRVVSKEMHSGVFDVYDLMVPDYGY----NFIGGNGLIVLHN 173
+ + + + + + E + + V D+ NFI N I++HN
Sbjct: 460 SRKKKYLLNCIPFSL---CNFETLANINISNFQNVFDFAANPIPNFIANN--IIVHN 511
emb|CAA03857| (AJ000012) RecA protein [Mycobacterium tuberculosis]
>gi|2598002|emb|CAA03856| (AJ000011) RecA protein
[Mycobacterium tuberculosis]
Length = 790
Score = 75.9 bits (184), Expect = 2e-13
Identities = 19/120 (15%), Positives = 37/120 (30%), Gaps = 24/120 (20%)
Query: 1 CVSGDTPVL--LDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVE 58
C++ T + + RI D+ + + +
Sbjct: 252 CLAEGTRIFDPVTGTTHRIEDVVDGRKPIHV------------------VAAAKDGTLHA 293
Query: 59 TVSHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWPSV 118
+ + + ++ +R G V TP HK+ R A E+ +GD +A P
Sbjct: 294 RPVVSWFDQGTQDVIGLRIAGGAIVWATPDHKVLT----EYGWRAAGELRKGDRVAQPRR 349
gi|1825709 (U88183) similar to hedgehog proteins [Caenorhabditis elegans]
Length = 615
Score = 73.6 bits (178), Expect = 8e-13
Identities = 32/159 (20%), Positives = 55/159 (34%), Gaps = 43/159 (27%)
Query: 1 CVSGDTPVLLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVETV 60
C SGD V + G + I DL ++++ + + + YS V +
Sbjct: 416 CFSGDMEVETEDGIKMIKDL-------------KIGDKVLSMDEAFVTYSPVIMFL---- 458
Query: 61 SHAIYHGKSNAIVN---VRTENGREVRVTPVHKLFVKI---GNSVIERPASEVNEGDEIA 114
H + I + T NG +++T H ++V + + A EV D I
Sbjct: 459 -----HKRDEEIAEFNLIETANGHSIKLTDNHLIYVSDCRTRSDLKLVAAKEVKMDDCIH 513
Query: 115 W---------------PSVSENGDSQTVTTTLVLTFDRV 138
V E G +T+T + +RV
Sbjct: 514 VTTDSNVVIKKKVSKISKVIETGIYSPLTSTGDIIVNRV 552
gi|2983879 (AE000743) ribonucleotide reductase beta chain [Aquifex aeolicus]
Length = 696
Score = 71.6 bits (173), Expect = 3e-12
Identities = 19/120 (15%), Positives = 31/120 (25%), Gaps = 24/120 (20%)
Query: 1 CVSGDTPVLLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEI-VET 59
C T VL G +L D Y + EI
Sbjct: 230 CFIEGTEVLTKRGFVDFRELRE--------------------DDLVAQYDIETGEISWTK 269
Query: 60 VSHAIYHGKSNAIVNVR-TENGREVRVTPVHKLFV--KIGNSVIERPASEVNEGDEIAWP 116
+ ++ ++ ++ EV T H+ V + P +V A P
Sbjct: 270 PYAYVERDYEGSMYRLKHPKSNWEVVATEGHEFIVRNLKTGKERKEPIEKVKLHPYSAIP 329
sp|Q49689|Y189_MYCLE HYPOTHETICAL 95.7 KD PROTEIN B1496_C2_189 >gi|2145939|pir||S72760
pps1 protein - Mycobacterium leprae >gi|466882 (U00013)
pps1; B1496_C2_189 [Mycobacterium leprae]
Length = 869
Score = 69.7 bits (168), Expect = 1e-11
Identities = 19/142 (13%), Positives = 43/142 (29%), Gaps = 31/142 (21%)
Query: 1 CVSGDTPVLLDA-GERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVET 59
C++ D + + G I D+ +E+ ++ + +++
Sbjct: 202 CLTADARINVKGKGLVSIADVQPG-------------DEVFGVNIGCE---LERGKVLAK 245
Query: 60 VSHAIYHGKSNAIVNVRTENGREVRVTPVHKLFV---KIGNSV-----IERPASEVNEGD 111
V+ + + + GR + T H+ V + P E+ G+
Sbjct: 246 VAS-----GTKPVYEMHVA-GRALEATGNHQFLVARRVEEGKRTRWTAVWAPLEEIESGE 299
Query: 112 EIAWPSVSENGDSQTVTTTLVL 133
IA V + + L
Sbjct: 300 PIAVARVLPDDSGTIFFSESEL 321
emb|CAB16172| (Z99125) intein in MLCL536.28c [Mycobacterium leprae]
Length = 388
Score = 69.7 bits (168), Expect = 1e-11
Identities = 19/142 (13%), Positives = 43/142 (29%), Gaps = 31/142 (21%)
Query: 1 CVSGDTPVLLDA-GERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVET 59
C++ D + + G I D+ +E+ ++ + +++
Sbjct: 1 CLTADARINVKGKGLVSIADVQPG-------------DEVFGVNIGCE---LERGKVLAK 44
Query: 60 VSHAIYHGKSNAIVNVRTENGREVRVTPVHKLFV---KIGNSV-----IERPASEVNEGD 111
V+ + + + GR + T H+ V + P E+ G+
Sbjct: 45 VAS-----GTKPVYEMHVA-GRALEATGNHQFLVARRVEEGKRTRWTAVWAPLEEIESGE 98
Query: 112 EIAWPSVSENGDSQTVTTTLVL 133
IA V + + L
Sbjct: 99 PIAVARVLPDDSGTIFFSESEL 120
emb|CAB16171| (Z99125) hypothetical protein MLCL536.28c [Mycobacterium leprae]
Length = 869
Score = 69.7 bits (168), Expect = 1e-11
Identities = 19/142 (13%), Positives = 43/142 (29%), Gaps = 31/142 (21%)
Query: 1 CVSGDTPVLLDA-GERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVET 59
C++ D + + G I D+ +E+ ++ + +++
Sbjct: 202 CLTADARINVKGKGLVSIADVQPG-------------DEVFGVNIGCE---LERGKVLAK 245
Query: 60 VSHAIYHGKSNAIVNVRTENGREVRVTPVHKLFV---KIGNSV-----IERPASEVNEGD 111
V+ + + + GR + T H+ V + P E+ G+
Sbjct: 246 VAS-----GTKPVYEMHVA-GRALEATGNHQFLVARRVEEGKRTRWTAVWAPLEEIESGE 299
Query: 112 EIAWPSVSENGDSQTVTTTLVL 133
IA V + + L
Sbjct: 300 PIAVARVLPDDSGTIFFSESEL 321
dbj|BAA17547| (D90907) DNA polymerase III subunit [Synechocystis sp.]
Length = 1116
Score = 64.2 bits (154), Expect = 5e-10
Identities = 20/116 (17%), Positives = 40/116 (34%), Gaps = 24/116 (20%)
Query: 1 CVSGDTPVLLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVETV 60
C++GD+ VL G I + +I E++ ++ + +
Sbjct: 130 CLTGDSQVLTRNGLMSI-----------DNPQIKGR-EVLSYNETLQQW-------EYKK 170
Query: 61 SHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWP 116
++++T+N VR T H + + G A + G +I P
Sbjct: 171 VLRWLDRGEKQTLSIKTKN-STVRCTANHLIRTEQG----WTRAENITPGMKILSP 221
sp|P74918|DPOL_THEFM DNA POLYMERASE (POL TFU) >gi|1655695|emb|CAA93738| (Z69882) DNA
polymerase and endonuclease [Thermococcus fumicolans]
Length = 1523
Score = 63.4 bits (152), Expect = 9e-10
Identities = 23/144 (15%), Positives = 36/144 (24%), Gaps = 22/144 (15%)
Query: 2 VSGDTPVLLDAG----ERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIV 57
V+GDT V + I LF +E L + +V
Sbjct: 902 VTGDTEVTIRRNGRIEFVPIEKLFERVDHR------VGEKEYCVLGGVEALTLDNRGRLV 955
Query: 58 ETVSHAI-YHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWP 116
+ H I V N + VT H L + S+V G P
Sbjct: 956 WKKVPYVMRHKTDKRIYRVWFTNSWYLDVTEDHSL-------IGYLNTSKVKPGK----P 1004
Query: 117 SVSENGDSQTVTTTLVLTFDRVVS 140
+ + + +
Sbjct: 1005 LKERLVEVKPEELGGKVKSLITPN 1028
Score = 37.0 bits (84), Expect = 0.088
Identities = 25/156 (16%), Positives = 42/156 (26%), Gaps = 48/156 (30%)
Query: 1 CVSGDTPVLLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVETV 60
C DT V++ + E+ + + G + V+ V
Sbjct: 407 CHPADTKVIVKG------------------KGVVNISEVREGD---YVLGIDGWQKVQRV 445
Query: 61 SHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSV---------IERPASEVNEGD 111
+VN+ NG ++ TP HKL V +V G
Sbjct: 446 WEY---DYEGELVNI---NG--LKCTPNHKLPVVRRTERQTAIRDSLAKSFLTKKVK-GK 496
Query: 112 EIAWPSVSENGDSQTVTTTLVLTFDRVVSKEMHSGV 147
I P + + V +E+ G
Sbjct: 497 LITTP---------LFEKIGKIEREDVPEEEILKGE 523
dbj|BAA18870| (D90917) DNA polymerase III alpha subunit [Synechocystis sp.]
