Java version: 1.4.2_09
ppc Mac OS X 10.3.9
Jalview Version: 2.05b
apple.awt.EventQueueExceptionHandler Caught Throwable : java.lang.ArrayIndexOutOfBoundsException: No such child: 2
java.lang.ArrayIndexOutOfBoundsException: No such child: 2
	at java.awt.Container.getComponent(Container.java:237)
	at javax.swing.JComponent.rectangleIsObscured(JComponent.java:3702)
	at javax.swing.JComponent.paint(JComponent.java:806)
	at javax.swing.JLayeredPane.paint(JLayeredPane.java:557)
	at javax.swing.JComponent._paintImmediately(JComponent.java:4707)
	at javax.swing.JComponent.paintImmediately(JComponent.java:4489)
	at javax.swing.RepaintManager.paintDirtyRegions(RepaintManager.java:436)
	at javax.swing.SystemEventQueueUtilities$ComponentWorkRequest.run(SystemEventQueueUtilities.java:117)
	at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:189)
	at java.awt.EventQueue.dispatchEvent(EventQueue.java:478)
	at java.awt.EventDispatchThread.pumpOneEventForHierarchy(EventDispatchThread.java:234)
	at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:184)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:178)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:170)
	at java.awt.EventDispatchThread.run(EventDispatchThread.java:100)
Java version: 1.5.0_30
ppc Mac OS X 10.5.8
Jalview Version: 2.7
# INFO: Setting default net timeout to 30 seconds.
Exception in thread "Thread-6" java.lang.UnsupportedClassVersionError: Bad version number in .class file
	at java.lang.ClassLoader.defineClass1(Native Method)
	at java.lang.ClassLoader.defineClass(ClassLoader.java:676)
	at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:124)
	at java.net.URLClassLoader.defineClass(URLClassLoader.java:260)
	at java.net.URLClassLoader.access$100(URLClassLoader.java:56)
	at java.net.URLClassLoader$1.run(URLClassLoader.java:195)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.net.URLClassLoader.findClass(URLClassLoader.java:188)
	at java.lang.ClassLoader.loadClass(ClassLoader.java:317)
	at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:280)
	at java.lang.ClassLoader.loadClass(ClassLoader.java:252)
	at java.lang.ClassLoader.loadClassInternal(ClassLoader.java:375)
	at jalview.gui.Desktop$1.run(Desktop.java:324)
	at java.lang.Thread.run(Thread.java:655)
Exception in thread "Thread-13" java.lang.UnsupportedClassVersionError: Bad version number in .class file
	at java.lang.ClassLoader.defineClass1(Native Method)
	at java.lang.ClassLoader.defineClass(ClassLoader.java:676)
	at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:124)
	at java.net.URLClassLoader.defineClass(URLClassLoader.java:260)
	at java.net.URLClassLoader.access$100(URLClassLoader.java:56)
	at java.net.URLClassLoader$1.run(URLClassLoader.java:195)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.net.URLClassLoader.findClass(URLClassLoader.java:188)
	at java.lang.ClassLoader.loadClass(ClassLoader.java:317)
	at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:280)
	at java.lang.ClassLoader.loadClass(ClassLoader.java:252)
	at jalview.ws.jws2.Jws2Discoverer.run(Jws2Discoverer.java:142)
	at java.lang.Thread.run(Thread.java:655)
Adding entry for Workflow - Default User input -> Protein Identifier Mapping -> (Protein identifications, Protein information, Biological pathways, Molecular Interactions)
		
Adding entry for Workflow - Full User input -> Protein Identifier Mapping -> (Protein identifications, Protein information, Biological pathways, Molecular Interactions, Protein localization, Biological models)
		
Adding entry for Workflow - Small User input -> Protein Identifier Mapping -> (Protein identifications, Protein information)
		
Adding entry for Workflow - Default User input -> Protein Identifier Mapping -> (Protein identifications, Protein information, Biological pathways, Molecular Interactions)
		
Adding entry for Workflow - Molecular Interactions User input -> Protein Identifier Mapping -> Molecular Interactions
		
Adding entry for Service - Protein Information User input -> Protein Identifier Mapping -> (Protein identifications, Protein information, Biological pathways, Molecular Interactions, Protein localization, Biologi
           
	Us
Adding entry for Service - Protein Information User input -> Protein Identifier Mapping -> (Protein identifications, Protein information, Biological pathways, Molecular Interactions, Protein localization, Biologi
           
	User input -> Protein Identifier Mapping -> Protein information
		
Adding entry for Service - Protein Identifications User input -> Protein Identifications
		
Adding entry for Service - Biological Pathways User input -> Biological Pathways
		
Adding entry for Service - Molecular Interactions User input -> Molecular Interactions
		
Adding entry for Service - Protein Localization User input -> Protein Localization
		
Adding entry for Service - Biological Models User input -> Biological Models
		
Adding entry for Service - Biological Models User input -> Biological Models 
	

		
Adding entry for Workflow - Molecular Interactions User input -> Protein Identifier Mapping -> Molecular Interactions
		
Adding entry for Service - Protein Information User input -> Protein Identifier Mapping -> Protein information
		
Adding entry for Service - Protein Identifications User input -> Protein Identifications
		
Adding entry for Service - Biological Pathways User input -> Biological Pathways
		
Adding entry for Service - Molecular Interactions User input -> Molecular Interactions
		
Adding entry for Service - Protein Localization User input -> Protein Localization
		
Adding entry for Service - Biological Models User input -> Biological Models
		
Building ws menu again Thread[Thread-19,5,main]
1712 script command tokens
(C) 2009 Jmol Development
Jmol Version: 12.1.13  2010-09-17 21:12
java.vendor: Apple Inc.
java.version: 1.5.0_30
os.name: Mac OS X
memory: 19.2/33.2
processors available: 2
useCommandThread: false

FileManager.getAtomSetCollectionFromFile(/var/folders/Tn/TnmBZenb2Ra8wU+BYofLSU+++TI/-Tmp-/jalview_pdb6385009837629347054.txt)
FileManager opening /var/folders/Tn/TnmBZenb2Ra8wU+BYofLSU+++TI/-Tmp-/jalview_pdb6385009837629347054.txt
The Resolver thinks Pdb
Setting space group name to P 21 21 21
openFile(/var/folders/Tn/TnmBZenb2Ra8wU+BYofLSU+++TI/-Tmp-/jalview_pdb6385009837629347054.txt): 595 ms
INFO - Initialising googletracker for usage stats.
reading 817 atoms
ModelSet: haveSymmetry:false haveUnitcells:true haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Jmol
Time to autoBond: 69 ms
ModelSet: autobonding; use  autobond=false  to not generate bonds automatically
ColorManager: color "roygb" range 0.0 0.0
measurement[0] = [[FES]1602.S1 #736, [THR]89.OG1 #665, 1.328 nm]
Unhandled callback 6 [[FES]1602.S1 #736, [THR]89.OG1 #665, 1.328 nm]
Building ws menu again Thread[Thread-31,5,main]
Building ws menu again Thread[Thread-44,5,main]
Building ws menu again Thread[Thread-52,5,main]
Building ws menu again Thread[Thread-68,5,main]
deregistering discoverer listener
deregistering discoverer listener
deregistering discoverer listener
deregistering discoverer listener