Length = 897
Score = 61.5 bits (147), Expect = 4e-09
Identities = 20/97 (20%), Positives = 34/97 (34%), Gaps = 21/97 (21%)
Query: 1 CVSGDTPVLL-DAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVET 59
C+S T +L + G IG + E I +YS+ V T
Sbjct: 775 CLSFGTEILTVEYGPLPIGKIVSEEINCS-------------------VYSVDPEGRVYT 815
Query: 60 VSHAIYHGKSN-AIVNVRTENGREVRVTPVHKLFVKI 95
+ A +H + ++ E+G +R T H+
Sbjct: 816 QAIAQWHDRGEQEVLEYELEDGSVIRATSDHRFLTTD 852
sp|P42379|CLPP_CHLEU PROBABLE CLPP-LIKE PROTEASE (ENDOPEPTIDASE CLP) >gi|575471 (L29402)
clpP subunit of Clp protease [Chlamydomonas eugametos]
Length = 1010
Score = 59.9 bits (143), Expect = 1e-08
Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 22/94 (23%)
Query: 1 CVSGDTPVLLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVETV 60
C++ D VL G I D + ++++ L + E+
Sbjct: 448 CLTSDHTVLTTRGWIPIAD-------------VTLDDKVAVLDN-------NTGEMSYQN 487
Query: 61 SHAIYH-GKSNAIVNVRTENGREVRVTPVHKLFV 93
++ + V+T G ++ VTP H+++V
Sbjct: 488 PQKVHKYDYEGPMYEVKTA-GVDLFVTPNHRMYV 520
Score = 50.6 bits (119), Expect = 7e-06
Identities = 13/89 (14%), Positives = 26/89 (28%), Gaps = 22/89 (24%)
Query: 85 VTPVHKLFVKIGNSVIERPASEVNEGDEIAWPSVSENGDSQTVTTTLVLTFDRVVSKEMH 144
+T H + G P ++V D++A T +++ +
Sbjct: 449 LTSDHTVLTTRG----WIPIADVTLDDKVAV----------LDNNTGEMSYQNPQKVHKY 494
Query: 145 SGVFDVYDLMVPDYGYNFIGGNGLIVLHN 173
+Y++ G L V N
Sbjct: 495 DYEGPMYEVKT--------AGVDLFVTPN 515
gb|AAC35596| (AF041468) replication helicase subunit [Guillardia theta]
Length = 599
Score = 42.8 bits (99), Expect = 0.002
Identities = 21/108 (19%), Positives = 33/108 (30%), Gaps = 17/108 (15%)
Query: 73 VNVRTENGREVRV---TPVHKLFVKIGNSVIERPASEVNEGDEIAWPSVSENGDSQTVTT 129
V E + V T H + G + E+ D +A + T
Sbjct: 439 YKVVYELDFYISVIVSTVEHYVLTLNG----WKRILELTVDDLVAT---LDIQYLIYNNT 491
Query: 130 TLVLTFDRV--VSKEMHS--GVFDVYDLMVPDYGYNFIGGNGLIVLHN 173
+ L V S +VYD +P NF +++HN
Sbjct: 492 EVDLFSSNVIFSSVINLICMNRINVYDFWIPK-TNNFFVN--ALLVHN 536
gi|1532153 (U61235) ZK [Caenorhabditis elegans]
Length = 485
Score = 40.1 bits (92), Expect = 0.010
Identities = 30/183 (16%), Positives = 60/183 (32%), Gaps = 54/183 (29%)
Query: 1 CVSGDTPVLLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVETV 60
C +G++ V+ AGE+ + DL + ++ + ++ T
Sbjct: 291 CFTGNSKVMTPAGEKSMADL-------------SVGDMVM---------TYEYGKMTYTR 328
Query: 61 SHAIYH---GKSNAIVNVRTENGREVRVTPVHKLF----VKIGNSVIERPASEVNEGDEI 113
+ H A + + TE G + +TP H ++ V ++ A ++ GD +
Sbjct: 329 VASWLHRLPDTKAAFIKLTTEQGAIIDMTPQHFIYKANCVTEEMELVY--AEDMTIGDCL 386
Query: 114 AWPSVSENGDSQTVTTTLVLTFDRVVSKEMHSGVFDVY-------DLMVPD---YGYNFI 163
+S++ VY DL+V D +N +
Sbjct: 387 MV-------------KENEKLVMTTISEKSTFYETGVYAPMTETGDLIVDDVYASCHNVV 433
Query: 164 GGN 166
N
Sbjct: 434 KAN 436
gi|2731171 (U21308) similar to hedgehog-like cell-cell signaling proteins
[Caenorhabditis elegans]
Length = 484
Score = 40.1 bits (92), Expect = 0.010
Identities = 30/183 (16%), Positives = 60/183 (32%), Gaps = 54/183 (29%)
Query: 1 CVSGDTPVLLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVETV 60
C +G++ V+ AGE+ + DL + ++ + ++ T
Sbjct: 290 CFTGNSKVMTPAGEKSMADL-------------SVGDMVM---------TYEYGKMTYTR 327
Query: 61 SHAIYH---GKSNAIVNVRTENGREVRVTPVHKLF----VKIGNSVIERPASEVNEGDEI 113
+ H A + + TE G + +TP H ++ V ++ A ++ GD +
Sbjct: 328 VASWLHRLPDTKAAFIKLTTEQGAIIDMTPQHFIYKANCVTEEMELVY--AEDMTIGDCL 385
Query: 114 AWPSVSENGDSQTVTTTLVLTFDRVVSKEMHSGVFDVY-------DLMVPD---YGYNFI 163
+S++ VY DL+V D +N +
Sbjct: 386 MV-------------KENEKLVMTTISEKSTFYETGVYAPMTETGDLIVDDVYASCHNVV 432
Query: 164 GGN 166
N
Sbjct: 433 KAN 435
gi|1532155 (U61236) M75 [Caenorhabditis elegans]
Length = 557
Score = 36.2 bits (82), Expect = 0.15
Identities = 26/133 (19%), Positives = 40/133 (29%), Gaps = 35/133 (26%)
Query: 1 CVSGDTPV-LLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVET 59
C GD V + + G +R+ +L + D + GS++
Sbjct: 346 CFPGDAMVNVYNGGFKRMDEL--------------------AVGDWVQALDKNGSQVTFI 385
Query: 60 VSHAIYHGKSNAI---VNVRTENGREVRVTPVHKLFVK---------IGNSVIERPASEV 107
H + V +NG +T H +FV + PA V
Sbjct: 386 PVQYWLHRDPKQVADFVEFTLDNGETFSLTEKHLVFVTQCSVPYSEDENINANPVPAERV 445
Query: 108 NEGD--EIAWPSV 118
N GD IA
Sbjct: 446 NIGDCFYIAHRKK 458
emb|CAB04405| (Z81540) similar to Hint module; cDNA EST EMBL:D67840 comes from
this gene; cDNA EST EMBL:D64725 comes from this gene;
cDNA EST yk317c5.3 comes from this gene [Caenorhabditis
elegans]
Length = 868
Score = 36.2 bits (82), Expect = 0.15
Identities = 20/129 (15%), Positives = 44/129 (33%), Gaps = 36/129 (27%)
Query: 1 CVSGDTPVLLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVETV 60
C S DT V +G++R+ ++ + + + T
Sbjct: 664 CFSSDTLVTTPSGKKRMDEI----------------------DVGDYVLTANRVKTHFTP 701
Query: 61 SHAIYHGKSNAI---VNVRTENGREVRVTPVHKLF---VKIGNSVIE--------RPASE 106
H +S + + + TE G +++TP+H ++ + ++ AS
Sbjct: 702 VTLWIHRESEKLEEFLTITTERGSTLQLTPLHFMYRTKCNESSEFLKILPENHEAILASY 761
Query: 107 VNEGDEIAW 115
+ GD +
Sbjct: 762 LEIGDCVIL 770
sp|Q60370|Y065_METJA HYPOTHETICAL PROTEIN MJ0065 >gi|2128106|pir||A64308 hypothetical
protein MJ0065 - Methanococcus jannaschii >gi|1498827
(U67464) conserved hypothetical protein [Methanococcus
jannaschii]
Length = 363
Score = 35.8 bits (81), Expect = 0.20
Identities = 18/153 (11%), Positives = 43/153 (27%), Gaps = 12/153 (7%)
Query: 27 PKERGEIGQNEEIV---RLHDXWRIYSMVGSEIVETVSHAIYHGKSNAIVNVRTENGREV 83
+ +I + L+ G E+ E + NG V
Sbjct: 120 NDDNSKIVKEIANYLSKELNLKIEKCISNGLEVWEKEGRVFRKVHGVDVGEAILVNGIVV 179
Query: 84 -RVTPVHKLFVKIGNSVIERPASEVNEGDEIAWPSVSENGD-SQTVTTTLVLTF---DRV 138
+ + + +++ E+ EG +N D + V T +L +
Sbjct: 180 GKAKSNEVILIAENGKLVDIIGGELKEGG----IEKLKNVDLKKAVIKTGILRRHPTNPK 235
Query: 139 VSKEMHSGVFDVYDLMVPDYGYNFIGGNGLIVL 171
+ + + + + I G++ +
Sbjct: 236 IESKEIDEGYTIIINHAGEDVIEMIKNKGVVAV 268
pir||A55521 hypothetical protein (virR 5' region) - Clostridium perfringens
(fragment) >gi|473706|dbj|BAA03591| (D14877)
Hypothetical protein similar to orf10 of plasmid pIP404
[Clostridium perfringens]
Length = 257
Score = 35.4 bits (80), Expect = 0.26
Identities = 29/191 (15%), Positives = 52/191 (27%), Gaps = 37/191 (19%)
Query: 1 CV---SGDTPVLLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIV 57
C + D + + G IG L EAI KE I N + D + + +
Sbjct: 66 CFCEATEDVRIYREKGPDLIGKLIAEAINEKE---IEGNIKPEGQEDSLKEKFLKSTNTK 122
Query: 58 ET-------VSHAIYHGKSNAIVNVRTENGREVRVTP---VHKLF---------VKIGNS 98
+IY I G +RV P +K + I +
Sbjct: 123 AIANLDPRDNPSSIYKD-LGEIYK-----GERIRVLPEICDNKDYLPIIYWKDTTNIESQ 176
Query: 99 VIERPASEVNEGDEIAWPSVSENGDSQTVTTTLVLTFDRVVSKEMHSGVFDVYDLMVPDY 158
+ A + + + + + + T + R +Y +
Sbjct: 177 KVWVSAKQ----NYLKIDTNATVINVVTELDARYIKSQRSSKMGYVKNGERLYVHKIESG 232
Query: 159 GY--NFIGGNG 167
+ NG
Sbjct: 233 YALGTYFASNG 243
gi|2983494 (AE000717) long-chain-fatty-acid CoA ligase [Aquifex aeolicus]
Length = 823
Score = 35.4 bits (80), Expect = 0.26
Identities = 21/152 (13%), Positives = 47/152 (30%), Gaps = 20/152 (13%)
Query: 14 ERRIGDLFMEAIRPKERGEIGQNEEI-VRLHDXWRIYSMVGSEIVETVSHAIYHGKSNAI 72
++ +L +E + +++ L + R+ V + + +
Sbjct: 444 FEKVKEL--GITNLEETIKWEVIDKVNRELPEWKRVVGFK------IVKTELPKTRLGKL 495
Query: 73 VNVRT----ENGREVRV--TPVHKLFVKIGNSVIE-----RPASEVNEGDEIAWPSVSEN 121
E E++ T + +F +I+ EV GD + ++
Sbjct: 496 RRFLLPQIYEKAEEIKEEKTEDYSVFETEEGRIIKEFLEKISQKEVKPGDHLEIDLGLDS 555
Query: 122 GDSQTVTTTLVLTFDRVVSKEMHSGVFDVYDL 153
+ + F +S+E S V DL
Sbjct: 556 LAKVELLGFIETNFGVSLSEEELSKNLVVKDL 587
emb|CAB11106.1| (Z98547) predicted using hexExon; MAL3P3.5 (PFC0345w), Hypothetical
protein, len: 1712 aa [Plasmodium falciparum]
Length = 1711
Score = 35.0 bits (79), Expect = 0.34
Identities = 14/153 (9%), Positives = 39/153 (25%), Gaps = 14/153 (9%)
Query: 23 EAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVETVSHAIYHGKSNAIVNVRTENGRE 82
+ K I + ++ + E + S + ++
Sbjct: 187 KLHNNKSNHIINVASSGLYENN----VKFNDIILKEKDKWLVELDNS---IPIKIREKCS 239
Query: 83 VRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWPSV--SENGDSQTVTTTLVLTFDRVVS 140
V T + +V A + D + + ++ + + + + +
Sbjct: 240 VH-TKEYIKYVCKTCKYTLLCADCL-LNDPVHVQNKMENDMNIIKNDMNIMENDMNIMEN 297
Query: 141 ---KEMHSGVFDVYDLMVPDYGYNFIGGNGLIV 170
+ D+ + N I N I+
Sbjct: 298 DMNIIKNDMNIMEKDMNIIKNDMNIIKNNMNII 330
pir||S49554 hypothetical protein 10C - Clostridium perfringens >gi|498840
(U04966) ORF10C [Clostridium perfringens]
Length = 337
Score = 34.6 bits (78), Expect = 0.45
Identities = 29/191 (15%), Positives = 53/191 (27%), Gaps = 37/191 (19%)
Query: 1 CV---SGDTPVLLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIV 57
C + D + + G IG L EAI KE I +N + D + + +
Sbjct: 146 CFCEATEDVRIYREKGPDLIGKLIAEAINEKE---IEENIKPEGQEDSLKEKFLKSTNTK 202
Query: 58 ET-------VSHAIYHGKSNAIVNVRTENGREVRVTP---VHKLF---------VKIGNS 98
+IY I G +RV P +K + I +
Sbjct: 203 AIANLDPRDNPSSIYKD-LGEIYK-----GERIRVLPEICDNKDYLPIIYWKDTTNIESQ 256
Query: 99 VIERPASEVNEGDEIAWPSVSENGDSQTVTTTLVLTFDRVVSKEMHSGVFDVYDLMVPDY 158
+ A + + + + + + T + R +Y +
Sbjct: 257 KVWVSAKQ----NYLKIDTNATVINVVTELDARYIKSQRSSKMGYVKNGERLYVHKIESG 312
Query: 159 GY--NFIGGNG 167
+ NG
Sbjct: 313 YALGTYFASNG 323
gi|2688775 (AE001181) isoleucyl-tRNA synthetase (ileS) [Borrelia burgdorferi]
Length = 1042
Score = 34.6 bits (78), Expect = 0.45
Identities = 25/153 (16%), Positives = 55/153 (35%), Gaps = 6/153 (3%)
Query: 19 DLFMEAIRPKERGEIGQNEEIV--RLHDXWRIYSMVGSEIVETVSHAIYHGKSNAIVNVR 76
++ ++ I KE EE++ + ++ + ++ VS I K+ I+ +
Sbjct: 848 EIILDEINAKEMKIKANEEELITYKAKANFKELGKKLGKDMKAVSTEISKLKNEDIIKII 907
Query: 77 TENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWPSVSENGDSQTVTTTLVLTFD 136
E++V K ++ + + ++ER E E ++ G +T L L
Sbjct: 908 NGTSYEIKV-ANAKHYLSLNDIILER---EEKENLKVINEESITIGIDSLITKELYLEGL 963
Query: 137 RVVSKEMHSGVFDVYDLMVPDYGYNFIGGNGLI 169
+ + V D +I N +
Sbjct: 964 TREFVRQIQNLRKEKNFDVSDRINLYIENNETL 996
gi|2983239 (AE000699) penicillin binding protein 1A [Aquifex aeolicus]
Length = 726
Score = 34.6 bits (78), Expect = 0.45
Identities = 11/105 (10%), Positives = 27/105 (25%), Gaps = 14/105 (13%)
Query: 60 VSHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWPSVS 119
V +++ R K++ I + + EG +
Sbjct: 263 VKSYVFNKYGEIAYKGRL------------KIYTTIDLDYQKIAQKSLEEG-LKRVAKII 309
Query: 120 ENGDSQTVTTTLVLTFDRVVSKEMHSGVFDVYDLMVPDYGYNFIG 164
+ L +++ + +Y + Y NF+
Sbjct: 310 GLPFLPKSEEDMELAYEKEAQLKRLK-RGKIYVAKILKYDGNFMK 353
pir||H64464 hypothetical protein MJ1321 - Methanococcus jannaschii >gi|1591961
(U67572) M. jannaschii predicted coding region MJ1321
[Methanococcus jannaschii]
Length = 713
Score = 34.2 bits (77), Expect = 0.58
Identities = 14/100 (14%), Positives = 30/100 (30%), Gaps = 13/100 (13%)
Query: 23 EAIRPKERGEI---GQNEEIVRLHDXWRIYSMVGSEIVETVSHAIY--------HGKSNA 71
I K++ + + ++++ D + I + G +
Sbjct: 49 MIINKKDKSFVLPYKVDNKVLKYKDGNNEIPIDIEYIKSLKLEYVKPEIAEKLVRGYLKS 108
Query: 72 IVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGD 111
+ + E R ++ HK V V EV + D
Sbjct: 109 VHKIEPELSRIIKNIRKHK--VVENIKVESYCEYEVKKHD 146
emb|CAB03509| (Z81142) similar to Hint module [Caenorhabditis elegans]
Length = 481
Score = 34.2 bits (77), Expect = 0.58
Identities = 17/119 (14%), Positives = 38/119 (31%), Gaps = 24/119 (20%)
Query: 1 CVSGDTPVLLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVETV 60
C D V +++ +A++ + EIG + + L + + + +
Sbjct: 314 CFPNDAVV----------NVYEKAVKRMDELEIG--DWVEALDENGEDITFLPVKYWL-- 359
Query: 61 SHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKI------GNSVIE--RPASEVNEGD 111
+ + +NG +T H ++ + A +VN GD
Sbjct: 360 --HRDPEQEAEFLEFSLDNGETFTLTEKHLVYTTECRQNSSELKISWESISAGKVNAGD 416
emb|CAA09303| (AJ010646) calcium ATPase [Caenorhabditis elegans]
Length = 1237
Score = 34.2 bits (77), Expect = 0.58
Identities = 12/84 (14%), Positives = 29/84 (34%), Gaps = 4/84 (4%)
Query: 80 GREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWPSV---SENGDSQTVTTTLVLTFD 136
G + ++ H+ FV G ++ +E+ GD IA + + L +
Sbjct: 153 GLQAKIETEHRFFVLRGGQSVQVVVNELVVGD-IAQIKYGDLIPSDGIIIQSNDLKMDES 211
Query: 137 RVVSKEMHSGVFDVYDLMVPDYGY 160
+ + +D ++ +
Sbjct: 212 SLTGESDQIRKSPEHDPIILSGTH 235
sp|P22258|SLAP_ACEKI CELL SURFACE PROTEIN PRECURSOR (S-LAYER PROTEIN)
>gi|94471|pir||A34355 cell surface protein precursor -
Acetogenium kivui >gi|141845 (M31069) S-layer protein
precursor [Acetogenium kivui]
Length = 762
Score = 33.8 bits (76), Expect = 0.76
Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 15/110 (13%)
Query: 48 IYSMVGSEIVETV---SHAIYHGKSNAIVNVRTENGREVRVTPVHKLFV---KIGNSVIE 101
+Y ++ V ++ +Y+G + V + G EV + + L V ++++
Sbjct: 296 VYKNDDNKTAIKVDDNAYVLYNGYLTKVSKVTVKEGAEVTIINNNYLIVNGSYDNSTIVY 355
Query: 102 RPASEVNEGDEIAWPSVSENGDSQTVTTTLVLTFDRVVSKEMHSGVFDVY 151
++V GD N DS V V +Y
Sbjct: 356 ---NDVQSGD------KYLNRDSNYELKGTVTVTGAVSKVTDIKANDYIY 396
sp|Q57602|Y138_METJA HYPOTHETICAL PROTEIN MJ0138 >gi|2128146|pir||B64317 hypothetical
protein MJ0138 - Methanococcus jannaschii >gi|1498907
(U67471) cobyric acid synthase (cbiP) [Methanococcus
jannaschii]
Length = 482
Score = 33.8 bits (76), Expect = 0.76
Identities = 10/72 (13%), Positives = 23/72 (31%), Gaps = 3/72 (4%)
Query: 6 TPVLLDAGERRIGDLFMEAIR-PKERGEIGQNEEIVR--LHDXWRIYSMVGSEIVETVSH 62
T ++ + + I DL I N+++ + ++ I + +
Sbjct: 23 TKIITENNYKEIKDLDALIIPGGSLIESKSLNDDLKKEIINFNGYIIGICSGFQILAKKI 82
Query: 63 AIYHGKSNAIVN 74
I S I+
Sbjct: 83 DIGRKSSVPIIK 94
pir||S48106 neurotoxin type E - Clostridium botulinum (fragment)
>gi|407785|emb|CAA50149| (X70818) botulinum neurotoxin
type E [Clostridium botulinum]
Length = 367
Score = 33.5 bits (75), Expect = 1.0
Identities = 17/154 (11%), Positives = 48/154 (31%), Gaps = 16/154 (10%)
Query: 26 RPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVETVSHAIYHGKSNAIVN--------VRT 77
K + N + + W+ T + ++ + + ++T
Sbjct: 43 DNKNKVIKAINNALKERDEKWKEVYSFIVSNWMTKINTQFNKRKEQMYQALQNQVNAIKT 102
Query: 78 ENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWPSV-SENGDSQTVTTTLVLTFD 136
+ + + ++ N + + ++ + + V + T +++
Sbjct: 103 -----IIESKYNSYTLEEKNELTNK--YDIKQIENELNQKVSIAMNNIYRFLTESSISYL 155
Query: 137 RVVSKEMHSGVFDVYDLMVPDYGYNFIGGNGLIV 170
+ E+ YD V Y N+I +G I+
Sbjct: 156 MKLINEVKINKLREYDENVKTYLLNYIIQHGSIL 189
gi|485141 (U00054) similar to cell adhesion molecule, especially extracellular
domain of LAR protein [Caenorhabditis elegans]
Length = 13055
Score = 33.5 bits (75), Expect = 1.0
Identities = 24/145 (16%), Positives = 47/145 (31%), Gaps = 19/145 (13%)
Query: 28 KERGEIGQNEEIVRLHDXWRIYSMVGSEIV-----ETVSHAIYHGKS--------NAIVN 74
K+ I + + V+ + + G+++ E V + I+
Sbjct: 2137 KKGKPIDSSGKPVKFDENGDPIAPEGTKLEKNDNGEWVYPLVDRNGKPLPVDENNKPIIT 2196
Query: 75 VRTENGREVRVTPVHKLFVKIGNSVIERPASEV-NEGDEIAWPSVSENGDSQTVTTTLVL 133
V ++GR V T G + ++ DE P N + Q V + +
Sbjct: 2197 VIDKDGRVVTETDDGTFVTSDG---KQVEVDDLGRPLDEDGNPYK-TNENGQFVISDVDG 2252
Query: 134 TFDRVVSKEMHSGVFDVYDLMVPDY 158
+ +E V +Y + V D
Sbjct: 2253 AVEG-DDEEEQPQVIPLYVVDVDDD 2276
gi|3377724 (AF079365) silent surface layer protein [Lactobacillus crispatus]
Length = 452
Score = 33.5 bits (75), Expect = 1.0
Identities = 7/84 (8%), Positives = 23/84 (27%), Gaps = 2/84 (2%)
Query: 25 IRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVETVSHAIYHGKSNAIVNVRTENGREVR 84
+ ++ ++ ++ G++ + +Y V + G EV
Sbjct: 362 KKIGDKNFYEVIKDGKATSMYINADNIDGTKRTLKHNAYVYKTSKKRANKVVLKKGEEV- 420
Query: 85 VTPVHKLFVKIGNSVIERPASEVN 108
T + + ++
Sbjct: 421 -TTYGGTYTFKNGKQYYKIGNDTK 443
emb|CAB11104.1| (Z98547) predicted using hexExon; MAL3P3.3 (PFC0335c), Hypothetical
protein, len: 3725 aa [Plasmodium falciparum]
Length = 3724
Score = 33.5 bits (75), Expect = 1.0
Identities = 19/154 (12%), Positives = 44/154 (28%), Gaps = 7/154 (4%)
Query: 19 DLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVETVSHAIYHGKSNAIVNVRTE 78
+ ++ + + IY + I + + IY N I +
Sbjct: 787 ESINNIYDESINNIYDESINNIYDENINNIYDENINNIYDENINNIYDEGINKICDDNIL 846
Query: 79 NGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWPSVSENGDSQTVTTTLVLTFDRV 138
+ ++ T + V+ N IE+ ++ +I + +
Sbjct: 847 ENKNIKTTND-IVQVEENNESIEKNELMISLNKDINNTYNMFKENVDIFINKIKRESLLK 905
Query: 139 VSKEMHSGVFDVYDLMVPDYGYNFIGGNGLIVLH 172
+ K + D +Y + N I+ H
Sbjct: 906 IDKNIKDNNND------DEYIMDNFYENDFIINH 933
emb|CAA50146| (X70815) botulinum neurotoxin type E [Clostridium botulinum]
Length = 367
Score = 33.1 bits (74), Expect = 1.3
Identities = 17/154 (11%), Positives = 48/154 (31%), Gaps = 16/154 (10%)
Query: 26 RPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVETVSHAIYHGKSNAIVN--------VRT 77
K + N + + W+ T + ++ + + ++T
Sbjct: 43 DNKNKVIKAINNALKERDEKWKEVYSFIVSNWMTKINTQFNKRKEQMYQALQNQVNAIKT 102
Query: 78 ENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWPSV-SENGDSQTVTTTLVLTFD 136
+ + + ++ N + + ++ + + V + T +++
Sbjct: 103 -----IIESKYNSYTLEEKNELTNK--YDIKQIENELNQKVSIAMNNIDRFLTESSISYL 155
Query: 137 RVVSKEMHSGVFDVYDLMVPDYGYNFIGGNGLIV 170
+ E+ YD V Y N+I +G I+
Sbjct: 156 MKLINEVKINKLREYDENVKTYLLNYIIQHGSIL 189
sp|Q00496|BXE_CLOBO BOTULINUM NEUROTOXIN TYPE E PRECURSOR (BONT/E) (BONTOXILYSIN E)
>gi|80487|pir||JH0257 botulinum neurotoxin type E
precursor - Clostridium botulinum (strain Beluga)
>gi|40394|emb|CAA43999| (X62089) botulinum neurotoxin
type E [Clostridium botulinum]
Length = 1251
Score = 33.1 bits (74), Expect = 1.3
Identities = 17/154 (11%), Positives = 48/154 (31%), Gaps = 16/154 (10%)
Query: 26 RPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVETVSHAIYHGKSNAIVN--------VRT 77
K + N + + W+ T + ++ + + ++T
Sbjct: 658 DNKNKVIKAINNALKERDEKWKEVYSFIVSNWMTKINTQFNKRKEQMYQALQNQVNAIKT 717
Query: 78 ENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWPSV-SENGDSQTVTTTLVLTFD 136
+ + + ++ N + + ++ + + V + T +++
Sbjct: 718 -----IIESKYNSYTLEEKNELTNK--YDIKQIENELNQKVSIAMNNIDRFLTESSISYL 770
Query: 137 RVVSKEMHSGVFDVYDLMVPDYGYNFIGGNGLIV 170
+ E+ YD V Y N+I +G I+
Sbjct: 771 MKIINEVKINKLREYDENVKTYLLNYIIQHGSIL 804
pir||S21178 botulinum neurotoxin type E precursor - Clostridium botulinum
>gi|40398|emb|CAA44558| (X62683) botulinum neurotoxin
type E [Clostridium botulinum]
Length = 1252
Score = 33.1 bits (74), Expect = 1.3
Identities = 17/154 (11%), Positives = 48/154 (31%), Gaps = 16/154 (10%)
Query: 26 RPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVETVSHAIYHGKSNAIVN--------VRT 77
K + N + + W+ T + ++ + + ++T
Sbjct: 658 DNKNKVIKAINNALKERDEKWKEVYSFIVSNWMTKINTQFNKRKEQMYQALQNQVNAIKT 717
Query: 78 ENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWPSV-SENGDSQTVTTTLVLTFD 136
+ + + ++ N + + ++ + + V + T +++
Sbjct: 718 -----IIESKYNSYTLEEKNELTNK--YDIKQIENELNQKVSIAMNNIDRFLTESSISYL 770
Query: 137 RVVSKEMHSGVFDVYDLMVPDYGYNFIGGNGLIV 170
+ E+ YD V Y N+I +G I+
Sbjct: 771 MKLINEVKINKLREYDENVKTYLLNYIIQHGSIL 804
gi|1418290 (U61288) CE [Caenorhabditis elegans]
Length = 790
Score = 33.1 bits (74), Expect = 1.3
Identities = 15/105 (14%), Positives = 34/105 (32%), Gaps = 15/105 (14%)
Query: 42 LHDXWRIYSMVGSEIVETVSHAIYHGKSNAI---VNVRTENGREVRVTPVHKLFVKIGNS 98
+ + + + T H + + + + TE G+ +R+T H ++
Sbjct: 604 IDIGDYVLTADLEKTYFTPITLWIHREPEKVQEFLTIMTEYGKTLRITSRHFMYRNKCGK 663
Query: 99 -----VIERP-------ASEVNEGDEIAWPSVSENGDSQTVTTTL 131
+ P AS++ GD + + + T T
Sbjct: 664 SYPQYIKMLPHDGEAIFASDLEVGDCVVVLYKGKYRQQKIETITR 708
gi|2650494 (AE001096) copper-transporting ATPase, P-type (copB) [Archaeoglobus
fulgidus]
Length = 690
Score = 33.1 bits (74), Expect = 1.3
Identities = 11/79 (13%), Positives = 25/79 (30%), Gaps = 6/79 (7%)
Query: 94 KIGNSVIERPASEVNEGDEIAWPSVSENGDSQTVTTTLVLTFDRVVSKEMHSGVFDVYDL 153
++E + GD++ + +V+ + V++ M +G
Sbjct: 196 LKDGEIVEVKVENLKPGDKVLV-----KPGEKIPVDGIVVEGESFVNEAMLTGESKPVAK 250
Query: 154 MV-PDYGYNFIGGNGLIVL 171
I G G +V+
Sbjct: 251 KPGDTVIGGAINGEGSLVV 269
emb|CAA92000| (Z68008) Groundhog gene, containing 4 repeats of the Ground domain
and one Hog domain; cDNA EST EMBL:T00762 comes from this
gene; cDNA EST EMBL:D34193 comes from this gene; cDNA EST
EMBL:D37242 comes from this gene; cDNA EST EM...
Length = 1226
Score = 33.1 bits (74), Expect = 1.3
Identities = 15/105 (14%), Positives = 34/105 (32%), Gaps = 15/105 (14%)
Query: 42 LHDXWRIYSMVGSEIVETVSHAIYHGKSNAI---VNVRTENGREVRVTPVHKLFVKIGNS 98
+ + + + T H + + + + TE G+ +R+T H ++
Sbjct: 1040 IDIGDYVLTADLEKTYFTPITLWIHREPEKVQEFLTIMTEYGKTLRITSRHFMYRNKCGK 1099
Query: 99 -----VIERP-------ASEVNEGDEIAWPSVSENGDSQTVTTTL 131
+ P AS++ GD + + + T T
Sbjct: 1100 SYPQYIKMLPHDGEAIFASDLEVGDCVVVLYKGKYRQQKIETITR 1144
ref|NP_004577.1|PRPS6KA3| ribosomal protein S6 kinase, 90kD, polypeptide 3
>gi|1730070|sp|P51812|KS62_HUMAN RIBOSOMAL PROTEIN S6
KINASE II ALPHA 2 (S6KII-ALPHA) (P90-RSK 2)
(INSULIN-STIMULATED PROTEIN KINASE 1) (ISPK-1)
>gi|2117821|pir||I38556 insulin-stimulated protein
kinase 1 - human >gi|475588 (U08316) insulin-stimulated
protein kinase 1 [Homo sapiens]
Length = 740
Score = 32.7 bits (73), Expect = 1.7
Identities = 18/176 (10%), Positives = 45/176 (25%), Gaps = 31/176 (17%)
Query: 4 GDTPVLLDAGERRIGDL-----FMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVE 58
G+ + E I ++ E + + +++ +++ + +
Sbjct: 34 GEEEINPQTEEVSIKEIAITHHVKEGHEKADPSQFEL-LKVLGQGSFGKVFLVKKISGSD 92
Query: 59 TVSHAIYHGKSNAIVNVR----TENGREVRVTPVHKLFVK------IGNSVIERPASEVN 108
A + VR T+ R++ V H VK + +
Sbjct: 93 ARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKL-YLILDFLR 151
Query: 109 EGDEIAWPSVS---ENGDSQ-----------TVTTTLVLTFDRVVSKEMHSGVFDV 150
GD S D + + + ++ D + +
Sbjct: 152 GGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHI 207
gi|401774 (L07599) ribosomal protein S6 kinase 3 [Homo sapiens]
Length = 580
Score = 32.7 bits (73), Expect = 1.7
Identities = 18/176 (10%), Positives = 45/176 (25%), Gaps = 31/176 (17%)
Query: 4 GDTPVLLDAGERRIGDL-----FMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVE 58
G+ + E I ++ E + + +++ +++ + +
Sbjct: 33 GEEEINPQTEEVSIKEIAITHHVKEGHEKADPSQFEL-LKVLGQGSFGKVFLVKKISGSD 91
Query: 59 TVSHAIYHGKSNAIVNVR----TENGREVRVTPVHKLFVK------IGNSVIERPASEVN 108
A + VR T+ R++ V H VK + +
Sbjct: 92 ARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKL-YLILDFLR 150
Query: 109 EGDEIAWPSVS---ENGDSQ-----------TVTTTLVLTFDRVVSKEMHSGVFDV 150
GD S D + + + ++ D + +
Sbjct: 151 GGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHI 206
gi|2688661 (AE001172) conserved hypothetical protein [Borrelia burgdorferi]
Length = 177
Score = 32.7 bits (73), Expect = 1.7
Identities = 18/125 (14%), Positives = 38/125 (30%), Gaps = 6/125 (4%)
Query: 41 RLHDXWRIYSMVGSEIVETVSHAIYHGKSNAIVNVRTENGREVRVTPVHKLF----VKIG 96
L ++ + I E + IY+ I+ +R N E VT K+
Sbjct: 14 ELKRIIKLANKKFKFIKEEIKTDIYYSNQKKIIRIRKLNTLEKIVTFKKKILDNNNTVEI 73
Query: 97 NSVIERPASEVNEGDEIAWPSVSENGDSQTVTTTLVLTFDRVVSKEMHSGVFDVYDLMVP 156
N IE + + + + ++ ++ E++ + L +
Sbjct: 74 NKEIEFKIDSI--NNFLTLIKELKFKKLYKKIKKSLIYQTNNLNVEINEIKNLGFFLEIE 131
Query: 157 DYGYN 161
N
Sbjct: 132 KIINN 136
gi|2983308 (AE000704) cation transporting ATPase (E1-E2 family) [Aquifex
aeolicus]
Length = 835
Score = 32.7 bits (73), Expect = 1.7
Identities = 17/104 (16%), Positives = 30/104 (28%), Gaps = 27/104 (25%)
Query: 70 NAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWPSVSENGDSQTVTT 129
+ V+T+ V + PASE+ GD + +
Sbjct: 108 KKLTEVKTK--------------VYRDGKLKVIPASELVPGDVVYIQEGDVVPADIRLIE 153
Query: 130 TLVLTFD------RVVSKEMHSGVF-----DVY--DLMVPDYGY 160
++ L D V E ++ V VY +V +
Sbjct: 154 SVGLMVDESVLTGESVPVEKNADVVLPEDTPVYNRSNVVFKGTH 197
sp|P28877|PMA1_CANAL PLASMA MEMBRANE ATPASE 1 (PROTON PUMP) >gi|67970|pir||PXCKP
H+-transporting ATPase (EC 3.6.1.35), plasma membrane -
yeast (Candida albicans) >gi|170818 (M74075) adenosine
triphosphatase [Candida albicans]
Length = 895
Score = 32.3 bits (72), Expect = 2.3
Identities = 10/32 (31%), Positives = 17/32 (52%)
Query: 82 EVRVTPVHKLFVKIGNSVIERPASEVNEGDEI 113
E++ T + V ++E PA+EV GD +
Sbjct: 148 ELKKTLANSALVVRNGQLVEIPANEVVPGDIL 179
sp|P54776|PRSA_LYCES 26S PROTEASE REGULATORY SUBUNIT 6A HOMOLOG (TAT-BINDING PROTEIN
HOMOLOG 1) (TBP-1) (MG(2+)-DEPENDENT ATPASE 1) (LEMA-1)
>gi|1362099|pir||S56672 probable 26S proteinase chain
MA-1 - tomato >gi|732815|emb|CAA52445| (X74426)
Mg-dependent ATPase 1 [Lycopersicon esculentum]
Length = 423
Score = 32.3 bits (72), Expect = 2.3
Identities = 16/147 (10%), Positives = 35/147 (22%), Gaps = 33/147 (22%)
Query: 16 RIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVETVSHAIYHG--KSNAIV 73
+I + + K+ + N I M E E I + V
Sbjct: 55 KIKENQEKIKLNKQLPYLVGNI--------VEILEMNPEEEAEEDGANIDLDSQRKGKCV 106
Query: 74 NVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWPSVSENGDSQTVTTTLVL 133
++T + + + + + + GD + L
Sbjct: 107 VLKTSTRQTIFL----PVVGLVDP-------DNLKPGDLVGV------------NKDSYL 143
Query: 134 TFDRVVSKEMHSGVFDVYDLMVPDYGY 160
D + S+ D + +
Sbjct: 144 ILDTLPSEYDSRVKAMEVDEKPTEDYH 170
gi|2150052 (AF001313) surface layer protein [Lactobacillus crispatus]
Length = 440
Score = 32.3 bits (72), Expect = 2.3
Identities = 7/61 (11%), Positives = 17/61 (27%), Gaps = 2/61 (3%)
Query: 46 WRIYSMVGSEIVETVSHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPAS 105
++ G++ + +Y V + G EV T + + +
Sbjct: 371 INAANIDGTKRTLKHNAYVYKSSKKRANKVVLKKGTEV--TTYGGAYTFKNGKQYYKIGN 428
Query: 106 E 106
Sbjct: 429 N 429
gb|AAD36690.1|AE001805_15 (AE001805) lepA protein [Thermotoga maritima]
Length = 621
Score = 32.3 bits (72), Expect = 2.3
Identities = 11/79 (13%), Positives = 25/79 (30%), Gaps = 8/79 (10%)
Query: 73 VNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWPSVSENGDSQTVTTTLV 132
V+ NG E+ +T K ++E A E + ++ + + +
Sbjct: 391 YRVKLRNGEEIEITDPSKF--PDEGEILE--AYE----PYVDLSIITPSEYIGAIINLVQ 442
Query: 133 LTFDRVVSKEMHSGVFDVY 151
+ ++G V
Sbjct: 443 NEKRGELRITENAGKNRVI 461
gi|160409 (M69183) mature-parasite-infected erythrocyte surface antigen
[Plasmodium falciparum]
Length = 1510
Score = 31.9 bits (71), Expect = 2.9
Identities = 23/151 (15%), Positives = 45/151 (29%), Gaps = 19/151 (12%)
Query: 7 PVLLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVETVSHAIYH 66
++ + ++ I E KE ++ ++ V + VE +
Sbjct: 724 EIITEEVKKEIEK--QEEKGNKENILEIKDI-VIGQEVIIEEVKKVIKKKVEKGIKENHT 780
Query: 67 GKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASE-VNEGDEIAWPSVS-ENGDS 124
+ ++ G+E+ V+ IE+ E + E D + V E
Sbjct: 781 ESKDKVI------GQEII--------VEEVKEEIEKQVEEGIKENDTESKDKVIGEEVIK 826
Query: 125 QTVTTTLVLTFDRVVSKEMHSGVFDVYDLMV 155
V D+V +E V V
Sbjct: 827 GDVNEEGPENKDKVTKQEKVKEVKKEVKKKV 857
Score = 31.5 bits (70), Expect = 3.9
Identities = 18/165 (10%), Positives = 52/165 (30%), Gaps = 27/165 (16%)
Query: 18 GDLFMEAIRPKERGEIGQNEEIVRLHDXW---RIYSMVGS--EIVETVSHAIYHGKSNAI 72
D+ + K++ ++E V+ + ++ + EI E V + +
Sbjct: 514 EDVKEKNDEQKDKVLGEGDKEDVKEKNDGKKDKVIGSEKTQKEIKEKVEKRVKKKCKKKV 573
Query: 73 VN-VR---TENGREVRVTPVHKLFVKIGNSVIERPASE-VNE-----GDEIAWPSVSENG 122
++ TE +V+ + ++ I++ + + E D++ P +
Sbjct: 574 KKGIKENDTEGNDKVKGPE---IIIEEVKEEIKKQVEDGIKENDTEGNDKVKGPEIITEE 630
Query: 123 DSQTV-------TTTLVLTFDRVVS--KEMHSGVFDVYDLMVPDY 158
+ + + V + + V + V +
Sbjct: 631 VKEEIKKQVEDGIKENDTEGNDKVKGPEIITEEVKEEIKKQVEEG 675
Score = 30.7 bits (68), Expect = 6.6
Identities = 17/177 (9%), Positives = 51/177 (28%), Gaps = 36/177 (20%)
Query: 5 DTPVLLDAGERRIGDLFMEAIRPKERGEIG---------QNEEIVRLHDXWRIYSMVGSE 55
D + + ++ I + + ++ K + ++ N+++ +
Sbjct: 545 DKVIGSEKTQKEIKEKVEKRVKKKCKKKVKKGIKENDTEGNDKVKGPEIIIEEVKEEIKK 604
Query: 56 IVETVSHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNE-----G 110
VE ++ + G E+ +T VK + ++ + E
Sbjct: 605 QVEDGIKENDTEGNDKV------KGPEI-ITEE----VKE--EIKKQVEDGIKENDTEGN 651
Query: 111 DEIAWPSVSENGDSQTV-------TTTLVLTFDRVVS--KEMHSGVFDVYDLMVPDY 158
D++ P + + + + V + + V + V +
Sbjct: 652 DKVKGPEIITEEVKEEIKKQVEEGIKENDTEGNDKVKGPEIITEEVKEEIKKQVEEG 708
emb|CAA30336| (X07453) 11-1 polypeptide [Plasmodium falciparum]
Length = 1315
Score = 31.9 bits (71), Expect = 2.9
Identities = 23/163 (14%), Positives = 48/163 (29%), Gaps = 14/163 (8%)
Query: 2 VSGDTPVLLDAGERRI-----GDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEI 56
V+ + V E I +L E + ++ E+ E + + +
Sbjct: 696 VTAEEIVEEFVVEVEIEEKIPKELVEEVMPEEDVDEVVPEELVEEPDEVVEEVTTEELTE 755
Query: 57 VETVSHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEI--A 114
I +V + + V V P I + E+PA EV + +
Sbjct: 756 EVIPEELIEKVVEEELVE-KVVAQKIVEVIPEE----LIEEVITEKPAEEVIP-ELVEEV 809
Query: 115 WPSVSENGDSQTVTTTLVLTFDRVVSKEMHSGVFDVYDLMVPD 157
P + + + VV + + V + + +
Sbjct: 810 IPEEI-VEEVLPEEVVKEVIPEEVVEEVIPEEVVEEVPEEIVE 851
pir||S00485 gene 11-1 protein precursor - Plasmodium falciparum (fragments)
Length = 1948
Score = 31.9 bits (71), Expect = 2.9
Identities = 23/163 (14%), Positives = 48/163 (29%), Gaps = 14/163 (8%)
Query: 2 VSGDTPVLLDAGERRI-----GDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEI 56
V+ + V E I +L E + ++ E+ E + + +
Sbjct: 696 VTAEEIVEEFVVEVEIEEKIPKELVEEVMPEEDVDEVVPEELVEEPDEVVEEVTTEELTE 755
Query: 57 VETVSHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEI--A 114
I +V + + V V P I + E+PA EV + +
Sbjct: 756 EVIPEELIEKVVEEELVE-KVVAQKIVEVIPEE----LIEEVITEKPAEEVIP-ELVEEV 809
Query: 115 WPSVSENGDSQTVTTTLVLTFDRVVSKEMHSGVFDVYDLMVPD 157
P + + + VV + + V + + +
Sbjct: 810 IPEEI-VEEVLPEEVVKEVIPEEVVEEVIPEEVVEEVPEEIVE 851
pir||A45605 mature-parasite-infected erythrocyte surface antigen MESA -
Plasmodium falciparum
Length = 1526
Score = 31.9 bits (71), Expect = 2.9
Identities = 23/151 (15%), Positives = 45/151 (29%), Gaps = 19/151 (12%)
Query: 7 PVLLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVETVSHAIYH 66
++ + ++ I E KE ++ ++ V + VE +
Sbjct: 740 EIITEEVKKEIEK--QEEKGNKENILEIKDI-VIGQEVIIEEVKKVIKKKVEKGIKENHT 796
Query: 67 GKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASE-VNEGDEIAWPSVS-ENGDS 124
+ ++ G+E+ V+ IE+ E + E D + V E
Sbjct: 797 ESKDKVI------GQEII--------VEEVKEEIEKQVEEGIKENDTESKDKVIGEEVIK 842
Query: 125 QTVTTTLVLTFDRVVSKEMHSGVFDVYDLMV 155
V D+V +E V V
Sbjct: 843 GDVNEEGPENKDKVTKQEKVKEVKKEVKKKV 873
Score = 31.5 bits (70), Expect = 3.9
Identities = 18/165 (10%), Positives = 52/165 (30%), Gaps = 27/165 (16%)
Query: 18 GDLFMEAIRPKERGEIGQNEEIVRLHDXW---RIYSMVGS--EIVETVSHAIYHGKSNAI 72
D+ + K++ ++E V+ + ++ + EI E V + +
Sbjct: 530 EDVKEKNDEQKDKVLGEGDKEDVKEKNDGKKDKVIGSEKTQKEIKEKVEKRVKKKCKKKV 589
Query: 73 VN-VR---TENGREVRVTPVHKLFVKIGNSVIERPASE-VNE-----GDEIAWPSVSENG 122
++ TE +V+ + ++ I++ + + E D++ P +
Sbjct: 590 KKGIKENDTEGNDKVKGPE---IIIEEVKEEIKKQVEDGIKENDTEGNDKVKGPEIITEE 646
Query: 123 DSQTV-------TTTLVLTFDRVVS--KEMHSGVFDVYDLMVPDY 158
+ + + V + + V + V +
Sbjct: 647 VKEEIKKQVEDGIKENDTEGNDKVKGPEIITEEVKEEIKKQVEEG 691
Score = 30.7 bits (68), Expect = 6.6
Identities = 17/177 (9%), Positives = 51/177 (28%), Gaps = 36/177 (20%)
Query: 5 DTPVLLDAGERRIGDLFMEAIRPKERGEIG---------QNEEIVRLHDXWRIYSMVGSE 55
D + + ++ I + + ++ K + ++ N+++ +
Sbjct: 561 DKVIGSEKTQKEIKEKVEKRVKKKCKKKVKKGIKENDTEGNDKVKGPEIIIEEVKEEIKK 620
Query: 56 IVETVSHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNE-----G 110
VE ++ + G E+ +T VK + ++ + E
Sbjct: 621 QVEDGIKENDTEGNDKV------KGPEI-ITEE----VKE--EIKKQVEDGIKENDTEGN 667
Query: 111 DEIAWPSVSENGDSQTV-------TTTLVLTFDRVVS--KEMHSGVFDVYDLMVPDY 158
D++ P + + + + V + + V + V +
Sbjct: 668 DKVKGPEIITEEVKEEIKKQVEEGIKENDTEGNDKVKGPEIITEEVKEEIKKQVEEG 724
gi|497641 (U07621) Vps10p [Saccharomyces cerevisiae]
Length = 1577
Score = 31.9 bits (71), Expect = 2.9
Identities = 13/96 (13%), Positives = 23/96 (23%), Gaps = 12/96 (12%)
Query: 88 VHKLFVKIGNSVIERPASEV----NEGDEIAWPSVSENGDSQTVTTTLVLTFDRVVSK-- 141
+ F+ + + A + GD + + K
Sbjct: 481 DQRTFISRDGGLTWKLAFDFPCLYAVGDYGNVIVAIPYNADEDDDPQSEFYYSLDQGKTW 540
Query: 142 -----EMHSGVFDVYDLMVPDYGYNFIGGNGLIVLH 172
E +V + G FI NG + H
Sbjct: 541 TEYQLETTIYPNEVMNTTPDGSGAKFIL-NGFTLAH 575
sp|P32319|PEP1_YEAST VACUOLAR PROTEIN SORTING/TARGETING PROTEIN PEP1 PRECURSOR (VACUOLAR
CARBOXYPEPTIDASE SORTING RECEPTOR VPS10)
(CARBOXYPEPTIDASE Y RECEPTOR) (CPY RECEPTOR)
>gi|283223|pir||S25329 carboxypeptidase Y-sorting
protein PEP1 precursor - yeast (Saccharomyces
cerevisiae) >gi|3303|emb|CAA48568| (X68577)
transmembrane protein [Saccharomyces cerevisiae]
>gi|536009|emb|CAA84836| (Z35778) ORF YBL017c
[Saccharomyces cerevisiae]
Length = 1579
Score = 31.9 bits (71), Expect = 2.9
Identities = 13/96 (13%), Positives = 23/96 (23%), Gaps = 12/96 (12%)
Query: 88 VHKLFVKIGNSVIERPASEV----NEGDEIAWPSVSENGDSQTVTTTLVLTFDRVVSK-- 141
+ F+ + + A + GD + + K
Sbjct: 483 DQRTFISRDGGLTWKLAFDFPCLYAVGDYGNVIVAIPYNADEDDDPQSEFYYSLDQGKTW 542
Query: 142 -----EMHSGVFDVYDLMVPDYGYNFIGGNGLIVLH 172
E +V + G FI NG + H
Sbjct: 543 TEYQLETTIYPNEVMNTTPDGSGAKFIL-NGFTLAH 577
gi|2621831 (AE000853) phenylalanyl-tRNA synthetase [Methanobacterium
thermoautotrophicum]
Length = 511
Score = 31.9 bits (71), Expect = 2.9
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 7 PVLLDAGERRIGDLFMEAIRP-KERGEIGQNEEIVRLHDXWRIYSMVGSEIVETVSHAI 64
+LL+ G RI +L E K+ +I ++ + G +++E +
Sbjct: 151 ELLLERGSVRIRELPDELRGALKDLKGRKGIVDIRKIKRHTIELTTEGRKLLERGIEIV 209
pir||C56657 PfEMP2/MESA (clone 9025/60) - Plasmodium falciparum (fragment)
>gi|263280|bbs|122455 (S52459) PfEMP2, MESA, PP330=large
antigenic protein {repeating structure} [Plasmodium
falciparum, Malayan Camp isolate, Peptide Partial, 230
aa] [Plasmodium falciparum]
Length = 230
Score = 31.5 bits (70), Expect = 3.9
Identities = 18/165 (10%), Positives = 52/165 (30%), Gaps = 27/165 (16%)
Query: 18 GDLFMEAIRPKERGEIGQNEEIVRLHDXW---RIYSMVGS--EIVETVSHAIYHGKSNAI 72
D+ + K++ ++E V+ + ++ + EI E V + +
Sbjct: 11 EDVKEKNDEQKDKVLGEGDKEDVKEKNDGKKDKVIGSEKTQKEIKEKVEKRVKKKCKKKV 70
Query: 73 VN-VR---TENGREVRVTPVHKLFVKIGNSVIERPASE-VNE-----GDEIAWPSVSENG 122
++ TE +V+ + ++ I++ + + E D++ P +
Sbjct: 71 KKGIKENDTEGNDKVKGPE---IIIEEVKEEIKKQVEDGIKENDTEGNDKVKGPEIITEE 127
Query: 123 DSQTV-------TTTLVLTFDRVVS--KEMHSGVFDVYDLMVPDY 158
+ + + V + + V + V +
Sbjct: 128 VKEEIKKQVEEGIKENDTEGNDKVKGPEIITEEVKEEIKKQVEEG 172
pir||S67081 hypothetical protein YOR189w - yeast (Saccharomyces cerevisiae)
>gi|1420453|emb|CAA99398| (Z75097) ORF YOR189w
[Saccharomyces cerevisiae]
Length = 116
Score = 31.5 bits (70), Expect = 3.9
Identities = 11/71 (15%), Positives = 25/71 (34%), Gaps = 4/71 (5%)
Query: 66 HGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSV-IERPASEVNEGDEIAWPSVSE---N 121
N + +++ +G +V T + V+ E AS+V D+ A +
Sbjct: 41 WDYKNKAIEIKSFSGYKVNFTGWIRRDVREERQRGSEFTASDVKGSDDKATRKKEPADED 100
Query: 122 GDSQTVTTTLV 132
+ + +
Sbjct: 101 PEVKQLEKEGE 111
pir||A64363 hypothetical protein MJ0505 - Methanococcus jannaschii >gi|1591208
(U67500) M. jannaschii predicted coding region MJ0505
[Methanococcus jannaschii]
Length = 251
Score = 31.5 bits (70), Expect = 3.9
Identities = 9/104 (8%), Positives = 27/104 (25%), Gaps = 12/104 (11%)
Query: 41 RLHDXWRIY---SMVGSEIVETVSHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGN 97
+L+ ++I +I + + + GR + + +K+ +
Sbjct: 126 KLNKSFKILEECGFNPKKIKYFIPPRYKLSEDAE----KLFLGRNITIILENKMITEKDG 181
Query: 98 SVIERPASEVN-----EGDEIAWPSVSENGDSQTVTTTLVLTFD 136
++E + + D + F
Sbjct: 182 KIVEISITNREYTWYLPKPLVKVAEKIATTDYKLSIKENRKFFL 225
sp|Q57928|Y505_METJA HYPOTHETICAL PROTEIN MJ0505
Length = 250
Score = 31.5 bits (70), Expect = 3.9
Identities = 9/104 (8%), Positives = 27/104 (25%), Gaps = 12/104 (11%)
Query: 41 RLHDXWRIY---SMVGSEIVETVSHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGN 97
+L+ ++I +I + + + GR + + +K+ +
Sbjct: 125 KLNKSFKILEECGFNPKKIKYFIPPRYKLSEDAE----KLFLGRNITIILENKMITEKDG 180
Query: 98 SVIERPASEVN-----EGDEIAWPSVSENGDSQTVTTTLVLTFD 136
++E + + D + F
Sbjct: 181 KIVEISITNREYTWYLPKPLVKVAEKIATTDYKLSIKENRKFFL 224
sp|O62619|KPYK_DROME PYRUVATE KINASE (PK) >gi|3108349 (AF061507) pyruvate kinase
[Drosophila melanogaster] >gi|3128475 (AF062478)
pyruvate kinase [Drosophila melanogaster]
Length = 533
Score = 31.5 bits (70), Expect = 3.9
Identities = 5/52 (9%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Query: 68 KSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASE----VNEGDEIAW 115
+ + + G ++++T + K ++ V G+ +
Sbjct: 128 GGSGTAEIELKKGEKIKLTTNKEFLEKGSLEIVYVDYENIVNVVKPGNRVFV 179
gb|AAC34384.1| (AF056116) fugu hedgehog [Fugu rubripes]
Length = 442
Score = 31.5 bits (70), Expect = 3.9
Identities = 15/92 (16%), Positives = 34/92 (36%), Gaps = 17/92 (18%)
Query: 1 CVSGDTPVLLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVETV 60
C G + V + G K + + ++ L + ++ +
Sbjct: 201 CFPGWSRVTVAGGF------------QKSLSSLTPGDRVMALSETGQVVFSPVLLFLHRD 248
Query: 61 SHAIYHGKSNAIVNVRTENGREVRVTPVHKLF 92
+ + ++++TE+GR + VTP H +F
Sbjct: 249 PESRWR-----FLSLQTEDGRRLAVTPHHLVF 275
pir||B64484 hypothetical protein MJ1475 - Methanococcus jannaschii
>gi|1592114 (U67588) M. jannaschii predicted coding
region MJ1475 [Methanococcus jannaschii]
Length = 125
Score = 31.1 bits (69), Expect = 5.1
Identities = 10/75 (13%), Positives = 21/75 (27%), Gaps = 13/75 (17%)
Query: 18 GDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVETVSHAIYHGKSNAIVN--- 74
+L + + EI N E + + + + Y S I+
Sbjct: 10 EELIEKIKECENEEEIYINLE-LDRDVAIALLESCEPKKIYLPKSK-YKRSSKKIIKALE 67
Query: 75 --------VRTENGR 81
++ + GR
Sbjct: 68 GVDVEVIPIKAKTGR 82
gi|2621236 (AE000806) tungsten formylmethanofuran dehydrogenase, subunit C
homolog [Methanobacterium thermoautotrophicum]
Length = 229
Score = 31.1 bits (69), Expect = 5.1
Identities = 14/88 (15%), Positives = 31/88 (34%), Gaps = 6/88 (6%)
Query: 32 EIGQNEEI-VRLHDXWRIYSMVGSEIVETVSHAIYHGKSNAIVNVRT----ENGREVRVT 86
I + ++ + + IV +A+++ + +V G T
Sbjct: 5 VIDAGSKTPREVNRAIKSLAADHDRIVVKNPNAMHYIGAGLTGDVELIIDGSAGY-FAAT 63
Query: 87 PVHKLFVKIGNSVIERPASEVNEGDEIA 114
+H V+I + PA + EG+ +
Sbjct: 64 MIHGPRVRINGNAGWFPADNMTEGEVVV 91
gi|2649302 (AE001016) conserved hypothetical protein [Archaeoglobus fulgidus]
Length = 407
Score = 31.1 bits (69), Expect = 5.1
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Query: 85 VTPVHKLFVKIGNSVIERPASEVNEGDEIAWPS 117
VT H FV+ G P +++ D +
Sbjct: 98 VTTNHPTFVRYGGE--WLPVEDISM-DRVIVIR 127
gi|2688668 (AE001173) rare lipoprotein A (rlpA) [Borrelia burgdorferi]
Length = 275
Score = 31.1 bits (69), Expect = 5.1
Identities = 9/94 (9%), Positives = 24/94 (24%), Gaps = 8/94 (8%)
Query: 21 FMEAIRPKERGEIGQNEEIVRLHDXW----RIYSMVGSEIVETVSHAIYHGKSNAIVNVR 76
K+ + +N + + + ++ V ++ +
Sbjct: 159 IPGVKEEKKTKQSDENISVKNKSKDLLADYSVSADKETDFYIQVGSYRKKDYADRAYRIL 218
Query: 77 TENGREVRVTPVHKLFVKIGNSVIERPASEVNEG 110
+ G V V + I A +V +
Sbjct: 219 KKAGLFVVVNSHGPFYTV----FIPTNADDVQKN 248
gi|3044185 (AF056936) mature parasite-infected erythrocyte surface antigen
[Plasmodium falciparum]
Length = 1661
Score = 31.1 bits (69), Expect = 5.1
Identities = 19/149 (12%), Positives = 42/149 (27%), Gaps = 17/149 (11%)
Query: 18 GDLFMEAIRPKERGEIGQNEEIVRLHDXW---RIYSMVGS--EIVETVSHAIYHGKSNAI 72
D+ + K++ ++E V+ + ++ + EI E V + +
Sbjct: 530 EDVKEKNDEQKDKVLGEGDKEDVKEKNDGKKDKVIGSEKTQKEIKEKVEKRVKKKCKKKV 589
Query: 73 VNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWPSVSENGDS--QTVTTT 130
EN E K+ G +I EV E + + D+
Sbjct: 590 KKGIKENDTE----GNDKV---KGPEII---IEEVKEEIKKQVEDGIKENDTEGNDKVKG 639
Query: 131 LVLTFDRVVSKEMHSGVFDVYDLMVPDYG 159
+ + V + + +
Sbjct: 640 PEIISEEVKEEIKKHVEEGIKENNTEGND 668
Score = 31.1 bits (69), Expect = 5.1
Identities = 20/176 (11%), Positives = 49/176 (27%), Gaps = 32/176 (18%)
Query: 7 PVLLDAGERRIGDLFMEAIR----PKERGEIGQNEEIVRLHDXWRIYSMV---------- 52
++ + + I E I+ + IGQ + + +
Sbjct: 674 EIITEEVKEEIKKHVEEGIKENDTESKDKVIGQEIITEEVKEGIKENDTENKDKVIGPEM 733
Query: 53 GSEIVETVS-HAIYHGKSNAIVNVR-TENGREVRVTPVHKLFVKIGNSVIERPASEVNEG 110
+E V+ G I+ ++ G+EV + V K+ + ++ + E
Sbjct: 734 ITEEVKKEIEKQEEKGNKENILEIKDIVIGQEVIIEEVKKV-------IKKKVEKGIKEN 786
Query: 111 -----DEIAWPSVSENGDSQTVTTTLVLTFDRVVSKEMHSGVFDVYDLMVPDYGYN 161
D++ + + + + + + V V N
Sbjct: 787 HTESKDKVIGQEIIVEEVKEEIEKQVE----EGIKENDTESKDKVIGQEVIKGDVN 838
emb|CAB04547| (Z81560) similar to Hint module [Caenorhabditis elegans]
Length = 1021
Score = 31.1 bits (69), Expect = 5.1
Identities = 13/98 (13%), Positives = 35/98 (35%), Gaps = 25/98 (25%)
Query: 1 CVSGDTPVLLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVETV 60
C S DT V +G++R+ ++ + + + +
Sbjct: 802 CFSRDTWVTTPSGKKRMDEI----------------------EIGDYVLTADLKTALFSA 839
Query: 61 SHAIYHGKSNAI---VNVRTENGREVRVTPVHKLFVKI 95
H + + + ++T+NG+ +++T H ++
Sbjct: 840 ITLWIHREPETVQEFLEIKTDNGKTLQLTAGHFIYATE 877
emb|CAA07708| (AJ007839) S-layer protein [Lactobacillus crispatus]
Length = 451
Score = 31.1 bits (69), Expect = 5.1
Identities = 7/55 (12%), Positives = 15/55 (26%), Gaps = 2/55 (3%)
Query: 52 VGSEIVETVSHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASE 106
G++ + +Y V + G EV T + + +
Sbjct: 388 DGTKRTLKHNAYVYKTSKKRANKVTLKKGTEV--TTYGGTYTFKNGKQYYKIGNN 440
gi|3237318 (AF011400) alpha-1,6-galactosidase [Thermotoga neapolitana]
Length = 551
Score = 30.7 bits (68), Expect = 6.6
Identities = 8/70 (11%), Positives = 16/70 (22%), Gaps = 11/70 (15%)
Query: 89 HKLFVKIGNSVI-ERPASEVNEGDEIAWPSVSENGDSQTVTTTLVLTFDRVVSKEMHSGV 147
H F ++ +V D + D T ++ V
Sbjct: 122 HPFFAAENGELVAYLEYFDVKFDDFVPIEPFVVLEDPNTSLLL----------EKYAELV 171
Query: 148 FDVYDLMVPD 157
+P+
Sbjct: 172 GKENSARIPE 181
gi|3252899 (AF055482) alpha-galactosidase [Thermotoga neapolitana]
Length = 554
Score = 30.7 bits (68), Expect = 6.6
Identities = 8/70 (11%), Positives = 16/70 (22%), Gaps = 11/70 (15%)
Query: 89 HKLFVKIGNSVI-ERPASEVNEGDEIAWPSVSENGDSQTVTTTLVLTFDRVVSKEMHSGV 147
H F ++ +V D + D T ++ V
Sbjct: 125 HPFFAAENGELVAYLEYFDVKFDDFVPIEPFVVLEDPNTSLLL----------EKYAELV 174
Query: 148 FDVYDLMVPD 157
+P+
Sbjct: 175 GKENSARIPE 184
gi|3372615 (AF059030) voltage-gated Na channel alpha subunit NaN;
tetrodotoxin-resistant voltage-gated Na channel; TTX-R
voltage-gated Na channel [Rattus norvegicus]
>gi|4741729|emb|CAB41850.1| (AJ237852) voltage-gated
sodium channel alpha subunit [Rattus norvegicus]
Length = 1765
Score = 30.7 bits (68), Expect = 6.6
Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 6/60 (10%)
Query: 52 VGSEIVETVSHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGD 111
E V Y +V +R ++ R + H++F + ++V +
Sbjct: 1711 KEEEQGAAVIQRAYRKHMEKMVKLRLKD----RSSSSHQVFC--NGDLSSLDVAKVKVHN 1764
gi|3845174 (AE001392) PfS230 paralog (predicted secreted protein) [Plasmodium
falciparum]
Length = 2496
Score = 30.7 bits (68), Expect = 6.6
Identities = 13/91 (14%), Positives = 26/91 (28%), Gaps = 10/91 (10%)
Query: 20 LFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVETVSHAIYHGKSNAIVNVRTEN 79
F N+ I Y ++ V+ I +N+R N
Sbjct: 133 FFETFFENFWDNIFYMNKYIFN----IYYYMFDYTKKVKKKIEGI-----KENMNIRHNN 183
Query: 80 GREVRVTPVHKLFVKIGNSVIERPASEVNEG 110
+ VHK F+ + ++ ++
Sbjct: 184 NYN-NIFYVHKFFLFNDDEEKKKRNDDIKIN 213
emb|CAB41421.1| (AJ130874) hypothetical protein [Neisseria meningitidis]
Length = 211
Score = 30.7 bits (68), Expect = 6.6
Identities = 8/37 (21%), Positives = 16/37 (42%), Gaps = 1/37 (2%)
Query: 77 TENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEI 113
+G E+R T +H ++ I +V G+ +
Sbjct: 105 LAHGYEIRNTDMHPIYSLENGERI-NHGKDVIIGNHV 140
gi|1208822 (U49945) short region of similarity to myosin heavy chain
[Caenorhabditis elegans]
Length = 535
Score = 30.7 bits (68), Expect = 6.6
Identities = 14/154 (9%), Positives = 41/154 (26%), Gaps = 7/154 (4%)
Query: 7 PVLLDAGERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVETVSHAIYH 66
+L D + + + I K+ E + +++ + E +
Sbjct: 74 KILDDGSLKNVK--AAKIISGKDAEETNKMLQMLGTNATSFNSRNGTGEEKKKKKVKKED 131
Query: 67 GKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWPSVSENGDSQT 126
K + T+ + T K S ++ A E + + + ++
Sbjct: 132 KKGDEEEKSTTKKRSSKKETHEEK-----EKSEKKKSAEEKEKKKKSSSSKERHKSSDRS 186
Query: 127 VTTTLVLTFDRVVSKEMHSGVFDVYDLMVPDYGY 160
+ + ++ + P +
Sbjct: 187 SEKSSEKSSKEKKKEKSTTDEKPKKSKKDPSERH 220
emb|CAA70130| (Y08926) AARP1 protein [Plasmodium falciparum]
Length = 3844
Score = 30.7 bits (68), Expect = 6.6
Identities = 24/172 (13%), Positives = 50/172 (28%), Gaps = 33/172 (19%)
Query: 17 IGDLFMEAIRP-KERGEIGQNEEIVRLHDXWRIYSMVGSEIVETVSHAIYHGKS--NAIV 73
I L+ + K E+ N+E + YS+ E S I + +
Sbjct: 328 IKILYNKMYNNNKMNKELTYNDEYIINEFIRDFYSI------EKHSEEIINQRKILQERY 381
Query: 74 NVRTENGREVRVTPVH--KLFVKIG------NSVIERP----ASEVNE-GDEIAWPSVSE 120
+G +++T H K F N +S++ E ++
Sbjct: 382 E---NDGNNMKITLFHFKKFFTSNDDIYLESNYFKWIMNNNSSSKLRECNNKYRIKYRET 438
Query: 121 NGDSQTVTTTLVLTFDRVVSKEMHSGVFDVYDLMVPDYGYNFIGGNGLIVLH 172
+ + ++ + + + D+ +N I LH
Sbjct: 439 IQEKNIKIKCKNIYIEKKLKNSKYEFNEFL-DIKYDKEKHN-------IYLH 482
sp|O67638|YH58_AQUAE HYPOTHETICAL PROTEIN AQ_1758 >gi|2984062 (AE000754) hypothetical
protein [Aquifex aeolicus]
Length = 316
Score = 30.7 bits (68), Expect = 6.6
Identities = 6/55 (10%), Positives = 18/55 (31%), Gaps = 2/55 (3%)
Query: 92 FVKIGNSVIERPASEVNEGDEIA--WPSVSENGDSQTVTTTLVLTFDRVVSKEMH 144
V + + +P+ ++ EG+ + P ++ D ++
Sbjct: 42 LVYVNGEEVRKPSRKLREGERVILHVPEPEPLDVKPENIPINIIYEDEDIAVVEK 96
sp|P46465|PRSA_ORYSA 26S PROTEASE REGULATORY SUBUNIT 6A HOMOLOG (TAT-BINDING PROTEIN
HOMOLOG 1) (TBP-1) >gi|556560|dbj|BAA04614| (D17788)
rice homologue of Tat binding protein [Oryza sativa]
Length = 429
Score = 30.3 bits (67), Expect = 8.7
Identities = 21/152 (13%), Positives = 40/152 (25%), Gaps = 34/152 (22%)
Query: 16 RIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVETVSHAIYHG--KSNAIV 73
+I + + K+ + N I M + E I + V
Sbjct: 61 KIKENQEKIKLNKQLPYLVGNI--------VEILEMNPEDEAEEDGANIDLDSQRKGKCV 112
Query: 74 NVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNEGDEIAWPSVSENGDSQTVTTTLVL 133
++T + + + + + ++ GD + L
Sbjct: 113 VLKTSTRQTIFL----PVIGLVDPE-------KLKPGDLVGV------------NKDSYL 149
Query: 134 TFDRVVSKEMHSGVFDVYDLMVPDYGYNFIGG 165
D + S+ D P YN IGG
Sbjct: 150 ILDTLPSEYDSRVKAMEVDEK-PTEDYNDIGG 180
emb|CAA83689| (Z33006) hydrolase [Mycoplasma capricolum]
Length = 265
Score = 30.3 bits (67), Expect = 8.7
Identities = 7/50 (14%), Positives = 14/50 (28%), Gaps = 2/50 (4%)
Query: 38 EIVRLHDXWRIYSMVGSEIVETVSHAIYHGKSNAIVNVRTENGREVRVTP 87
+I+ + +YS T + + GR + T
Sbjct: 3 KIIAIDIDGTVYSRKHGVHELTKLAL--KKAREKGIKIVIATGRTISTTR 50
sp|P44440|RNB_HAEIN EXORIBONUCLEASE II (RIBONUCLEASE II) (RNASE II)
>gi|1074071|pir||A64139 exoribonuclease II (RNaseII)
homolog - Haemophilus influenzae (strain Rd KW20)
>gi|1574590 (U32846) exoribonuclease II (rnb)
[Haemophilus influenzae Rd]
Length = 659
Score = 30.3 bits (67), Expect = 8.7
Identities = 13/81 (16%), Positives = 21/81 (25%), Gaps = 3/81 (3%)
Query: 89 HKLFVKIGNSVIERPASEVNEGDEIAWPSVSENGDSQTVTTTLVLT---FDRVVSKEMHS 145
H LF K A + A N + + F +K
Sbjct: 359 HSLFFKEKPDYAFVLAENGKVQEIKAEYRRIANQIVEEAMIIANICAAQFLHEQAKTGIF 418
Query: 146 GVFDVYDLMVPDYGYNFIGGN 166
+D + +NF+ N
Sbjct: 419 NTHSGFDKKFLENAHNFLMAN 439
sp|P53661|Y125_MYCCA HYPOTHETICAL PROTEIN
Length = 267
Score = 30.3 bits (67), Expect = 8.7
Identities = 7/50 (14%), Positives = 14/50 (28%), Gaps = 2/50 (4%)
Query: 38 EIVRLHDXWRIYSMVGSEIVETVSHAIYHGKSNAIVNVRTENGREVRVTP 87
+I+ + +YS T + + GR + T
Sbjct: 3 KIIAIDIDGTVYSRKHGVHELTKLAL--KKAREKGIKIVIATGRTISTTR 50
gi|2649880 (AE001054) cobalt transport ATP-binding protein (cbiO-1)
[Archaeoglobus fulgidus]
Length = 326
Score = 30.3 bits (67), Expect = 8.7
Identities = 13/106 (12%), Positives = 29/106 (27%), Gaps = 7/106 (6%)
Query: 13 GERRIGDLFMEAIRPKERGEIGQNEEIVRLHDXWRIYSMVGSEIVETVSHAIYHGKSNAI 72
G R I ++ + + + ++ + Y M +IV + + +
Sbjct: 204 GLRMIAEIIRKLREEGKGVVVSTHDADLAKEVGDYFYFMDDGKIV-WEGEEFSYSVARKL 262
Query: 73 VNVRTENGREVRVTP---VHKLFVKIGNSVIERPASEVNEGDEIAW 115
G+ + H F A E G+ +
Sbjct: 263 GIRSFSLGKVILAESKIDDHPCFSADELERAVLKAFE---GETVVV 305
dbj|BAA29249.1| (AP000001) 241aa long hypothetical protein [Pyrococcus horikoshii]
Length = 241
Score = 30.3 bits (67), Expect = 8.7
Identities = 8/56 (14%), Positives = 16/56 (28%), Gaps = 2/56 (3%)
Query: 54 SEIVETVSHAIYHGKSNAIVNVRTENGREVRVTPVHKLFVKIGNSVIERPASEVNE 109
+ + G + + V +TP +F G + E +V
Sbjct: 56 GILESYEKEERFIGPTKKYYKISVAKSYVVTLTPD--MFWFKGFELGEPKLEDVRV 109
CPU time: 26.07 user secs. 0.90 sys. secs 26.97 total secs.
Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
Posted date: Jun 17, 1999 2:25 PM
Number of letters in database: 118,775,478
Number of sequences in database: 387,512
Lambda K H
0.318 0.151 0.439
Gapped
Lambda K H
0.270 0.0529 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35035005
Number of Sequences: 387512
Number of extensions: 1261575
Number of successful extensions: 5895
Number of sequences better than 10.0: 203
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 5292
Number of HSP's gapped (non-prelim): 354
length of query: 173
length of database: 118775478
effective HSP length: 53
effective length of query: 120
effective length of database: 98237342
effective search space: 11788481040
effective search space used: 11788481040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.5 bits)
S2: 67 (30.3 bits)
